[python-fabio] 07/31: Imported Upstream version 0.1.1
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Fri Dec 27 19:05:44 UTC 2013
This is an automated email from the git hooks/post-receive script.
picca pushed a commit to branch master
in repository python-fabio.
commit e97368d7f076c2bd8c4ba79a0a006f2392eb59b7
Author: Jerome Kieffer <jerome.kieffer at esrf.fr>
Date: Thu Aug 23 11:12:43 2012 +0200
Imported Upstream version 0.1.1
---
PKG-INFO | 2 +-
doc/fabio-api.pdf | Bin 605940 -> 0 bytes
doc/html/api-objects.txt | 1187 -------
doc/html/class-tree.html | 258 --
doc/html/crarr.png | Bin 340 -> 0 bytes
doc/html/epydoc.css | 322 --
doc/html/epydoc.js | 293 --
doc/html/fabio-module.html | 197 --
doc/html/fabio-pysrc.html | 123 -
doc/html/fabio.GEimage-module.html | 255 --
doc/html/fabio.GEimage-pysrc.html | 638 ----
doc/html/fabio.GEimage.GEimage-class.html | 565 ----
doc/html/fabio.GEimage_old-module.html | 174 -
doc/html/fabio.GEimage_old-pysrc.html | 1055 ------
doc/html/fabio.GEimage_old.GEimage-class.html | 368 --
doc/html/fabio.HiPiCimage-module.html | 177 -
doc/html/fabio.HiPiCimage-pysrc.html | 478 ---
doc/html/fabio.HiPiCimage.HiPiCimage-class.html | 369 --
doc/html/fabio.OXDimage-module.html | 335 --
doc/html/fabio.OXDimage-pysrc.html | 1026 ------
doc/html/fabio.OXDimage.OXDimage-class.html | 490 ---
doc/html/fabio.OXDimage.Section-class.html | 350 --
doc/html/fabio.TiffIO-module.html | 454 ---
doc/html/fabio.TiffIO-pysrc.html | 1786 ----------
doc/html/fabio.TiffIO.TiffIO-class.html | 524 ---
doc/html/fabio.adscimage-module.html | 211 --
doc/html/fabio.adscimage-pysrc.html | 473 ---
doc/html/fabio.adscimage.adscimage-class.html | 448 ---
doc/html/fabio.binaryimage-module.html | 249 --
doc/html/fabio.binaryimage-pysrc.html | 374 --
doc/html/fabio.binaryimage.binaryimage-class.html | 466 ---
doc/html/fabio.bruker100image-module.html | 161 -
doc/html/fabio.bruker100image-pysrc.html | 344 --
.../fabio.bruker100image.bruker100image-class.html | 375 --
doc/html/fabio.brukerimage-module.html | 212 --
doc/html/fabio.brukerimage-pysrc.html | 558 ---
doc/html/fabio.brukerimage.brukerimage-class.html | 449 ---
doc/html/fabio.byte_offset-module.html | 158 -
doc/html/fabio.cbfimage-module.html | 296 --
doc/html/fabio.cbfimage-pysrc.html | 1185 -------
doc/html/fabio.cbfimage.CIF-class.html | 1068 ------
doc/html/fabio.cbfimage.cbfimage-class.html | 554 ---
doc/html/fabio.cf_io-module.html | 205 --
doc/html/fabio.compression-module.html | 739 ----
doc/html/fabio.compression-pysrc.html | 927 -----
doc/html/fabio.converters-module.html | 375 --
doc/html/fabio.converters-pysrc.html | 195 --
doc/html/fabio.datIO-module.html | 179 -
doc/html/fabio.datIO-pysrc.html | 220 --
doc/html/fabio.datIO.columnfile-class.html | 243 --
doc/html/fabio.datIO.fabiodata-class.html | 269 --
doc/html/fabio.dm3image-module.html | 276 --
doc/html/fabio.dm3image-pysrc.html | 827 -----
doc/html/fabio.dm3image.dm3image-class.html | 491 ---
doc/html/fabio.edfimage-module.html | 342 --
doc/html/fabio.edfimage-pysrc.html | 1966 -----------
doc/html/fabio.edfimage.Frame-class.html | 471 ---
doc/html/fabio.edfimage.edfimage-class.html | 1671 ---------
doc/html/fabio.fabioimage-module.html | 221 --
doc/html/fabio.fabioimage-pysrc.html | 1214 -------
doc/html/fabio.fabioimage.fabioStream-class.html | 218 --
doc/html/fabio.fabioimage.fabioimage-class.html | 991 ------
doc/html/fabio.fabioutils-module.html | 598 ----
doc/html/fabio.fabioutils-pysrc.html | 487 ---
.../fabio.fabioutils.filename_object-class.html | 182 -
doc/html/fabio.file_series-module.html | 320 --
doc/html/fabio.file_series-pysrc.html | 630 ----
doc/html/fabio.file_series.file_series-class.html | 642 ----
.../fabio.file_series.filename_series-class.html | 350 --
...bio.file_series.numbered_file_series-class.html | 339 --
doc/html/fabio.fit2dmaskimage-module.html | 158 -
doc/html/fabio.fit2dmaskimage-pysrc.html | 281 --
.../fabio.fit2dmaskimage.fit2dmaskimage-class.html | 453 ---
doc/html/fabio.fit2dspreadsheetimage-module.html | 162 -
doc/html/fabio.fit2dspreadsheetimage-pysrc.html | 244 --
...readsheetimage.fit2dspreadsheetimage-class.html | 369 --
doc/html/fabio.kcdimage-module.html | 238 --
doc/html/fabio.kcdimage-pysrc.html | 410 ---
doc/html/fabio.kcdimage.kcdimage-class.html | 411 ---
doc/html/fabio.mar345_IO-module.html | 165 -
doc/html/fabio.mar345image-module.html | 235 --
doc/html/fabio.mar345image-pysrc.html | 784 -----
doc/html/fabio.mar345image.mar345image-class.html | 571 ----
doc/html/fabio.marccdimage-module.html | 416 ---
doc/html/fabio.marccdimage-pysrc.html | 534 ---
doc/html/fabio.marccdimage.marccdimage-class.html | 368 --
doc/html/fabio.openimage-module.html | 298 --
doc/html/fabio.openimage-pysrc.html | 665 ----
doc/html/fabio.pilatusimage-module.html | 172 -
doc/html/fabio.pilatusimage-pysrc.html | 237 --
.../fabio.pilatusimage.pilatusimage-class.html | 367 --
doc/html/fabio.pnmimage-module.html | 231 --
doc/html/fabio.pnmimage-pysrc.html | 487 ---
doc/html/fabio.pnmimage.pnmimage-class.html | 614 ----
doc/html/fabio.readbytestream-module.html | 312 --
doc/html/fabio.readbytestream-pysrc.html | 241 --
doc/html/fabio.tifimage-module.html | 405 ---
doc/html/fabio.tifimage-pysrc.html | 706 ----
.../fabio.tifimage.Image_File_Directory-class.html | 256 --
....tifimage.Image_File_Directory_entry-class.html | 276 --
doc/html/fabio.tifimage.Tiff_header-class.html | 236 --
doc/html/fabio.tifimage.tifimage-class.html | 465 ---
doc/html/fabio.xsdimage-module.html | 184 -
doc/html/fabio.xsdimage-pysrc.html | 443 ---
doc/html/fabio.xsdimage.xsdimage-class.html | 419 ---
doc/html/frames.html | 17 -
doc/html/help.html | 268 --
doc/html/identifier-index.html | 1649 ---------
doc/html/index.html | 17 -
doc/html/module-tree.html | 147 -
doc/html/redirect.html | 38 -
doc/html/str-class.html | 2113 ------------
doc/html/toc-everything.html | 242 --
doc/html/toc-fabio-module.html | 32 -
doc/html/toc-fabio.GEimage-module.html | 37 -
doc/html/toc-fabio.GEimage_old-module.html | 33 -
doc/html/toc-fabio.HiPiCimage-module.html | 34 -
doc/html/toc-fabio.OXDimage-module.html | 40 -
doc/html/toc-fabio.TiffIO-module.html | 58 -
doc/html/toc-fabio.adscimage-module.html | 36 -
doc/html/toc-fabio.binaryimage-module.html | 35 -
doc/html/toc-fabio.bruker100image-module.html | 34 -
doc/html/toc-fabio.brukerimage-module.html | 36 -
doc/html/toc-fabio.byte_offset-module.html | 32 -
doc/html/toc-fabio.cbfimage-module.html | 39 -
doc/html/toc-fabio.cf_io-module.html | 33 -
doc/html/toc-fabio.compression-module.html | 50 -
doc/html/toc-fabio.converters-module.html | 38 -
doc/html/toc-fabio.datIO-module.html | 34 -
doc/html/toc-fabio.dm3image-module.html | 36 -
doc/html/toc-fabio.edfimage-module.html | 40 -
doc/html/toc-fabio.fabioimage-module.html | 37 -
doc/html/toc-fabio.fabioutils-module.html | 51 -
doc/html/toc-fabio.file_series-module.html | 39 -
doc/html/toc-fabio.fit2dmaskimage-module.html | 33 -
.../toc-fabio.fit2dspreadsheetimage-module.html | 33 -
doc/html/toc-fabio.kcdimage-module.html | 37 -
doc/html/toc-fabio.mar345_IO-module.html | 32 -
doc/html/toc-fabio.mar345image-module.html | 35 -
doc/html/toc-fabio.marccdimage-module.html | 43 -
doc/html/toc-fabio.openimage-module.html | 40 -
doc/html/toc-fabio.pilatusimage-module.html | 33 -
doc/html/toc-fabio.pnmimage-module.html | 37 -
doc/html/toc-fabio.readbytestream-module.html | 35 -
doc/html/toc-fabio.tifimage-module.html | 43 -
doc/html/toc-fabio.xsdimage-module.html | 34 -
doc/html/toc.html | 65 -
fabio-src/fabioutils.py | 284 --
fabio.egg-info/SOURCES.txt | 222 --
{fabio-src => fabio}/GEimage.py | 0
{fabio-src => fabio}/GEimage_old.py | 0
{fabio-src => fabio}/HiPiCimage.py | 0
{fabio-src => fabio}/OXDimage.py | 0
{fabio-src => fabio}/TiffIO.py | 0
{fabio-src => fabio}/__init__.py | 4 +-
{fabio-src => fabio}/adscimage.py | 0
{fabio-src => fabio}/binaryimage.py | 0
{fabio-src => fabio}/bruker100image.py | 2 +-
{fabio-src => fabio}/brukerimage.py | 0
{fabio-src => fabio}/cbfimage.py | 34 +-
{fabio-src => fabio}/compression.py | 0
{fabio-src => fabio}/converters.py | 0
{fabio-src => fabio}/datIO.py | 0
{fabio-src => fabio}/dm3image.py | 0
{fabio-src => fabio}/edfimage.py | 192 +-
{fabio-src => fabio}/fabioimage.py | 71 +-
fabio/fabioutils.py | 497 +++
{fabio-src => fabio}/file_series.py | 0
{fabio-src => fabio}/fit2dmaskimage.py | 0
{fabio-src => fabio}/fit2dspreadsheetimage.py | 0
{fabio-src => fabio}/kcdimage.py | 0
{fabio-src => fabio}/mar345image.py | 0
{fabio-src => fabio}/marccdimage.py | 0
{fabio-src => fabio}/openimage.py | 0
{fabio-src => fabio}/pilatusimage.py | 0
{fabio-src => fabio}/pnmimage.py | 0
{fabio-src => fabio}/readbytestream.py | 0
{fabio-src => fabio}/tifimage.py | 0
{fabio-src => fabio}/xsdimage.py | 0
setup.py | 5 +-
src/pack_c.c | 1521 +++++++++
src/pack_c.h | 140 +
src/setup.py | 2 +-
stdeb.cfg | 2 +-
test/coral31_benchheaders | 46 +
test/coral31_benchmark | 53 +
test/eeepc-jonathanw_benchheaders | 46 +
test/eeepc-jonathanw_benchmark | 53 +
test/esrflinux1-1a_benchheaders | 46 +
test/esrflinux1-1a_benchmark | 3563 ++++++++++++++++++++
test/get_test_images.sh | 36 +
test/lapwright_benchheaders | 47 +
test/lapwright_benchmark | 54 +
test/lintaillefer_benchHeaders | 95 +
test/profile/benchheader.py | 21 +
test/profile/coral31_benchheaders | 46 +
test/profile/coral31_benchmark | 53 +
test/profile/eeepc-jonathanw_benchheaders | 46 +
test/profile/eeepc-jonathanw_benchmark | 53 +
test/profile/esrflinux1-1a_benchheaders | 46 +
test/profile/esrflinux1-1a_benchmark | 3563 ++++++++++++++++++++
test/profile/get_test_images.sh | 36 +
test/profile/lapwright_benchheaders | 47 +
test/profile/lapwright_benchmark | 54 +
test/profile/lintaillefer_benchHeaders | 95 +
test/profile/profile_compressed.py | 131 +
test/profile/win32_benchheaders | 46 +
test/profile/win32_benchmark | 3285 ++++++++++++++++++
test/test_all.bat | 26 +
test/test_all.sh | 32 +
test/testcbfimage.py | 51 +
test/testedfimage.py | 26 +-
test/win32_benchheaders | 46 +
test/win32_benchmark | 3285 ++++++++++++++++++
214 files changed, 17369 insertions(+), 53837 deletions(-)
diff --git a/PKG-INFO b/PKG-INFO
index 27a2c50..6ace28f 100644
--- a/PKG-INFO
+++ b/PKG-INFO
@@ -1,6 +1,6 @@
Metadata-Version: 1.0
Name: fabio
-Version: 0.1.0
+Version: 0.1.1
Summary: Image IO for fable
Home-page: http://fable.wiki.sourceforge.net/fabio
Author: Henning Sorensen, Erik Knudsen, Jon Wright, Regis Perdreau, Jérôme Kieffer and Gael Goret
diff --git a/doc/fabio-api.pdf b/doc/fabio-api.pdf
deleted file mode 100644
index fadffdf..0000000
Binary files a/doc/fabio-api.pdf and /dev/null differ
diff --git a/doc/html/api-objects.txt b/doc/html/api-objects.txt
deleted file mode 100644
index 16a9041..0000000
--- a/doc/html/api-objects.txt
+++ /dev/null
@@ -1,1187 +0,0 @@
-fabio fabio-module.html
-fabio.getnum fabio.fabioutils-module.html#getnum
-fabio.construct_filename fabio.fabioutils-module.html#construct_filename
-fabio.open fabio.openimage-module.html#openimage
-fabio.deconstruct_filename fabio.fabioutils-module.html#deconstruct_filename
-fabio.__package__ fabio-module.html#__package__
-fabio.version fabio-module.html#version
-fabio.next_filename fabio.fabioutils-module.html#next_filename
-fabio.extract_filenumber fabio.fabioutils-module.html#extract_filenumber
-fabio.previous_filename fabio.fabioutils-module.html#previous_filename
-fabio.jump_filename fabio.fabioutils-module.html#jump_filename
-fabio.GEimage fabio.GEimage-module.html
-fabio.GEimage.previous_filename fabio.fabioutils-module.html#previous_filename
-fabio.GEimage.GE_HEADER_INFO fabio.GEimage-module.html#GE_HEADER_INFO
-fabio.GEimage.__package__ fabio.GEimage-module.html#__package__
-fabio.GEimage.next_filename fabio.fabioutils-module.html#next_filename
-fabio.GEimage.demo fabio.GEimage-module.html#demo
-fabio.GEimage.logger fabio.GEimage-module.html#logger
-fabio.GEimage_old fabio.GEimage_old-module.html
-fabio.GEimage_old.__package__ fabio.GEimage_old-module.html#__package__
-fabio.HiPiCimage fabio.HiPiCimage-module.html
-fabio.HiPiCimage.__package__ fabio.HiPiCimage-module.html#__package__
-fabio.HiPiCimage.logger fabio.HiPiCimage-module.html#logger
-fabio.OXDimage fabio.OXDimage-module.html
-fabio.OXDimage.deg2rad fabio.OXDimage-module.html#deg2rad
-fabio.OXDimage.rad2deg fabio.OXDimage-module.html#rad2deg
-fabio.OXDimage.__package__ fabio.OXDimage-module.html#__package__
-fabio.OXDimage.decTY1 fabio.compression-module.html#decTY1
-fabio.OXDimage.__doc__ fabio.OXDimage-module.html#__doc__
-fabio.OXDimage.compTY1 fabio.compression-module.html#compTY1
-fabio.OXDimage.logger fabio.OXDimage-module.html#logger
-fabio.OXDimage.DEFAULT_HEADERS fabio.OXDimage-module.html#DEFAULT_HEADERS
-fabio.OXDimage.DETECTOR_TYPES fabio.OXDimage-module.html#DETECTOR_TYPES
-fabio.TiffIO fabio.TiffIO-module.html
-fabio.TiffIO.FIELD_TYPE fabio.TiffIO-module.html#FIELD_TYPE
-fabio.TiffIO.FIELD_TYPE_OUT fabio.TiffIO-module.html#FIELD_TYPE_OUT
-fabio.TiffIO.TAG_ROWS_PER_STRIP fabio.TiffIO-module.html#TAG_ROWS_PER_STRIP
-fabio.TiffIO.TAG_PHOTOMETRIC_INTERPRETATION fabio.TiffIO-module.html#TAG_PHOTOMETRIC_INTERPRETATION
-fabio.TiffIO.TAG_IMAGE_DESCRIPTION fabio.TiffIO-module.html#TAG_IMAGE_DESCRIPTION
-fabio.TiffIO.TAG_COMPRESSION fabio.TiffIO-module.html#TAG_COMPRESSION
-fabio.TiffIO.TAG_DATE fabio.TiffIO-module.html#TAG_DATE
-fabio.TiffIO.TAG_SOFTWARE fabio.TiffIO-module.html#TAG_SOFTWARE
-fabio.TiffIO.TAG_NUMBER_OF_ROWS fabio.TiffIO-module.html#TAG_NUMBER_OF_ROWS
-fabio.TiffIO.TAG_BITS_PER_SAMPLE fabio.TiffIO-module.html#TAG_BITS_PER_SAMPLE
-fabio.TiffIO.TAG_COLORMAP fabio.TiffIO-module.html#TAG_COLORMAP
-fabio.TiffIO.__package__ fabio.TiffIO-module.html#__package__
-fabio.TiffIO.SAMPLE_FORMAT_COMPLEXIEEEFP fabio.TiffIO-module.html#SAMPLE_FORMAT_COMPLEXIEEEFP
-fabio.TiffIO.TAG_NUMBER_OF_COLUMNS fabio.TiffIO-module.html#TAG_NUMBER_OF_COLUMNS
-fabio.TiffIO.SAMPLE_FORMAT_INT fabio.TiffIO-module.html#SAMPLE_FORMAT_INT
-fabio.TiffIO.__revision__ fabio.TiffIO-module.html#__revision__
-fabio.TiffIO.SAMPLE_FORMAT_FLOAT fabio.TiffIO-module.html#SAMPLE_FORMAT_FLOAT
-fabio.TiffIO.SAMPLE_FORMAT_VOID fabio.TiffIO-module.html#SAMPLE_FORMAT_VOID
-fabio.TiffIO.TAG_SAMPLE_FORMAT fabio.TiffIO-module.html#TAG_SAMPLE_FORMAT
-fabio.TiffIO.TAG_STRIP_OFFSETS fabio.TiffIO-module.html#TAG_STRIP_OFFSETS
-fabio.TiffIO.SAMPLE_FORMAT_UINT fabio.TiffIO-module.html#SAMPLE_FORMAT_UINT
-fabio.TiffIO.DEBUG fabio.TiffIO-module.html#DEBUG
-fabio.TiffIO.TAG_ID fabio.TiffIO-module.html#TAG_ID
-fabio.TiffIO.TAG_STRIP_BYTE_COUNTS fabio.TiffIO-module.html#TAG_STRIP_BYTE_COUNTS
-fabio.TiffIO.SAMPLE_FORMAT_COMPLEXINT fabio.TiffIO-module.html#SAMPLE_FORMAT_COMPLEXINT
-fabio.TiffIO.ALLOW_MULTIPLE_STRIPS fabio.TiffIO-module.html#ALLOW_MULTIPLE_STRIPS
-fabio.adscimage fabio.adscimage-module.html
-fabio.adscimage.__package__ fabio.adscimage-module.html#__package__
-fabio.adscimage.test fabio.adscimage-module.html#test
-fabio.adscimage.logger fabio.adscimage-module.html#logger
-fabio.binaryimage fabio.binaryimage-module.html
-fabio.binaryimage.__package__ fabio.binaryimage-module.html#__package__
-fabio.binaryimage.logger fabio.binaryimage-module.html#logger
-fabio.binaryimage.__doc__ fabio.binaryimage-module.html#__doc__
-fabio.bruker100image fabio.bruker100image-module.html
-fabio.bruker100image.__package__ fabio.bruker100image-module.html#__package__
-fabio.bruker100image.logger fabio.bruker100image-module.html#logger
-fabio.brukerimage fabio.brukerimage-module.html
-fabio.brukerimage.__package__ fabio.brukerimage-module.html#__package__
-fabio.brukerimage.readbytestream fabio.readbytestream-module.html#readbytestream
-fabio.brukerimage.test fabio.brukerimage-module.html#test
-fabio.brukerimage.logger fabio.brukerimage-module.html#logger
-fabio.byte_offset fabio.byte_offset-module.html
-fabio.byte_offset.__package__ fabio.byte_offset-module.html#__package__
-fabio.byte_offset.__test__ fabio.byte_offset-module.html#__test__
-fabio.cbfimage fabio.cbfimage-module.html
-fabio.cbfimage.compByteOffet_numpy fabio.compression-module.html#compByteOffet_numpy
-fabio.cbfimage.__package__ fabio.cbfimage-module.html#__package__
-fabio.cbfimage.DATA_TYPES fabio.cbfimage-module.html#DATA_TYPES
-fabio.cbfimage.logger fabio.cbfimage-module.html#logger
-fabio.cbfimage.STARTER fabio.cbfimage-module.html#STARTER
-fabio.cbfimage.decByteOffet_python fabio.compression-module.html#decByteOffet_python
-fabio.cbfimage.decByteOffet_numpy fabio.compression-module.html#decByteOffet_numpy
-fabio.cbfimage.decByteOffet_weave fabio.compression-module.html#decByteOffet_weave
-fabio.cbfimage.md5sum fabio.compression-module.html#md5sum
-fabio.cbfimage.MINIMUM_KEYS fabio.cbfimage-module.html#MINIMUM_KEYS
-fabio.cbfimage.PADDING fabio.cbfimage-module.html#PADDING
-fabio.cf_io fabio.cf_io-module.html
-fabio.cf_io.read fabio.cf_io-module.html#read
-fabio.cf_io.__package__ fabio.cf_io-module.html#__package__
-fabio.compression fabio.compression-module.html
-fabio.compression.compByteOffet_numpy fabio.compression-module.html#compByteOffet_numpy
-fabio.compression.decTY1 fabio.compression-module.html#decTY1
-fabio.compression.decBzip2 fabio.compression-module.html#decBzip2
-fabio.compression.decKM4CCD fabio.compression-module.html#decKM4CCD
-fabio.compression.__package__ fabio.compression-module.html#__package__
-fabio.compression.decZlib fabio.compression-module.html#decZlib
-fabio.compression.endianness fabio.compression-module.html#endianness
-fabio.compression.logger fabio.compression-module.html#logger
-fabio.compression.decPCK fabio.compression-module.html#decPCK
-fabio.compression.decGzip fabio.compression-module.html#decGzip
-fabio.compression.decByteOffet_python fabio.compression-module.html#decByteOffet_python
-fabio.compression.decByteOffet_numpy fabio.compression-module.html#decByteOffet_numpy
-fabio.compression.decByteOffet_weave fabio.compression-module.html#decByteOffet_weave
-fabio.compression.md5sum fabio.compression-module.html#md5sum
-fabio.compression.compTY1 fabio.compression-module.html#compTY1
-fabio.compression.decByteOffet_cython fabio.compression-module.html#decByteOffet_cython
-fabio.compression.compPCK fabio.compression-module.html#compPCK
-fabio.converters fabio.converters-module.html
-fabio.converters.convert_data_integer fabio.converters-module.html#convert_data_integer
-fabio.converters.convert_data fabio.converters-module.html#convert_data
-fabio.converters.CONVERSION_DATA fabio.converters-module.html#CONVERSION_DATA
-fabio.converters.convert_header fabio.converters-module.html#convert_header
-fabio.converters.CONVERSION_HEADER fabio.converters-module.html#CONVERSION_HEADER
-fabio.converters.logger fabio.converters-module.html#logger
-fabio.converters.__package__ fabio.converters-module.html#__package__
-fabio.datIO fabio.datIO-module.html
-fabio.datIO.__package__ fabio.datIO-module.html#__package__
-fabio.dm3image fabio.dm3image-module.html
-fabio.dm3image.DATA_BYTES fabio.dm3image-module.html#DATA_BYTES
-fabio.dm3image.__package__ fabio.dm3image-module.html#__package__
-fabio.dm3image.DATA_TYPES fabio.dm3image-module.html#DATA_TYPES
-fabio.dm3image.logger fabio.dm3image-module.html#logger
-fabio.edfimage fabio.edfimage-module.html
-fabio.edfimage.decBzip2 fabio.compression-module.html#decBzip2
-fabio.edfimage.BLOCKSIZE fabio.edfimage-module.html#BLOCKSIZE
-fabio.edfimage.MINIMUM_KEYS fabio.edfimage-module.html#MINIMUM_KEYS
-fabio.edfimage.decZlib fabio.compression-module.html#decZlib
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diff --git a/doc/html/class-tree.html b/doc/html/class-tree.html
deleted file mode 100644
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--- a/doc/html/class-tree.html
+++ /dev/null
@@ -1,258 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>Class Hierarchy</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th bgcolor="#70b0f0" class="navbar-select"
- > Trees </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%"> </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="class-tree.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<center><b>
- [ <a href="module-tree.html">Module Hierarchy</a>
- | <a href="class-tree.html">Class Hierarchy</a> ]
-</b></center><br />
-<h1 class="epydoc">Class Hierarchy</h1>
-<ul class="nomargin-top">
- <li> <strong class="uidlink">StringIO.StringIO</strong>:
- <em class="summary">class StringIO([buffer])</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.fabioimage.fabioStream-class.html">fabio.fabioimage.fabioStream</a></strong>:
- <em class="summary">just an interface providing the name and mode property to a
- StringIO</em>
- </li>
- </ul>
- </li>
- <li> <strong class="uidlink"><a href="fabio.fabioutils.filename_object-class.html">fabio.fabioutils.filename_object</a></strong>:
- <em class="summary">The 'meaning' of a filename</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.file_series.filename_series-class.html">fabio.file_series.filename_series</a></strong>:
- <em class="summary">Much like the others, but created from a string filename</em>
- </li>
- <li> <strong class="uidlink">object</strong>:
- <em class="summary">The most base type</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.edfimage.Frame-class.html">fabio.edfimage.Frame</a></strong>:
- <em class="summary">A class representing a single frame in an EDF file</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.tifimage.Image_File_Directory-class.html">fabio.tifimage.Image_File_Directory</a></strong>
- </li>
- <li> <strong class="uidlink"><a href="fabio.tifimage.Image_File_Directory_entry-class.html">fabio.tifimage.Image_File_Directory_entry</a></strong>
- </li>
- <li> <strong class="uidlink"><a href="fabio.OXDimage.Section-class.html">fabio.OXDimage.Section</a></strong>:
- <em class="summary">Small helper class for writing binary headers</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.TiffIO.TiffIO-class.html">fabio.TiffIO.TiffIO</a></strong>
- </li>
- <li> <strong class="uidlink"><a href="fabio.tifimage.Tiff_header-class.html">fabio.tifimage.Tiff_header</a></strong>
- </li>
- <li> <strong class="uidlink">basestring</strong>:
- <em class="summary">Type basestring cannot be instantiated; it is the base for str and
- unicode.</em>
- <ul>
- <li> <strong class="uidlink"><a href="str-class.html">str</a></strong>:
- <em class="summary">str(object) -> string</em>
- </li>
- </ul>
- </li>
- <li> <strong class="uidlink">dict</strong>:
- <em class="summary">dict() -> new empty dictionary
-dict(mapping) -> new dictionary initialized from a mapping object's
- (key, value) pairs
-dict(iterable) -> new dictionary initialized as if via:
- d = {}
- for k, v in iterable:
- d[k] = v
-dict(**kwargs) -> new dictionary initialized with the name=value pairs
- in the keyword argument list.</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.cbfimage.CIF-class.html">fabio.cbfimage.CIF</a></strong>:
- <em class="summary">This is the CIF class, it represents the CIF dictionary; and as a a
- python dictionary thus inherits from the dict built in class.</em>
- </li>
- </ul>
- </li>
- <li> <strong class="uidlink"><a href="fabio.datIO.fabiodata-class.html">fabio.datIO.fabiodata</a></strong>:
- <em class="summary">A common class for dataIO in fable Contains a 2d numpy array for
- keeping data, and two lists (clabels and rlabels) containing labels
- for columns and rows respectively</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.datIO.columnfile-class.html">fabio.datIO.columnfile</a></strong>:
- <em class="summary">Concrete fabiodata class</em>
- </li>
- </ul>
- </li>
- <li> <strong class="uidlink"><a href="fabio.fabioimage.fabioimage-class.html">fabio.fabioimage.fabioimage</a></strong>:
- <em class="summary">A common object for images in fable Contains a numpy array (.data)
- and dict of meta data (.header)</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.GEimage.GEimage-class.html">fabio.GEimage.GEimage</a></strong>
- </li>
- <li> <strong class="uidlink"><a href="fabio.GEimage_old.GEimage-class.html">fabio.GEimage_old.GEimage</a></strong>
- </li>
- <li> <strong class="uidlink"><a href="fabio.HiPiCimage.HiPiCimage-class.html">fabio.HiPiCimage.HiPiCimage</a></strong>:
- <em class="summary">Read HiPic images e.g.</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.OXDimage.OXDimage-class.html">fabio.OXDimage.OXDimage</a></strong>:
- <em class="summary">Oxford Diffraction Sapphire 3 images reader/writer class</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.adscimage.adscimage-class.html">fabio.adscimage.adscimage</a></strong>:
- <em class="summary">Read an image in ADSC format (quite similar to edf?)</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.binaryimage.binaryimage-class.html">fabio.binaryimage.binaryimage</a></strong>:
- <em class="summary">This simple library has been made for manipulating exotic/unknown
- files format.</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.brukerimage.brukerimage-class.html">fabio.brukerimage.brukerimage</a></strong>:
- <em class="summary">Read and eventually write ID11 bruker (eg smart6500) images</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.bruker100image.bruker100image-class.html">fabio.bruker100image.bruker100image</a></strong>
- </li>
- </ul>
- </li>
- <li> <strong class="uidlink"><a href="fabio.cbfimage.cbfimage-class.html">fabio.cbfimage.cbfimage</a></strong>:
- <em class="summary">Read the Cif Binary File data format</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.dm3image.dm3image-class.html">fabio.dm3image.dm3image</a></strong>:
- <em class="summary">Read and try to write the dm3 data format</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.edfimage.edfimage-class.html">fabio.edfimage.edfimage</a></strong>:
- <em class="summary">Read and try to write the ESRF edf data format</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html">fabio.fit2dmaskimage.fit2dmaskimage</a></strong>:
- <em class="summary">Read and try to write Andy Hammersley's mask format</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html">fabio.fit2dspreadsheetimage.fit2dspreadsheetimage</a></strong>:
- <em class="summary">Read a fit2d ascii format</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.kcdimage.kcdimage-class.html">fabio.kcdimage.kcdimage</a></strong>:
- <em class="summary">Read the Nonius kcd data format</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.mar345image.mar345image-class.html">fabio.mar345image.mar345image</a></strong>
- </li>
- <li> <strong class="uidlink"><a href="fabio.pnmimage.pnmimage-class.html">fabio.pnmimage.pnmimage</a></strong>
- </li>
- <li> <strong class="uidlink"><a href="fabio.tifimage.tifimage-class.html">fabio.tifimage.tifimage</a></strong>:
- <em class="summary">Images in TIF format Wraps TiffIO</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.marccdimage.marccdimage-class.html">fabio.marccdimage.marccdimage</a></strong>:
- <em class="summary">Read in data in mar ccd format, also MarMosaic images, including
- header info</em>
- </li>
- <li> <strong class="uidlink"><a href="fabio.pilatusimage.pilatusimage-class.html">fabio.pilatusimage.pilatusimage</a></strong>:
- <em class="summary">Read in Pilatus format, also pilatus images, including header info</em>
- </li>
- </ul>
- </li>
- <li> <strong class="uidlink"><a href="fabio.xsdimage.xsdimage-class.html">fabio.xsdimage.xsdimage</a></strong>:
- <em class="summary">Read the XSDataImage XML File data format</em>
- </li>
- </ul>
- </li>
- <li> <strong class="uidlink">list</strong>:
- <em class="summary">list() -> new empty list list(iterable) -> new list
- initialized from iterable's items</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.file_series.file_series-class.html">fabio.file_series.file_series</a></strong>:
- <em class="summary">represents a series of files to iterate
-has an idea of a current position to do next and prev</em>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.file_series.numbered_file_series-class.html">fabio.file_series.numbered_file_series</a></strong>:
- <em class="summary">mydata0001.edf = "mydata" + 0001 + ".edf"
- mydata0002.edf = "mydata" + 0002 + ".edf"
- mydata0003.edf = "mydata" + 0003 + ".edf"</em>
- </li>
- </ul>
- </li>
- </ul>
- </li>
- </ul>
- </li>
-</ul>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th bgcolor="#70b0f0" class="navbar-select"
- > Trees </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
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- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:26 2012
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- <td align="right" class="footer">
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- checkCookie();
- // -->
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diff --git a/doc/html/epydoc.js b/doc/html/epydoc.js
deleted file mode 100644
index e787dbc..0000000
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diff --git a/doc/html/fabio-module.html b/doc/html/fabio-module.html
deleted file mode 100644
index 08c0d59..0000000
--- a/doc/html/fabio-module.html
+++ /dev/null
@@ -1,197 +0,0 @@
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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
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- <th bgcolor="#70b0f0" class="navbar-select"
- > Home </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- Package fabio
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== PACKAGE DESCRIPTION ==================== -->
-<h1 class="epydoc">Package fabio</h1><p class="nomargin-top"><span class="codelink"><a href="fabio-pysrc.html">source code</a></span></p>
-<!-- ==================== SUBMODULES ==================== -->
-<a name="section-Submodules"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Submodules</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Submodules"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr><td class="summary">
- <ul class="nomargin">
- <li> <strong class="uidlink"><a href="fabio.GEimage-module.html">fabio.GEimage</a></strong> </li>
- <li> <strong class="uidlink"><a href="fabio.GEimage_old-module.html">fabio.GEimage_old</a></strong>: <em class="summary">Reads the header from a GE a-Si Angio Detector</em> </li>
- <li> <strong class="uidlink"><a href="fabio.HiPiCimage-module.html">fabio.HiPiCimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.OXDimage-module.html">fabio.OXDimage</a></strong>: <em class="summary">Reads Oxford Diffraction Sapphire 3 images</em> </li>
- <li> <strong class="uidlink"><a href="fabio.TiffIO-module.html">fabio.TiffIO</a></strong> </li>
- <li> <strong class="uidlink"><a href="fabio.adscimage-module.html">fabio.adscimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.binaryimage-module.html">fabio.binaryimage</a></strong>: <em class="summary">Authors: Gael Goret, Jerome Kieffer, ESRF, France Emails:
- gael.goret at esrf.fr, jerome.kieffer at esrf.fr</em> </li>
- <li> <strong class="uidlink"><a href="fabio.bruker100image-module.html">fabio.bruker100image</a></strong> </li>
- <li> <strong class="uidlink"><a href="fabio.brukerimage-module.html">fabio.brukerimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.byte_offset-module.html">fabio.byte_offset</a></strong>: <em class="summary">Authors: Jerome Kieffer, ESRF Email:
- jerome.kieffer at esrf.eu</em> </li>
- <li> <strong class="uidlink"><a href="fabio.cbfimage-module.html">fabio.cbfimage</a></strong>: <em class="summary">Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr</em> </li>
- <li> <strong class="uidlink"><a href="fabio.cf_io-module.html">fabio.cf_io</a></strong> </li>
- <li> <strong class="uidlink"><a href="fabio.compression-module.html">fabio.compression</a></strong>: <em class="summary">Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr</em> </li>
- <li> <strong class="uidlink"><a href="fabio.converters-module.html">fabio.converters</a></strong>: <em class="summary">Converter module.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.datIO-module.html">fabio.datIO</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.dm3image-module.html">fabio.dm3image</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.edfimage-module.html">fabio.edfimage</a></strong>: <em class="summary">License: GPLv2+</em> </li>
- <li> <strong class="uidlink"><a href="fabio.fabioimage-module.html">fabio.fabioimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.fabioutils-module.html">fabio.fabioutils</a></strong>: <em class="summary">General purpose utilities functions for fabio</em> </li>
- <li> <strong class="uidlink"><a href="fabio.file_series-module.html">fabio.file_series</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.fit2dmaskimage-module.html">fabio.fit2dmaskimage</a></strong>: <em class="summary">Author: Andy Hammersley, ESRF Translation into python/fabio: Jon
- Wright, ESRF</em> </li>
- <li> <strong class="uidlink"><a href="fabio.fit2dspreadsheetimage-module.html">fabio.fit2dspreadsheetimage</a></strong>: <em class="summary">Read the fit2d ascii image output...</em> </li>
- <li> <strong class="uidlink"><a href="fabio.kcdimage-module.html">fabio.kcdimage</a></strong>: <em class="summary">Authors: Jerome Kieffer, ESRF
- email:jerome.kieffer at esrf.fr</em> </li>
- <li> <strong class="uidlink"><a href="fabio.mar345_IO-module.html">fabio.mar345_IO</a></strong>: <em class="summary">New Cython version of mar345_io for preparing the migration to Python3</em> </li>
- <li> <strong class="uidlink"><a href="fabio.mar345image-module.html">fabio.mar345image</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.marccdimage-module.html">fabio.marccdimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.openimage-module.html">fabio.openimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.pilatusimage-module.html">fabio.pilatusimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.pnmimage-module.html">fabio.pnmimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.readbytestream-module.html">fabio.readbytestream</a></strong>: <em class="summary">Reads a bytestream</em> </li>
- <li> <strong class="uidlink"><a href="fabio.tifimage-module.html">fabio.tifimage</a></strong>: <em class="summary">FabIO class for dealing with TIFF images.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.xsdimage-module.html">fabio.xsdimage</a></strong>: <em class="summary">Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr</em> </li>
- </ul></td></tr>
-</table>
-
-<br />
