[Debian-med-packaging] Bug#864448: bowtie FTBFS on mips64el: /usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI

[Adrian Bunk]

Source: bowtie
Version: 1.2.0+dfsg-1
Severity: serious

https://buildd.debian.org/status/fetch.php?pkg=bowtie&arch=mips64el&ver=1.2.0%2Bdfsg-1&stamp=1496936597&raw=0

...
make[2]: Entering directory '/«BUILDDIR»/bowtie-1.2.0+dfsg'
g++ -w -O3 -DCOMPILER_OPTIONS="\"-O3  -Wl,--hash-style=both -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security  -g -O2 -fdebug-prefix-map=.=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now\""  -Wl,--hash-style=both -DWITH_TBB -DNO_SPINLOCK -DWITH_QUEUELOCK=1 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/«BUILDDIR»/bowtie-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -g -O2 -fdebug-prefix-map=/«BUILDDIR»/bowtie-1.2.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security  -Wl,-z,relro -Wl,-z,now  \
	-fno-strict-aliasing -DBOWTIE_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"Debian-reproducible\"" -DBUILD_TIME="\"`dpkg-parsechangelog --show-field Date`\"" -DCOMPILER_VERSION="\"`g++ -w -v 2>&1 | tail -1 | sed 's/ *(.*//'`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE  -DPREFETCH_LOCALITY=2 -DBOWTIE_MM -DBOWTIE_SHARED_MEM -DNDEBUG -Wall \
	-I /usr/include/seqan \
	-o bowtie-build-s ebwt_build.cpp \
	ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp ebwt.cpp  bowtie_build_main.cpp \
	-lpthread -ltbb -ltbbmalloc_proxy 
/usr/bin/ld: .gnu.hash is incompatible with the MIPS ABI
collect2: error: ld returned 1 exit status
Makefile:258: recipe for target 'bowtie-build-s' failed
make[2]: *** [bowtie-build-s] Error 1