[Debian-med-packaging] Help with new version of iqtree needed

[Andreas Tille]

Hi,

at first thanks for all the great work while I was absent.  I'd like to
share some photos[1] as my way to thank you.  So much work was done
without me that I honestly considered to stay longer in Iceland. :-P

Back now I wonder whether we might be able to tackle this probably small
C++ problem inside the team.  If I build the current state in Git[2] I
get:

...
[  7%] Building C object pll/CMakeFiles/pll.dir/evaluateGenericSpecial.c.o
cd /build/iqtree-1.4.0+dfsg/obj-x86_64-linux-gnu/pll && /usr/bin/cc  -DIQ_TREE -D_USE_PTHREADS -D__SSE3 -I/build/iqtree-1.4.0+dfsg -I/build/iqtree-1.4.0+dfsg/obj-x86_64-linux-gnu  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -pthread    -o CMakeFiles/pll.dir/evaluateGenericSpecial.c.o   -c /build/iqtree-1.4.0+dfsg/pll/evaluateGenericSpecial.c
In file included from /build/iqtree-1.4.0+dfsg/pll/evaluateGenericSpecial.c:46:0:
/build/iqtree-1.4.0+dfsg/pll/pllInternal.h:150:30: warning: inline function 'bitcount_64_bit' declared but never defined
 extern __inline unsigned int bitcount_64_bit(uint64_t i);
                              ^
In file included from /build/iqtree-1.4.0+dfsg/pll/pll.h:79:0,
                 from /build/iqtree-1.4.0+dfsg/pll/mem_alloc.h:16,
                 from /build/iqtree-1.4.0+dfsg/pll/evaluateGenericSpecial.c:31:
/build/iqtree-1.4.0+dfsg/pll/evaluateGenericSpecial.c: In function 'evaluateGTRCATPROT':
/usr/lib/gcc/x86_64-linux-gnu/5/include/pmmintrin.h:86:1: error: inlining failed in call to always_inline '_mm_hadd_pd': target specific option mismatch
 _mm_hadd_pd (__m128d __X, __m128d __Y)
 ^
/build/iqtree-1.4.0+dfsg/pll/evaluateGenericSpecial.c:2667:10: error: called from here
       tv = _mm_hadd_pd(tv, tv);
          ^
In file included from /build/iqtree-1.4.0+dfsg/pll/pll.h:79:0,
                 from /build/iqtree-1.4.0+dfsg/pll/mem_alloc.h:16,
                 from /build/iqtree-1.4.0+dfsg/pll/evaluateGenericSpecial.c:31:
/usr/lib/gcc/x86_64-linux-gnu/5/include/pmmintrin.h:86:1: error: inlining failed in call to always_inline '_mm_hadd_pd': target specific option mismatch
 _mm_hadd_pd (__m128d __X, __m128d __Y)
 ^
/build/iqtree-1.4.0+dfsg/pll/evaluateGenericSpecial.c:2700:10: error: called from here
       tv = _mm_hadd_pd(tv, tv);
          ^
pll/CMakeFiles/pll.dir/build.make:113: recipe for target 'pll/CMakeFiles/pll.dir/evaluateGenericSpecial.c.o' failed
...


Any hint how to fix this?

Kind regards

       Andreas.


[1] http://fam-tille.de/island2016/
[2] https://anonscm.debian.org/git/debian-med/iqtree.git

-- 
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