[Debian-med-packaging] Bug#868919: physamp: FTBFS: AlignmentOptimizer.cpp:39:32: fatal error: Bpp/Seq/Alphabet.all: No such file or directory

[Lucas Nussbaum]

Source: physamp
Version: 0.2.0-1
Severity: serious
Tags: buster sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20170719 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/physamp && /usr/bin/c++     -Wall -Weffc++ -Wshadow -Wconversion   -o CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o -c /<<PKGBUILDDIR>>/physamp/AlignmentOptimizer.cpp
> /<<PKGBUILDDIR>>/physamp/AlignmentOptimizer.cpp:39:32: fatal error: Bpp/Seq/Alphabet.all: No such file or directory
>  #include <Bpp/Seq/Alphabet.all>
>                                 ^
> compilation terminated.
> physamp/CMakeFiles/bppalnoptim.dir/build.make:65: recipe for target 'physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o' failed
> make[3]: *** [physamp/CMakeFiles/bppalnoptim.dir/AlignmentOptimizer.cpp.o] Error 1

The full build log is available from:
   http://aws-logs.debian.net/2017/07/19/physamp_0.2.0-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.