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="version"></a><span class="summary-name">version</span> = <code title="'0.1.0'"><code class="variable-quote">'</code><code class="variable-string">0.1.0</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
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diff --git a/doc/html/fabio-pysrc.html b/doc/html/fabio-pysrc.html
deleted file mode 100644
index dd5061c..0000000
--- a/doc/html/fabio-pysrc.html
+++ /dev/null
@@ -1,123 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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- <title>fabio</title>
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- Package fabio
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- onclick="toggle_private();">hide private</a>]</span></td></tr>
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- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
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-</table>
-<h1 class="epydoc">Source Code for <a href="fabio-module.html">Package fabio</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.version=fabio-module.html#version"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-0', 'version', 'link-0');">version</a></tt> <tt class="py-op">=</tt> <tt class="py-docstring">"0.1.0"</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">basicConfig</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Module fabio.openimage=fabio.openimage-module.html,Function fabio.openimage.openimage()=fabio.openimage-module.html#openimage"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-2', 'openimage', 'link-2');">openimage</a></tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name" targets="Module fabio.fabioutils=fabio.fabioutils-module.html"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-3', 'fabioutils', 'link-3');">fabioutils</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Class fabio.fabioutils.filename_object=fabio.fabioutils.filename_object-class.html"><a [...]
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> <tt id="link-7" class="py-name" targets="Function fabio.fabioutils.previous_filename()=fabio.fabioutils-module.html#previous_filename"><a title="fabio.fabioutils.previous_filename" class="py-name" href="#" onclick="return doclink('link-7', 'previous_filename', 'link-7');">previous_filename</a></tt><tt class="py-op">,</tt> <tt id="link-8" class="py-name" targets="Function fabio.fabioutils.next_filename()=fabio.fab [...]
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"> <tt id="link-10" class="py-name" targets="Function fabio.fabioutils.extract_filenumber()=fabio.fabioutils-module.html#extract_filenumber"><a title="fabio.fabioutils.extract_filenumber" class="py-name" href="#" onclick="return doclink('link-10', 'extract_filenumber', 'link-10');">extract_filenumber</a></tt><tt class="py-op">,</tt> <tt id="link-11" class="py-name" targets="Function fabio.fabioutils.getnum()=fabio.f [...]
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-13" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-13', 'openimage', 'link-2');">openimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-14" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-14', 'openimage', 'link-2');">openimage</a></tt> <tt class="py-keyword">as</tt> <tt class="py-name">open</tt> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
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- // -->
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-</body>
-</html>
diff --git a/doc/html/fabio.GEimage-module.html b/doc/html/fabio.GEimage-module.html
deleted file mode 100644
index 593dca2..0000000
--- a/doc/html/fabio.GEimage-module.html
+++ /dev/null
@@ -1,255 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.GEimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
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- <a href="fabio-module.html">Package fabio</a> ::
- Module GEimage
- </span>
- </td>
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- onclick="toggle_private();">hide private</a>]</span></td></tr>
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- >] | <a href="fabio.GEimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module GEimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.GEimage-pysrc.html">source code</a></span></p>
-<!-- ==================== CLASSES ==================== -->
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.GEimage.GEimage-class.html" class="summary-name">GEimage</a>
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
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- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="demo"></a><span class="summary-sig-name">demo</span>()</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#demo">source code</a></span>
-
- </td>
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-
- </td>
- </tr>
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-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
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- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("GEimage")">logging.getLogger("GEimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.GEimage-module.html#GE_HEADER_INFO" class="summary-name">GE_HEADER_INFO</a> = <code title="[('ImageFormat', 10, None),
- ('VersionOfStandardHeader', 2, '=H'),
- ('StandardHeaderSizeInBytes', 4, '=L'),
- ('VersionOfUserHeader', 2, '=H'),
- ('UserHeaderSizeInBytes', 4, '=L'),
- ('NumberOfFrames', 2, '=H'),
- ('NumberOfRowsInFrame', 2, '=H'),
- ('NumberOfColsInFrame', 2, '=H'),
-..."><code class="variable-group">[</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">ImageFormat</code><code class="variable-quote">'</code><code class="variable-op">, </code>10<code class="variable-op">, </code>None<code class="variable-group">)</code><code class="variable-op">, </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">VersionOfStanda</code><code class="vari [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="GE_HEADER_INFO"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">GE_HEADER_INFO</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">[</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">ImageFormat</code><code class="variable-quote">'</code><code class="variable-op">, </code>10<code class="variable-op">, </code>None<code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">VersionOfStandardHeader</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">=H</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">StandardHeaderSizeInBytes</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">=L</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">VersionOfUserHeader</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">=H</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">UserHeaderSizeInBytes</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">=L</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">NumberOfFrames</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">=H</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">NumberOfRowsInFrame</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">=H</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">NumberOfColsInFrame</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">=H</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
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diff --git a/doc/html/fabio.GEimage-pysrc.html b/doc/html/fabio.GEimage-pysrc.html
deleted file mode 100644
index 87f5752..0000000
--- a/doc/html/fabio.GEimage-pysrc.html
+++ /dev/null
@@ -1,638 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.GEimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
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- <a href="fabio-module.html">Package fabio</a> ::
- Module GEimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.GEimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
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-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.GEimage-module.html">Module fabio.GEimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt>
</tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line">
</tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment">#</tt>
</tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"># Reads the header from a GE a-Si Angio Detector</tt>
</tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"># Using version 8001 of the header from file:</tt>
</tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-comment"># c:\adept\core\DefaultImageInfoConfig.csv</tt>
</tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-comment">#</tt>
</tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-comment"># Antonino Miceli</tt>
</tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-comment"># Thu Jan 4 13:46:31 CST 2007</tt>
</tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-comment">#</tt>
</tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line">
</tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-comment"># modifications by Jon Wright for style, pychecker and fabio</tt>
</tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-comment"># </tt>
</tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line">
</tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">struct</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"GEimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name" targets="Module fabio.fabioutils=fabio.fabioutils-module.html"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-3', 'fabioutils', 'link-3');">fabioutils</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Function fabio.fabioutils.next_filename()=fabio.fabioutils-module.html#next_filename" [...]
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line">
</tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt id="link-6" class="py-name" targets="Variable fabio.GEimage.GE_HEADER_INFO=fabio.GEimage-module.html#GE_HEADER_INFO"><a title="fabio.GEimage.GE_HEADER_INFO" class="py-name" href="#" onclick="return doclink('link-6', 'GE_HEADER_INFO', 'link-6');">GE_HEADER_INFO</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt>
</tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-comment"># Name, length in bytes, format for struct (None means string)</tt>
</tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ImageFormat'</tt><tt class="py-op">,</tt> <tt class="py-number">10</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'VersionOfStandardHeader'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'StandardHeaderSizeInBytes'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'VersionOfUserHeader'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'UserHeaderSizeInBytes'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'NumberOfFrames'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'NumberOfRowsInFrame'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'NumberOfColsInFrame'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ImageDepthInBits'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'AcquisitionDate'</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'AcquisitionTime'</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'DUTID'</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'Operator'</tt><tt class="py-op">,</tt> <tt class="py-number">50</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'DetectorSignature'</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TestSystemName'</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TestStationRevision'</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'CoreBundleRevision'</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'AcquisitionName'</tt><tt class="py-op">,</tt> <tt class="py-number">40</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'AcquisitionParameterRevision'</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'OriginalNumberOfRows'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'OriginalNumberOfColumns'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'RowNumberUpperLeftPointArchiveROI'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ColNumberUpperLeftPointArchiveROI'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'Swapped'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'Reordered'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'HorizontalFlipped'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'VerticalFlipped'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'WindowValueDesired'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'LevelValueDesired'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'AcquisitionMode'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'AcquisitionType'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'UserAcquisitionCoffFileName1'</tt><tt class="py-op">,</tt> <tt class="py-number">100</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
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</tt>
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</tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FramesDuringExpose'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FramesAfterExpose'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'IntervalBetweenFrames'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ExposeTimeDelayInMicrosecs'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TimeBetweenFramesInMicrosecs'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FramesToSkipExpose'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ExposureMode'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'PrepPresetTimeInMicrosecs'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ExposePresetTimeInMicrosecs'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'AcquisitionFrameRateInFps'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=f'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FOVSelect'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ExpertMode'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'SetVCommon1'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'SetVCommon2'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'SetAREF'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'SetAREFTrim'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'SetSpareVoltageSource'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'SetCompensationVoltageSource'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'SetRowOffVoltage'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'SetRowOnVoltage'</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-string">'=d'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'StoreCompensationVoltage'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'RampSelection'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TimingMode'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'Bandwidth'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ARCIntegrator'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ARCPostIntegrator'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'NumberOfRows'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'RowEnable'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'EnableStretch'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'CompEnable'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'CompStretch'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'LeftEvenTristate'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'RightOddTristate'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TestModeSelect'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'AnalogTestSource'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'VCommonSelect'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'DRCColumnSum'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TestPatternFrameDelta'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TestPatternRowDelta'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TestPatternColumnDelta'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'DetectorHorizontalFlip'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'DetectorVerticalFlip'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'DFNAutoScrubOnOff'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FiberChannelTimeOutInMicrosecs'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'DFNAutoScrubDelayInMicrosecs'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'StoreAECROI'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TestPatternSaturationValue'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'TestPatternSeed'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=L'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'ExposureTimeInMillisecs'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=f'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FrameRateInFps'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=f'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'kVp'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-string">'=f'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
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</tt>
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-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'RowBinning'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'BorderColumns64'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'BorderRows64'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FETOffRows64'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FOVStartColumn128'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'FOVStartRow128'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'NumberOfColumns128'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'NumberOfRows128'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">'=H'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'VFPAquisition'</tt><tt class="py-op">,</tt> <tt class="py-number">2000</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">,</tt>
</tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'Comment'</tt><tt class="py-op">,</tt> <tt class="py-number">200</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt>
</tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line">
</tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line">
</tt>
-<a name="GEimage"></a><div id="GEimage-def"><a name="L181"></a><tt class="py-lineno">181</tt> <a class="py-toggle" href="#" id="GEimage-toggle" onclick="return toggle('GEimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html">GEimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="GEimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="GEimage-expanded"><a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line">
</tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt id="link-7" class="py-name" targets="Variable fabio.GEimage.GEimage._need_a_seek_to_read=fabio.GEimage.GEimage-class.html#_need_a_seek_to_read,Variable fabio.fabioimage.fabioimage._need_a_seek_to_read=fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read,Variable fabio.tifimage.tifimage._need_a_seek_to_read=fabio.tifimage.tifimage-class.html#_need_a_seek_to_read"><a title="fabio.GEimage.GEimage._need_a_s [...]
-fabio.fabioimage.fabioimage._need_a_seek_to_read
-fabio.tifimage.tifimage._need_a_seek_to_read" class="py-name" href="#" onclick="return doclink('link-7', '_need_a_seek_to_read', 'link-7');">_need_a_seek_to_read</a></tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line">
</tt>
-<a name="GEimage._readheader"></a><div id="GEimage._readheader-def"><a name="L185"></a><tt class="py-lineno">185</tt> <a class="py-toggle" href="#" id="GEimage._readheader-toggle" onclick="return toggle('GEimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">infile</tt><t [...]
-</div><div id="GEimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage._readheader-expanded"><a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-docstring">""" Read a GE image header """</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line">
</tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line">
</tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-8', 'header', 'link-8');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">name</tt><tt class="py-op">,</tt> <tt class="py-name">nbytes</tt><tt class="py-op">,</tt> <tt class="py-name">format</tt> <tt class="py-keyword">in</tt> <tt id="link-9" class="py-name"><a title="fabio.GEimage.GE_HEADER_INFO" class="py-name" href="#" onclick="return doclink('link-9', 'GE_HEADER_INFO', 'link-6');">GE_HEADER_INFO</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">format</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-10', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt> <tt class="py-name">name</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-11" cla [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-11', 'read', 'link-11');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">nbytes</tt><tt class="py-op">)</tt> </tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-12', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt> <tt class="py-name">name</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-13" cla [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-13', 'unpack', 'link-13');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">format</tt><tt class="py-op">,</tt>
</tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-14', 'read', 'link-11');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">nbytes</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line">
</tt>
-<a name="GEimage.read"></a><div id="GEimage.read-def"><a name="L198"></a><tt class="py-lineno">198</tt> <a class="py-toggle" href="#" id="GEimage.read-toggle" onclick="return toggle('GEimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py-param" [...]
-</div><div id="GEimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage.read-expanded"><a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and
</tt> </tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data
</tt> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">frame</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-name">frame</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-15', 'header', 'link-8');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-16', 'resetvals', 'link-16');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-17', '_open', 'link-17');">_open</a></tt><tt class="py-op">(</tt><tt cla [...]
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">sequencefilename</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._re [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-18', '_readheader', 'link-18');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name" targets="Variable fabio.edfimage.edfimage.nframes=fabio.edfimage.edfimage-class.html#nframes"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-19', 'nframes', 'link-19');">nframes</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="lin [...]
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name" targets="Method fabio.GEimage.GEimage._readframe()=fabio.GEimage.GEimage-class.html#_readframe"><a title="fabio.GEimage.GEimage._readframe" class="py-name" href="#" onclick="return doclink('link-21', '_readframe', 'link-21');">_readframe</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">,</tt> < [...]
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line">
</tt>
-<a name="GEimage._makeframename"></a><div id="GEimage._makeframename-def"><a name="L215"></a><tt class="py-lineno">215</tt> <a class="py-toggle" href="#" id="GEimage._makeframename-toggle" onclick="return toggle('GEimage._makeframename');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html#_makeframename">_makeframename</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op" [...]
-</div><div id="GEimage._makeframename-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage._makeframename-expanded"><a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-docstring">""" The thing to be printed for the user to represent a frame inside
</tt> </tt>
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"><tt class="py-docstring"> a file """</tt> </tt>
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s$%04d"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">sequencefilename</tt><tt class="py-op">,</tt>
</tt>
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line">
</tt>
-<a name="GEimage._readframe"></a><div id="GEimage._readframe-def"><a name="L221"></a><tt class="py-lineno">221</tt> <a class="py-toggle" href="#" id="GEimage._readframe-toggle" onclick="return toggle('GEimage._readframe');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html#_readframe">_readframe</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">filepointer</tt><tt [...]
-</div><div id="GEimage._readframe-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage._readframe-expanded"><a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"><tt class="py-docstring"> # Load only one image from the sequence
</tt> </tt>
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"><tt class="py-docstring"> # Note: the first image in the sequence 0
</tt> </tt>
-<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"><tt class="py-docstring"> # raises an exception if you give an invalid image
</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"><tt class="py-docstring"> # otherwise fills in self.data
</tt> </tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt><tt class="py-name">img_num</tt> <tt class="py-op">></tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-22', 'nframes', 'link-19');">nframes</a></tt> <tt class="py-keyword">or</tt> <tt class="py-name">img_num</tt> <tt [...]
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Bad image number"</tt><tt class="py-op">)</tt> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-name">imgstart</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-23', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'StandardHeaderSizeInBytes'</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> \
</tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-24', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'UserHeaderSizeInBytes'</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> \
</tt>
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-name">img_num</tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-25', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NumberOfRowsInFrame'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> \
</tt>
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-26', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NumberOfColsInFrame'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> \
</tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-27', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'ImageDepthInBits'</tt><tt class="py-op">]</tt> <tt class="py-op">/</tt> <tt class="py-number">8</tt> </tt>
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-comment"># whence = 0 means seek from start of file</tt>
</tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-name">filepointer</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">imgstart</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line">
</tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-28', 'bpp', 'link-28');">bpp</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name [...]
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-name">imglength</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-30', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NumberOfRowsInFrame'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> \
</tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-31', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NumberOfColsInFrame'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt>< [...]
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-33', 'bpp', 'link-28');">bpp</a></tt> <tt class="py-op">!=</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Using uint16 for GE but seems to be wrong"</tt><tt class="py-op">)</tt> </tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line">
</tt>
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-comment"># Guessing it is always unsigned int?</tt>
</tt>
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-34', 'data', 'link-34');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">filepointer</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-35', 'read', 'link-11');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">imglength</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-36', 'data', 'link-34');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-37', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-s [...]
</tt>
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-38', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NumberOfColsInFrame'</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-39', 'dim2', 'link-39');">dim2</a></tt> <tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-40" class="py [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-41', 'data', 'link-34');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">img_num</tt><tt class="py-op">)</tt> </tt>
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Method fabio.GEimage.GEimage._makeframename()=fabio.GEimage.GEimage-class.html#_makeframename"><a title="fabio.GEimage.GEimage._makeframename" class="py-name" href="#" onclick="return doclink('link-42', '_makeframename', 'link-42');">_makeframename</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line">
</tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line">
</tt>
-<a name="GEimage.write"></a><div id="GEimage.write-def"><a name="L253"></a><tt class="py-lineno">253</tt> <a class="py-toggle" href="#" id="GEimage.write-toggle" onclick="return toggle('GEimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py- [...]
-</div><div id="GEimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage.write-expanded"><a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-docstring">""" Not yet implemented"""</tt> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Write is not implemented"</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line">
</tt>
-<a name="GEimage.getframe"></a><div id="GEimage.getframe-def"><a name="L257"></a><tt class="py-lineno">257</tt> <a class="py-toggle" href="#" id="GEimage.getframe-toggle" onclick="return toggle('GEimage.getframe');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html#getframe">getframe</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">num</tt><tt class="py-op">)</tt [...]
-</div><div id="GEimage.getframe-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage.getframe-expanded"><a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"><tt class="py-docstring"> Returns a frame as a new fabioimage object
</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">num</tt> <tt class="py-op"><</tt> <tt class="py-number">0</tt> <tt class="py-keyword">or</tt> <tt class="py-name">num</tt> <tt class="py-op">></tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-43', 'nframes', 'link-19 [...]
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Requested frame number is out of range"</tt><tt class="py-op">)</tt> </tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-comment"># Do a deep copy of the header to make a new one</tt>
</tt>
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-name">newheader</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">k</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-44', 'header', 'link-8');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</ [...]
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-name">newheader</tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-45', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">k</tt> [...]
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">frame</tt> <tt class="py-op">=</tt> <tt id="link-46" class="py-name" targets="Module fabio.GEimage=fabio.GEimage-module.html,Class fabio.GEimage.GEimage=fabio.GEimage.GEimage-class.html,Class fabio.GEimage_old.GEimage=fabio.GEimage_old.GEimage-class.html"><a title="fabio.GEimage
-fabio.GEimage.GEimage
-fabio.GEimage_old.GEimage" class="py-name" href="#" onclick="return doclink('link-46', 'GEimage', 'link-46');">GEimage</a></tt><tt class="py-op">(</tt><tt id="link-47" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-47', 'header', 'link-8');">header</a></tt><tt class="py-op">=</tt><tt class="py-name">newheader</tt><tt class="py-op">)</tt> </tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-name">frame</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-48', 'nframes', 'link-19');">nframes</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onc [...]
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-name">frame</tt><tt class="py-op">.</tt><tt class="py-name">sequencefilename</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">sequencefilename</tt> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">frame</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-50', '_open', 'link-17');">_open</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">sequencefilename</tt><tt class= [...]
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-name">frame</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="fabio.GEimage.GEimage._readframe" class="py-name" href="#" onclick="return doclink('link-51', '_readframe', 'link-21');">_readframe</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">,</tt> <tt class="py-name">num</tt><tt class="py-op">)</tt> </tt>
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">frame</tt> </tt>
-</div><a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line">
</tt>
-<a name="GEimage.next"></a><div id="GEimage.next-def"><a name="L275"></a><tt class="py-lineno">275</tt> <a class="py-toggle" href="#" id="GEimage.next-toggle" onclick="return toggle('GEimage.next');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html#next">next</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="GEimage.next-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage.next-expanded"><a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"><tt class="py-docstring"> Get the next image in a series as a fabio image
</tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-52', 'nframes', 'link-19');">nframes</a></tt> <tt class [...]
