[Debian-med-packaging] Bug#878837: sambamba: FTBFS with ldc 1.4.0

[Nobuhiro Iwamatsu]

Package: sambamba
Version: 0.6.6-1
Severity: serious
Tags: buster sid
Justification: FTBFS on amd64

Hi,

Dear Maintainer,

sambamba FTBFS with ldc 1.4.0 on sid.

https://buildd.debian.org/status/fetch.php?pkg=sambamba&arch=amd64&ver=0.6.6-1%2Bb1&stamp=1507088043&raw=0

-----
[1/74] ldc2  -Isambamba at exe -I. -I.. -I/usr/include/d/
-I/usr/include/htslib -enable-color -O3 -g -release  -of
'sambamba at exe/main.d.o' -c ../main.d
../sambamba/utils/common/readstorage.d(22): Deprecation: module
std.c.stdlib is deprecated - Import core.stdc.stdlib or
core.sys.posix.stdlib instead
../sambamba/utils/common/readstorage.d(23): Deprecation: module
std.c.string is deprecated - Import core.stdc.string instead
../sambamba/sort.d(45): Deprecation: module std.c.stdlib is deprecated
- Import core.stdc.stdlib or core.sys.posix.stdlib instead
../sambamba/sort.d(46): Deprecation: module std.c.string is deprecated
- Import core.stdc.string instead
../sambamba/markdup.d(37): Deprecation: module std.c.stdlib is
deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead
../sambamba/depth.d(1154): Deprecation: Implicit string concatenation
is deprecated, use "mapping_quality > 0 and " ~ "not duplicate and "
instead
../sambamba/depth.d(1155): Deprecation: Implicit string concatenation
is deprecated, use "not duplicate and " ~ "not failed_quality_control"
instead
[2/74] ldc2  -Isambamba at exe -I. -I.. -I/usr/include/d/
-I/usr/include/htslib -enable-color -O3 -g -release  -of
'sambamba at exe/sambamba_fixbins.d.o' -c ../sambamba/fixbins.d
[3/74] ldc2  -Isambamba at exe -I. -I.. -I/usr/include/d/
-I/usr/include/htslib -enable-color -O3 -g -release  -of
'sambamba at exe/sambamba_depth.d.o' -c ../sambamba/depth.d
FAILED: sambamba at exe/sambamba_depth.d.o
ldc2  -Isambamba at exe -I. -I.. -I/usr/include/d/ -I/usr/include/htslib
-enable-color -O3 -g -release  -of 'sambamba at exe/sambamba_depth.d.o'
-c ../sambamba/depth.d
../sambamba/depth.d(1154): Deprecation: Implicit string concatenation
is deprecated, use "mapping_quality > 0 and " ~ "not duplicate and "
instead
../sambamba/depth.d(1155): Deprecation: Implicit string concatenation
is deprecated, use "not duplicate and " ~ "not failed_quality_control"
instead
ldc2: /build/ldc-1.4.0/ir/irvar.cpp:44: IrGlobal*
getIrGlobal(VarDeclaration*, bool): Assertion `decl->ir->irGlobal !=
NULL' failed.
/usr/lib/x86_64-linux-gnu/libLLVM-5.0.so.1(_ZN4llvm3sys15PrintStackTraceERNS_11raw_ostreamE+0x1a)[0x7f4948132cea]
/usr/lib/x86_64-linux-gnu/libLLVM-5.0.so.1(_ZN4llvm3sys17RunSignalHandlersEv+0x56)[0x7f4948130fd6]
/usr/lib/x86_64-linux-gnu/libLLVM-5.0.so.1(+0x86e0f3)[0x7f49481310f3]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x110c0)[0x7f49472ab0c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcf)[0x7f494647bfff]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x16a)[0x7f494647d42a]
/lib/x86_64-linux-gnu/libc.so.6(+0x2be67)[0x7f4946474e67]
/lib/x86_64-linux-gnu/libc.so.6(+0x2bf12)[0x7f4946474f12]
-----

Perhaps this is not a problem with this package, but I think it is a
problem of Dlang.
Please forward if necessary.
     https://github.com/ldc-developers/ldc/issues/2357

Best regards,
  Nobuhiro


-- 
Nobuhiro Iwamatsu
   iwamatsu at {nigauri.org / debian.org}
   GPG ID: 40AD1FA6