[Debian-med-packaging] Bug#837059: abyss: FTBFS (error: cannot convert 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in return)

[Bas Couwenberg]

Source: abyss
Version: 1.9.0-1
Severity: serious
Justification: makes the package in question unusable or mostly so
Control: block 836917 by -1

Dear Maintainer,

The upload of openmpi (2.0.1-3) has triggered an uncoordinated
transition (#836917). Unfortunately your package FTBFS:

 g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o abyss_db_csv-db-csv.o `test -f 'db-csv.cc' || echo './'`db-csv.cc
 db-csv.cc: In function 'bool existFile(const char*)':
 db-csv.cc:23:9: error: cannot convert 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in return
   return file;
          ^~~~

The full buildlog is attached.

Kind Regards,

Bas
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I: using cowbuilder as pbuilder
dpkg-checkbuilddeps: Unmet build dependencies: libboost-graph-dev libsparsehash-dev libtext-multimarkdown-perl libgtest-dev
W: Unmet build-dependency in source
dpkg-buildpackage: source package abyss
dpkg-buildpackage: source version 1.9.0-2
dpkg-buildpackage: source distribution UNRELEASED
dpkg-buildpackage: source changed by Andreas Tille <tille at debian.org>
 dpkg-source --before-build abyss-1.9.0
 fakeroot debian/rules clean
dh  clean --with autoreconf
   dh_testdir
   dh_auto_clean
   dh_autoreconf_clean
   dh_clean
 dpkg-source -b abyss-1.9.0
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building abyss using existing ./abyss_1.9.0.orig.tar.gz
dpkg-source: info: building abyss in abyss_1.9.0-2.debian.tar.xz
dpkg-source: info: building abyss in abyss_1.9.0-2.dsc
 dpkg-genchanges -S >../abyss_1.9.0-2_source.changes
dpkg-genchanges: not including original source code in upload
 dpkg-source --after-build abyss-1.9.0
dpkg-buildpackage: binary and diff upload (original source NOT included)
 -> Copying COW directory
  forking: rm -rf /var/cache/pbuilder/build/cow.12652 
  forking: cp -al /var/cache/pbuilder/base-sid+rebuild.cow /var/cache/pbuilder/build/cow.12652 
I: removed stale ilistfile /var/cache/pbuilder/build/cow.12652/.ilist
  forking: chroot /var/cache/pbuilder/build/cow.12652 cowdancer-ilistcreate /.ilist find . -xdev -path ./home -prune -o \( \( -type l -o -type f \) -a -links +1 -print0 \) | xargs -0 stat --format '%d %i ' 
 -> Invoking pbuilder
  forking: pbuilder build --debbuildopts  --debbuildopts  --buildplace /var/cache/pbuilder/build/cow.12652 --buildresult /var/cache/pbuilder/result/ --debbuildopts  --no-targz --internal-chrootexec chroot /var/cache/pbuilder/build/cow.12652 cow-shell /home/bas/tmp/debian/abyss_1.9.0-2.dsc 
I: Running in no-targz mode
I: using fakeroot in build.
I: pbuilder: network access will be disabled during build
I: Current time: Wed Sep  7 20:43:54 CEST 2016
I: pbuilder-time-stamp: 1473273834
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: mounting /run/shm filesystem
I: mounting /dev/pts filesystem
I: policy-rc.d already exists
W: no hooks of type H found -- ignoring
I: Obtaining the cached apt archive contents
I: Installing the build-deps
W: no hooks of type D found -- ignoring
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 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint at lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper (>= 9), dh-autoreconf, libboost-graph-dev, libopenmpi-dev, libsparsehash-dev, libtext-multimarkdown-perl, libgtest-dev, libsqlite3-dev
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dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
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pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
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The following NEW packages will be installed:
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 gsegv2{a} libsparsehash-dev{a} libsqlite3-dev{a} libtext-markdown-perl{a} libtext-multimarkdown-perl{a} libtool{a} libunistring0{a} liburi-perl{a} libxml2{a} m4{a} man-db{a} ocl-icd-libopencl1{a} openmpi-common{a} po-debconf{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl libglib2.0-data libhttp-message-perl libmail-sendmail-perl lynx-cur openmpi-bin shared-mime-info wget xdg-user-dirs xml-core 
0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded.
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The following additional packages will be installed:
  libfakeroot
The following NEW packages will be installed:
  fakeroot libfakeroot
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I: Copying back the cached apt archive contents
I: new cache content 'libtext-multimarkdown-perl_1.000035-1_all.deb' added
I: new cache content 'libtext-markdown-perl_1.000031-2_all.deb' added
I: Copying source file
I: copying [/home/bas/tmp/debian/abyss_1.9.0-2.dsc]
I: copying [/home/bas/tmp/debian/abyss_1.9.0.orig.tar.gz]
I: copying [/home/bas/tmp/debian/abyss_1.9.0-2.debian.tar.xz]
I: Extracting source
dpkg-source: warning: extracting unsigned source package (abyss_1.9.0-2.dsc)
dpkg-source: info: extracting abyss in abyss-1.9.0
