[Debian-med-packaging] debian-med_2.3_amd64.changes ACCEPTED into unstable, unstable

Debian FTP Masters ftpmaster at ftp-master.debian.org
Tue Sep 13 11:00:12 UTC 2016



Accepted:

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Mon, 12 Sep 2016 10:03:11 +0200
Source: debian-med
Binary: med-tasks med-config med-all med-bio med-bio-dev med-cloud med-data med-dental med-epi med-his med-imaging med-imaging-dev med-laboratory med-oncology med-pharmacy med-physics med-practice med-psychology med-rehabilitation med-statistics med-tools med-typesetting
Architecture: source all
Version: 2.3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Andreas Tille <tille at debian.org>
Description:
 med-all    - Default selection of tasks for Debian Med
 med-bio    - Debian Med bioinformatics packages
 med-bio-dev - Debian Med packages for development of bioinformatics application
 med-cloud  - Debian Med bioinformatics applications usable in cloud computing
 med-config - Debian Med general config package
 med-data   - Debian Med drug databases
 med-dental - Debian Med packages related to dental practice
 med-epi    - Debian Med epidemiology related packages
 med-his    - Debian Med suggestions for Hospital Information Systems
 med-imaging - Debian Med image processing and visualization packages
 med-imaging-dev - Debian Med image processing and visualization packages developmen
 med-laboratory - Debian Med suggestions for medical laboratories
 med-oncology - Debian Med packages for oncology
 med-pharmacy - Debian Med packages for pharmaceutical research
 med-physics - Debian Med packages for medical physicists
 med-practice - Debian Med packages for practice management
 med-psychology - Debian Med packages for psychology
 med-rehabilitation - Debian Med packages for rehabilitation technologies
 med-statistics - Debian Med statistics
 med-tasks  - Debian Med tasks for tasksel
 med-tools  - Debian Med several tools
 med-typesetting - Debian Med support for typesetting and publishing
Closes: 732069
Changes:
 debian-med (2.3) unstable; urgency=medium
 .
   * blends-dev 0.6.93 does not add single packages to tasksel control file
     but only the metapackage itself
   * med-bio: Add mgltools-pmv, mgltools-vision, mgltools-cadd
     Closes: #732069
 .
   * start of automatic changelog entry *
 .
   * Changes in metapackage dependencies
    -med-tools
     added:
       Depends:  galileo, r-cran-fitbitscraper
       Suggests:  sleepyhead
    -med-statistics
     added:
       Depends:  r-cran-ade4, rstudio, r-bioc-multtest
    -med-bio-ngs
     added:
       Depends:  sprai, rna-star, daligner, mhap, dindel, blasr, bcftools
    -med-bio
     added:
       Depends:  pbbarcode, spaced, varmatch, cgview, phipack, ffp,
                 snap-aligner, plast, kineticstools, brig, harvest-tools,
                 transrate-tools, meryl, metabit, parsnp, beagle, maffilter,
                 pbhoney, jmodeltest, mgltools-cadd, roadtrips, roary,
                 sim4db, alter-sequence-alignment, graphlan,
                 ncbi-entrez-direct, falconkit, partitionfinder,
                 art-nextgen-simulation-tools, sspace, phybin, fastahack,
                 phylophlan, crux-toolkit, varna, dindel, smithwaterman,
                 r-bioc-geneplotter, dawg, lefse, r-bioc-deseq2, fsm-lite,
                 nanopolish, physamp, minimap, kmc, snpomatic, proteinortho,
                 phast, prottest, qualimap, sprai, fml-asm, circlator, inspect,
                 pipasic, hilive, mgltools-pmv, fastqtl, piler,
                 r-cran-adephylo, r-cran-pscbs, hisat2, ssw-align, garli, pssh2,
                 plink1.9, r-cran-adegenet, velvet | velvet-long, condetri,
                 fastml, mapdamage, rsat, r-cran-distory, segemehl, andi,
                 ncl-tools, sumaclust, sniffles, pbalign, scrm, miniasm,
                 poretools, sparta, pbh5tools, r-cran-bio3d, kronatools,