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name" targets="Method fabio.GEimage.GEimage.getframe()=fabio.GEimage.GEimage-class.html#getframe,Method fabio.edfimage.edfimage.getframe()=fabio.edfimage.edfimage-class.html#getframe,Method fabio.fabioimage.fabioimage.getframe()=fabio.fabioimage.fabioimage-class.html#getframe"><a title="fabio. [...]
-fabio.edfimage.edfimage.getframe
-fabio.fabioimage.fabioimage.getframe" class="py-name" href="#" onclick="return doclink('link-54', 'getframe', 'link-54');">getframe</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-name">newobj</tt> <tt class="py-op">=</tt> <tt id="link-55" class="py-name"><a title="fabio.GEimage
-fabio.GEimage.GEimage
-fabio.GEimage_old.GEimage" class="py-name" href="#" onclick="return doclink('link-55', 'GEimage', 'link-46');">GEimage</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-name">newobj</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-56', 'read', 'link-11');">read</a></tt><tt class="py-op">(</tt><tt id="link-57" class="py-name"><a title="fabio.fabioutils.next_filename" class="py-name" href="#" onclick="return doclink('link-57', 'next_filename', 'link-4');">next_filename</a></tt><tt class="py-op">(</tt>
</tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">sequencefilename</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">newobj</tt> </tt>
-</div><a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line">
</tt>
-<a name="GEimage.previous"></a><div id="GEimage.previous-def"><a name="L287"></a><tt class="py-lineno">287</tt> <a class="py-toggle" href="#" id="GEimage.previous-toggle" onclick="return toggle('GEimage.previous');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage.GEimage-class.html#previous">previous</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="GEimage.previous-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage.previous-expanded"><a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"><tt class="py-docstring"> Get the previous image in a series as a fabio image
</tt> </tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="fabio.GEimage.GEimage.getframe
-fabio.edfimage.edfimage.getframe
-fabio.fabioimage.fabioimage.getframe" class="py-name" href="#" onclick="return doclink('link-58', 'getframe', 'link-54');">getframe</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-name">newobj</tt> <tt class="py-op">=</tt> <tt id="link-59" class="py-name"><a title="fabio.GEimage
-fabio.GEimage.GEimage
-fabio.GEimage_old.GEimage" class="py-name" href="#" onclick="return doclink('link-59', 'GEimage', 'link-46');">GEimage</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt class="py-name">newobj</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-60', 'read', 'link-11');">read</a></tt><tt class="py-op">(</tt><tt id="link-61" class="py-name"><a title="fabio.fabioutils.previous_filename" class="py-name" href="#" onclick="return doclink('link-61', 'previous_filename', 'link-5');">previous_filename</a></tt><tt class="py-op">(</tt>
</tt>
-<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">sequencefilename</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">newobj</tt> </tt>
-</div></div><a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line">
</tt>
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line">
</tt>
-<a name="demo"></a><div id="demo-def"><a name="L300"></a><tt class="py-lineno">300</tt> <a class="py-toggle" href="#" id="demo-toggle" onclick="return toggle('demo');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage-module.html#demo">demo</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="demo-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="demo-expanded"><a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">sys</tt><tt class="py-op">,</tt> <tt class="py-name">time</tt> </tt>
-<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line">
</tt>
-<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-62" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-62', 'len', 'link-62');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py [...]
-<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"USAGE: GE_script.py <GEaSi_raw_image_file>"</tt> </tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">exit</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line">
</tt>
-<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt class="py-name">image_file</tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line">
</tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"init read_GEaSi_data class and load header.."</tt> </tt>
-<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt class="py-name">sequence1</tt> <tt class="py-op">=</tt> <tt id="link-63" class="py-name"><a title="fabio.GEimage
-fabio.GEimage.GEimage
-fabio.GEimage_old.GEimage" class="py-name" href="#" onclick="return doclink('link-63', 'GEimage', 'link-46');">GEimage</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> <tt class="py-name">sequence1</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-64', 'read', 'link-11');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">image_file</tt><tt class="py-op">)</tt> </tt>
-<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line">
</tt>
-<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"TimeBetweenFramesInMicrosecs = "</tt><tt class="py-op">,</tt> </tt>
-<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">sequence1</tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-65', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'TimeBetweenFramesInMicrosecs'</tt><tt class="py-op">]</tt> </tt>
-<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"AcquisitionTime = "</tt><tt class="py-op">,</tt> </tt>
-<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">sequence1</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-66', 'header', 'link-8');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'AcquisitionTime'</tt><tt class="py-op">]</tt> </tt>
-<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line">
</tt>
-<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line">
</tt>
-<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"Mean = "</tt><tt class="py-op">,</tt> <tt class="py-name">sequence1</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-67', 'data', 'link-34');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">ravel</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">mean</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line">
</tt>
-<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">time</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt class="py-name">sequence1</tt> <tt class="py-op">=</tt> <tt class="py-name">sequence1</tt><tt class="py-op">.</tt><tt id="link-68" class="py-name" targets="Method fabio.GEimage.GEimage.next()=fabio.GEimage.GEimage-class.html#next,Method fabio.edfimage.edfimage.next()=fabio.edfimage.edfimage-class.html#next,Method fabio.fabioimage.fabioimage.next()=fabio.fabioimage.fabioimage-class.html#next,Method fabi [...]
-fabio.edfimage.edfimage.next
-fabio.fabioimage.fabioimage.next
-fabio.file_series.file_series.next
-fabio.file_series.filename_series.next" class="py-name" href="#" onclick="return doclink('link-68', 'next', 'link-68');">next</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">sequence1</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">,</tt> <tt class="py-name">sequence1</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-69', 'data', 'link-34');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">ravel</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">mean</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> \
</tt>
-<a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">time</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-name">start</tt> </tt>
-<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">ex</tt><tt class="py-op">:</tt> </tt>
-<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ex</tt> </tt>
-</div><a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line">
</tt>
-<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line">
</tt>
-<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line">
</tt>
-<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line">
</tt>
-<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">'__main__'</tt><tt class="py-op">:</tt> </tt>
-<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> <tt id="link-70" class="py-name" targets="Function fabio.GEimage.demo()=fabio.GEimage-module.html#demo"><a title="fabio.GEimage.demo" class="py-name" href="#" onclick="return doclink('link-70', 'demo', 'link-70');">demo</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- // -->
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-</html>
diff --git a/doc/html/fabio.GEimage.GEimage-class.html b/doc/html/fabio.GEimage.GEimage-class.html
deleted file mode 100644
index 8c646e3..0000000
--- a/doc/html/fabio.GEimage.GEimage-class.html
+++ /dev/null
@@ -1,565 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.GEimage.GEimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- href="fabio-module.html">Home</a> </th>
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.GEimage-module.html">Module GEimage</a> ::
- Class GEimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.GEimage.GEimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class GEimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">GEimage</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.GEimage.GEimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Read a GE image header</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.GEimage.GEimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and the data into self.data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_makeframename"></a><span class="summary-sig-name">_makeframename</span>(<span class="summary-sig-arg">self</span>)</span><br />
- The thing to be printed for the user to represent a frame inside a
- file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage._makeframename">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_readframe"></a><span class="summary-sig-name">_readframe</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filepointer</span>,
- <span class="summary-sig-arg">img_num</span>)</span><br />
- # Load only one image from the sequence # Note: the first image in
- the sequence 0 # raises an exception if you give an invalid image #
- otherwise fills in self.data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage._readframe">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.GEimage.GEimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">force_type</span>=<span class="summary-sig-default"><type 'numpy.uint16'></span>)</span><br />
- Not yet implemented</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.GEimage.GEimage-class.html#getframe" class="summary-sig-name">getframe</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- Returns a frame as a new fabioimage object</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.getframe">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.GEimage.GEimage-class.html#next" class="summary-sig-name">next</a>(<span class="summary-sig-arg">self</span>)</span><br />
- Get the next image in a series as a fabio image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.next">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.GEimage.GEimage-class.html#previous" class="summary-sig-name">previous</a>(<span class="summary-sig-arg">self</span>)</span><br />
- Get the previous image in a series as a fabio image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.previous">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="_need_a_seek_to_read"></a><span class="summary-name">_need_a_seek_to_read</span> = <code title="True">True</code>
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read a GE image header</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in header into self.header and the data into self.data</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">force_type</span>=<span class="sig-default"><type 'numpy.uint16'></span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>Not yet implemented</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="getframe"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">getframe</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">num</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.getframe">source code</a></span>
- </td>
- </tr></table>
-
- <p>Returns a frame as a new fabioimage object</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#getframe">fabioimage.fabioimage.getframe</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="next"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">next</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.next">source code</a></span>
- </td>
- </tr></table>
-
- <p>Get the next image in a series as a fabio image</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#next">fabioimage.fabioimage.next</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="previous"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">previous</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.GEimage-pysrc.html#GEimage.previous">source code</a></span>
- </td>
- </tr></table>
-
- <p>Get the previous image in a series as a fabio image</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#previous">fabioimage.fabioimage.previous</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
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- <!--
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.GEimage_old-module.html b/doc/html/fabio.GEimage_old-module.html
deleted file mode 100644
index 1c94b6a..0000000
--- a/doc/html/fabio.GEimage_old-module.html
+++ /dev/null
@@ -1,174 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.GEimage_old</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
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- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
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- <a href="fabio-module.html">Package fabio</a> ::
- Module GEimage_old
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-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module GEimage_old</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.GEimage_old-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Reads the header from a GE a-Si Angio Detector
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
- + Jon Wright, ESRF
-
- The header information has been taken from the script read_GEaSi_data.py
- by
- Antonino Miceli
- Thu Jan 4 13:46:31 CST 2007
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
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- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
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diff --git a/doc/html/fabio.GEimage_old-pysrc.html b/doc/html/fabio.GEimage_old-pysrc.html
deleted file mode 100644
index 11b3379..0000000
--- a/doc/html/fabio.GEimage_old-pysrc.html
+++ /dev/null
@@ -1,1055 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
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- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module GEimage_old
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.GEimage_old-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.GEimage_old-module.html">Module fabio.GEimage_old</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line">
</tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt>
</tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line">
</tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">"""
</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">Reads the header from a GE a-Si Angio Detector
</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">
</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen
</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions
</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory
</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399
</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde
</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk
</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring">
</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring"> + Jon Wright, ESRF
</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-docstring">
</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-docstring"> The header information has been taken from the script read_GEaSi_data.py
</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-docstring"> by
</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-docstring"> Antonino Miceli
</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-docstring"> Thu Jan 4 13:46:31 CST 2007
</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-docstring">
</tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line">
</tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-0', 'fabioimage', 'link-0');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-0');">fabioimage</a></tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line">
</tt>
-<a name="GEimage"></a><div id="GEimage-def"><a name="L26"></a><tt class="py-lineno"> 26</tt> <a class="py-toggle" href="#" id="GEimage-toggle" onclick="return toggle('GEimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.GEimage_old.GEimage-class.html">GEimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="GEimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="GEimage-expanded"><a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line">
</tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line">
</tt>
-<a name="GEimage._readheader"></a><div id="GEimage._readheader-def"><a name="L29"></a><tt class="py-lineno"> 29</tt> <a class="py-toggle" href="#" id="GEimage._readheader-toggle" onclick="return toggle('GEimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage_old.GEimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">infile</tt [...]
-</div><div id="GEimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage._readheader-expanded"><a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line">
</tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line">
</tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-comment"># ADEPT</tt>
</tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">ImageFormat</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-2" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-2', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">10</tt><tt class="py-op">)</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line">
</tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-comment"># USHORT --> "=H"</tt>
</tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-comment"># ULONG --> "=L"</tt>
</tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-comment"># = means byte order is native</tt>
</tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line">
</tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-3', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'HeaderVersion'</tt><tt class="py-op">]</tt> <tt clas [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-4', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-5', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'HeaderSizeInBytes'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name" [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-6', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-7', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'UserHeaderVersion'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-nam [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-8', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-9', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'UserHeaderSizeInBytes'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-n [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-10', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line">
</tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-11', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NumberOfFrames'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-12', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-13', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NumberOfRowsInFrame'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-14', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-15', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NumberOfColsInFrame'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-16', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-17', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'BitsPerPixel'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name"> [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-18', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line">
</tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-19', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'AcquisitionDate'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-20" [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-20', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">)</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-21', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'AcquisitionTime'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-22" [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-22', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">)</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line">
</tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">DUTID</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-23', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">)</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line">
</tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-24', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Operator'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-25" class= [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-25', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">50</tt><tt class="py-op">)</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line">
</tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-26', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'DetectorSignature'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-2 [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-27', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">)</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-28', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'TestSystemName'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-29" [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-29', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">)</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-30', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'TestStationRevision'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-31', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">)</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-32', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'CoreBundleRevision'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link- [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-33', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">)</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-34', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'AcquisitionName'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-35" [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-35', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">40</tt><tt class="py-op">)</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-36', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'AcquisitionParameterRevision'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-37', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">20</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line">
</tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"><tt class="py-comment"># self.OriginalNumberOfRows = infile.read(2)</tt>
</tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"><tt class="py-comment"># self.OriginalNumberOfRows = struct.unpack("=H",self.OriginalNumberOfRows)[0]</tt>
</tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line">
</tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"><tt class="py-comment"># self.OriginalNumberOfColumns = infile.read(2)</tt>
</tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"><tt class="py-comment"># self.OriginalNumberOfColumns = struct.unpack("=H",self.OriginalNumberOfColumns)[0]</tt>
</tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line">
</tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"><tt class="py-comment"># self.RowNumberUpperLeftPointArchiveROI = infile.read(2)</tt>
</tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"><tt class="py-comment"># self.RowNumberUpperLeftPointArchiveROI = struct.unpack("=H",self.RowNumberUpperLeftPointArchiveROI)[0]</tt>
</tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line">
</tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"><tt class="py-comment"># self.ColNumberUpperLeftPointArchiveROI = infile.read(2)</tt>
</tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"><tt class="py-comment"># self.ColNumberUpperLeftPointArchiveROI = struct.unpack("=H",self.ColNumberUpperLeftPointArchiveROI)[0]</tt>
</tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line">
</tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt class="py-comment"># self.Swapped = infile.read(2) </tt>
</tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt class="py-comment"># self.Swapped = struct.unpack("=H",self.Swapped)[0]</tt>
</tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line">
</tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt class="py-comment"># self.Reordered = infile.read(2) </tt>
</tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"><tt class="py-comment"># self.Reordered = struct.unpack("=H",self.Reordered)[0]</tt>
</tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line">
</tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"><tt class="py-comment"># self.HorizontalFlipped = infile.read(2) </tt>
</tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"><tt class="py-comment"># self.HorizontalFlipped = struct.unpack("=H",self.HorizontalFlipped)[0]</tt>
</tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line">
</tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"><tt class="py-comment"># self.VerticalFlipped = infile.read(2) </tt>
</tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt class="py-comment"># self.VerticalFlipped = struct.unpack("=H",self.VerticalFlipped)[0]</tt>
</tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line">
</tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"><tt class="py-comment"># self.WindowValueDesired = infile.read(2) </tt>
</tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"><tt class="py-comment"># self.WindowValueDesired = struct.unpack("=H",self.WindowValueDesired)[0]</tt>
</tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line">
</tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"><tt class="py-comment"># self.LevelValueDesired = infile.read(2) </tt>
</tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"><tt class="py-comment"># self.LevelValueDesired = struct.unpack("=H",self.LevelValueDesired)[0]</tt>
</tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line">
</tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"><tt class="py-comment"># self.AcquisitionMode = infile.read(2) </tt>
</tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt class="py-comment"># self.AcquisitionMode = struct.unpack("=H",self.AcquisitionMode)[0]</tt>
</tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line">
</tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"><tt class="py-comment"># self.AcquisitionType = infile.read(2) </tt>
</tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"><tt class="py-comment"># self.AcquisitionType = struct.unpack("=H",self.AcquisitionType)[0]</tt>
</tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line">
</tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"><tt class="py-comment"># self.UserAcquisitionCoffFileName1 = infile.read(100) </tt>
</tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"><tt class="py-comment"># self.UserAcquisitionCoffFileName2 = infile.read(100) </tt>
</tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line">
</tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"><tt class="py-comment"># self.FramesBeforeExpose = infile.read(2) </tt>
</tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"><tt class="py-comment"># self.FramesBeforeExpose = struct.unpack("=H",self.FramesBeforeExpose)[0]</tt>
</tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line">
</tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"><tt class="py-comment"># self.FramesDuringExpose = infile.read(2) </tt>
</tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"><tt class="py-comment"># self.FramesDuringExpose = struct.unpack("=H",self.FramesDuringExpose)[0]</tt>
</tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line">
</tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"><tt class="py-comment"># self.FramesAfterExpose = infile.read(2) </tt>
</tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"><tt class="py-comment"># self.FramesAfterExpose = struct.unpack("=H",self.FramesAfterExpose)[0]</tt>
</tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line">
</tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"><tt class="py-comment"># self.IntervalBetweenFrames = infile.read(2) </tt>
</tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"><tt class="py-comment"># self.IntervalBetweenFrames = struct.unpack("=H",self.IntervalBetweenFrames)[0]</tt>
</tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line">
</tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"><tt class="py-comment"># self.ExposeTimeDelayInMicrosecs = infile.read(8) </tt>
</tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"><tt class="py-comment"># self.ExposeTimeDelayInMicrosecs = struct.unpack("=d",self.ExposeTimeDelayInMicrosecs)[0]</tt>
</tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line">
</tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"><tt class="py-comment"># self.TimeBetweenFramesInMicrosecs = infile.read(8) </tt>
</tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt class="py-comment"># self.TimeBetweenFramesInMicrosecs = struct.unpack("=d",self.TimeBetweenFramesInMicrosecs)[0]</tt>
</tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line">
</tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"><tt class="py-comment"># self.FramesToSkipExpose = infile.read(2) </tt>
</tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"><tt class="py-comment"># self.FramesToSkipExpose = struct.unpack("=H",self.FramesToSkipExpose)[0]</tt>
</tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line">
</tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"><tt class="py-comment"># # Rad --> ExposureMode = 1</tt>
</tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"><tt class="py-comment"># self.ExposureMode = infile.read(2) </tt>
</tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"><tt class="py-comment"># self.ExposureMode = struct.unpack("=H",self.ExposureMode)[0]</tt>
</tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line">
</tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"><tt class="py-comment"># self.PrepPresetTimeInMicrosecs = infile.read(8) </tt>
</tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"><tt class="py-comment"># self.PrepPresetTimeInMicrosecs = struct.unpack("=d",self.PrepPresetTimeInMicrosecs)[0]</tt>
</tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line">
</tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"><tt class="py-comment"># self.ExposePresetTimeInMicrosecs = infile.read(8) </tt>
</tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"><tt class="py-comment"># self.ExposePresetTimeInMicrosecs = struct.unpack("=d",self.ExposePresetTimeInMicrosecs)[0]</tt>
</tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line">
</tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"><tt class="py-comment"># self.AcquisitionFrameRateInFps = infile.read(4) </tt>
</tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"><tt class="py-comment"># self.AcquisitionFrameRateInFps = struct.unpack("=f",self.AcquisitionFrameRateInFps)[0]</tt>
</tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line">
</tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"><tt class="py-comment"># self.FOVSelect = infile.read(2)</tt>
</tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"><tt class="py-comment"># self.FOVSelect = struct.unpack("=H",self.FOVSelect)[0]</tt>
</tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line">
</tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"><tt class="py-comment"># self.ExpertMode = infile.read(2)</tt>
</tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"><tt class="py-comment"># self.ExpertMode = struct.unpack("=H",self.ExpertMode)[0]</tt>
</tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line">
</tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"><tt class="py-comment"># self.SetVCommon1 = infile.read(8)</tt>
</tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"><tt class="py-comment"># self.SetVCommon1 = struct.unpack("=d",self.SetVCommon1)[0]</tt>
</tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line">
</tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"><tt class="py-comment"># self.SetVCommon2 = infile.read(8)</tt>
</tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"><tt class="py-comment"># self.SetVCommon2 = struct.unpack("=d",self.SetVCommon2)[0]</tt>
</tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line">
</tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"><tt class="py-comment"># self.SetAREF = infile.read(8)</tt>
</tt>
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"><tt class="py-comment"># self.SetAREF = struct.unpack("=d",self.SetAREF)[0]</tt>
</tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line">
</tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"><tt class="py-comment"># self.SetAREFTrim = infile.read(4)</tt>
</tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"><tt class="py-comment"># self.SetAREFTrim = struct.unpack("=L",self.SetAREFTrim)[0]</tt>
</tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line">
</tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"><tt class="py-comment"># self.SetSpareVoltageSource = infile.read(8)</tt>
</tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"><tt class="py-comment"># self.SetSpareVoltageSource = struct.unpack("=d",self.SetSpareVoltageSource)[0]</tt>
</tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line">
</tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"><tt class="py-comment"># self.SetCompensationVoltageSource = infile.read(8)</tt>
</tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"><tt class="py-comment"># self.SetCompensationVoltageSource = struct.unpack("=d",self.SetCompensationVoltageSource)[0]</tt>
</tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line">
</tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"><tt class="py-comment"># self.SetRowOffVoltage = infile.read(8)</tt>
</tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"><tt class="py-comment"># self.SetRowOffVoltage = struct.unpack("=d",self.SetRowOffVoltage)[0]</tt>
</tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line">
</tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"><tt class="py-comment"># self.SetRowOnVoltage = infile.read(8)</tt>
</tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"><tt class="py-comment"># self.SetRowOnVoltage = struct.unpack("=d",self.SetRowOnVoltage)[0]</tt>
</tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line">
</tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"><tt class="py-comment"># self.StoreCompensationVoltage = infile.read(4)</tt>
</tt>
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"><tt class="py-comment"># self.StoreCompensationVoltage = struct.unpack("=L",self.StoreCompensationVoltage)[0]</tt>
</tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line">
</tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"><tt class="py-comment"># self.RampSelection = infile.read(2)</tt>
</tt>
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"><tt class="py-comment"># self.RampSelection = struct.unpack("=H",self.RampSelection)[0]</tt>
</tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line">
</tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"><tt class="py-comment"># self.TimingMode = infile.read(2)</tt>
</tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"><tt class="py-comment"># self.TimingMode = struct.unpack("=H",self.TimingMode)[0]</tt>
</tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line">
</tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"><tt class="py-comment"># self.Bandwidth = infile.read(2)</tt>
</tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"><tt class="py-comment"># self.Bandwidth = struct.unpack("=H",self.Bandwidth)[0]</tt>
</tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line">
</tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"><tt class="py-comment"># self.ARCIntegrator = infile.read(2)</tt>
</tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"><tt class="py-comment"># self.ARCIntegrator = struct.unpack("=H",self.ARCIntegrator)[0]</tt>
</tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line">
</tt>
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"><tt class="py-comment"># self.ARCPostIntegrator = infile.read(2)</tt>
</tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"><tt class="py-comment"># self.ARCPostIntegrator = struct.unpack("=H",self.ARCPostIntegrator)[0]</tt>
</tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line">
</tt>
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"><tt class="py-comment"># self.NumberOfRows = infile.read(4)</tt>
</tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"><tt class="py-comment"># self.NumberOfRows = struct.unpack("=L",self.NumberOfRows)[0]</tt>
</tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line">
</tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"><tt class="py-comment"># self.RowEnable = infile.read(2)</tt>
</tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"><tt class="py-comment"># self.RowEnable = struct.unpack("=H",self.RowEnable)[0]</tt>
</tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line">
</tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"><tt class="py-comment"># self.EnableStretch = infile.read(2)</tt>
</tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"><tt class="py-comment"># self.EnableStretch = struct.unpack("=H",self.EnableStretch)[0]</tt>
</tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line">
</tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"><tt class="py-comment"># self.CompEnable = infile.read(2)</tt>
</tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"><tt class="py-comment"># self.CompEnable = struct.unpack("=H",self.CompEnable)[0]</tt>
</tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line">
</tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"><tt class="py-comment"># self.CompStretch = infile.read(2)</tt>
</tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"><tt class="py-comment"># self.CompStretch = struct.unpack("=H",self.CompStretch)[0]</tt>
</tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line">
</tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"><tt class="py-comment"># self.LeftEvenTristate = infile.read(2)</tt>
</tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"><tt class="py-comment"># self.LeftEvenTristate = struct.unpack("=H",self.LeftEvenTristate)[0]</tt>
</tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line">
</tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"><tt class="py-comment"># self.RightOddTristate = infile.read(2)</tt>
</tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"><tt class="py-comment"># self.RightOddTristate = struct.unpack("=H",self.RightOddTristate)[0]</tt>
</tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line">
</tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"><tt class="py-comment"># self.TestModeSelect = infile.read(4)</tt>
</tt>
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"><tt class="py-comment"># self.TestModeSelect = struct.unpack("=L",self.TestModeSelect)[0]</tt>
</tt>
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line">
</tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"><tt class="py-comment"># self.AnalogTestSource = infile.read(4)</tt>
</tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"><tt class="py-comment"># self.AnalogTestSource = struct.unpack("=L",self.AnalogTestSource)[0]</tt>
</tt>
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line">
</tt>
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"><tt class="py-comment"># self.VCommonSelect = infile.read(4)</tt>
</tt>
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"><tt class="py-comment"># self.VCommonSelect = struct.unpack("=L",self.VCommonSelect)[0]</tt>
</tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line">
</tt>
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"><tt class="py-comment"># self.DRCColumnSum = infile.read(4)</tt>
</tt>
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"><tt class="py-comment"># self.DRCColumnSum = struct.unpack("=L",self.DRCColumnSum)[0]</tt>
</tt>
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line">
</tt>
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternFrameDelta = infile.read(4)</tt>
</tt>
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternFrameDelta = struct.unpack("=L",self.TestPatternFrameDelta)[0]</tt>
</tt>
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line">
</tt>
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternRowDelta = infile.read(4)</tt>
</tt>
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternRowDelta = struct.unpack("=L",self.TestPatternRowDelta)[0]</tt>
</tt>
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line">
</tt>
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternColumnDelta = infile.read(4)</tt>
</tt>
-<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternColumnDelta = struct.unpack("=L",self.TestPatternColumnDelta)[0]</tt>
</tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line">
</tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorHorizontalFlip = infile.read(2)</tt>
</tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorHorizontalFlip = struct.unpack("=H",self.DetectorHorizontalFlip)[0]</tt>
</tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line">
</tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorVerticalFlip = infile.read(2)</tt>
</tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorVerticalFlip = struct.unpack("=H",self.DetectorVerticalFlip)[0]</tt>
</tt>
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line">
</tt>
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"><tt class="py-comment"># self.DFNAutoScrubOnOff = infile.read(2)</tt>
</tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"><tt class="py-comment"># self.DFNAutoScrubOnOff = struct.unpack("=H",self.DFNAutoScrubOnOff)[0]</tt>
</tt>
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line">
</tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"><tt class="py-comment"># self.FiberChannelTimeOutInMicrosecs = infile.read(4)</tt>
</tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"><tt class="py-comment"># self.FiberChannelTimeOutInMicrosecs = struct.unpack("=L",self.FiberChannelTimeOutInMicrosecs)[0]</tt>
</tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line">
</tt>
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"><tt class="py-comment"># self.DFNAutoScrubDelayInMicrosecs = infile.read(4)</tt>
</tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"><tt class="py-comment"># self.DFNAutoScrubDelayInMicrosecs = struct.unpack("=L",self.DFNAutoScrubDelayInMicrosecs)[0]</tt>
</tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line">
</tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"><tt class="py-comment"># self.StoreAECROI = infile.read(2)</tt>
</tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"><tt class="py-comment"># self.StoreAECROI = struct.unpack("=H",self.StoreAECROI)[0]</tt>
</tt>
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line">
</tt>
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternSaturationValue = infile.read(2)</tt>
</tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternSaturationValue = struct.unpack("=H",self.TestPatternSaturationValue)[0]</tt>
</tt>
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line">
</tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternSeed = infile.read(4)</tt>
</tt>
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"><tt class="py-comment"># self.TestPatternSeed = struct.unpack("=L",self.TestPatternSeed)[0]</tt>
</tt>
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line">
</tt>
-<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"><tt class="py-comment"># self.ExposureTimeInMillisecs = infile.read(4) </tt>
</tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"><tt class="py-comment"># self.ExposureTimeInMillisecs = struct.unpack("=f",self.ExposureTimeInMillisecs)[0]</tt>
</tt>
-<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line">
</tt>
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"><tt class="py-comment"># self.FrameRateInFps = infile.read(4) </tt>
</tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"><tt class="py-comment"># self.FrameRateInFps = struct.unpack("=f",self.FrameRateInFps)[0]</tt>
</tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line">
</tt>
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"><tt class="py-comment"># self.kVp = infile.read(4) </tt>
</tt>
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"><tt class="py-comment"># self.kVp = struct.unpack("=f",self.kVp)[0]</tt>
</tt>
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line">
</tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"><tt class="py-comment"># self.mA = infile.read(4) </tt>
</tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"><tt class="py-comment"># self.mA = struct.unpack("=f",self.mA)[0]</tt>
</tt>
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line">
</tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"><tt class="py-comment"># self.mAs = infile.read(4) </tt>
</tt>
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"><tt class="py-comment"># self.mAs = struct.unpack("=f",self.mAs)[0]</tt>
</tt>
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line">
</tt>
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"><tt class="py-comment"># self.FocalSpotInMM = infile.read(4) </tt>
</tt>
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"><tt class="py-comment"># self.FocalSpotInMM = struct.unpack("=f",self.FocalSpotInMM)[0]</tt>
</tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line">
</tt>
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"><tt class="py-comment"># self.GeneratorType = infile.read(20)</tt>
</tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line">
</tt>
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"><tt class="py-comment"># self.StrobeIntensityInFtL = infile.read(4) </tt>
</tt>
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"><tt class="py-comment"># self.StrobeIntensityInFtL = struct.unpack("=f",self.StrobeIntensityInFtL)[0]</tt>
</tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line">
</tt>
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"><tt class="py-comment"># self.NDFilterSelection = infile.read(2) </tt>
</tt>
-<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"><tt class="py-comment"># self.NDFilterSelection = struct.unpack("=H",self.NDFilterSelection)[0]</tt>
</tt>
-<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line">
</tt>
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"><tt class="py-comment"># self.RefRegTemp1 = infile.read(8) </tt>
</tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"><tt class="py-comment"># self.RefRegTemp1 = struct.unpack("=d",self.RefRegTemp1)[0]</tt>
</tt>
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line">
</tt>
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"><tt class="py-comment"># self.RefRegTemp2 = infile.read(8) </tt>
</tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"><tt class="py-comment"># self.RefRegTemp2 = struct.unpack("=d",self.RefRegTemp2)[0]</tt>
</tt>
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line">
</tt>
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"><tt class="py-comment"># self.RefRegTemp3 = infile.read(8) </tt>
</tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"><tt class="py-comment"># self.RefRegTemp3 = struct.unpack("=d",self.RefRegTemp3)[0]</tt>
</tt>
-<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line">
</tt>
-<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"><tt class="py-comment"># self.Humidity1 = infile.read(4) </tt>
</tt>
-<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"><tt class="py-comment"># self.Humidity1 = struct.unpack("=f",self.Humidity1)[0]</tt>
</tt>
-<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line">
</tt>
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"><tt class="py-comment"># self.Humidity2 = infile.read(4) </tt>
</tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"><tt class="py-comment"># self.Humidity2 = struct.unpack("=f",self.Humidity2)[0]</tt>
</tt>
-<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line">
</tt>
-<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorControlTemp = infile.read(8) </tt>
</tt>
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorControlTemp = struct.unpack("=d",self.DetectorControlTemp)[0]</tt>
</tt>
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line">
</tt>
-<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"><tt class="py-comment"># self.DoseValueInmR = infile.read(8) </tt>
</tt>
-<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"><tt class="py-comment"># self.DoseValueInmR = struct.unpack("=d",self.DoseValueInmR)[0]</tt>
</tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line">
</tt>
-<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"><tt class="py-comment"># self.TargetLevelROIRow0 = infile.read(2)</tt>
</tt>
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"><tt class="py-comment"># self.TargetLevelROIRow0 = struct.unpack("=H",self.TargetLevelROIRow0)[0]</tt>
</tt>
-<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line">
</tt>
-<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"><tt class="py-comment"># self.TargetLevelROICol0 = infile.read(2)</tt>
</tt>
-<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"><tt class="py-comment"># self.TargetLevelROICol0 = struct.unpack("=H",self.TargetLevelROICol0)[0]</tt>
</tt>
-<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line">
</tt>
-<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"><tt class="py-comment"># self.TargetLevelROIRow1 = infile.read(2)</tt>
</tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"><tt class="py-comment"># self.TargetLevelROIRow1 = struct.unpack("=H",self.TargetLevelROIRow1)[0]</tt>
</tt>
-<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line">
</tt>
-<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"><tt class="py-comment"># self.TargetLevelROICol1 = infile.read(2)</tt>
</tt>
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"><tt class="py-comment"># self.TargetLevelROICol1 = struct.unpack("=H",self.TargetLevelROICol1)[0]</tt>
</tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line">
</tt>
-<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"><tt class="py-comment"># self.FrameNumberForTargetLevelROI = infile.read(2)</tt>
</tt>
-<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"><tt class="py-comment"># self.FrameNumberForTargetLevelROI = struct.unpack("=H",self.FrameNumberForTargetLevelROI)[0]</tt>
</tt>
-<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line">
</tt>
-<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"><tt class="py-comment"># self.PercentRangeForTargetLevel = infile.read(2)</tt>
</tt>
-<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"><tt class="py-comment"># self.PercentRangeForTargetLevel = struct.unpack("=H",self.PercentRangeForTargetLevel)[0]</tt>
</tt>
-<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line">
</tt>
-<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"><tt class="py-comment"># self.TargetValue = infile.read(2)</tt>
</tt>
-<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"><tt class="py-comment"># self.TargetValue = struct.unpack("=H",self.TargetValue)[0]</tt>
</tt>
-<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line">
</tt>
-<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"><tt class="py-comment"># self.ComputedMedianValue = infile.read(2)</tt>
</tt>
-<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"><tt class="py-comment"># self.ComputedMedianValue = struct.unpack("=H",self.ComputedMedianValue)[0]</tt>
</tt>
-<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line">
</tt>
-<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"><tt class="py-comment"># self.LoadZero = infile.read(2)</tt>
</tt>
-<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"><tt class="py-comment"># self.LoadZero = struct.unpack("=H",self.LoadZero)[0]</tt>
</tt>
-<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line">
</tt>
-<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"><tt class="py-comment"># self.MaxLUTOut = infile.read(2)</tt>
</tt>
-<a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"><tt class="py-comment"># self.MaxLUTOut = struct.unpack("=H",self.MaxLUTOut)[0]</tt>
</tt>
-<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line">
</tt>
-<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"><tt class="py-comment"># self.MinLUTOut = infile.read(2)</tt>
</tt>
-<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"><tt class="py-comment"># self.MinLUTOut = struct.unpack("=H",self.MinLUTOut)[0]</tt>
</tt>
-<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line">
</tt>
-<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"><tt class="py-comment"># self.MaxLinear = infile.read(2)</tt>
</tt>
-<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"><tt class="py-comment"># self.MaxLinear = struct.unpack("=H",self.MaxLinear)[0]</tt>
</tt>
-<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line">
</tt>
-<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"><tt class="py-comment"># self.Reserved = infile.read(2)</tt>
</tt>
-<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"><tt class="py-comment"># self.Reserved = struct.unpack("=H",self.Reserved)[0]</tt>
</tt>
-<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line">
</tt>
-<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"><tt class="py-comment"># self.ElectronsPerCount = infile.read(2)</tt>
</tt>
-<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"><tt class="py-comment"># self.ElectronsPerCount = struct.unpack("=H",self.ElectronsPerCount)[0]</tt>
</tt>
-<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line">
</tt>
-<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"><tt class="py-comment"># self.ModeGain = infile.read(2)</tt>
</tt>
-<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"><tt class="py-comment"># self.ModeGain = struct.unpack("=H",self.ModeGain)[0]</tt>
</tt>
-<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line">
</tt>
-<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"><tt class="py-comment"># self.TemperatureInDegC = infile.read(8)</tt>
</tt>
-<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"><tt class="py-comment"># self.TemperatureInDegC = struct.unpack("=d",self.TemperatureInDegC)[0]</tt>
</tt>
-<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line">
</tt>
-<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"><tt class="py-comment"># self.LineRepaired = infile.read(2)</tt>
</tt>
-<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"><tt class="py-comment"># self.LineRepaired = struct.unpack("=H",self.LineRepaired)[0]</tt>
</tt>
-<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line">
</tt>
-<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"><tt class="py-comment"># self.LineRepairFileName = infile.read(100)</tt>
</tt>
-<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line">
</tt>
-<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"><tt class="py-comment"># self.CurrentLongitudinalInMM = infile.read(4)</tt>
</tt>
-<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"><tt class="py-comment"># self.CurrentLongitudinalInMM = struct.unpack("=f",self.CurrentLongitudinalInMM)[0]</tt>
</tt>
-<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line">
</tt>
-<a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"><tt class="py-comment"># self.CurrentTransverseInMM = infile.read(4)</tt>
</tt>
-<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"><tt class="py-comment"># self.CurrentTransverseInMM = struct.unpack("=f",self.CurrentTransverseInMM)[0]</tt>
</tt>
-<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line">
</tt>
-<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"><tt class="py-comment"># self.CurrentCircularInMM = infile.read(4)</tt>
</tt>
-<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"><tt class="py-comment"># self.CurrentCircularInMM = struct.unpack("=f",self.CurrentCircularInMM)[0]</tt>
</tt>
-<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line">
</tt>
-<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"><tt class="py-comment"># self.CurrentFilterSelection = infile.read(4)</tt>
</tt>
-<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"><tt class="py-comment"># self.CurrentFilterSelection = struct.unpack("=L",self.CurrentFilterSelection)[0]</tt>
</tt>
-<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line">
</tt>
-<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"><tt class="py-comment"># self.DisableScrubAck = infile.read(2)</tt>
</tt>
-<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"><tt class="py-comment"># self.DisableScrubAck = struct.unpack("=H",self.DisableScrubAck)[0]</tt>
</tt>
-<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line">
</tt>
-<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"><tt class="py-comment"># self.ScanModeSelect = infile.read(2)</tt>
</tt>
-<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"><tt class="py-comment"># self.ScanModeSelect = struct.unpack("=H",self.ScanModeSelect)[0]</tt>
</tt>
-<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line">
</tt>
-<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorAppSwVersion = infile.read(20) </tt>
</tt>
-<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line">
</tt>
-<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorNIOSVersion = infile.read(20) </tt>
</tt>
-<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line">
</tt>
-<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorPeripheralSetVersion = infile.read(20) </tt>
</tt>
-<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line">
</tt>
-<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"><tt class="py-comment"># self.DetectorPhysicalAddress = infile.read(20)</tt>
</tt>
-<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line">
</tt>
-<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"><tt class="py-comment"># self.PowerDown = infile.read(2)</tt>
</tt>
-<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"><tt class="py-comment"># self.PowerDown = struct.unpack("=H",self.PowerDown)[0]</tt>
</tt>
-<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line">
</tt>
-<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"><tt class="py-comment"># self.InitialVoltageLevel_VCOMMON = infile.read(8)</tt>
</tt>
-<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"><tt class="py-comment"># self.InitialVoltageLevel_VCOMMON = struct.unpack("=d",self.InitialVoltageLevel_VCOMMON)[0]</tt>
</tt>
-<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line">
</tt>
-<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"><tt class="py-comment"># self.FinalVoltageLevel_VCOMMON = infile.read(8)</tt>
</tt>
-<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"><tt class="py-comment"># self.FinalVoltageLevel_VCOMMON = struct.unpack("=d",self.FinalVoltageLevel_VCOMMON)[0]</tt>
</tt>
-<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line">
</tt>
-<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"><tt class="py-comment"># self.DmrCollimatorSpotSize = infile.read(10)</tt>
</tt>
-<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line">
</tt>
-<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"><tt class="py-comment"># self.DmrTrack = infile.read(5)</tt>
</tt>
-<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line">
</tt>
-<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"><tt class="py-comment"># self.DmrFilter = infile.read(5)</tt>
</tt>
-<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line">
</tt>
-<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"><tt class="py-comment"># self.FilterCarousel = infile.read(2)</tt>
</tt>
-<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"><tt class="py-comment"># self.FilterCarousel = struct.unpack("=H",self.FilterCarousel)[0]</tt>
</tt>
-<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line">
</tt>
-<a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"><tt class="py-comment"># self.Phantom = infile.read(20)</tt>
</tt>
-<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line">
</tt>
-<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"><tt class="py-comment"># self.SetEnableHighTime = infile.read(2)</tt>
</tt>
-<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"><tt class="py-comment"># self.SetEnableHighTime = struct.unpack("=H",self.SetEnableHighTime)[0]</tt>
</tt>
-<a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line">
</tt>
-<a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"><tt class="py-comment"># self.SetEnableLowTime = infile.read(2)</tt>
</tt>
-<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"><tt class="py-comment"># self.SetEnableLowTime = struct.unpack("=H",self.SetEnableLowTime)[0]</tt>
</tt>
-<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line">
</tt>
-<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"><tt class="py-comment"># self.SetCompHighTime = infile.read(2)</tt>
</tt>
-<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"><tt class="py-comment"># self.SetCompHighTime = struct.unpack("=H",self.SetCompHighTime)[0]</tt>
</tt>
-<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line">
</tt>
-<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"><tt class="py-comment"># self.SetCompLowTime = infile.read(2)</tt>
</tt>
-<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"><tt class="py-comment"># self.SetCompLowTime = struct.unpack("=H",self.SetCompLowTime)[0]</tt>
</tt>
-<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line">
</tt>
-<a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"><tt class="py-comment"># self.SetSyncLowTime = infile.read(2)</tt>
</tt>
-<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"><tt class="py-comment"># self.SetSyncLowTime = struct.unpack("=H",self.SetSyncLowTime)[0]</tt>
</tt>
-<a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line">
</tt>
-<a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"><tt class="py-comment"># self.SetConvertLowTime = infile.read(2)</tt>
</tt>
-<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"><tt class="py-comment"># self.SetConvertLowTime = struct.unpack("=H",self.SetConvertLowTime)[0]</tt>
</tt>
-<a name="L414"></a><tt class="py-lineno">414</tt> <tt class="py-line">
</tt>
-<a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"><tt class="py-comment"># self.SetSyncHighTime = infile.read(2)</tt>
</tt>
-<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"><tt class="py-comment"># self.SetSyncHighTime = struct.unpack("=H",self.SetSyncHighTime)[0]</tt>
</tt>
-<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line">
</tt>
-<a name="L418"></a><tt class="py-lineno">418</tt> <tt class="py-line"><tt class="py-comment"># self.SetEOLTime = infile.read(2)</tt>
</tt>
-<a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"><tt class="py-comment"># self.SetEOLTime = struct.unpack("=H",self.SetEOLTime)[0]</tt>
</tt>
-<a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line">
</tt>
-<a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"><tt class="py-comment"># self.SetRampOffsetTime = infile.read(2)</tt>
</tt>
-<a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"><tt class="py-comment"># self.SetRampOffsetTime = struct.unpack("=H",self.SetRampOffsetTime)[0]</tt>
</tt>
-<a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line">
</tt>
-<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"><tt class="py-comment"># self.FOVStartingValue = infile.read(2)</tt>
</tt>
-<a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"><tt class="py-comment"># self.FOVStartingValue = struct.unpack("=H",self.FOVStartingValue)[0]</tt>
</tt>
-<a name="L426"></a><tt class="py-lineno">426</tt> <tt class="py-line">
</tt>
-<a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"><tt class="py-comment"># self.ColumnBinning = infile.read(2)</tt>
</tt>
-<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"><tt class="py-comment"># self.ColumnBinning = struct.unpack("=H",self.ColumnBinning)[0]</tt>
</tt>
-<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line">
</tt>
-<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"><tt class="py-comment"># self.RowBinning = infile.read(2)</tt>
</tt>
-<a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"><tt class="py-comment"># self.RowBinning = struct.unpack("=H",self.RowBinning)[0]</tt>
</tt>
-<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line">
</tt>
-<a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"><tt class="py-comment"># self.BorderColumns64 = infile.read(2)</tt>
</tt>
-<a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"><tt class="py-comment"># self.BorderColumns64 = struct.unpack("=H",self.BorderColumns64)[0]</tt>
</tt>
-<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line">
</tt>
-<a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"><tt class="py-comment"># self.BorderRows64 = infile.read(2)</tt>
</tt>
-<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"><tt class="py-comment"># self.BorderRows64 = struct.unpack("=H",self.BorderRows64)[0]</tt>
</tt>
-<a name="L438"></a><tt class="py-lineno">438</tt> <tt class="py-line">
</tt>
-<a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"><tt class="py-comment"># self.FETOffRows64 = infile.read(2)</tt>
</tt>
-<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"><tt class="py-comment"># self.FETOffRows64 = struct.unpack("=H",self.FETOffRows64)[0]</tt>
</tt>
-<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line">
</tt>
-<a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"><tt class="py-comment"># self.FOVStartColumn128 = infile.read(2)</tt>
</tt>
-<a name="L443"></a><tt class="py-lineno">443</tt> <tt class="py-line"><tt class="py-comment"># self.FOVStartColumn128 = struct.unpack("=H",self.FOVStartColumn128)[0]</tt>
</tt>
-<a name="L444"></a><tt class="py-lineno">444</tt> <tt class="py-line">
</tt>
-<a name="L445"></a><tt class="py-lineno">445</tt> <tt class="py-line"><tt class="py-comment"># self.FOVStartRow128 = infile.read(2)</tt>
</tt>
-<a name="L446"></a><tt class="py-lineno">446</tt> <tt class="py-line"><tt class="py-comment"># self.FOVStartRow128 = struct.unpack("=H",self.FOVStartRow128)[0]</tt>
</tt>
-<a name="L447"></a><tt class="py-lineno">447</tt> <tt class="py-line">
</tt>
-<a name="L448"></a><tt class="py-lineno">448</tt> <tt class="py-line"><tt class="py-comment"># self.NumberOfColumns128 = infile.read(2)</tt>
</tt>
-<a name="L449"></a><tt class="py-lineno">449</tt> <tt class="py-line"><tt class="py-comment"># self.NumberOfColumns128 = struct.unpack("=H",self.NumberOfColumns128)[0]</tt>
</tt>
-<a name="L450"></a><tt class="py-lineno">450</tt> <tt class="py-line">
</tt>
-<a name="L451"></a><tt class="py-lineno">451</tt> <tt class="py-line"><tt class="py-comment"># self.NumberOfRows128 = infile.read(2)</tt>
</tt>
-<a name="L452"></a><tt class="py-lineno">452</tt> <tt class="py-line"><tt class="py-comment"># self.NumberOfRows128 = struct.unpack("=H",self.NumberOfRows128)[0]</tt>
</tt>
-<a name="L453"></a><tt class="py-lineno">453</tt> <tt class="py-line">
</tt>
-<a name="L454"></a><tt class="py-lineno">454</tt> <tt class="py-line"><tt class="py-comment"># self.VFPAquisition = infile.read(2000)</tt>
</tt>
-<a name="L455"></a><tt class="py-lineno">455</tt> <tt class="py-line">
</tt>
-<a name="L456"></a><tt class="py-lineno">456</tt> <tt class="py-line"><tt class="py-comment"># self.Comment = infile.read(200)</tt>
</tt>
-<a name="L457"></a><tt class="py-lineno">457</tt> <tt class="py-line">
</tt>
-<a name="L458"></a><tt class="py-lineno">458</tt> <tt class="py-line">
</tt>
-<a name="L459"></a><tt class="py-lineno">459</tt> <tt class="py-line">
</tt>
-<a name="GEimage.read"></a><div id="GEimage.read-def"><a name="L460"></a><tt class="py-lineno">460</tt> <a class="py-toggle" href="#" id="GEimage.read-toggle" onclick="return toggle('GEimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.GEimage_old.GEimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py-pa [...]
-</div><div id="GEimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="GEimage.read-expanded"><a name="L461"></a><tt class="py-lineno">461</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L462"></a><tt class="py-lineno">462</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and
</tt> </tt>
-<a name="L463"></a><tt class="py-lineno">463</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data
</tt> </tt>
-<a name="L464"></a><tt class="py-lineno">464</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L465"></a><tt class="py-lineno">465</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-38', 'header', 'link-3');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L466"></a><tt class="py-lineno">466</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-39', 'resetvals', 'link-39');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L467"></a><tt class="py-lineno">467</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-40', '_open', 'link-40');">_open</a></tt><tt class="py-op">(</tt><tt cla [...]
-<a name="L468"></a><tt class="py-lineno">468</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._re [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-41', '_readheader', 'link-41');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L469"></a><tt class="py-lineno">469</tt> <tt class="py-line"> <tt class="py-comment"># Compute image size</tt>
</tt>
-<a name="L470"></a><tt class="py-lineno">470</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L471"></a><tt class="py-lineno">471</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-42', 'dim1', 'link-42');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">sel [...]
-<a name="L472"></a><tt class="py-lineno">472</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-44', 'dim2', 'link-44');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">sel [...]
-<a name="L473"></a><tt class="py-lineno">473</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-46', 'bpp', 'link-46');">bpp</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt [...]
-<a name="L474"></a><tt class="py-lineno">474</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L475"></a><tt class="py-lineno">475</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"GE file"</tt><tt class="py-op">,</tt> <tt id="link-48" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-48', 'str', 'link-48');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \
</tt>
-<a name="L476"></a><tt class="py-lineno">476</tt> <tt class="py-line"> <tt class="py-string">"is corrupt, cannot read it"</tt><tt class="py-op">)</tt> </tt>
-<a name="L477"></a><tt class="py-lineno">477</tt> <tt class="py-line">
</tt>
-<a name="L478"></a><tt class="py-lineno">478</tt> <tt class="py-line"> <tt class="py-comment"># More than one image can be saved in a GE file</tt>
</tt>
-<a name="L479"></a><tt class="py-lineno">479</tt> <tt class="py-line"> <tt class="py-comment"># Will only load the first one</tt>
</tt>
-<a name="L480"></a><tt class="py-lineno">480</tt> <tt class="py-line">
</tt>
-<a name="L481"></a><tt class="py-lineno">481</tt> <tt class="py-line">
</tt>
-<a name="L482"></a><tt class="py-lineno">482</tt> <tt class="py-line"> <tt class="py-comment"># Go to the beginning of the file</tt>
</tt>
-<a name="L483"></a><tt class="py-lineno">483</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L484"></a><tt class="py-lineno">484</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-49', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'HeaderSizeInBytes'</tt><tt class= [...]
-<a name="L485"></a><tt class="py-lineno">485</tt> <tt class="py-line">
</tt>
-<a name="L486"></a><tt class="py-lineno">486</tt> <tt class="py-line"> <tt class="py-name">ReadBytes</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-51', 'dim1', 'link-42');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="fabio.edfim [...]
-<a name="L487"></a><tt class="py-lineno">487</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-54', 'read', 'link-2');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">ReadBytes</tt><tt class="py-op">)</tt> </tt>
-<a name="L488"></a><tt class="py-lineno">488</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L489"></a><tt class="py-lineno">489</tt> <tt class="py-line">
</tt>
-<a name="L490"></a><tt class="py-lineno">490</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L491"></a><tt class="py-lineno">491</tt> <tt class="py-line">
</tt>
-<a name="L492"></a><tt class="py-lineno">492</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L493"></a><tt class="py-lineno">493</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-55', 'data', 'link-55');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" on [...]
-<a name="L494"></a><tt class="py-lineno">494</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L495"></a><tt class="py-lineno">495</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt id="link-58" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-58', 'len', 'link-58');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt [...]
-<a name="L496"></a><tt class="py-lineno">496</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> \
</tt>
-<a name="L497"></a><tt class="py-lineno">497</tt> <tt class="py-line"> <tt class="py-string">'Size spec in GE-header does not match size of image data field'</tt> </tt>
-<a name="L498"></a><tt class="py-lineno">498</tt> <tt class="py-line">
</tt>
-<a name="L499"></a><tt class="py-lineno">499</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-61', 'bytecode', 'link-61');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-62', 'data', 'link-55');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> </tt>
-<a name="L500"></a><tt class="py-lineno">500</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L501"></a><tt class="py-lineno">501</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div></div><a name="L502"></a><tt class="py-lineno">502</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- <th> <a
- href="help.html">Help</a> </th>
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- <th class="navbar" width="100%"></th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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- <!--
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.GEimage_old.GEimage-class.html b/doc/html/fabio.GEimage_old.GEimage-class.html
deleted file mode 100644
index 5a98bb5..0000000
--- a/doc/html/fabio.GEimage_old.GEimage-class.html
+++ /dev/null
@@ -1,368 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.GEimage_old.GEimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.GEimage_old-module.html">Module GEimage_old</a> ::
- Class GEimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.GEimage_old.GEimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class GEimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.GEimage_old-pysrc.html#GEimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">GEimage</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.GEimage_old.GEimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Must be overridden in classes</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage_old-pysrc.html#GEimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.GEimage_old.GEimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.GEimage_old-pysrc.html#GEimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#write">write</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.GEimage_old-pysrc.html#GEimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Must be overridden in classes</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.GEimage_old-pysrc.html#GEimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Read in header into self.header and
- the data into self.data
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.HiPiCimage-module.html b/doc/html/fabio.HiPiCimage-module.html
deleted file mode 100644
index f38cd2d..0000000
--- a/doc/html/fabio.HiPiCimage-module.html
+++ /dev/null
@@ -1,177 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.HiPiCimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module HiPiCimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.HiPiCimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module HiPiCimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.HiPiCimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
- + Jon Wright, ESRF
-
-Information about the file format from Masakatzu Kobayashi is highly appreciated
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.HiPiCimage.HiPiCimage-class.html" class="summary-name">HiPiCimage</a><br />
- Read HiPic images e.g.
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("HiPiCimage")">logging.getLogger("HiPiCimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.HiPiCimage-pysrc.html b/doc/html/fabio.HiPiCimage-pysrc.html
deleted file mode 100644
index 0619089..0000000
--- a/doc/html/fabio.HiPiCimage-pysrc.html
+++ /dev/null
@@ -1,478 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.HiPiCimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module HiPiCimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.HiPiCimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.HiPiCimage-module.html">Module fabio.HiPiCimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"> + Jon Wright, ESRF</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring">Information about the file format from Masakatzu Kobayashi is highly appreciated</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"HiPiCimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> </tt>
-<a name="HiPiCimage"></a><div id="HiPiCimage-def"><a name="L20"></a><tt class="py-lineno"> 20</tt> <a class="py-toggle" href="#" id="HiPiCimage-toggle" onclick="return toggle('HiPiCimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.HiPiCimage.HiPiCimage-class.html">HiPiCimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="HiPiCimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="HiPiCimage-expanded"><a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt class="py-docstring">""" Read HiPic images e.g. collected with a Hamamatsu CCD camera"""</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> </tt>
-<a name="HiPiCimage._readheader"></a><div id="HiPiCimage._readheader-def"><a name="L24"></a><tt class="py-lineno"> 24</tt> <a class="py-toggle" href="#" id="HiPiCimage._readheader-toggle" onclick="return toggle('HiPiCimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.HiPiCimage.HiPiCimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-par [...]
-</div><div id="HiPiCimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="HiPiCimage._readheader-expanded"><a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-docstring"> Read in a header from an already open file</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-name">Image_tag</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXD [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-3', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">Image_tag</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-name">Comment_len</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-4" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-4', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-name">Dim_1</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-5', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-name">Dim_2</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-6', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-name">Dim_1_offset</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-7', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-name">Dim_2_offset</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-8', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-name">HeaderType</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-9', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-name">Dump</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-10', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">50</tt><tt class="py-op">)</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-name">Comment</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-11', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">Comment_len</tt><tt class="py-op">)</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-12', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Image_tag'</tt><tt class="py-op">]</tt> <tt class [...]
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-13', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Dim_1'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">Dim_1</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-14', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Dim_2'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">Dim_2</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-15', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Dim_1_offset'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">Dim_1_offset</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-16', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Dim_2_offset'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">Dim_2_offset</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-comment">#self.header['Comment'] = Comment</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">Image_tag</tt> <tt class="py-op">!=</tt> <tt class="py-string">'IM'</tt> <tt class="py-op">:</tt> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-comment"># This does not look like an HiPic file</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"no opening. Corrupt header of HiPic file "</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt id="link-17" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-17', 'str', 'link-17');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">name</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-name">Comment_split</tt> <tt class="py-op">=</tt> <tt class="py-name">Comment</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">Comment</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'\x00'</tt><tt class="py-op">)</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><t [...]
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">topcomment</tt> <tt class="py-keyword">in</tt> <tt class="py-name">Comment_split</tt><tt class="py-op">:</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-name">topsplit</tt> <tt class="py-op">=</tt> <tt class="py-name">topcomment</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">','</tt><tt class="py-op">)</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">line</tt> <tt class="py-keyword">in</tt> <tt class="py-name">topsplit</tt><tt class="py-op">:</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'='</tt> <tt class="py-keyword">in</tt> <tt class="py-name">line</tt><tt class="py-op">:</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt id="link-18" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-18', 'key', 'link-18');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class= [...]
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-comment"># Users cannot type in significant whitespace</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt id="link-19" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-19', 'key', 'link-18');">key</a></tt> <tt class="py-op">=</tt> <tt id="link-20" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-20', 'key', 'link-18');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">rstrip</tt><tt cla [...]
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimage.edfimage-class.html#header_keys"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-21', 'header_keys', 'link-21');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt [...]
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-23', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-24" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-24', 'key', 'link-18');">key</a> [...]
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-25', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-26" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-26', 'key', 'link-18');">key</a> [...]
-</div><a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> </tt>
-<a name="HiPiCimage.read"></a><div id="HiPiCimage.read-def"><a name="L62"></a><tt class="py-lineno"> 62</tt> <a class="py-toggle" href="#" id="HiPiCimage.read-toggle" onclick="return toggle('HiPiCimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.HiPiCimage.HiPiCimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt [...]
-</div><div id="HiPiCimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="HiPiCimage.read-expanded"><a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-27', 'header', 'link-12');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-28', 'resetvals', 'link-28');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-29', '_open', 'link-29');">_open</a></tt><tt class="py-op">(</tt><tt clas [...]
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._rea [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-30', '_readheader', 'link-30');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-comment"># Compute image size</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-31', 'dim1', 'link-31');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self [...]