dpkg-source: info: unpacking abyss_1.9.0.orig.tar.gz
dpkg-source: info: unpacking abyss_1.9.0-2.debian.tar.xz
dpkg-source: info: applying abyss-pe.patch
dpkg-source: info: applying privacy-breach.patch
dpkg-source: info: applying abyss-32-bit.patch
dpkg-source: info: applying fix_bash_script.patch
I: Building the package
W: no hooks of type A found -- ignoring
I: Running cd /build/*/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin" HOME="/nonexistent" dpkg-buildpackage -us -uc -rfakeroot
dpkg-buildpackage: info: source package abyss
dpkg-buildpackage: info: source version 1.9.0-2
dpkg-buildpackage: info: source distribution UNRELEASED
dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
 dpkg-source --before-build abyss-1.9.0
dpkg-buildpackage: info: host architecture amd64
 fakeroot debian/rules clean
dh  clean --with autoreconf
   dh_testdir
   dh_auto_clean
   dh_autoreconf_clean
   dh_clean
 dpkg-source -b abyss-1.9.0
dpkg-source: info: using source format '3.0 (quilt)'
dpkg-source: info: building abyss using existing ./abyss_1.9.0.orig.tar.gz
dpkg-source: info: building abyss in abyss_1.9.0-2.debian.tar.xz
dpkg-source: info: building abyss in abyss_1.9.0-2.dsc
 debian/rules build
dh  build --with autoreconf
   dh_testdir
   dh_update_autotools_config
   dh_autoreconf
configure.ac:11: installing './compile'
configure.ac:141: installing './config.guess'
configure.ac:141: installing './config.sub'
configure.ac:5: installing './install-sh'
configure.ac:5: installing './missing'
ABYSS/Makefile.am: installing './depcomp'
parallel-tests: installing './test-driver'
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/abyss-1.9.0'
dh_auto_configure -- --with-mpi=/usr/lib/openmpi
	./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --with-mpi=/usr/lib/openmpi
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
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checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
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checking for style of include used by make... GNU
checking dependency style of gcc... none
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checking how to run the C++ preprocessor... g++ -E
checking functional usability... yes
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checking sqlite3.h usability... yes
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checking for main in -lsqlite3... yes
checking for g++ option to support OpenMP... -fopenmp
./configure: line 8392: test: too many arguments
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating ABYSS/Makefile
config.status: creating Align/Makefile
config.status: creating Assembly/Makefile
config.status: creating Common/Makefile
config.status: creating DataLayer/Makefile
config.status: creating FMIndex/Makefile
config.status: creating Graph/Makefile
config.status: creating Parallel/Makefile
config.status: creating bin/Makefile
config.status: creating doc/Makefile
config.status: creating dialign/Makefile
config.status: creating kmerprint/Makefile
config.status: creating AdjList/Makefile
config.status: creating Konnector/Makefile
config.status: creating DAssembler/Makefile
config.status: creating DistanceEst/Makefile
config.status: creating Layout/Makefile
config.status: creating Map/Makefile
config.status: creating Misc/Makefile
config.status: creating Overlap/Makefile
config.status: creating PopBubbles/Makefile
config.status: creating Scaffold/Makefile
config.status: creating SimpleGraph/Makefile
config.status: creating MergePaths/Makefile
config.status: creating KAligner/Makefile
config.status: creating PairedDBG/Makefile
config.status: creating ParseAligns/Makefile
config.status: creating PathOverlap/Makefile
config.status: creating Consensus/Makefile
config.status: creating FilterGraph/Makefile
config.status: creating GapFiller/Makefile
config.status: creating Sealer/Makefile
config.status: creating lib/gtest-1.7.0/Makefile
config.status: creating Unittest/Makefile
config.status: creating LogKmerCount/Makefile
config.status: creating Bloom/Makefile
config.status: creating DataBase/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/build/abyss-1.9.0'
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/abyss-1.9.0'
dh_auto_build --parallel
	make -j3
make[2]: Entering directory '/build/abyss-1.9.0'
make  all-recursive
make[3]: Entering directory '/build/abyss-1.9.0'
Making all in bin
make[4]: Entering directory '/build/abyss-1.9.0/bin'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/build/abyss-1.9.0/bin'
Making all in doc
make[4]: Entering directory '/build/abyss-1.9.0/doc'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/build/abyss-1.9.0/doc'
Making all in Common
make[4]: Entering directory '/build/abyss-1.9.0/Common'
