[Debian-med-packaging] Bug#848236: Remaining issue with gbrowse - any help (Was: Urgent call to BioPerl users (Was: Bug#848236: src:gbrowse: ...)

[Scott Cain]

I made a few changes in a branch off that security-bug-fixes branch that
quieted several warning messages, though I still need to sort out at least
one problem (the memory adaptor doesn't seem to be reading fasta files, but
also doesn't emit a warning about a problem).  Lincoln, if you want to look
at this pull request, you could pull those changes into the security bug
fix branch:

https://github.com/GMOD/GBrowse/pull/59

Scott


On Thu, Jan 12, 2017 at 1:57 PM, Lincoln Stein <lincoln.stein at gmail.com>
wrote:

> Hi Andreas,
>
> I was able to remove the vast majority of the warnings and other
> incompatibility issues, but need to do more testing to identify areas of
> the code that were not covered. How much time do I have? If you want to go
> with a fully functional version that may issue warnings when the user takes
> certain rare actions, it is the "security-bug-fixes" branch at
> https://github.com/GMOD/GBrowse
>
> Lincoln
>
> On Thu, Jan 12, 2017 at 1:39 PM, Andreas Tille <andreas at an3as.eu> wrote:
>
>> Hi Lincoln,
>>
>> On Wed, Dec 21, 2016 at 06:25:46PM -0500, Lincoln Stein wrote:
>> > I am devoting several days over the Christmas holidays to fixing the
>> > various outstanding bugs in gbrowse. Stay tuned!
>>
>> Did you managed to managed to work on this?  If not we probably can not
>> include gbrowse in the next Debian stable release which would be a
>> shame.
>>
>> Kind regards
>>
>>        Andreas.
>>
>> --
>> http://fam-tille.de
>>
>
>
>
> --
> *Lincoln Stein*
>
> Scientific Director (Interim), Ontario Institute for Cancer Research
> Director, Informatics and Bio-computing Program, OICR
> Senior Principal Investigator, OICR
> Professor, Department of Molecular Genetics, University of Toronto
>
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-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research
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