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-33', 'dim2', 'link-33');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self [...]
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"HiPic file"</tt><tt class="py-op">,</tt> <tt id="link-35" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-35', 'str', 'link-17');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-string">"is corrupt, cannot read it"</tt><tt class="py-op">)</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt id="link-36" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-36', 'bytecode', 'link-36');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-37', 'bpp', 'link-37');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-38" class="py-name" targets="Method fabio.file_series.file_series.len()= [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-40', 'tostring', 'link-40');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-comment"># Read image data</tt> </tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-41', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-42', 'dim1', 'link-31');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fab [...]
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-comment">#now read the data into the array</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-45', 'data', 'link-45');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">,</tt> <tt id="link-46" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-46', 'bytecode', 'link-36');">bytecode</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-47', 'dim2', 'link-33');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-n [...]
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt id="link-49" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-49', 'len', 'link-38');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt id="link-50" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" o [...]
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> \ </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-string">'Size spec in HiPic-header does not match size of image data field'</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-54', 'bytecode', 'link-36');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-55', 'data', 'link-45');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-comment"># Sometimes these files are not saved as 12 bit,</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-comment"># But as 16 bit after bg subtraction - which results </tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-comment"># negative values saved as 16bit. Therefore values higher </tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-comment"># 4095 is really negative values</tt> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-56', 'data', 'link-45');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">max</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">4095</tt><tt class="py-op">:</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">gt12bit</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-57', 'data', 'link-45');">data</a></tt> <tt class="py-op">></tt> <tt class="py-number">4095</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-58', 'data', 'link-45');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-59', 'data', 'link-45');">data</a></tt> <tt class="py-op">-</tt> <tt class="py-name">gt12bit</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-number">2</tt> <tt class="py-op">**</tt> <tt class="py-number">16</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-comment"># ensure the PIL image is reset</tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div></div><a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
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diff --git a/doc/html/fabio.HiPiCimage.HiPiCimage-class.html b/doc/html/fabio.HiPiCimage.HiPiCimage-class.html
deleted file mode 100644
index b5ed99b..0000000
--- a/doc/html/fabio.HiPiCimage.HiPiCimage-class.html
+++ /dev/null
@@ -1,369 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.HiPiCimage-module.html">Module HiPiCimage</a> ::
- Class HiPiCimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.HiPiCimage.HiPiCimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class HiPiCimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.HiPiCimage-pysrc.html#HiPiCimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">HiPiCimage</strong>
-</pre>
-
-<hr />
-<p>Read HiPic images e.g. collected with a Hamamatsu CCD camera</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.HiPiCimage.HiPiCimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Read in a header from an already open file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.HiPiCimage-pysrc.html#HiPiCimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.HiPiCimage.HiPiCimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.HiPiCimage-pysrc.html#HiPiCimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#write">write</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.HiPiCimage-pysrc.html#HiPiCimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in a header from an already open file</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.HiPiCimage-pysrc.html#HiPiCimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Read in header into self.header and
- the data into self.data
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.OXDimage-module.html b/doc/html/fabio.OXDimage-module.html
deleted file mode 100644
index df525f3..0000000
--- a/doc/html/fabio.OXDimage-module.html
+++ /dev/null
@@ -1,335 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.OXDimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module OXDimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.OXDimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module OXDimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.OXDimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Reads Oxford Diffraction Sapphire 3 images
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
- + Jon Wright, ESRF
- + Gaël Goret, ESRF
- + Jérôme Kieffer, ESRF
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.OXDimage.OXDimage-class.html" class="summary-name">OXDimage</a><br />
- Oxford Diffraction Sapphire 3 images reader/writer class
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.OXDimage.Section-class.html" class="summary-name">Section</a><br />
- Small helper class for writing binary headers
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.OXDimage-module.html#__doc__" class="summary-name">__doc__</a> = <code title=""""
-Reads Oxford Diffraction Sapphire 3 images
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dim\
-ensions
- Risoe National Laboratory
- Frederiksborgvej 399
-...">"<code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("OXDimage")">logging.getLogger("OXDimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="rad2deg"></a><span class="summary-name">rad2deg</span> = <code title="<ufunc 'rad2deg'>"><ufunc 'rad2deg'></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="deg2rad"></a><span class="summary-name">deg2rad</span> = <code title="<ufunc 'deg2rad'>"><ufunc 'deg2rad'></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.OXDimage-module.html#DETECTOR_TYPES" class="summary-name">DETECTOR_TYPES</a> = <code title="{0: 'Sapphire/KM4CCD (1x1: 0.06mm, 2x2: 0.12mm)',
- 1: 'Sapphire2-Kodak (1x1: 0.06mm, 2x2: 0.12mm)',
- 2: 'Sapphire3-Kodak (1x1: 0.03mm, 2x2: 0.06mm, 4x4: 0.12mm)',
- 3: 'Onyx-Kodak (1x1: 0.06mm, 2x2: 0.12mm, 4x4: 0.24mm)',
- 4: 'Unknown Oxford diffraction detector'}"><code class="variable-group">{</code>0<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Sapphire/KM4CCD (1x1: 0.06mm, 2x2: 0.12m</code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.OXDimage-module.html#DEFAULT_HEADERS" class="summary-name">DEFAULT_HEADERS</a> = <code title="{'ASCII Section size in Byte': 256,
- 'Compression': 'TY1',
- 'General Section size in Byte': 512,
- 'Header Size In Bytes': 5120,
- 'Header Version': 'OD SAPPHIRE 3.0',
- 'History Section in Byte': 2048,
- 'KM4 Section size in Byte': 1024,
- 'NSUPPLEMENT': 0,
-..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">ASCII Section size in Byte</code><code class="variable-quote">'</code><code class="variable-op">: </code>256<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">Compres</code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
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-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
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- <td colspan="2" class="table-header">
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- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- </td>
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-</table>
-<a name="__doc__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">__doc__</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-"""
-Reads Oxford Diffraction Sapphire 3 images
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dim<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-ensions
- Risoe National Laboratory
- Frederiksborgvej 399
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="DETECTOR_TYPES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">DETECTOR_TYPES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>0<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Sapphire/KM4CCD (1x1: 0.06mm, 2x2: 0.12mm)</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 1<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Sapphire2-Kodak (1x1: 0.06mm, 2x2: 0.12mm)</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 2<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Sapphire3-Kodak (1x1: 0.03mm, 2x2: 0.06mm, 4x4: 0.12mm)</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 3<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Onyx-Kodak (1x1: 0.06mm, 2x2: 0.12mm, 4x4: 0.24mm)</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 4<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Unknown Oxford diffraction detector</code><code class="variable-quote">'</code><code class="variable-group">}</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="DEFAULT_HEADERS"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">DEFAULT_HEADERS</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">ASCII Section size in Byte</code><code class="variable-quote">'</code><code class="variable-op">: </code>256<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Compression</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">TY1</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">General Section size in Byte</code><code class="variable-quote">'</code><code class="variable-op">: </code>512<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Header Size In Bytes</code><code class="variable-quote">'</code><code class="variable-op">: </code>5120<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Header Version</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">OD SAPPHIRE 3.0</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">History Section in Byte</code><code class="variable-quote">'</code><code class="variable-op">: </code>2048<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">KM4 Section size in Byte</code><code class="variable-quote">'</code><code class="variable-op">: </code>1024<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">NSUPPLEMENT</code><code class="variable-quote">'</code><code class="variable-op">: </code>0<code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
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-</html>
diff --git a/doc/html/fabio.OXDimage-pysrc.html b/doc/html/fabio.OXDimage-pysrc.html
deleted file mode 100644
index b95fb97..0000000
--- a/doc/html/fabio.OXDimage-pysrc.html
+++ /dev/null
@@ -1,1026 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.OXDimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
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- alink="#204080">
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- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module OXDimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.OXDimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.OXDimage-module.html">Module fabio.OXDimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt>
</tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8</tt>
</tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line">
</tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">__future__</tt> <tt class="py-keyword">import</tt> <tt class="py-name">with_statement</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.OXDimage.__doc__=fabio.OXDimage-module.html#__doc__,Variable fabio.binaryimage.__doc__=fabio.binaryimage-module.html#__doc__,Variable fabio.mar345image.__doc__=fabio.mar345image-module.html#__doc__"><a title="fabio.OXDimage.__doc__
-fabio.binaryimage.__doc__
-fabio.mar345image.__doc__" class="py-name" href="#" onclick="return doclink('link-0', '__doc__', 'link-0');">__doc__</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"""
</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-string">Reads Oxford Diffraction Sapphire 3 images
</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-string">
</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-string">Authors: Henning O. Sorensen & Erik Knudsen
</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-string"> Center for Fundamental Research: Metal Structures in Four Dimensions
</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-string"> Risoe National Laboratory
</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-string"> Frederiksborgvej 399
</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-string"> DK-4000 Roskilde
</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-string"> email:erik.knudsen at risoe.dk
</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-string">
</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-string"> + Jon Wright, ESRF
</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-string"> + Gaël Goret, ESRF
</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-string"> + Jérôme Kieffer, ESRF
</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-string">
</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line">
</tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">time</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">struct</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-1', 'logger', 'link-1');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"OXDimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-2" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-2');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-3" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-3', 'fabioimage', 'link-2');">fabioimage</a></tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-4" class="py-name" targets="Module fabio.compression=fabio.compression-module.html"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-4', 'compression', 'link-4');">compression</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name" targets="Function fabio.compression.decTY1()=fabio.compression-module.html#decTY1"><a tit [...]
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line">
</tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-keyword">from</tt> <tt class="py-name">numpy</tt> <tt class="py-keyword">import</tt> <tt id="link-7" class="py-name" targets="Variable fabio.OXDimage.rad2deg=fabio.OXDimage-module.html#rad2deg"><a title="fabio.OXDimage.rad2deg" class="py-name" href="#" onclick="return doclink('link-7', 'rad2deg', 'link-7');">rad2deg</a></tt><tt class="py-op">,</tt> <tt id="link-8" class="py-name" targets="Variable fab [...]
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> <tt class="py-comment">#naive implementation for very old numpy (v1.0.1 on MacOSX from Risoe)</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt id="link-9" class="py-name"><a title="fabio.OXDimage.rad2deg" class="py-name" href="#" onclick="return doclink('link-9', 'rad2deg', 'link-7');">rad2deg</a></tt> <tt class="py-op">=</tt> <tt class="py-keyword">lambda</tt> <tt class="py-name">x</tt><tt class="py-op">:</tt> <tt class="py-number">180.0</tt> <tt class="py-op">*</tt> <tt class="py-name">x</tt> <tt class="py-op">/</tt> <tt class="py-name">numpy</tt><t [...]
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt id="link-10" class="py-name"><a title="fabio.OXDimage.deg2rad" class="py-name" href="#" onclick="return doclink('link-10', 'deg2rad', 'link-8');">deg2rad</a></tt> <tt class="py-op">=</tt> <tt class="py-keyword">lambda</tt> <tt class="py-name">x</tt><tt class="py-op">:</tt> <tt class="py-name">x</tt> <tt class="py-op">*</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">pi</tt> <tt cl [...]
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line">
</tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt id="link-11" class="py-name" targets="Variable fabio.OXDimage.DETECTOR_TYPES=fabio.OXDimage-module.html#DETECTOR_TYPES"><a title="fabio.OXDimage.DETECTOR_TYPES" class="py-name" href="#" onclick="return doclink('link-11', 'DETECTOR_TYPES', 'link-11');">DETECTOR_TYPES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-number">0</tt><tt class="py-op">:</tt> <tt class="py-string">'Sapphire/KM4CCD ( [...]
</tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-number">1</tt><tt class="py-op">:</tt> <tt class="py-string">'Sapphire2-Kodak (1x1: 0.06mm, 2x2: 0.12mm)'</tt><tt class="py-op">,</tt>
</tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt class="py-number">2</tt><tt class="py-op">:</tt> <tt class="py-string">'Sapphire3-Kodak (1x1: 0.03mm, 2x2: 0.06mm, 4x4: 0.12mm)'</tt><tt class="py-op">,</tt>
</tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-number">3</tt><tt class="py-op">:</tt> <tt class="py-string">'Onyx-Kodak (1x1: 0.06mm, 2x2: 0.12mm, 4x4: 0.24mm)'</tt><tt class="py-op">,</tt>
</tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-number">4</tt><tt class="py-op">:</tt> <tt class="py-string">'Unknown Oxford diffraction detector'</tt><tt class="py-op">}</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line">
</tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt id="link-12" class="py-name" targets="Variable fabio.OXDimage.DEFAULT_HEADERS=fabio.OXDimage-module.html#DEFAULT_HEADERS"><a title="fabio.OXDimage.DEFAULT_HEADERS" class="py-name" href="#" onclick="return doclink('link-12', 'DEFAULT_HEADERS', 'link-12');">DEFAULT_HEADERS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">'Header Version'</tt><tt class="py-op">:</tt> <tt class="py-strin [...]
</tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-string">'Compression'</tt><tt class="py-op">:</tt> <tt class="py-string">"TY1"</tt><tt class="py-op">,</tt>
</tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-string">'Header Size In Bytes'</tt><tt class="py-op">:</tt> <tt class="py-number">5120</tt><tt class="py-op">,</tt>
</tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-string">"ASCII Section size in Byte"</tt><tt class="py-op">:</tt> <tt class="py-number">256</tt><tt class="py-op">,</tt>
</tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-string">"General Section size in Byte"</tt><tt class="py-op">:</tt> <tt class="py-number">512</tt><tt class="py-op">,</tt>
</tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-string">"Special Section size in Byte"</tt><tt class="py-op">:</tt> <tt class="py-number">768</tt><tt class="py-op">,</tt>
</tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-string">"KM4 Section size in Byte"</tt><tt class="py-op">:</tt> <tt class="py-number">1024</tt><tt class="py-op">,</tt>
</tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-string">"Statistic Section in Byte"</tt><tt class="py-op">:</tt> <tt class="py-number">512</tt><tt class="py-op">,</tt>
</tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-string">"History Section in Byte"</tt><tt class="py-op">:</tt> <tt class="py-number">2048</tt><tt class="py-op">,</tt>
</tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-string">'NSUPPLEMENT'</tt><tt class="py-op">:</tt><tt class="py-number">0</tt>
</tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="OXDimage"></a><div id="OXDimage-def"><a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line">
</tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <a class="py-toggle" href="#" id="OXDimage-toggle" onclick="return toggle('OXDimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.OXDimage.OXDimage-class.html">OXDimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="OXDimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="OXDimage-expanded"><a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt class="py-docstring"> Oxford Diffraction Sapphire 3 images reader/writer class
</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="OXDimage._readheader"></a><div id="OXDimage._readheader-def"><a name="L55"></a><tt class="py-lineno"> 55</tt> <a class="py-toggle" href="#" id="OXDimage._readheader-toggle" onclick="return toggle('OXDimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.OXDimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">infile</ [...]
-</div><div id="OXDimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="OXDimage._readheader-expanded"><a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line">
</tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line">
</tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-comment"># Ascii header part 256 byes long</tt>
</tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-13', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Header Version'</tt><tt class="py-op">]</tt> <tt [...]
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-14', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Compression'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-number [...]
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-15', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NX'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">block</tt>< [...]
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-16', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NY'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">block</tt>< [...]
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-17', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'OI'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">block</tt>< [...]
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-18', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'OL'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">block</tt>< [...]
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-19', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Header Size In Bytes'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py [...]
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-20', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'General Section size in Byte'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt c [...]
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-21', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Special Section size in Byte'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt c [...]
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-22', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'KM4 Section size in Byte'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class [...]
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-23', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Statistic Section in Byte'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt clas [...]
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-24', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'History Section in Byte'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class= [...]
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-25', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NSUPPLEMENT'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">bl [...]
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-26', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Time'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-number">5</tt [...]
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-27', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"ASCII Section size in Byte"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id [...]
</tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-op">-</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-29', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'General Section size in Byte'</tt><tt class="py-op">]</tt>\
</tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-op">-</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-30', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Special Section size in Byte'</tt><tt class="py-op">]</tt> \
</tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-op">-</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-31', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'KM4 Section size in Byte'</tt><tt class="py-op">]</tt>\
</tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-op">-</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-32', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Statistic Section in Byte'</tt><tt class="py-op">]</tt>\
</tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-op">-</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-33', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'History Section in Byte'</tt><tt class="py-op">]</tt>\
</tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-comment"># Skip to general section (NG) 512 byes long <<<<<<"</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-34', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"ASCII Section size in Byte"</tt>< [...]
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDima [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-35', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-36', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'General Section size in Byte'</tt><tt class="py-op">]</tt><tt class="py [...]
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-37', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Binning in x'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-38', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Binning in y'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-39', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Detector size x'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-na [...]
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-40', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Detector size y'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-na [...]
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-41', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Pixels in x'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name"> [...]
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-42', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Pixels in y'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name"> [...]
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-43', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'No of pixels'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line">
</tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-comment"># Speciel section (NS) 768 bytes long</tt>
</tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-44', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-45', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Special Section size in Byte'</tt><tt class="py-op">]</tt><tt class="py [...]
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-46', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Gain'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstr [...]
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-47', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Overflows flag'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-nam [...]
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-48', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Overflow after remeasure flag'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt>< [...]
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-49', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Overflow threshold'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="p [...]
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-50', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Exposure time in sec'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class= [...]
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-51', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Overflow time in sec'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class= [...]
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-52', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Monitor counts of raw image 1'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt>< [...]
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-53', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Monitor counts of raw image 2'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt>< [...]
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-54', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Monitor counts of overflow raw image 1'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op [...]
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-55', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Monitor counts of overflow raw image 2'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op [...]
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-56', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Unwarping'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">f [...]
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-57', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Detector type'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-58" class="py-name"><a title="fabio.OXDimage.DETECTOR_TYPE [...]
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-59', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Real pixel size x (mm)'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt clas [...]
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-60', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Real pixel size y (mm)'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt clas [...]
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line">
</tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-comment"># KM4 goniometer section (NK) 1024 bytes long</tt>
</tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-61', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-62', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'KM4 Section size in Byte'</tt><tt class="py-op">]</tt><tt class="py-op" [...]
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-comment"># Spatial correction file</tt>
</tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-63', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Spatial correction file'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">[</tt><tt cla [...]
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-64', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Spatial correction file date'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">[</tt><t [...]
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-comment"># Angles are in steps due to stepper motors - conversion factor RAD</tt>
</tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-comment"># angle[0] = omega, angle[1] = theta, angle[2] = kappa, angle[3] = phi, </tt>
</tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">start_angles_step</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-number">284</tt><tt class="py-op">:</tt><tt class="py-number">304</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-o [...]
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">end_angles_step</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-number">324</tt><tt class="py-op">:</tt><tt class="py-number">344</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op" [...]
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">step2rad</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-number">368</tt><tt class="py-op">:</tt><tt class="py-number">408</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt> [...]
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">step_angles_deg</tt> <tt class="py-op">=</tt> <tt id="link-65" class="py-name"><a title="fabio.OXDimage.rad2deg" class="py-name" href="#" onclick="return doclink('link-65', 'rad2deg', 'link-7');">rad2deg</a></tt><tt class="py-op">(</tt><tt class="py-name">step2rad</tt><tt class="py-op">)</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-comment"># calc angles</tt>
</tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">start_angles_deg</tt> <tt class="py-op">=</tt> <tt class="py-name">start_angles_step</tt> <tt class="py-op">*</tt> <tt class="py-name">step_angles_deg</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-name">end_angles_deg</tt> <tt class="py-op">=</tt> <tt class="py-name">end_angles_step</tt> <tt class="py-op">*</tt> <tt class="py-name">step_angles_deg</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-66', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Omega start in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">start_angles_deg</tt><tt class="py-op">[</tt>< [...]
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-67', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Theta start in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">start_angles_deg</tt><tt class="py-op">[</tt>< [...]
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-68', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Kappa start in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">start_angles_deg</tt><tt class="py-op">[</tt>< [...]
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-69', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Phi start in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">start_angles_deg</tt><tt class="py-op">[</tt><tt [...]
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-70', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Omega end in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">end_angles_deg</tt><tt class="py-op">[</tt><tt c [...]
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-71" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-71', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Theta end in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">end_angles_deg</tt><tt class="py-op">[</tt><tt c [...]
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-72', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Kappa end in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">end_angles_deg</tt><tt class="py-op">[</tt><tt c [...]
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-73', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Phi end in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">end_angles_deg</tt><tt class="py-op">[</tt><tt cla [...]
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-74', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Omega step in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">step_angles_deg</tt><tt class="py-op">[</tt><tt [...]
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-75', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Theta step in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">step_angles_deg</tt><tt class="py-op">[</tt><tt [...]
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-76', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Kappa step in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">step_angles_deg</tt><tt class="py-op">[</tt><tt [...]
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-77', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Phi step in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">step_angles_deg</tt><tt class="py-op">[</tt><tt c [...]
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line">
</tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line">
</tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-name">zero_correction_soft_step</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-number">512</tt><tt class="py-op">:</tt><tt class="py-number">532</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt cla [...]
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-name">zero_correction_soft_deg</tt> <tt class="py-op">=</tt> <tt class="py-name">zero_correction_soft_step</tt> <tt class="py-op">*</tt> <tt class="py-name">step_angles_deg</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-78', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Omega zero corr. in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">zero_correction_soft_deg</tt><tt class="p [...]
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-79', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Theta zero corr. in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">zero_correction_soft_deg</tt><tt class="p [...]
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-80', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Kappa zero corr. in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">zero_correction_soft_deg</tt><tt class="p [...]
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-81" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-81', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Phi zero corr. in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">zero_correction_soft_deg</tt><tt class="py- [...]
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-comment"># Beam rotation about e2,e3</tt>
</tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-82', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Beam rot in deg (e2)'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class= [...]
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-83', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Beam rot in deg (e3)'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class= [...]
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-comment"># Wavelenghts alpha1, alpha2, beta</tt>
</tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-84', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Wavelength alpha1'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py [...]
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-85', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Wavelength alpha2'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py [...]
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-86', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Wavelength alpha'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py- [...]
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-87', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Wavelength beta'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-n [...]
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line">
</tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-comment"># Detector tilts around e1,e2,e3 in deg</tt>
</tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-88', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Detector tilt e1 in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt cla [...]
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-89', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Detector tilt e2 in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt cla [...]
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-90', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Detector tilt e3 in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt cla [...]
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line">
</tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line">
</tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-comment"># Beam center</tt>
</tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-91" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-91', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Beam center x'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-nam [...]
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-92', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Beam center y'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-nam [...]
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-comment"># Angle (alpha) between kappa rotation axis and e3 (ideally 50 deg)</tt>
</tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-93', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Alpha angle in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="p [...]
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-comment"># Angle (beta) between phi rotation axis and e3 (ideally 0 deg)</tt>
</tt>
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-94" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-94', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Beta angle in deg'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py [...]
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line">
</tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-comment"># Detector distance</tt>
</tt>
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-95', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Distance in mm'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-na [...]
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-comment"># Statistics section (NS) 512 bytes long</tt>
</tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-96', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-97" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-97', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Statistic Section in Byte'</tt><tt class="py-op">]</tt><tt class="py-op [...]
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-98" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-98', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Stat: Min '</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name"> [...]
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-99" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-99', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Stat: Max '</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name"> [...]
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-100', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Stat: Average '</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py- [...]
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-101" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-101', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Stat: Stddev '</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-n [...]
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-102" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-102', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Stat: Skewness '</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py [...]
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line">
</tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-comment"># History section (NH) 2048 bytes long</tt>
</tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-103', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-104" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-104', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'History Section in Byte'</tt><tt class="py-op">]</tt><tt class="py-o [...]
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-105" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-105', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Flood field image'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">[</tt><tt class=" [...]
-</div><a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line">
</tt>
-<a name="OXDimage.read"></a><div id="OXDimage.read-def"><a name="L184"></a><tt class="py-lineno">184</tt> <a class="py-toggle" href="#" id="OXDimage.read-toggle" onclick="return toggle('OXDimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.OXDimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py- [...]
-</div><div id="OXDimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="OXDimage.read-expanded"><a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and
</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data
</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-106" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-106', 'header', 'link-13');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-107" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-107', 'resetvals', 'link-107');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-108" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-108', '_open', 'link-108');">_open</a></tt><tt class="py-op">(</tt><tt [...]
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-109" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._r [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-109', '_readheader', 'link-109');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line">
</tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-110" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-110', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Header Size In Bytes'</tt><tt [...]
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line">
</tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-comment"># Compute image size</tt>
</tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-111" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-111', 'dim1', 'link-111');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name"> [...]
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-113" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-113', 'dim2', 'link-113');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name"> [...]
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Oxford file"</tt><tt class="py-op">,</tt> <tt id="link-115" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-115', 'str', 'link-115');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \
</tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-string">"is corrupt, cannot read it"</tt><tt class="py-op">)</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-comment">#</tt>
</tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-116', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Compression'</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'TY1'</tt><tt cla [...]
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-comment">#Compressed with the KM4CCD compression</tt>
</tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-name">raw8</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-117" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-117', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-118" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-118', 'dim1', 'link-111');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-119" class="py-name"><a titl [...]
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-name">raw16</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-name">raw32</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-120" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-120', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'OI'</tt><tt class="py-op">]</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py- [...]
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-name">raw16</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-121" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-121', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-122" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-122', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'OI'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class= [...]
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-123" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-123', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'OL'</tt><tt class="py-op">]</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py- [...]
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-name">raw32</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-124', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-125" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-125', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'OL'</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class= [...]
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-comment">#DEBUG stuff ... </tt>
</tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">raw8</tt> <tt class="py-op">=</tt> <tt class="py-name">raw8</tt> </tt>
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">raw16</tt> <tt class="py-op">=</tt> <tt class="py-name">raw16</tt> </tt>
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">raw32</tt> <tt class="py-op">=</tt> <tt class="py-name">raw32</tt> </tt>
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-comment">#END DEBUG</tt>
</tt>
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt id="link-126" class="py-name"><a title="fabio.compression.decTY1" class="py-name" href="#" onclick="return doclink('link-126', 'decTY1', 'link-5');">decTY1</a></tt><tt class="py-op">(</tt><tt class="py-name">raw8</tt><tt class="py-op">,</tt> <tt class="py-name">raw16</tt><tt class="py-op">,</tt> <tt class="py-name">raw32</tt><tt class="py-op">)</t [...]
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt id="link-127" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-127', 'bytecode', 'link-127');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt> </tt>
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line">
</tt>
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt id="link-128" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-128', 'bytecode', 'link-127');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt> </tt>
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-129" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-129', 'bpp', 'link-129');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-130" class="py-name" targets="Method fabio.file_series.file_seri [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-132', 'tostring', 'link-132');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-name">ReadBytes</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-133" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-133', 'dim1', 'link-111');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-134" class="py-name"><a title="fab [...]
-<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-136" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-136', 'read', 'link-35');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">ReadBytes</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt id="link-137" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-137', 'bytecode', 'link-127');">bytecode</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line">
</tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt id="link-138" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-138', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'OVER_SHORT2: %s'</tt><tt class="py-op">,</tt> <tt class="py-name">block</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt id="link-139" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-139', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"%s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">block</tt> <tt class="py-op"><</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">sum</tt><tt class="py-op">(</tt><tt class="py-op">)</tt>< [...]
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt id="link-140" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-140', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"BYTECODE: %s"</tt><tt class="py-op">,</tt> <tt id="link-141" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-141', 'bytecode', 'link-127');">bytecode</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-142" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-142', 'data', 'link-142');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-143" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-143', 'dim2', 'link-113' [...]
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-145" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-145', 'bytecode', 'link-127');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-146" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-146', 'data', 'link-142');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> </tt>
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line">
</tt>
-<a name="OXDimage._writeheader"></a><div id="OXDimage._writeheader-def"><a name="L236"></a><tt class="py-lineno">236</tt> <a class="py-toggle" href="#" id="OXDimage._writeheader-toggle" onclick="return toggle('OXDimage._writeheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.OXDimage-class.html#_writeheader">_writeheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt [...]
-</div><div id="OXDimage._writeheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="OXDimage._writeheader-expanded"><a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"><tt class="py-docstring"> @return a string containing the header for Oxford images
</tt> </tt>
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-name">linesep</tt> <tt class="py-op">=</tt> <tt class="py-string">"\r\n"</tt> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-147" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-147', 'key', 'link-147');">key</a></tt> <tt class="py-keyword">in</tt> <tt id="link-148" class="py-name"><a title="fabio.OXDimage.DEFAULT_HEADERS" class="py-name" href="#" onclick="return [...]
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-149" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-149', 'key', 'link-147');">key</a></tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-150" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimag [...]
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-151" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-151', 'header_keys', 'link-150');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-152" class="py-name"><a title="fabio.fabioutils.key" class="py-name" [...]
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-153" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-153', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt id="link-154" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-154', 'key', 'link-147');">key</ [...]
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line">
</tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"NX"</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-157" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-157', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt cl [...]
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-159" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-159', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NX'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="lin [...]
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-161" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-161', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NY'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="lin [...]
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-name">ascii_headers</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-163" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-163', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Header Version'</tt><tt class="py-op">]</tt><tt cl [...]
</tt>
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-string">"COMPRESSION=%s (%5.1f)"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-164" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-164', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"Compression"</tt><tt c [...]
</tt>
-<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt class="py-string">"NX=%4i NY=%4i OI=%7i OL=%7i "</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-166" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-166', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"NX"</tt><tt clas [...]
</tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-string">"NHEADER=%7i NG=%7i NS=%7i NK=%7i NS=%7i NH=%7i"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-170" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-170', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string" [...]
</tt>
-<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-171" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-171', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'General Section size in Byte'</tt><tt class="py-op">]</tt><tt cla [...]
</tt>
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-172" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-172', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Special Section size in Byte'</tt><tt class="py-op">]</tt><tt cla [...]
</tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-173" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-173', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'KM4 Section size in Byte'</tt><tt class="py-op">]</tt><tt class=" [...]
</tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-174" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-174', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Statistic Section in Byte'</tt><tt class="py-op">]</tt><tt class= [...]
</tt>
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-175" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-175', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'History Section in Byte'</tt><tt class="py-op">]</tt><tt class="p [...]
</tt>
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-string">"NSUPPLEMENT=%7i"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-176" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-176', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"NSUPPLEMENT"</tt><tt class=" [...]
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"Time"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-177" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-177', 'header', 'link-13');">header</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-name">ascii_headers</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"TIME=%s"</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-178" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-178', 'header', 'link-13');">header</a></tt><t [...]
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line">
</tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-name">ascii_headers</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"TIME=%s"</tt> <tt class="py-op">%</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">ctime</tt><tt class="py-op">)</tt> </tt>
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line">
</tt>
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt id="link-179" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-179', 'header', 'link-13');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">linesep</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">ascii_headers</tt><tt class="py-op">)</tt><tt class="py-op" [...]
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line">
</tt>
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line">
</tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-name">NG</tt> <tt class="py-op">=</tt> <tt id="link-180" class="py-name" targets="Class fabio.OXDimage.Section=fabio.OXDimage.Section-class.html"><a title="fabio.OXDimage.Section" class="py-name" href="#" onclick="return doclink('link-180', 'Section', 'link-180');">Section</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-181" class="py-name"><a tit [...]
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-name">NG</tt><tt class="py-op">.</tt><tt id="link-183" class="py-name" targets="Method fabio.OXDimage.Section.setData()=fabio.OXDimage.Section-class.html#setData,Method fabio.edfimage.Frame.setData()=fabio.edfimage.Frame-class.html#setData,Method fabio.edfimage.edfimage.setData()=fabio.edfimage.edfimage-class.html#setData"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-183', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Binning in x'</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt class="py-name">NG</tt><tt class="py-op">.</tt><tt id="link-184" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-184', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Binning in y'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-name">NG</tt><tt class="py-op">.</tt><tt id="link-185" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-185', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Detector size x'</tt><tt class="py-op">,</tt> <tt class="py-number">22</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-name">NG</tt><tt class="py-op">.</tt><tt id="link-186" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-186', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Detector size y'</tt><tt class="py-op">,</tt> <tt class="py-number">24</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-name">NG</tt><tt class="py-op">.</tt><tt id="link-187" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-187', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Pixels in x'</tt><tt class="py-op">,</tt> <tt class="py-number">26</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-name">NG</tt><tt class="py-op">.</tt><tt id="link-188" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-188', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Pixels in y'</tt><tt class="py-op">,</tt> <tt class="py-number">28</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt class="py-name">NG</tt><tt class="py-op">.</tt><tt id="link-189" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-189', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'No of pixels'</tt><tt class="py-op">,</tt> <tt class="py-number">36</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">)</tt> </tt>
-<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt id="link-190" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-190', 'header', 'link-13');">header</a></tt> <tt class="py-op">+=</tt> <tt class="py-name">NG</tt><tt class="py-op">.</tt><tt id="link-191" class="py-name" targets="Method fabio.OXDimage.Section.__repr__()=fabio.OXDimage.Section-class.html#__repr__"><a title="fabio.OXDimage.Section [...]
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line">
</tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-name">NS</tt> <tt class="py-op">=</tt> <tt id="link-192" class="py-name"><a title="fabio.OXDimage.Section" class="py-name" href="#" onclick="return doclink('link-192', 'Section', 'link-180');">Section</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-193" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="ret [...]
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-195', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Gain'</tt><tt class="py-op">,</tt> <tt class="py-number">56</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float</tt><tt class="py-op">)</tt> </tt>
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-196" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-196', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Overflows flag'</tt><tt class="py-op">,</tt> <tt class="py-number">464</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">)</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-197" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-197', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Overflow after remeasure flag'</tt><tt class="py-op">,</tt> <tt class="py-number">466</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">)</tt> </tt>
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-198" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-198', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Overflow threshold'</tt><tt class="py-op">,</tt> <tt class="py-number">472</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">)</tt> </tt>
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-199" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-199', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Exposure time in sec'</tt><tt class="py-op">,</tt> <tt class="py-number">480</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float</tt><tt class="py-op">)</tt> </tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-200" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-200', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Overflow time in sec'</tt><tt class="py-op">,</tt> <tt class="py-number">488</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float</tt><tt class="py-op">)</tt> </tt>
-<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-201" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-201', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Monitor counts of raw image 1'</tt><tt class="py-op">,</tt> <tt class="py-number">528</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">)</tt> </tt>
-<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-202" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-202', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Monitor counts of raw image 2'</tt><tt class="py-op">,</tt> <tt class="py-number">532</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">)</tt> </tt>
-<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-203" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-203', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Monitor counts of overflow raw image 1'</tt><tt class="py-op">,</tt> <tt class="py-number">536</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">)</tt> </tt>
-<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-204" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-204', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Monitor counts of overflow raw image 2'</tt><tt class="py-op">,</tt> <tt class="py-number">540</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">)</tt> </tt>
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-205" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-205', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Unwarping'</tt><tt class="py-op">,</tt> <tt class="py-number">544</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">)</tt> </tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'Detector type'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-206" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-206', 'header', 'link-13');">header</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-207" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-207', 'key', 'link-147');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">value</tt> <tt class="py-keyword">in</tt> <tt id="link-208" class="py-name"><a title="fabio.OXDimage.DETECTOR_TYPES" class="py-name" href="#" onclick="return doclink('link [...]
-<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">value</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-209" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-209', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Detector type'</tt><tt class="py-op">]</tt [...]
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-210" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-210', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">548</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">default</tt><tt class="py-op">=</tt><tt id="link-211" class="py-name"><a title="fabio.fabioutil [...]
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-212" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-212', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Real pixel size x (mm)'</tt><tt class="py-op">,</tt> <tt class="py-number">568</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float</tt><tt class="py-op">)</tt> </tt>
-<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-213" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-213', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Real pixel size y (mm)'</tt><tt class="py-op">,</tt> <tt class="py-number">576</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float</tt><tt class="py-op">)</tt> </tt>
-<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt id="link-214" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-214', 'header', 'link-13');">header</a></tt> <tt class="py-op">+=</tt> <tt class="py-name">NS</tt><tt class="py-op">.</tt><tt id="link-215" class="py-name"><a title="fabio.OXDimage.Section.__repr__" class="py-name" href="#" onclick="return doclink('link-215', '__repr__', 'link-191' [...]
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line">
</tt>
-<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt class="py-name">KM</tt> <tt class="py-op">=</tt> <tt id="link-216" class="py-name"><a title="fabio.OXDimage.Section" class="py-name" href="#" onclick="return doclink('link-216', 'Section', 'link-180');">Section</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-217" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="ret [...]
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-219" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-219', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Spatial correction file date'</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"|S26"</tt><tt class="py-op">)</tt> </tt>
-<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-220" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-220', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Spatial correction file'</tt><tt class="py-op">,</tt> <tt class="py-number">26</tt><tt class="py-op">,</tt> <tt class="py-string">"|S246"</tt><tt class="py-op">)</tt> </tt>
-<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-comment"># Angles are in steps due to stepper motors - conversion factor RAD</tt>
</tt>
-<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> <tt class="py-comment"># angle[0] = omega, angle[1] = theta, angle[2] = kappa, angle[3] = phi,</tt>
</tt>
-<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-221" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-221', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Omega step in deg'</tt><tt class="py-op">,</tt> <tt cla [...]
-<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-222" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-222', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">368</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">,</tt> <tt id="link-223" class="py-name"><a title="fabio.OXDimage.deg2rad" class="py-name" href="#" onclick="return docl [...]
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-225" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-225', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Omega start in deg'</tt><tt class="py-op">,</tt> <t [...]
-<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-226" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-226', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">284</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-227" class="py-name"><a title="fabio.edfimage.edf [...]
-<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-229" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-229', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Omega end in deg'</tt><tt class="py-op">,</tt> <tt [...]
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-230" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-230', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">324</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-231" class="py-name"><a title="fabio.edfimage.edf [...]
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-233" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-233', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Omega zero corr. in deg'</tt><tt class="py-op">,</t [...]
-<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-234" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-234', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">512</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-235" class="py-name"><a title="fabio.edfimage.edf [...]
-<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line">
</tt>
-<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-237" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-237', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Theta step in deg'</tt><tt class="py-op">,</tt> <tt cla [...]
-<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-238" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-238', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">368</tt> <tt class="py-op">+</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">,</tt> <tt id="link-239" class="py-name"><a title="fabio.OXDimage. [...]
-<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-241" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-241', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Theta start in deg'</tt><tt class="py-op">,</tt> <t [...]
-<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-242" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-242', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">284</tt> <tt class="py-op">+</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id=" [...]
-<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-245" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-245', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Theta end in deg'</tt><tt class="py-op">,</tt> <tt [...]
-<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-246" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-246', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">324</tt> <tt class="py-op">+</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id=" [...]
-<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-249" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-249', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Theta zero corr. in deg'</tt><tt class="py-op">,</t [...]
-<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-250" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-250', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">512</tt> <tt class="py-op">+</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id=" [...]
-<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line">
</tt>
-<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-253" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-253', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Kappa step in deg'</tt><tt class="py-op">,</tt> <tt cla [...]
-<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-254" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-254', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">368</tt> <tt class="py-op">+</tt> <tt class="py-number">16</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">,</tt> <tt id="link-255" class="py-name"><a title="fabio.OXDimage [...]
-<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-257" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-257', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Kappa start in deg'</tt><tt class="py-op">,</tt> <t [...]
-<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-258" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-258', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">284</tt> <tt class="py-op">+</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id=" [...]
-<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-261" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-261', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Kappa end in deg'</tt><tt class="py-op">,</tt> <tt [...]
-<a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-262" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-262', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">324</tt> <tt class="py-op">+</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id=" [...]
-<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-265" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-265', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Kappa zero corr. in deg'</tt><tt class="py-op">,</t [...]
-<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-266" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-266', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">512</tt> <tt class="py-op">+</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id=" [...]
-<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line">
</tt>
-<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-269" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-269', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Phi step in deg'</tt><tt class="py-op">,</tt> <tt class [...]
-<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-270" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-270', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">368</tt> <tt class="py-op">+</tt> <tt class="py-number">24</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">,</tt> <tt id="link-271" class="py-name"><a title="fabio.OXDimage [...]
-<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-273" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-273', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Phi start in deg'</tt><tt class="py-op">,</tt> <tt [...]
-<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-274" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-274', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">284</tt> <tt class="py-op">+</tt> <tt class="py-number">12</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id= [...]
-<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-277" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-277', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Phi end in deg'</tt><tt class="py-op">,</tt> <tt cl [...]
-<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-278" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-278', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">324</tt> <tt class="py-op">+</tt> <tt class="py-number">12</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id= [...]
-<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-281" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-281', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Phi zero corr. in deg'</tt><tt class="py-op">,</tt> [...]
-<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-282" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-282', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">512</tt> <tt class="py-op">+</tt> <tt class="py-number">12</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id= [...]
-<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line">
</tt>
-<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> <tt class="py-comment"># Beam rotation about e2,e3</tt>
</tt>
-<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-285" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-285', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Beam rot in deg (e2)'</tt><tt class="py-op">,</tt> <tt class="py-number">552</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-286" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-286', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Beam rot in deg (e3)'</tt><tt class="py-op">,</tt> <tt class="py-number">560</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> <tt class="py-comment"># Wavelenghts alpha1, alpha2, beta</tt>
</tt>
-<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-287" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-287', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Wavelength alpha1'</tt><tt class="py-op">,</tt> <tt class="py-number">568</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-288" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-288', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Wavelength alpha2'</tt><tt class="py-op">,</tt> <tt class="py-number">576</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-289" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-289', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Wavelength alpha'</tt><tt class="py-op">,</tt> <tt class="py-number">584</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-290" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-290', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Wavelength beta'</tt><tt class="py-op">,</tt> <tt class="py-number">592</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line">
</tt>
-<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"> <tt class="py-comment"># Detector tilts around e1,e2,e3 in deg</tt>
</tt>
-<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-291" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-291', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Detector tilt e1 in deg'</tt><tt class="py-op">,</tt> <tt class="py-number">640</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-292" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-292', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Detector tilt e2 in deg'</tt><tt class="py-op">,</tt> <tt class="py-number">648</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-293" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-293', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Detector tilt e3 in deg'</tt><tt class="py-op">,</tt> <tt class="py-number">656</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line">
</tt>
-<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"> <tt class="py-comment"># Beam center</tt>
</tt>
-<a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-294" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-294', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Beam center x'</tt><tt class="py-op">,</tt> <tt class="py-number">664</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-295" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-295', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Beam center y'</tt><tt class="py-op">,</tt> <tt class="py-number">672</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"> <tt class="py-comment"># Angle (alpha) between kappa rotation axis and e3 (ideally 50 deg)</tt>
</tt>
-<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-296" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-296', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Alpha angle in deg'</tt><tt class="py-op">,</tt> <tt class="py-number">672</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"> <tt class="py-comment"># Angle (beta) between phi rotation axis and e3 (ideally 0 deg)</tt>
</tt>
-<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-297" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-297', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Beta angle in deg'</tt><tt class="py-op">,</tt> <tt class="py-number">672</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line">
</tt>
-<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"> <tt class="py-comment"># Detector distance</tt>
</tt>
-<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-298" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-298', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Distance in mm'</tt><tt class="py-op">,</tt> <tt class="py-number">712</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"> <tt id="link-299" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-299', 'header', 'link-13');">header</a></tt> <tt class="py-op">+=</tt> <tt class="py-name">KM</tt><tt class="py-op">.</tt><tt id="link-300" class="py-name"><a title="fabio.OXDimage.Section.__repr__" class="py-name" href="#" onclick="return doclink('link-300', '__repr__', 'link-191' [...]
-<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line">
</tt>
-<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> <tt class="py-name">SS</tt> <tt class="py-op">=</tt> <tt id="link-301" class="py-name"><a title="fabio.OXDimage.Section" class="py-name" href="#" onclick="return doclink('link-301', 'Section', 'link-180');">Section</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-302" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="ret [...]
-<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"> <tt class="py-name">SS</tt><tt class="py-op">.</tt><tt id="link-304" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-304', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Stat: Min '</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">)</tt> </tt>
-<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"> <tt class="py-name">SS</tt><tt class="py-op">.</tt><tt id="link-305" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-305', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Stat: Max '</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">)</tt> </tt>
-<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"> <tt class="py-name">SS</tt><tt class="py-op">.</tt><tt id="link-306" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-306', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Stat: Average '</tt><tt class="py-op">,</tt> <tt class="py-number">24</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-307" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-307', 'header', 'link-13');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'Stat: Stddev '</tt><tt class="py-op">,</tt> <tt class=" [...]
-<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> <tt class="py-name">SS</tt><tt class="py-op">.</tt><tt id="link-308" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-308', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">32</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-309" class="py-name"><a title="fabio.edfimage.ed [...]
-<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"> <tt class="py-name">SS</tt><tt class="py-op">.</tt><tt id="link-310" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-310', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Stat: Skewness '</tt><tt class="py-op">,</tt> <tt class="py-number">40</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">)</tt> </tt>
-<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt id="link-311" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-311', 'header', 'link-13');">header</a></tt> <tt class="py-op">+=</tt> <tt class="py-name">SS</tt><tt class="py-op">.</tt><tt id="link-312" class="py-name"><a title="fabio.OXDimage.Section.__repr__" class="py-name" href="#" onclick="return doclink('link-312', '__repr__', 'link-191' [...]
-<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line">
</tt>
-<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> <tt class="py-name">HS</tt> <tt class="py-op">=</tt> <tt id="link-313" class="py-name"><a title="fabio.OXDimage.Section" class="py-name" href="#" onclick="return doclink('link-313', 'Section', 'link-180');">Section</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-314" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="ret [...]
-<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> <tt class="py-name">HS</tt><tt class="py-op">.</tt><tt id="link-316" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-316', 'setData', 'link-183');">setData</a></tt><tt class="py-op">(</tt><tt class="py-string">'Flood field image'</tt><tt class="py-op">,</tt> <tt class="py-number">99</tt><tt class="py-op">,</tt> <tt class="py-string">"|S27"</tt><tt class="py-op">)</tt> </tt>
-<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt id="link-317" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-317', 'header', 'link-13');">header</a></tt> <tt class="py-op">+=</tt> <tt class="py-name">HS</tt><tt class="py-op">.</tt><tt id="link-318" class="py-name"><a title="fabio.OXDimage.Section.__repr__" class="py-name" href="#" onclick="return doclink('link-318', '__repr__', 'link-191' [...]
-<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line">
</tt>
-<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-319" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-319', 'header', 'link-13');">header</a></tt> </tt>
-</div><a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line">
</tt>
-<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line">
</tt>
-<a name="OXDimage.write"></a><div id="OXDimage.write-def"><a name="L381"></a><tt class="py-lineno">381</tt> <a class="py-toggle" href="#" id="OXDimage.write-toggle" onclick="return toggle('OXDimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.OXDimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">)</tt><tt class [...]
-</div><div id="OXDimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="OXDimage.write-expanded"><a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> <tt class="py-docstring">"""Write Oxford diffraction images: this is still beta
</tt> </tt>
-<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"><tt class="py-docstring"> @param fname: output filename
</tt> </tt>
-<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt class="py-name">datablock8</tt><tt class="py-op">,</tt> <tt class="py-name">datablock16</tt><tt class="py-op">,</tt> <tt class="py-name">datablock32</tt> <tt class="py-op">=</tt> <tt id="link-320" class="py-name"><a title="fabio.compression.compTY1" class="py-name" href="#" onclick="return doclink('link-320', 'compTY1', 'link-6');">compTY1</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt cl [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-321', 'data', 'link-142');">data</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-322" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-322', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"OI"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-323" class="py-name"><a title="fabio.file_series.file_series.len" c [...]
-<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-324" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-324', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"OL"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-325" class="py-name"><a title="fabio.file_series.file_series.len" c [...]
-<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"> <tt class="py-keyword">with</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-326" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-326', '_open', 'link-108');">_open</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-stri [...]
-<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-327" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryi [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-327', 'write', 'link-327');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-328" class="py-name" targets="Method fabio.OXDimage.OXDimage._writeheader()=fabio.OXDimage.OXDimage-class.html#_writeheader,Method fabio.mar345image.mar345image._writeheader()=fabio.mar345image.mar345image-class.html#_writeheader"><a title="fabio.OXDimage.OXDimage._writeheader
-fabio.mar345image.mar345image._writeheader" class="py-name" href="#" onclick="return doclink('link-328', '_writeheader', 'link-328');">_writeheader</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-329" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-329', 'write', 'link-327');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">datablock8</tt><tt class="py-op">)</tt> </tt>
-<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-330" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-330', 'write', 'link-327');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">datablock16</tt><tt class="py-op">)</tt> </tt>
-<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-331" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-331', 'write', 'link-327');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">datablock32</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line">
</tt>
-<a name="OXDimage.getCompressionRatio"></a><div id="OXDimage.getCompressionRatio-def"><a name="L394"></a><tt class="py-lineno">394</tt> <a class="py-toggle" href="#" id="OXDimage.getCompressionRatio-toggle" onclick="return toggle('OXDimage.getCompressionRatio');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.OXDimage-class.html#getCompressionRatio">getCompressionRatio</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt c [...]
-</div><div id="OXDimage.getCompressionRatio-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="OXDimage.getCompressionRatio-expanded"><a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> <tt class="py-docstring">"calculate the compression factor obtained vs raw data"</tt> </tt>
-<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">100.0</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-332" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-332', 'data', 'link-142');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">+</tt> <tt class="py-number">2</tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-333" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-333', 'header', 'link-13');">header</a></tt><tt c [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-335', 'data', 'link-142');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line">
</tt>
-<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="OXDimage.checkData"></a><div id="OXDimage.checkData-def"><a name="L399"></a><tt class="py-lineno">399</tt> <a class="py-toggle" href="#" id="OXDimage.checkData-toggle" onclick="return toggle('OXDimage.checkData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.OXDimage-class.html#checkData">checkData</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="p [...]
-</div><div id="OXDimage.checkData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="OXDimage.checkData-expanded"><a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-336" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-336', 'data', 'link-142');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-337" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-337', 'data', 'link-142');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line">
</tt>
-<a name="Section"></a><div id="Section-def"><a name="L405"></a><tt class="py-lineno">405</tt> <a class="py-toggle" href="#" id="Section-toggle" onclick="return toggle('Section');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.OXDimage.Section-class.html">Section</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="Section-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Section-expanded"><a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"><tt class="py-docstring"> Small helper class for writing binary headers
</tt> </tt>
-<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="Section.__init__"></a><div id="Section.__init__-def"><a name="L409"></a><tt class="py-lineno">409</tt> <a class="py-toggle" href="#" id="Section.__init__-toggle" onclick="return toggle('Section.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.Section-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">size</tt><tt class="py-op">,</ [...]
-</div><div id="Section.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Section.__init__-expanded"><a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line"><tt class="py-docstring"> @param size: size of the header section in bytes
</tt> </tt>
-<a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"><tt class="py-docstring"> @param dictHeader: headers of the image
</tt> </tt>
-<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L414"></a><tt class="py-lineno">414</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">size</tt> </tt>
-<a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-338" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-338', 'header', 'link-13');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">dictHeader</tt> </tt>
-<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lstChr</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"\x00"</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">size</tt> </tt>
-<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dictSize</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-</div><a name="Section.__repr__"></a><div id="Section.__repr__-def"><a name="L418"></a><tt class="py-lineno">418</tt> <a class="py-toggle" href="#" id="Section.__repr__-toggle" onclick="return toggle('Section.__repr__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.Section-class.html#__repr__">__repr__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="Section.__repr__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Section.__repr__-expanded"><a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-string">""</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lstChr</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line">
</tt>
-<a name="Section.getSize"></a><div id="Section.getSize-def"><a name="L421"></a><tt class="py-lineno">421</tt> <a class="py-toggle" href="#" id="Section.getSize-toggle" onclick="return toggle('Section.getSize');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.Section-class.html#getSize">getSize</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">dtype</tt><tt class="py-op">)</tt><t [...]
-</div><div id="Section.getSize-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Section.getSize-expanded"><a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">dtype</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dictSize</tt><tt class="py-op">:</tt> </tt>
-<a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dictSize</tt><tt class="py-op">[</tt><tt class="py-name">dtype</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-339" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-339', 'len', 'link-130');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">n [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-340', 'tostring', 'link-132');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_dictSize</tt><tt class="py-op">[</tt><tt class="py-name">dtype</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line">
</tt>
-<a name="Section.setData"></a><div id="Section.setData-def"><a name="L426"></a><tt class="py-lineno">426</tt> <a class="py-toggle" href="#" id="Section.setData-toggle" onclick="return toggle('Section.setData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.OXDimage.Section-class.html#setData">setData</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">key</tt><tt class="py-op">,</tt> <tt [...]
-</div><div id="Section.setData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Section.setData-expanded"><a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"> <tt class="py-docstring">"""
</tt> </tt>
-<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"><tt class="py-docstring"> @param offset: int, starting position in the section
</tt> </tt>
-<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"><tt class="py-docstring"> @param key: name of the header key
</tt> </tt>
-<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"><tt class="py-docstring"> @param dtype: type of the data to insert (defines the size!)
</tt> </tt>
-<a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-341" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-341', 'key', 'link-147');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-342" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-342', [...]
-<a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-343" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-343', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt id="link-344" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="r [...]
-<a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-345" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-345', 'key', 'link-147');">key</a></tt> <tt class="py-keyword">in</tt> <tt id="link-346" class="py-name"><a title="fabio.OXDimage.DEFAULT_HEADERS" class="py-name" href="#" onclick="return doclink('link-346', 'DEFAULT_HEADERS', 'link-12');">DEFAULT_HEADERS</a> [...]
-<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt id="link-347" class="py-name"><a title="fabio.OXDimage.DEFAULT_HEADERS" class="py-name" href="#" onclick="return doclink('link-347', 'DEFAULT_HEADERS', 'link-12');">DEFAULT_HEADERS</a></tt><tt class="py-op">[</tt><tt id="link-348" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-348', 'key', 'l [...]
-<a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt class="py-name">default</tt> </tt>
-<a name="L438"></a><tt class="py-lineno">438</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">value</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt class="py-string">"\x00"</tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-349" class="py-name" targets="Method fabio.OXDimage.Section.getSize()=fabio.OXDimage.Section-class.html#getSize"><a title="fabio.OXDimage.Section.getSize" class="py-name" href="#" onclick="return doclink('link-349', 'getSize', ' [...]
-<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-name">value</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-350" class="py-name"> [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-350', 'tostring', 'link-132');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lstChr</tt><tt class="py-op">[</tt><tt class="py-name">offset</tt><tt class="py-op">:</tt><tt class="py-name">offset</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-351" class="py-name"><a title="fabio.OXDimage.Section.getSize" class="py-name" href="#" onclick="return doclink('link-351', 'ge [...]