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-ContigID.o `test -f 'ContigID.cpp' || echo './'`ContigID.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-Fcontrol.o `test -f 'Fcontrol.cpp' || echo './'`Fcontrol.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-Histogram.o `test -f 'Histogram.cpp' || echo './'`Histogram.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-Kmer.o `test -f 'Kmer.cpp' || echo './'`Kmer.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-Log.o `test -f 'Log.cpp' || echo './'`Log.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-Options.o `test -f 'Options.cpp' || echo './'`Options.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-Sequence.o `test -f 'Sequence.cpp' || echo './'`Sequence.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-SignalHandler.o `test -f 'SignalHandler.cpp' || echo './'`SignalHandler.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-Timer.o `test -f 'Timer.cpp' || echo './'`Timer.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-Uncompress.o `test -f 'Uncompress.cpp' || echo './'`Uncompress.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libcommon_a-city.o `test -f 'city.cc' || echo './'`city.cc
rm -f libcommon.a
ar cru libcommon.a libcommon_a-ContigID.o libcommon_a-Fcontrol.o libcommon_a-Histogram.o libcommon_a-Kmer.o libcommon_a-Log.o libcommon_a-Options.o libcommon_a-Sequence.o libcommon_a-SignalHandler.o libcommon_a-Timer.o libcommon_a-Uncompress.o libcommon_a-city.o 
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libcommon.a
make[4]: Leaving directory '/build/abyss-1.9.0/Common'
Making all in Graph
make[4]: Entering directory '/build/abyss-1.9.0/Graph'
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I../Common -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o abyss_gc-gc.o `test -f 'gc.cc' || echo './'`gc.cc
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I../Common -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o abyss_todot-todot.o `test -f 'todot.cc' || echo './'`todot.cc
g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security  -L/usr/lib/openmpi/lib   -Wl,-z,relro -o abyss-gc abyss_gc-gc.o ../Common/libcommon.a -ldl -lm 
g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -L. -L/usr/lib/openmpi/lib   -Wl,-z,relro -o abyss-todot abyss_todot-todot.o ../Common/libcommon.a -ldl -lm 
make[4]: Leaving directory '/build/abyss-1.9.0/Graph'
Making all in DataLayer
make[4]: Entering directory '/build/abyss-1.9.0/DataLayer'
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libdatalayer_a-FastaReader.o `test -f 'FastaReader.cpp' || echo './'`FastaReader.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libdatalayer_a-FastaWriter.o `test -f 'FastaWriter.cpp' || echo './'`FastaWriter.cpp
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o abyss_fac-fac.o `test -f 'fac.cc' || echo './'`fac.cc
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o abyss_tofastq-abyss-tofastq.o `test -f 'abyss-tofastq.cc' || echo './'`abyss-tofastq.cc
rm -f libdatalayer.a
ar cru libdatalayer.a libdatalayer_a-FastaReader.o libdatalayer_a-FastaWriter.o 
ar: `u' modifier ignored since `D' is the default (see `U')
ranlib libdatalayer.a
g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security  -L/usr/lib/openmpi/lib   -Wl,-z,relro -o abyss-tofastq abyss_tofastq-abyss-tofastq.o libdatalayer.a ../Common/libcommon.a -ldl -lm 
g++ -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security  -L/usr/lib/openmpi/lib   -Wl,-z,relro -o abyss-fac abyss_fac-fac.o libdatalayer.a ../Common/libcommon.a -ldl -lm 
make[4]: Leaving directory '/build/abyss-1.9.0/DataLayer'
Making all in DataBase
make[4]: Entering directory '/build/abyss-1.9.0/DataBase'
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libdb_a-DB.o `test -f 'DB.cc' || echo './'`DB.cc
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o abyss_db_csv-DB.o `test -f 'DB.cc' || echo './'`DB.cc
g++ -DHAVE_CONFIG_H -I. -I..  -I.. -I/build/abyss-1.9.0  -isystem/usr/lib/openmpi/include   -Wdate-time -D_FORTIFY_SOURCE=2 -isystem/build/abyss-1.9.0/boost_1_56_0 -Wall -Wextra -g -O2 -fdebug-prefix-map=/build/abyss-1.9.0=. -fstack-protector-strong -Wformat -Werror=format-security -c -o abyss_db_csv-db-csv.o `test -f 'db-csv.cc' || echo './'`db-csv.cc
db-csv.cc: In function 'bool existFile(const char*)':
db-csv.cc:23:9: error: cannot convert 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in return
  return file;
         ^~~~
Makefile:527: recipe for target 'abyss_db_csv-db-csv.o' failed
make[4]: *** [abyss_db_csv-db-csv.o] Error 1
make[4]: *** Waiting for unfinished jobs....
make[4]: Leaving directory '/build/abyss-1.9.0/DataBase'
Makefile:484: recipe for target 'all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory '/build/abyss-1.9.0'
Makefile:404: recipe for target 'all' failed
make[2]: *** [all] Error 2
make[2]: Leaving directory '/build/abyss-1.9.0'
dh_auto_build: make -j3 returned exit code 2
debian/rules:12: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/build/abyss-1.9.0'
debian/rules:6: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
I: copying local configuration
E: Failed autobuilding of package
W: no hooks of type C found -- ignoring
I: unmounting dev/pts filesystem
I: unmounting run/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
 -> Cleaning COW directory
  forking: rm -rf /var/cache/pbuilder/build/cow.12652