                 beast2-mcmc, clustalw, dwgsim, pirs, reapr, r-cran-treescape,
                 leaff, seer, surankco, tide, placnet, canu, rambo-k, lofreq,
                 artfastqgenerator, lambda-align, rapmap, metaphlan2,
                 r-bioc-dnacopy, mgltools-vision, indelible, salmon, dazzdb,
                 srst2, king-probe, cutadapt, pbgenomicconsensus, ariba,
                 pbsuite, adapterremoval, kraken, pbjelly, mash, fermi-lite,
                 pbsim, bcftools
       Suggests: science-workflow, r-bioc-aroma.light, r-cran-pheatmap, mrs,
                 r-bioc-annotationhub, r-bioc-ensembldb, r-bioc-go.db
     removed:
       Depends:  python-kineticstools, r-other-bio3d, velvet, tigr-assembler,
                 clustalw | clustalw-mpi, python-pbalign, wgsim, wgs-assembler,
                 mrs, act, r8s, fastml2
    -med-his
     added:
       Depends:  openmaxims
    -med-practice
     added:
       Depends:  sleepyhead, orthanc
     removed:
       Depends:  clinica
    -med-imaging-dev
     added:
       Depends:  libinsighttoolkit4-dev, octave-bart, libvtk-dicom-dev,
                 libbart-dev, libodil0-dev, libmia-2.4-dev, libcamitk4-dev,
                 libopenigtlink-dev, libvtk6-dev
       Suggests: libcamp0.7-dev, libfreeimage-dev
     removed:
       Depends:  libopenigtlink1-dev, libactiviz.net-cil, libvtk5-dev,
                 libinsighttoolkit3-dev | libinsighttoolkit4-dev,
                 libvtk-dicom0.5-dev, libmia-2.2-dev, libcamitk3-dev
       Suggests: libvtk5.4, insighttoolkit3-examples
    -med-imaging
     added:
       Depends:  fw4spl, python-tifffile, bart
       Suggests: science-workflow, orthanc-postgresql, orthanc-imagej,
                 orthanc-dicomweb
     removed:
       Depends:  tifffile
    -med-data
     added:
       Suggests: sleepyhead
    -med-bio-phylogeny
     added:
       Depends:  iqtree, clustalw
     removed:
       Depends:  clustalw | clustalw-mpi
    -med-bio-dev
     added:
       Depends:  python3-pyvcf | python-pyvcf, libsmithwaterman-dev,
                 mgltools-vision, libbpp-phyl-omics-dev,
                 python3-csb | python-csb, libqcpp-dev, libbio-das-lite-perl,
                 libhtsjdk-java, libqes-dev,
                 python3-biopython | python-biopython, python-kineticstools,
                 libfreecontact-dev, libssw-dev, libminimap-dev, r-cran-rnexml,
                 libssw-java, r-cran-rncl, python3-pymummer,
                 python3-ngs | python-ngs, libpbdata-dev, libbpp-raa-dev,
                 python3-pbconsensuscore | python-pbconsensuscore, libblasr-dev,
                 libbpp-qt-dev,
                 python3-intervaltree-bio | python-intervaltree-bio, libncl-dev,
                 libngs-java, python3-pyfaidx | python-pyfaidx, libbpp-seq-dev,
                 libfast5-dev, r-cran-phylobase, python-pbcommand,
                 libncbi-vdb-dev, libbpp-core-dev, libpbbam-dev,
                 libconsensuscore-dev, libpbihdf-dev, libtabixpp-dev,
                 python3-pyfasta | python-pyfasta, libbpp-phyl-dev, libfml-dev,
                 python3-consensuscore2 | python-consensuscore2,
                 mgltools-networkeditor, libpbseq-dev, libgff-dev,
                 libngs-sdk-dev, octave-bioinfo, libbpp-popgen-dev,
                 mgltools-pybabel, libfastahack-dev, ruby-crb-blast,
                 libbpp-seq-omics-dev
       Suggests: python3-biopython-sql | python-biopython-sql, libdisorder-dev,
                 libbam-dev
     removed:
       Depends:  libgbfp-dev, python-biopython | python3-biopython, libtabixpp,
                 libfreecontact0-dev, python-csb | python3-csb, libbio-das-perl
       Suggests: python-biopython-sql | python3-biopython-sql
    -med-epi
     added:
       Suggests:  r-cran-cmprsk
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Files:
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