-</div></div><a name="L443"></a><tt class="py-lineno">443</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.OXDimage.OXDimage-class.html b/doc/html/fabio.OXDimage.OXDimage-class.html
deleted file mode 100644
index f181eba..0000000
--- a/doc/html/fabio.OXDimage.OXDimage-class.html
+++ /dev/null
@@ -1,490 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.OXDimage.OXDimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
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-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.OXDimage-module.html">Module OXDimage</a> ::
- Class OXDimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.OXDimage.OXDimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class OXDimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">OXDimage</strong>
-</pre>
-
-<hr />
-<p>Oxford Diffraction Sapphire 3 images reader/writer class</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.OXDimage.OXDimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Must be overridden in classes</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.OXDimage.OXDimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_writeheader"></a><span class="summary-sig-name">_writeheader</span>(<span class="summary-sig-arg">self</span>)</span><br />
- @return a string containing the header for Oxford images</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage._writeheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.OXDimage.OXDimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- Write Oxford diffraction images: this is still beta</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getCompressionRatio"></a><span class="summary-sig-name">getCompressionRatio</span>(<span class="summary-sig-arg">self</span>)</span><br />
- calculate the compression factor obtained vs raw data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage.getCompressionRatio">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.OXDimage.OXDimage-class.html#checkData" class="summary-sig-name">checkData</a>(<span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage.checkData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Must be overridden in classes</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Read in header into self.header and
- the data into self.data
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>Write Oxford diffraction images: this is still beta</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>fname</code></strong> - output filename</li>
- </ul></dd>
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="checkData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">checkData</span>(<span class="sig-arg">data</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.OXDimage-pysrc.html#OXDimage.checkData">source code</a></span>
- </td>
- </tr></table>
-
- <p>Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#checkData">fabioimage.fabioimage.checkData</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.OXDimage.Section-class.html b/doc/html/fabio.OXDimage.Section-class.html
deleted file mode 100644
index 27d166a..0000000
--- a/doc/html/fabio.OXDimage.Section-class.html
+++ /dev/null
@@ -1,350 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.OXDimage.Section</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.OXDimage-module.html">Module OXDimage</a> ::
- Class Section
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.OXDimage.Section-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class Section</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.OXDimage-pysrc.html#Section">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <strong class="uidshort">Section</strong>
-</pre>
-
-<hr />
-<p>Small helper class for writing binary headers</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.OXDimage.Section-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">size</span>,
- <span class="summary-sig-arg">dictHeader</span>)</span><br />
- x.__init__(...) initializes x; see x.__class__.__doc__ for signature</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#Section.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.OXDimage.Section-class.html#__repr__" class="summary-sig-name">__repr__</a>(<span class="summary-sig-arg">self</span>)</span><br />
- repr(x)</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#Section.__repr__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getSize"></a><span class="summary-sig-name">getSize</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">dtype</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#Section.getSize">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.OXDimage.Section-class.html#setData" class="summary-sig-name">setData</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">key</span>,
- <span class="summary-sig-arg">offset</span>,
- <span class="summary-sig-arg">dtype</span>,
- <span class="summary-sig-arg">default</span>=<span class="summary-sig-default">None</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.OXDimage-pysrc.html#Section.setData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
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- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
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-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">size</span>,
- <span class="sig-arg">dictHeader</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.OXDimage-pysrc.html#Section.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>x.__init__(...) initializes x; see x.__class__.__doc__ for
- signature</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>size</code></strong> - size of the header section in bytes</li>
- <li><strong class="pname"><code>dictHeader</code></strong> - headers of the image</li>
- </ul></dd>
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="__repr__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__repr__</span>(<span class="sig-arg">self</span>)</span>
- <br /><em class="fname">(Representation operator)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.OXDimage-pysrc.html#Section.__repr__">source code</a></span>
- </td>
- </tr></table>
-
- <p>repr(x)</p>
- <dl class="fields">
- <dt>Overrides:
- object.__repr__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="setData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">setData</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">key</span>,
- <span class="sig-arg">offset</span>,
- <span class="sig-arg">dtype</span>,
- <span class="sig-arg">default</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.OXDimage-pysrc.html#Section.setData">source code</a></span>
- </td>
- </tr></table>
-
-
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>offset</code></strong> - int, starting position in the section</li>
- <li><strong class="pname"><code>key</code></strong> - name of the header key</li>
- <li><strong class="pname"><code>dtype</code></strong> - type of the data to insert (defines the size!)</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
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-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.TiffIO-module.html b/doc/html/fabio.TiffIO-module.html
deleted file mode 100644
index c115885..0000000
--- a/doc/html/fabio.TiffIO-module.html
+++ /dev/null
@@ -1,454 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.TiffIO</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module TiffIO
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.TiffIO-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module TiffIO</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.TiffIO-pysrc.html">source code</a></span></p>
-<hr />
-<div class="fields"> <p><strong>Author:</strong>
- V.A. Sole - ESRF Data Analysis
- </p>
-</div><!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.TiffIO.TiffIO-class.html" class="summary-name">TiffIO</a>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__revision__"></a><span class="summary-name">__revision__</span> = <code title="1501">1501</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="DEBUG"></a><span class="summary-name">DEBUG</span> = <code title="0">0</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="ALLOW_MULTIPLE_STRIPS"></a><span class="summary-name">ALLOW_MULTIPLE_STRIPS</span> = <code title="False">False</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.TiffIO-module.html#TAG_ID" class="summary-name">TAG_ID</a> = <code title="{256: 'NumberOfColumns',
- 257: 'NumberOfRows',
- 258: 'BitsPerSample',
- 259: 'Compression',
- 262: 'PhotometricInterpretation',
- 270: 'ImageDescription',
- 273: 'StripOffsets',
- 278: 'RowsPerStrip',
-..."><code class="variable-group">{</code>256<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">NumberOfColumns</code><code class="variable-quote">'</code><code class="variable-op">, </code>257<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">NumberOfRows</code><code class="variable-quote">'</code><code class="variable-op">, </code>258<code class="variable-op">: </code><code class="vari [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_NUMBER_OF_COLUMNS"></a><span class="summary-name">TAG_NUMBER_OF_COLUMNS</span> = <code title="256">256</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_NUMBER_OF_ROWS"></a><span class="summary-name">TAG_NUMBER_OF_ROWS</span> = <code title="257">257</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_BITS_PER_SAMPLE"></a><span class="summary-name">TAG_BITS_PER_SAMPLE</span> = <code title="258">258</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_PHOTOMETRIC_INTERPRETATION"></a><span class="summary-name">TAG_PHOTOMETRIC_INTERPRETATION</span> = <code title="262">262</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_COMPRESSION"></a><span class="summary-name">TAG_COMPRESSION</span> = <code title="259">259</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_IMAGE_DESCRIPTION"></a><span class="summary-name">TAG_IMAGE_DESCRIPTION</span> = <code title="270">270</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_STRIP_OFFSETS"></a><span class="summary-name">TAG_STRIP_OFFSETS</span> = <code title="273">273</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_ROWS_PER_STRIP"></a><span class="summary-name">TAG_ROWS_PER_STRIP</span> = <code title="278">278</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_STRIP_BYTE_COUNTS"></a><span class="summary-name">TAG_STRIP_BYTE_COUNTS</span> = <code title="279">279</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_SOFTWARE"></a><span class="summary-name">TAG_SOFTWARE</span> = <code title="305">305</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_DATE"></a><span class="summary-name">TAG_DATE</span> = <code title="306">306</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_COLORMAP"></a><span class="summary-name">TAG_COLORMAP</span> = <code title="320">320</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="TAG_SAMPLE_FORMAT"></a><span class="summary-name">TAG_SAMPLE_FORMAT</span> = <code title="339">339</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.TiffIO-module.html#FIELD_TYPE" class="summary-name">FIELD_TYPE</a> = <code title="{1: ('BYTE', 'B'),
- 2: ('ASCII', 's'),
- 3: ('SHORT', 'H'),
- 4: ('LONG', 'I'),
- 5: ('RATIONAL', 'II'),
- 6: ('SBYTE', 'b'),
- 7: ('UNDEFINED', 'B'),
- 8: ('SSHORT', 'h'),
-..."><code class="variable-group">{</code>1<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">BYTE</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">B</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">, </code>2<code class="variable-op">: </code><code c [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.TiffIO-module.html#FIELD_TYPE_OUT" class="summary-name">FIELD_TYPE_OUT</a> = <code title="{'B': 1,
- 'H': 3,
- 'I': 4,
- 'II': 5,
- 'b': 6,
- 'd': 12,
- 'f': 11,
- 'h': 8,
-..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">B</code><code class="variable-quote">'</code><code class="variable-op">: </code>1<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>3<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">I</code><code cla [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="SAMPLE_FORMAT_UINT"></a><span class="summary-name">SAMPLE_FORMAT_UINT</span> = <code title="1">1</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="SAMPLE_FORMAT_INT"></a><span class="summary-name">SAMPLE_FORMAT_INT</span> = <code title="2">2</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="SAMPLE_FORMAT_FLOAT"></a><span class="summary-name">SAMPLE_FORMAT_FLOAT</span> = <code title="3">3</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="SAMPLE_FORMAT_VOID"></a><span class="summary-name">SAMPLE_FORMAT_VOID</span> = <code title="4">4</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="SAMPLE_FORMAT_COMPLEXINT"></a><span class="summary-name">SAMPLE_FORMAT_COMPLEXINT</span> = <code title="5">5</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="SAMPLE_FORMAT_COMPLEXIEEEFP"></a><span class="summary-name">SAMPLE_FORMAT_COMPLEXIEEEFP</span> = <code title="6">6</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="TAG_ID"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">TAG_ID</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>256<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">NumberOfColumns</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 257<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">NumberOfRows</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 258<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">BitsPerSample</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 259<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Compression</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 262<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">PhotometricInterpretation</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 270<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ImageDescription</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 273<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">StripOffsets</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 278<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">RowsPerStrip</code><code class="variable-quote">'</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="FIELD_TYPE"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">FIELD_TYPE</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>1<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">BYTE</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">B</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- 2<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">ASCII</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">s</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- 3<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">SHORT</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- 4<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">LONG</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- 5<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">RATIONAL</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">II</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- 6<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">SBYTE</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">b</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- 7<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">UNDEFINED</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">B</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- 8<code class="variable-op">: </code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">SSHORT</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">h</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="FIELD_TYPE_OUT"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">FIELD_TYPE_OUT</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">B</code><code class="variable-quote">'</code><code class="variable-op">: </code>1<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">H</code><code class="variable-quote">'</code><code class="variable-op">: </code>3<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code>4<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">II</code><code class="variable-quote">'</code><code class="variable-op">: </code>5<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">b</code><code class="variable-quote">'</code><code class="variable-op">: </code>6<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">d</code><code class="variable-quote">'</code><code class="variable-op">: </code>12<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">f</code><code class="variable-quote">'</code><code class="variable-op">: </code>11<code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">h</code><code class="variable-quote">'</code><code class="variable-op">: </code>8<code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
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diff --git a/doc/html/fabio.TiffIO-pysrc.html b/doc/html/fabio.TiffIO-pysrc.html
deleted file mode 100644
index 8f11428..0000000
--- a/doc/html/fabio.TiffIO-pysrc.html
+++ /dev/null
@@ -1,1786 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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- <title>fabio.TiffIO</title>
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- <a href="fabio-module.html">Package fabio</a> ::
- Module TiffIO
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.TiffIO-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
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-<h1 class="epydoc">Source Code for <a href="fabio.TiffIO-module.html">Module fabio.TiffIO</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#/*##########################################################################</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"># Copyright (C) 2012 European Synchrotron Radiation Facility</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment">#</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-comment"># This file is part of the PyMca X-ray Fluorescence Toolkit developed at</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-comment"># the ESRF by the Software group.</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-comment">#</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-comment"># This file is free software; you can redistribute it and/or modify it </tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-comment"># under the terms of the GNU Lesser General Public License as published by the Free</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-comment"># Software Foundation; either version 2 of the License, or (at your option) </tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-comment"># any later version.</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-comment">#</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-comment"># PyMca is distributed in the hope that it will be useful, but WITHOUT ANY</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-comment"># WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-comment"># FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-comment"># details.</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-comment">#</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-comment">#############################################################################*/</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-name">__author__</tt> <tt class="py-op">=</tt> <tt class="py-docstring">"V.A. Sole - ESRF Data Analysis"</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.TiffIO.__revision__=fabio.TiffIO-module.html#__revision__"><a title="fabio.TiffIO.__revision__" class="py-name" href="#" onclick="return doclink('link-0', '__revision__', 'link-0');">__revision__</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1501</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">sys</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">os</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">struct</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable fabio.TiffIO.DEBUG=fabio.TiffIO-module.html#DEBUG"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-1', 'DEBUG', 'link-1');">DEBUG</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt id="link-2" class="py-name" targets="Variable fabio.TiffIO.ALLOW_MULTIPLE_STRIPS=fabio.TiffIO-module.html#ALLOW_MULTIPLE_STRIPS"><a title="fabio.TiffIO.ALLOW_MULTIPLE_STRIPS" class="py-name" href="#" onclick="return doclink('link-2', 'ALLOW_MULTIPLE_STRIPS', 'link-2');">ALLOW_MULTIPLE_STRIPS</a></tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt id="link-3" class="py-name" targets="Variable fabio.TiffIO.TAG_ID=fabio.TiffIO-module.html#TAG_ID"><a title="fabio.TiffIO.TAG_ID" class="py-name" href="#" onclick="return doclink('link-3', 'TAG_ID', 'link-3');">TAG_ID</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-number">256</tt><tt class="py-op">:</tt><tt class="py-string">"NumberOfColumns"</tt><tt class="py-op">,</tt> <tt class="py-com [...]
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-number">257</tt><tt class="py-op">:</tt><tt class="py-string">"NumberOfRows"</tt><tt class="py-op">,</tt> <tt class="py-comment"># S or L ImageHeight</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-number">258</tt><tt class="py-op">:</tt><tt class="py-string">"BitsPerSample"</tt><tt class="py-op">,</tt> <tt class="py-comment"># S Number of bits per component</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-number">259</tt><tt class="py-op">:</tt><tt class="py-string">"Compression"</tt><tt class="py-op">,</tt> <tt class="py-comment"># SHORT (1 - NoCompression, ... </tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-number">262</tt><tt class="py-op">:</tt><tt class="py-string">"PhotometricInterpretation"</tt><tt class="py-op">,</tt> <tt class="py-comment"># SHORT (0 - WhiteIsZero, 1 -BlackIsZero, 2 - RGB, 3 - Palette color</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-number">270</tt><tt class="py-op">:</tt><tt class="py-string">"ImageDescription"</tt><tt class="py-op">,</tt> <tt class="py-comment"># ASCII</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-number">273</tt><tt class="py-op">:</tt><tt class="py-string">"StripOffsets"</tt><tt class="py-op">,</tt> <tt class="py-comment"># S or L, for each strip, the byte offset of the strip</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-number">278</tt><tt class="py-op">:</tt><tt class="py-string">"RowsPerStrip"</tt><tt class="py-op">,</tt> <tt class="py-comment"># S or L, number of rows in each back may be not for the last</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-number">279</tt><tt class="py-op">:</tt><tt class="py-string">"StripByteCounts"</tt><tt class="py-op">,</tt> <tt class="py-comment"># S or L, The number of bytes in the strip AFTER any compression</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-number">305</tt><tt class="py-op">:</tt><tt class="py-string">"Software"</tt><tt class="py-op">,</tt> <tt class="py-comment"># ASCII</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-number">306</tt><tt class="py-op">:</tt><tt class="py-string">"Date"</tt><tt class="py-op">,</tt> <tt class="py-comment"># ASCII</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-number">320</tt><tt class="py-op">:</tt><tt class="py-string">"Colormap"</tt><tt class="py-op">,</tt> <tt class="py-comment"># Colormap of Palette-color Images </tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-number">339</tt><tt class="py-op">:</tt><tt class="py-string">"SampleFormat"</tt><tt class="py-op">,</tt> <tt class="py-comment"># SHORT Interpretation of data in each pixel</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt class="py-comment">#TILES ARE TO BE SUPPORTED TOO ...</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable fabio.TiffIO.TAG_NUMBER_OF_COLUMNS=fabio.TiffIO-module.html#TAG_NUMBER_OF_COLUMNS"><a title="fabio.TiffIO.TAG_NUMBER_OF_COLUMNS" class="py-name" href="#" onclick="return doclink('link-4', 'TAG_NUMBER_OF_COLUMNS', 'link-4');">TAG_NUMBER_OF_COLUMNS</a></tt> <tt class="py-op">=</tt> <tt class="py-number">256</tt> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt id="link-5" class="py-name" targets="Variable fabio.TiffIO.TAG_NUMBER_OF_ROWS=fabio.TiffIO-module.html#TAG_NUMBER_OF_ROWS"><a title="fabio.TiffIO.TAG_NUMBER_OF_ROWS" class="py-name" href="#" onclick="return doclink('link-5', 'TAG_NUMBER_OF_ROWS', 'link-5');">TAG_NUMBER_OF_ROWS</a></tt> <tt class="py-op">=</tt> <tt class="py-number">257</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"><tt id="link-6" class="py-name" targets="Variable fabio.TiffIO.TAG_BITS_PER_SAMPLE=fabio.TiffIO-module.html#TAG_BITS_PER_SAMPLE"><a title="fabio.TiffIO.TAG_BITS_PER_SAMPLE" class="py-name" href="#" onclick="return doclink('link-6', 'TAG_BITS_PER_SAMPLE', 'link-6');">TAG_BITS_PER_SAMPLE</a></tt> <tt class="py-op">=</tt> <tt class="py-number">258</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"><tt id="link-7" class="py-name" targets="Variable fabio.TiffIO.TAG_PHOTOMETRIC_INTERPRETATION=fabio.TiffIO-module.html#TAG_PHOTOMETRIC_INTERPRETATION"><a title="fabio.TiffIO.TAG_PHOTOMETRIC_INTERPRETATION" class="py-name" href="#" onclick="return doclink('link-7', 'TAG_PHOTOMETRIC_INTERPRETATION', 'link-7');">TAG_PHOTOMETRIC_INTERPRETATION</a></tt> <tt class="py-op">=</tt> <tt class="py-number">262</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"><tt id="link-8" class="py-name" targets="Variable fabio.TiffIO.TAG_COMPRESSION=fabio.TiffIO-module.html#TAG_COMPRESSION"><a title="fabio.TiffIO.TAG_COMPRESSION" class="py-name" href="#" onclick="return doclink('link-8', 'TAG_COMPRESSION', 'link-8');">TAG_COMPRESSION</a></tt> <tt class="py-op">=</tt> <tt class="py-number">259</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"><tt id="link-9" class="py-name" targets="Variable fabio.TiffIO.TAG_IMAGE_DESCRIPTION=fabio.TiffIO-module.html#TAG_IMAGE_DESCRIPTION"><a title="fabio.TiffIO.TAG_IMAGE_DESCRIPTION" class="py-name" href="#" onclick="return doclink('link-9', 'TAG_IMAGE_DESCRIPTION', 'link-9');">TAG_IMAGE_DESCRIPTION</a></tt> <tt class="py-op">=</tt> <tt class="py-number">270</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"><tt id="link-10" class="py-name" targets="Variable fabio.TiffIO.TAG_STRIP_OFFSETS=fabio.TiffIO-module.html#TAG_STRIP_OFFSETS"><a title="fabio.TiffIO.TAG_STRIP_OFFSETS" class="py-name" href="#" onclick="return doclink('link-10', 'TAG_STRIP_OFFSETS', 'link-10');">TAG_STRIP_OFFSETS</a></tt> <tt class="py-op">=</tt> <tt class="py-number">273</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"><tt id="link-11" class="py-name" targets="Variable fabio.TiffIO.TAG_ROWS_PER_STRIP=fabio.TiffIO-module.html#TAG_ROWS_PER_STRIP"><a title="fabio.TiffIO.TAG_ROWS_PER_STRIP" class="py-name" href="#" onclick="return doclink('link-11', 'TAG_ROWS_PER_STRIP', 'link-11');">TAG_ROWS_PER_STRIP</a></tt> <tt class="py-op">=</tt> <tt class="py-number">278</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt id="link-12" class="py-name" targets="Variable fabio.TiffIO.TAG_STRIP_BYTE_COUNTS=fabio.TiffIO-module.html#TAG_STRIP_BYTE_COUNTS"><a title="fabio.TiffIO.TAG_STRIP_BYTE_COUNTS" class="py-name" href="#" onclick="return doclink('link-12', 'TAG_STRIP_BYTE_COUNTS', 'link-12');">TAG_STRIP_BYTE_COUNTS</a></tt> <tt class="py-op">=</tt> <tt class="py-number">279</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt id="link-13" class="py-name" targets="Variable fabio.TiffIO.TAG_SOFTWARE=fabio.TiffIO-module.html#TAG_SOFTWARE"><a title="fabio.TiffIO.TAG_SOFTWARE" class="py-name" href="#" onclick="return doclink('link-13', 'TAG_SOFTWARE', 'link-13');">TAG_SOFTWARE</a></tt> <tt class="py-op">=</tt> <tt class="py-number">305</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"><tt id="link-14" class="py-name" targets="Variable fabio.TiffIO.TAG_DATE=fabio.TiffIO-module.html#TAG_DATE"><a title="fabio.TiffIO.TAG_DATE" class="py-name" href="#" onclick="return doclink('link-14', 'TAG_DATE', 'link-14');">TAG_DATE</a></tt> <tt class="py-op">=</tt> <tt class="py-number">306</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt id="link-15" class="py-name" targets="Variable fabio.TiffIO.TAG_COLORMAP=fabio.TiffIO-module.html#TAG_COLORMAP"><a title="fabio.TiffIO.TAG_COLORMAP" class="py-name" href="#" onclick="return doclink('link-15', 'TAG_COLORMAP', 'link-15');">TAG_COLORMAP</a></tt> <tt class="py-op">=</tt> <tt class="py-number">320</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"><tt id="link-16" class="py-name" targets="Variable fabio.TiffIO.TAG_SAMPLE_FORMAT=fabio.TiffIO-module.html#TAG_SAMPLE_FORMAT"><a title="fabio.TiffIO.TAG_SAMPLE_FORMAT" class="py-name" href="#" onclick="return doclink('link-16', 'TAG_SAMPLE_FORMAT', 'link-16');">TAG_SAMPLE_FORMAT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">339</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"><tt id="link-17" class="py-name" targets="Variable fabio.TiffIO.FIELD_TYPE=fabio.TiffIO-module.html#FIELD_TYPE"><a title="fabio.TiffIO.FIELD_TYPE" class="py-name" href="#" onclick="return doclink('link-17', 'FIELD_TYPE', 'link-17');">FIELD_TYPE</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'BYTE'</tt><tt class [...]
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-number">2</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'ASCII'</tt><tt class="py-op">,</tt> <tt class="py-string">"s"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#string ending with binary zero</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-number">3</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'SHORT'</tt><tt class="py-op">,</tt> <tt class="py-string">"H"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'LONG'</tt><tt class="py-op">,</tt> <tt class="py-string">"I"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-number">5</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'RATIONAL'</tt><tt class="py-op">,</tt> <tt class="py-string">"II"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-number">6</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'SBYTE'</tt><tt class="py-op">,</tt> <tt class="py-string">"b"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-number">7</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'UNDEFINED'</tt><tt class="py-op">,</tt> <tt class="py-string">"B"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-number">8</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'SSHORT'</tt><tt class="py-op">,</tt> <tt class="py-string">"h"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-number">9</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'SLONG'</tt><tt class="py-op">,</tt> <tt class="py-string">"i"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-number">10</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'SRATIONAL'</tt><tt class="py-op">,</tt> <tt class="py-string">"ii"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-number">11</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'FLOAT'</tt><tt class="py-op">,</tt> <tt class="py-string">"f"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-number">12</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-string">'DOUBLE'</tt><tt class="py-op">,</tt> <tt class="py-string">"d"</tt><tt class="py-op">)</tt><tt class="py-op">}</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"><tt id="link-18" class="py-name" targets="Variable fabio.TiffIO.FIELD_TYPE_OUT=fabio.TiffIO-module.html#FIELD_TYPE_OUT"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-18', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-string">'B'</tt><tt class="py-op">:</tt> <tt class="py-number">1</tt><tt class="p [...]
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-string">'s'</tt><tt class="py-op">:</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-string">'H'</tt><tt class="py-op">:</tt> <tt class="py-number">3</tt><tt class="py-op">,</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-string">'I'</tt><tt class="py-op">:</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-string">'II'</tt><tt class="py-op">:</tt> <tt class="py-number">5</tt><tt class="py-op">,</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-string">'b'</tt><tt class="py-op">:</tt> <tt class="py-number">6</tt><tt class="py-op">,</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-string">'h'</tt><tt class="py-op">:</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-string">'i'</tt><tt class="py-op">:</tt> <tt class="py-number">9</tt><tt class="py-op">,</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-string">'ii'</tt><tt class="py-op">:</tt> <tt class="py-number">10</tt><tt class="py-op">,</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-string">'f'</tt><tt class="py-op">:</tt> <tt class="py-number">11</tt><tt class="py-op">,</tt> </tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-string">'d'</tt><tt class="py-op">:</tt> <tt class="py-number">12</tt><tt class="py-op">}</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt class="py-comment">#sample formats (http://www.awaresystems.be/imaging/tiff/tiffflags/sampleformat.html)</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"><tt id="link-19" class="py-name" targets="Variable fabio.TiffIO.SAMPLE_FORMAT_UINT=fabio.TiffIO-module.html#SAMPLE_FORMAT_UINT"><a title="fabio.TiffIO.SAMPLE_FORMAT_UINT" class="py-name" href="#" onclick="return doclink('link-19', 'SAMPLE_FORMAT_UINT', 'link-19');">SAMPLE_FORMAT_UINT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt id="link-20" class="py-name" targets="Variable fabio.TiffIO.SAMPLE_FORMAT_INT=fabio.TiffIO-module.html#SAMPLE_FORMAT_INT"><a title="fabio.TiffIO.SAMPLE_FORMAT_INT" class="py-name" href="#" onclick="return doclink('link-20', 'SAMPLE_FORMAT_INT', 'link-20');">SAMPLE_FORMAT_INT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">2</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"><tt id="link-21" class="py-name" targets="Variable fabio.TiffIO.SAMPLE_FORMAT_FLOAT=fabio.TiffIO-module.html#SAMPLE_FORMAT_FLOAT"><a title="fabio.TiffIO.SAMPLE_FORMAT_FLOAT" class="py-name" href="#" onclick="return doclink('link-21', 'SAMPLE_FORMAT_FLOAT', 'link-21');">SAMPLE_FORMAT_FLOAT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">3</tt> <tt class="py-comment">#floating point</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"><tt id="link-22" class="py-name" targets="Variable fabio.TiffIO.SAMPLE_FORMAT_VOID=fabio.TiffIO-module.html#SAMPLE_FORMAT_VOID"><a title="fabio.TiffIO.SAMPLE_FORMAT_VOID" class="py-name" href="#" onclick="return doclink('link-22', 'SAMPLE_FORMAT_VOID', 'link-22');">SAMPLE_FORMAT_VOID</a></tt> <tt class="py-op">=</tt> <tt class="py-number">4</tt> <tt class="py-comment">#undefined data, usually assumed UINT</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"><tt id="link-23" class="py-name" targets="Variable fabio.TiffIO.SAMPLE_FORMAT_COMPLEXINT=fabio.TiffIO-module.html#SAMPLE_FORMAT_COMPLEXINT"><a title="fabio.TiffIO.SAMPLE_FORMAT_COMPLEXINT" class="py-name" href="#" onclick="return doclink('link-23', 'SAMPLE_FORMAT_COMPLEXINT', 'link-23');">SAMPLE_FORMAT_COMPLEXINT</a></tt> <tt class="py-op">=</tt> <tt class="py-number">5</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"><tt id="link-24" class="py-name" targets="Variable fabio.TiffIO.SAMPLE_FORMAT_COMPLEXIEEEFP=fabio.TiffIO-module.html#SAMPLE_FORMAT_COMPLEXIEEEFP"><a title="fabio.TiffIO.SAMPLE_FORMAT_COMPLEXIEEEFP" class="py-name" href="#" onclick="return doclink('link-24', 'SAMPLE_FORMAT_COMPLEXIEEEFP', 'link-24');">SAMPLE_FORMAT_COMPLEXIEEEFP</a></tt> <tt class="py-op">=</tt> <tt class="py-number">6</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> </tt>
-<a name="TiffIO"></a><div id="TiffIO-def"><a name="L94"></a><tt class="py-lineno"> 94</tt> <a class="py-toggle" href="#" id="TiffIO-toggle" onclick="return toggle('TiffIO');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html">TiffIO</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="TiffIO-collapsed" style="display:none;" pad="++++" indent="++++"></div><div id="TiffIO-expanded"><a name="TiffIO.__init__"></a><div id="TiffIO.__init__-def"><a name="L95"></a><tt class="py-lineno"> 95</tt> <a class="py-toggle" href="#" id="TiffIO.__init__-toggle" onclick="return toggle('TiffIO.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#__init__">__init__</a><tt class="py-op">(</tt>< [...]
-</div><div id="TiffIO.__init__-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.__init__-expanded"><a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">mode</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-name">mode</tt> <tt class="py-op">=</tt> <tt class="py-string">'rb'</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'b'</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">mode</tt><tt class="py-op">:</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-name">mode</tt> <tt class="py-op">=</tt> <tt class="py-name">mode</tt> <tt class="py-op">+</tt> <tt class="py-string">'b'</tt> </tt>
-<a name="L100"></a><tt class="py-lineno"> 100</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'a'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">mode</tt><tt class="py-op">.</tt><tt class="py-name">lower</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L101"></a><tt class="py-lineno"> 101</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">(</tt><tt class="py-string">"Mode %s makes no sense on TIFF files. Consider 'rb+'"</tt> <tt class="py-op">%</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L102"></a><tt class="py-lineno"> 102</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-string">'w'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L103"></a><tt class="py-lineno"> 103</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'+'</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">mode</tt><tt class="py-op">:</tt> </tt>
-<a name="L104"></a><tt class="py-lineno"> 104</tt> <tt class="py-line"> <tt class="py-name">mode</tt> <tt class="py-op">+=</tt> <tt class="py-string">'+'</tt> </tt>
-<a name="L105"></a><tt class="py-lineno"> 105</tt> <tt class="py-line"> <tt class="py-comment">#if isinstance(filename, file): #does not work in python 3</tt> </tt>
-<a name="L106"></a><tt class="py-lineno"> 106</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-string">"seek"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L107"></a><tt class="py-lineno"> 107</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">filename</tt> </tt>
-<a name="L108"></a><tt class="py-lineno"> 108</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_access</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L109"></a><tt class="py-lineno"> 109</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L110"></a><tt class="py-lineno"> 110</tt> <tt class="py-line"> <tt class="py-comment">#the b is needed for windows and python 3</tt> </tt>
-<a name="L111"></a><tt class="py-lineno"> 111</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L112"></a><tt class="py-lineno"> 112</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_access</tt> <tt class="py-op">=</tt> <tt class="py-name">mode</tt> </tt>
-<a name="L113"></a><tt class="py-lineno"> 113</tt> <tt class="py-line"> </tt>
-<a name="L114"></a><tt class="py-lineno"> 114</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name" targets="Method fabio.TiffIO.TiffIO._initInternalVariables()=fabio.TiffIO.TiffIO-class.html#_initInternalVariables"><a title="fabio.TiffIO.TiffIO._initInternalVariables" class="py-name" href="#" onclick="return doclink('link-25', '_initInternalVariables', 'link-25');">_initInternalVariables</a></tt><tt class="py-op">(</tt><t [...]
-<a name="L115"></a><tt class="py-lineno"> 115</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_maxImageCacheLength</tt> <tt class="py-op">=</tt> <tt class="py-name">cache_length</tt> </tt>
-<a name="L116"></a><tt class="py-lineno"> 116</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_forceMonoOutput</tt> <tt class="py-op">=</tt> <tt class="py-name">mono_output</tt> </tt>
-</div><a name="L117"></a><tt class="py-lineno"> 117</tt> <tt class="py-line"> </tt>
-<a name="TiffIO._initInternalVariables"></a><div id="TiffIO._initInternalVariables-def"><a name="L118"></a><tt class="py-lineno"> 118</tt> <a class="py-toggle" href="#" id="TiffIO._initInternalVariables-toggle" onclick="return toggle('TiffIO._initInternalVariables');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#_initInternalVariables">_initInternalVariables</a><tt class="py-op">(</tt><tt class="py-param">self</t [...]
-</div><div id="TiffIO._initInternalVariables-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO._initInternalVariables-expanded"><a name="L119"></a><tt class="py-lineno"> 119</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fd</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L120"></a><tt class="py-lineno"> 120</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> </tt>
-<a name="L121"></a><tt class="py-lineno"> 121</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L122"></a><tt class="py-lineno"> 122</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt> </tt>
-<a name="L123"></a><tt class="py-lineno"> 123</tt> <tt class="py-line"> <tt class="py-comment"># read the order</tt> </tt>
-<a name="L124"></a><tt class="py-lineno"> 124</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L125"></a><tt class="py-lineno"> 125</tt> <tt class="py-line"> <tt class="py-name">order</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-26', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">decode</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L126"></a><tt class="py-lineno"> 126</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-27" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-27', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">order</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L127"></a><tt class="py-lineno"> 127</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">order</tt> <tt class="py-op">==</tt> <tt class="py-string">"II"</tt><tt class="py-op">:</tt> </tt>
-<a name="L128"></a><tt class="py-lineno"> 128</tt> <tt class="py-line"> <tt class="py-comment">#intel, little endian</tt> </tt>
-<a name="L129"></a><tt class="py-lineno"> 129</tt> <tt class="py-line"> <tt class="py-name">fileOrder</tt> <tt class="py-op">=</tt> <tt class="py-string">"little"</tt> </tt>
-<a name="L130"></a><tt class="py-lineno"> 130</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> <tt class="py-op">=</tt> <tt class="py-string">'<'</tt> </tt>
-<a name="L131"></a><tt class="py-lineno"> 131</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">order</tt> <tt class="py-op">==</tt> <tt class="py-string">"MM"</tt><tt class="py-op">:</tt> </tt>
-<a name="L132"></a><tt class="py-lineno"> 132</tt> <tt class="py-line"> <tt class="py-comment">#motorola, high endian</tt> </tt>
-<a name="L133"></a><tt class="py-lineno"> 133</tt> <tt class="py-line"> <tt class="py-name">fileOrder</tt> <tt class="py-op">=</tt> <tt class="py-string">"big"</tt> </tt>
-<a name="L134"></a><tt class="py-lineno"> 134</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> <tt class="py-op">=</tt> <tt class="py-string">'>'</tt> </tt>
-<a name="L135"></a><tt class="py-lineno"> 135</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L136"></a><tt class="py-lineno"> 136</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">(</tt><tt class="py-string">"File is not a Mar CCD file, nor a TIFF file"</tt><tt class="py-op">)</tt> </tt>
-<a name="L137"></a><tt class="py-lineno"> 137</tt> <tt class="py-line"> <tt class="py-name">a</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-28', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">)</tt> </tt>
-<a name="L138"></a><tt class="py-lineno"> 138</tt> <tt class="py-line"> <tt class="py-name">fortyTwo</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method fabio.edfimage.edfimage.unpack()=fabio.edfimage.edfimage-class.html#unpack,Method fabio.tifimage.Image_File_Directory.unpack()=fabio.tifimage.Image_File_Directory-class.html#unpack,Method fabio.tifimage.Image_File_Directory_entry.unpack()=fabio. [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-29', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> <tt class="py-op">+</tt> <tt class="py-string">"H"</tt><tt class="py-op">,</tt> <tt class="py-name">a</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L139"></a><tt class="py-lineno"> 139</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fortyTwo</tt> <tt class="py-op">!=</tt> <tt class="py-number">42</tt><tt class="py-op">:</tt> </tt>
-<a name="L140"></a><tt class="py-lineno"> 140</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">(</tt><tt class="py-string">"Invalid TIFF version %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">fortyTwo</tt><tt class="py-op">)</tt> </tt>
-<a name="L141"></a><tt class="py-lineno"> 141</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L142"></a><tt class="py-lineno"> 142</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-30" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-30', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L143"></a><tt class="py-lineno"> 143</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"VALID TIFF VERSION"</tt><tt class="py-op">)</tt> </tt>
-<a name="L144"></a><tt class="py-lineno"> 144</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">byteorder</tt> <tt class="py-op">!=</tt> <tt class="py-name">fileOrder</tt><tt class="py-op">:</tt> </tt>
-<a name="L145"></a><tt class="py-lineno"> 145</tt> <tt class="py-line"> <tt class="py-name">swap</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L146"></a><tt class="py-lineno"> 146</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L147"></a><tt class="py-lineno"> 147</tt> <tt class="py-line"> <tt class="py-name">swap</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L148"></a><tt class="py-lineno"> 148</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L149"></a><tt class="py-lineno"> 149</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">byteorder</tt> <tt class="py-op">==</tt> <tt class="py-string">"little"</tt><tt class="py-op">:</tt> </tt>
-<a name="L150"></a><tt class="py-lineno"> 150</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> <tt class="py-op">=</tt> <tt class="py-string">'<'</tt> </tt>
-<a name="L151"></a><tt class="py-lineno"> 151</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L152"></a><tt class="py-lineno"> 152</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> <tt class="py-op">=</tt> <tt class="py-string">'>'</tt> </tt>
-<a name="L153"></a><tt class="py-lineno"> 153</tt> <tt class="py-line"> <tt class="py-name">swap</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L154"></a><tt class="py-lineno"> 154</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_swap</tt> <tt class="py-op">=</tt> <tt class="py-name">swap</tt> </tt>
-<a name="L155"></a><tt class="py-lineno"> 155</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_IFD</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L156"></a><tt class="py-lineno"> 156</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCacheIndex</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L157"></a><tt class="py-lineno"> 157</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCache</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L158"></a><tt class="py-lineno"> 158</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCacheIndex</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L159"></a><tt class="py-lineno"> 159</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCache</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L160"></a><tt class="py-lineno"> 160</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name" targets="Method fabio.TiffIO.TiffIO.getImageFileDirectories()=fabio.TiffIO.TiffIO-class.html#getImageFileDirectories"><a title="fabio.TiffIO.TiffIO.getImageFileDirectories" class="py-name" href="#" onclick="return doclink('link-31', 'getImageFileDirectories', 'link-31');">getImageFileDirectories</a></tt><tt class="py-op">(</ [...]
-</div><a name="L161"></a><tt class="py-lineno"> 161</tt> <tt class="py-line"> </tt>
-<a name="TiffIO.__makeSureFileIsOpen"></a><div id="TiffIO.__makeSureFileIsOpen-def"><a name="L162"></a><tt class="py-lineno"> 162</tt> <a class="py-toggle" href="#" id="TiffIO.__makeSureFileIsOpen-toggle" onclick="return toggle('TiffIO.__makeSureFileIsOpen');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#__makeSureFileIsOpen">__makeSureFileIsOpen</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class= [...]
-</div><div id="TiffIO.__makeSureFileIsOpen-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.__makeSureFileIsOpen-expanded"><a name="L163"></a><tt class="py-lineno"> 163</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">closed</tt><tt class="py-op">:</tt> </tt>
-<a name="L164"></a><tt class="py-lineno"> 164</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
-<a name="L165"></a><tt class="py-lineno"> 165</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-32" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-32', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L166"></a><tt class="py-lineno"> 166</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Reopening closed file"</tt><tt class="py-op">)</tt> </tt>
-<a name="L167"></a><tt class="py-lineno"> 167</tt> <tt class="py-line"> <tt class="py-name">fileName</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">name</tt> </tt>
-<a name="L168"></a><tt class="py-lineno"> 168</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_access</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L169"></a><tt class="py-lineno"> 169</tt> <tt class="py-line"> <tt class="py-comment">#we do not own the file</tt> </tt>
-<a name="L170"></a><tt class="py-lineno"> 170</tt> <tt class="py-line"> <tt class="py-comment">#open in read mode</tt> </tt>
-<a name="L171"></a><tt class="py-lineno"> 171</tt> <tt class="py-line"> <tt class="py-name">newFile</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fileName</tt><tt class="py-op">,</tt> <tt class="py-string">'rb'</tt><tt class="py-op">)</tt> </tt>
-<a name="L172"></a><tt class="py-lineno"> 172</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L173"></a><tt class="py-lineno"> 173</tt> <tt class="py-line"> <tt class="py-name">newFile</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fileName</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_access</tt><tt class="py-op">)</tt> </tt>
-<a name="L174"></a><tt class="py-lineno"> 174</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">newFile</tt> </tt>
-</div><a name="L175"></a><tt class="py-lineno"> 175</tt> <tt class="py-line"> </tt>
-<a name="TiffIO.__makeSureFileIsClosed"></a><div id="TiffIO.__makeSureFileIsClosed-def"><a name="L176"></a><tt class="py-lineno"> 176</tt> <a class="py-toggle" href="#" id="TiffIO.__makeSureFileIsClosed-toggle" onclick="return toggle('TiffIO.__makeSureFileIsClosed');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#__makeSureFileIsClosed">__makeSureFileIsClosed</a><tt class="py-op">(</tt><tt class="py-param">self</t [...]
-</div><div id="TiffIO.__makeSureFileIsClosed-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.__makeSureFileIsClosed-expanded"><a name="L177"></a><tt class="py-lineno"> 177</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_access</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L178"></a><tt class="py-lineno"> 178</tt> <tt class="py-line"> <tt class="py-comment">#we do not own the file</tt> </tt>
-<a name="L179"></a><tt class="py-lineno"> 179</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-33" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-33', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L180"></a><tt class="py-lineno"> 180</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Not closing not owned file"</tt><tt class="py-op">)</tt> </tt>
-<a name="L181"></a><tt class="py-lineno"> 181</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
-<a name="L182"></a><tt class="py-lineno"> 182</tt> <tt class="py-line"> </tt>
-<a name="L183"></a><tt class="py-lineno"> 183</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">closed</tt><tt class="py-op">:</tt> </tt>
-<a name="L184"></a><tt class="py-lineno"> 184</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L185"></a><tt class="py-lineno"> 185</tt> <tt class="py-line"> </tt>
-<a name="TiffIO.getNumberOfImages"></a><div id="TiffIO.getNumberOfImages-def"><a name="L186"></a><tt class="py-lineno"> 186</tt> <a class="py-toggle" href="#" id="TiffIO.getNumberOfImages-toggle" onclick="return toggle('TiffIO.getNumberOfImages');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#getNumberOfImages">getNumberOfImages</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt [...]
-</div><div id="TiffIO.getNumberOfImages-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.getNumberOfImages-expanded"><a name="L187"></a><tt class="py-lineno"> 187</tt> <tt class="py-line"> <tt class="py-comment">#update for the case someone has done anything?</tt> </tt>
-<a name="L188"></a><tt class="py-lineno"> 188</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Method fabio.TiffIO.TiffIO._updateIFD()=fabio.TiffIO.TiffIO-class.html#_updateIFD"><a title="fabio.TiffIO.TiffIO._updateIFD" class="py-name" href="#" onclick="return doclink('link-34', '_updateIFD', 'link-34');">_updateIFD</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L189"></a><tt class="py-lineno"> 189</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-35" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-35', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_IFD</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L190"></a><tt class="py-lineno"> 190</tt> <tt class="py-line"> </tt>
-<a name="TiffIO._updateIFD"></a><div id="TiffIO._updateIFD-def"><a name="L191"></a><tt class="py-lineno"> 191</tt> <a class="py-toggle" href="#" id="TiffIO._updateIFD-toggle" onclick="return toggle('TiffIO._updateIFD');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#_updateIFD">_updateIFD</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="TiffIO._updateIFD-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO._updateIFD-expanded"><a name="L192"></a><tt class="py-lineno"> 192</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name" targets="Method fabio.TiffIO.TiffIO.__makeSureFileIsOpen()=fabio.TiffIO.TiffIO-class.html#__makeSureFileIsOpen"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsOpen" class="py-name" href="#" [...]
-<a name="L193"></a><tt class="py-lineno"> 193</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="fabio.TiffIO.TiffIO.getImageFileDirectories" class="py-name" href="#" onclick="return doclink('link-37', 'getImageFileDirectories', 'link-31');">getImageFileDirectories</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L194"></a><tt class="py-lineno"> 194</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name" targets="Method fabio.TiffIO.TiffIO.__makeSureFileIsClosed()=fabio.TiffIO.TiffIO-class.html#__makeSureFileIsClosed"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsClosed" class="py-name" href="#" onclick="return doclink('link-38', '__makeSureFileIsClosed', 'link-38');">__makeSureFileIsClosed</a></tt><tt class="py-op">(</tt><t [...]
-</div><a name="L195"></a><tt class="py-lineno"> 195</tt> <tt class="py-line"> </tt>
-<a name="TiffIO.getImageFileDirectories"></a><div id="TiffIO.getImageFileDirectories-def"><a name="L196"></a><tt class="py-lineno"> 196</tt> <a class="py-toggle" href="#" id="TiffIO.getImageFileDirectories-toggle" onclick="return toggle('TiffIO.getImageFileDirectories');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#getImageFileDirectories">getImageFileDirectories</a><tt class="py-op">(</tt><tt class="py-param">s [...]
-</div><div id="TiffIO.getImageFileDirectories-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.getImageFileDirectories-expanded"><a name="L197"></a><tt class="py-lineno"> 197</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fd</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L198"></a><tt class="py-lineno"> 198</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> </tt>
-<a name="L199"></a><tt class="py-lineno"> 199</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L200"></a><tt class="py-lineno"> 200</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt> </tt>
-<a name="L201"></a><tt class="py-lineno"> 201</tt> <tt class="py-line"> <tt class="py-name">st</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> </tt>
-<a name="L202"></a><tt class="py-lineno"> 202</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">)</tt> </tt>
-<a name="L203"></a><tt class="py-lineno"> 203</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_IFD</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L204"></a><tt class="py-lineno"> 204</tt> <tt class="py-line"> <tt class="py-name">nImages</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L205"></a><tt class="py-lineno"> 205</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt> </tt>
-<a name="L206"></a><tt class="py-lineno"> 206</tt> <tt class="py-line"> <tt class="py-name">inStr</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-39', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L207"></a><tt class="py-lineno"> 207</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-40" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-40', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">inStr</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L208"></a><tt class="py-lineno"> 208</tt> <tt class="py-line"> <tt class="py-name">offsetToIFD</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L209"></a><tt class="py-lineno"> 209</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L210"></a><tt class="py-lineno"> 210</tt> <tt class="py-line"> <tt class="py-name">offsetToIFD</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-41', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">inStr</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L211"></a><tt class="py-lineno"> 211</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-42" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-42', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L212"></a><tt class="py-lineno"> 212</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Offset to first IFD = %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">offsetToIFD</tt><tt class="py-op">)</tt> </tt>
-<a name="L213"></a><tt class="py-lineno"> 213</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">offsetToIFD</tt> <tt class="py-op">!=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L214"></a><tt class="py-lineno"> 214</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_IFD</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">offsetToIFD</tt><tt class="py-op">)</tt> </tt>
-<a name="L215"></a><tt class="py-lineno"> 215</tt> <tt class="py-line"> <tt class="py-name">nImages</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L216"></a><tt class="py-lineno"> 216</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">offsetToIFD</tt><tt class="py-op">)</tt> </tt>
-<a name="L217"></a><tt class="py-lineno"> 217</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'H'</tt> </tt>
-<a name="L218"></a><tt class="py-lineno"> 218</tt> <tt class="py-line"> <tt class="py-name">numberOfDirectoryEntries</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-43', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-44', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L219"></a><tt class="py-lineno"> 219</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-45" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-45', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L220"></a><tt class="py-lineno"> 220</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Number of directory entries = %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">numberOfDirectoryEntries</tt><tt class="py-op">)</tt> </tt>
-<a name="L221"></a><tt class="py-lineno"> 221</tt> <tt class="py-line"> </tt>
-<a name="L222"></a><tt class="py-lineno"> 222</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt> </tt>
-<a name="L223"></a><tt class="py-lineno"> 223</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">offsetToIFD</tt> <tt class="py-op">+</tt> <tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py-number">12</tt> <tt class="py-op">*</tt> <tt class="py-name">numberOfDirectoryEntries</tt><tt class="py-op">)</tt> </tt>
-<a name="L224"></a><tt class="py-lineno"> 224</tt> <tt class="py-line"> <tt class="py-name">offsetToIFD</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-46', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-47', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L225"></a><tt class="py-lineno"> 225</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-48" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-48', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L226"></a><tt class="py-lineno"> 226</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Next Offset to IFD = %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">offsetToIFD</tt><tt class="py-op">)</tt> </tt>
-<a name="L227"></a><tt class="py-lineno"> 227</tt> <tt class="py-line"> <tt class="py-comment">#offsetToIFD = 0 </tt> </tt>
-<a name="L228"></a><tt class="py-lineno"> 228</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-49" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-49', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L229"></a><tt class="py-lineno"> 229</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Number of images found = %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">nImages</tt><tt class="py-op">)</tt> </tt>
-<a name="L230"></a><tt class="py-lineno"> 230</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">nImages</tt> </tt>
-</div><a name="L231"></a><tt class="py-lineno"> 231</tt> <tt class="py-line"> </tt>
-<a name="TiffIO._parseImageFileDirectory"></a><div id="TiffIO._parseImageFileDirectory-def"><a name="L232"></a><tt class="py-lineno"> 232</tt> <a class="py-toggle" href="#" id="TiffIO._parseImageFileDirectory-toggle" onclick="return toggle('TiffIO._parseImageFileDirectory');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#_parseImageFileDirectory">_parseImageFileDirectory</a><tt class="py-op">(</tt><tt class="py-pa [...]
-</div><div id="TiffIO._parseImageFileDirectory-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO._parseImageFileDirectory-expanded"><a name="L233"></a><tt class="py-lineno"> 233</tt> <tt class="py-line"> <tt class="py-name">offsetToIFD</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_IFD</tt><tt class="py-op">[</tt><tt class="py-name">nImage</tt><tt class="py-op">]</tt> </tt>
-<a name="L234"></a><tt class="py-lineno"> 234</tt> <tt class="py-line"> <tt class="py-name">st</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> </tt>
-<a name="L235"></a><tt class="py-lineno"> 235</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> </tt>
-<a name="L236"></a><tt class="py-lineno"> 236</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">offsetToIFD</tt><tt class="py-op">)</tt> </tt>
-<a name="L237"></a><tt class="py-lineno"> 237</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'H'</tt> </tt>
-<a name="L238"></a><tt class="py-lineno"> 238</tt> <tt class="py-line"> <tt class="py-name">numberOfDirectoryEntries</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-50', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-51', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L239"></a><tt class="py-lineno"> 239</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-52" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-52', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L240"></a><tt class="py-lineno"> 240</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Number of directory entries = %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">numberOfDirectoryEntries</tt><tt class="py-op">)</tt> </tt>
-<a name="L241"></a><tt class="py-lineno"> 241</tt> <tt class="py-line"> </tt>
-<a name="L242"></a><tt class="py-lineno"> 242</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHI4s'</tt> </tt>
-<a name="L243"></a><tt class="py-lineno"> 243</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L244"></a><tt class="py-lineno"> 244</tt> <tt class="py-line"> <tt class="py-name">fieldTypeList</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L245"></a><tt class="py-lineno"> 245</tt> <tt class="py-line"> <tt class="py-name">nValuesList</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L246"></a><tt class="py-lineno"> 246</tt> <tt class="py-line"> <tt class="py-name">valueOffsetList</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L247"></a><tt class="py-lineno"> 247</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-53" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-53', 'i', 'link-53');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">numberOfDirectoryEntries</tt><tt class="py-op">)</tt>< [...]
-<a name="L248"></a><tt class="py-lineno"> 248</tt> <tt class="py-line"> <tt class="py-name">tagID</tt><tt class="py-op">,</tt> <tt class="py-name">fieldType</tt><tt class="py-op">,</tt> <tt class="py-name">nValues</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffset</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-54', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-55', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">12</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L249"></a><tt class="py-lineno"> 249</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">tagID</tt><tt class="py-op">)</tt> </tt>
-<a name="L250"></a><tt class="py-lineno"> 250</tt> <tt class="py-line"> <tt class="py-name">fieldTypeList</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">fieldType</tt><tt class="py-op">)</tt> </tt>
-<a name="L251"></a><tt class="py-lineno"> 251</tt> <tt class="py-line"> <tt class="py-name">nValuesList</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">nValues</tt><tt class="py-op">)</tt> </tt>
-<a name="L252"></a><tt class="py-lineno"> 252</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nValues</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L253"></a><tt class="py-lineno"> 253</tt> <tt class="py-line"> <tt class="py-name">ftype</tt><tt class="py-op">,</tt> <tt class="py-name">vfmt</tt> <tt class="py-op">=</tt> <tt id="link-56" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE" class="py-name" href="#" onclick="return doclink('link-56', 'FIELD_TYPE', 'link-17');">FIELD_TYPE</a></tt><tt class="py-op">[</tt><tt class="py-name">fieldType</tt><tt class="py-op">]</tt> </tt>
-<a name="L254"></a><tt class="py-lineno"> 254</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">ftype</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">'ASCII'</tt><tt class="py-op">,</tt> <tt class="py-string">'RATIONAL'</tt><tt class="py-op">,</tt> <tt class="py-string">'SRATIONAL'</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L255"></a><tt class="py-lineno"> 255</tt> <tt class="py-line"> <tt class="py-name">vfmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-name">vfmt</tt> </tt>
-<a name="L256"></a><tt class="py-lineno"> 256</tt> <tt class="py-line"> <tt class="py-name">actualValue</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-57', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">vfmt</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffset</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">:</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">vfmt</tt><tt class="p [...]
-<a name="L257"></a><tt class="py-lineno"> 257</tt> <tt class="py-line"> <tt class="py-name">valueOffsetList</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">actualValue</tt><tt class="py-op">)</tt> </tt>
-<a name="L258"></a><tt class="py-lineno"> 258</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L259"></a><tt class="py-lineno"> 259</tt> <tt class="py-line"> <tt class="py-name">valueOffsetList</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">valueOffset</tt><tt class="py-op">)</tt> </tt>
-<a name="L260"></a><tt class="py-lineno"> 260</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt class="py-name">nValues</tt> <tt class="py-op"><</tt> <tt class="py-number">5</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-op">(</tt><tt class="py-name">fieldType</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L261"></a><tt class="py-lineno"> 261</tt> <tt class="py-line"> <tt class="py-name">ftype</tt><tt class="py-op">,</tt> <tt class="py-name">vfmt</tt> <tt class="py-op">=</tt> <tt id="link-58" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE" class="py-name" href="#" onclick="return doclink('link-58', 'FIELD_TYPE', 'link-17');">FIELD_TYPE</a></tt><tt class="py-op">[</tt><tt class="py-name">fieldType</tt><tt class="py-op">]</tt> </tt>
-<a name="L262"></a><tt class="py-lineno"> 262</tt> <tt class="py-line"> <tt class="py-name">vfmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">"%d%s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nValues</tt><tt class="py-op">,</tt> <tt class="py-name">vfmt</tt><tt class="py-op">)</tt> </tt>
-<a name="L263"></a><tt class="py-lineno"> 263</tt> <tt class="py-line"> <tt class="py-name">actualValue</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-59', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">vfmt</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffset</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">:</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">vfmt</tt><tt class="p [...]
-<a name="L264"></a><tt class="py-lineno"> 264</tt> <tt class="py-line"> <tt class="py-name">valueOffsetList</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">actualValue</tt><tt class="py-op">)</tt> </tt>
-<a name="L265"></a><tt class="py-lineno"> 265</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L266"></a><tt class="py-lineno"> 266</tt> <tt class="py-line"> <tt class="py-name">valueOffsetList</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">valueOffset</tt><tt class="py-op">)</tt> </tt>
-<a name="L267"></a><tt class="py-lineno"> 267</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-60" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-60', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L268"></a><tt class="py-lineno"> 268</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">tagID</tt> <tt class="py-keyword">in</tt> <tt id="link-61" class="py-name"><a title="fabio.TiffIO.TAG_ID" class="py-name" href="#" onclick="return doclink('link-61', 'TAG_ID', 'link-3');">TAG_ID</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L269"></a><tt class="py-lineno"> 269</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"tagID = %s"</tt> <tt class="py-op">%</tt> <tt id="link-62" class="py-name"><a title="fabio.TiffIO.TAG_ID" class="py-name" href="#" onclick="return doclink('link-62', 'TAG_ID', 'link-3');">TAG_ID</a></tt><tt class="py-op">[</tt><tt class="py-name">tagID</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L270"></a><tt class="py-lineno"> 270</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L271"></a><tt class="py-lineno"> 271</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"tagID = %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">tagID</tt><tt class="py-op">)</tt> </tt>
-<a name="L272"></a><tt class="py-lineno"> 272</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"fieldType = %s"</tt> <tt class="py-op">%</tt> <tt id="link-63" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE" class="py-name" href="#" onclick="return doclink('link-63', 'FIELD_TYPE', 'link-17');">FIELD_TYPE</a></tt><tt class="py-op">[</tt><tt class="py-name">fieldType</tt><tt class="py-op">]</tt><tt class="py-op">[ [...]
-<a name="L273"></a><tt class="py-lineno"> 273</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"nValues = %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">nValues</tt><tt class="py-op">)</tt> </tt>
-<a name="L274"></a><tt class="py-lineno"> 274</tt> <tt class="py-line"> <tt class="py-comment">#if nValues == 1:</tt> </tt>
-<a name="L275"></a><tt class="py-lineno"> 275</tt> <tt class="py-line"> <tt class="py-comment"># print("valueOffset = %s" % valueOffset)</tt> </tt>
-<a name="L276"></a><tt class="py-lineno"> 276</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt> </tt>
-</div><a name="L277"></a><tt class="py-lineno"> 277</tt> <tt class="py-line"> </tt>
-<a name="L278"></a><tt class="py-lineno"> 278</tt> <tt class="py-line"> </tt>
-<a name="L279"></a><tt class="py-lineno"> 279</tt> <tt class="py-line"> </tt>
-<a name="TiffIO._readIFDEntry"></a><div id="TiffIO._readIFDEntry-def"><a name="L280"></a><tt class="py-lineno"> 280</tt> <a class="py-toggle" href="#" id="TiffIO._readIFDEntry-toggle" onclick="return toggle('TiffIO._readIFDEntry');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#_readIFDEntry">_readIFDEntry</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">tag</t [...]
-</div><div id="TiffIO._readIFDEntry-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO._readIFDEntry-expanded"><a name="L281"></a><tt class="py-lineno"> 281</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> </tt>
-<a name="L282"></a><tt class="py-lineno"> 282</tt> <tt class="py-line"> <tt class="py-name">st</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> </tt>
-<a name="L283"></a><tt class="py-lineno"> 283</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt class="py-name">tag</tt><tt class="py-op">)</tt> </tt>
-<a name="L284"></a><tt class="py-lineno"> 284</tt> <tt class="py-line"> <tt class="py-name">nValues</tt> <tt class="py-op">=</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt> </tt>
-<a name="L285"></a><tt class="py-lineno"> 285</tt> <tt class="py-line"> <tt class="py-name">output</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L286"></a><tt class="py-lineno"> 286</tt> <tt class="py-line"> <tt class="py-name">ftype</tt><tt class="py-op">,</tt> <tt class="py-name">vfmt</tt> <tt class="py-op">=</tt> <tt id="link-64" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE" class="py-name" href="#" onclick="return doclink('link-64', 'FIELD_TYPE', 'link-17');">FIELD_TYPE</a></tt><tt class="py-op">[</tt><tt class="py-name">fieldTypeList</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt><tt class="py- [...]
-<a name="L287"></a><tt class="py-lineno"> 287</tt> <tt class="py-line"> <tt class="py-name">vfmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">"%d%s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nValues</tt><tt class="py-op">,</tt> <tt class="py-name">vfmt</tt><tt class="py-op">)</tt> </tt>
-<a name="L288"></a><tt class="py-lineno"> 288</tt> <tt class="py-line"> <tt class="py-name">requestedBytes</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">vfmt</tt><tt class="py-op">)</tt> </tt>
-<a name="L289"></a><tt class="py-lineno"> 289</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nValues</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L290"></a><tt class="py-lineno"> 290</tt> <tt class="py-line"> <tt class="py-name">output</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L291"></a><tt class="py-lineno"> 291</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">requestedBytes</tt> <tt class="py-op"><</tt> <tt class="py-number">5</tt><tt class="py-op">:</tt> </tt>
-<a name="L292"></a><tt class="py-lineno"> 292</tt> <tt class="py-line"> <tt class="py-name">output</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L293"></a><tt class="py-lineno"> 293</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L294"></a><tt class="py-lineno"> 294</tt> <tt class="py-line"> <tt class="py-name">offset</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-65', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">"I"</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]< [...]
-<a name="L295"></a><tt class="py-lineno"> 295</tt> <tt class="py-line"> <tt class="py-name">output</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-66', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">vfmt</tt><tt class="py-op">,</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-67', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">requestedBytes</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L296"></a><tt class="py-lineno"> 296</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">output</tt> </tt>
-</div><a name="L297"></a><tt class="py-lineno"> 297</tt> <tt class="py-line"> </tt>
-<a name="TiffIO.getData"></a><div id="TiffIO.getData-def"><a name="L298"></a><tt class="py-lineno"> 298</tt> <a class="py-toggle" href="#" id="TiffIO.getData-toggle" onclick="return toggle('TiffIO.getData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#getData">getData</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nImage</tt><tt class="py-op">,</tt> <tt cl [...]
-</div><div id="TiffIO.getData-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.getData-expanded"><a name="L299"></a><tt class="py-lineno"> 299</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nImage</tt> <tt class="py-op">>=</tt> <tt id="link-68" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-68', 'len', 'link-27');">len</a></tt><tt class="py-op"> [...]
-<a name="L300"></a><tt class="py-lineno"> 300</tt> <tt class="py-line"> <tt class="py-comment">#update prior to raise an index error error</tt> </tt>
-<a name="L301"></a><tt class="py-lineno"> 301</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="fabio.TiffIO.TiffIO._updateIFD" class="py-name" href="#" onclick="return doclink('link-69', '_updateIFD', 'link-34');">_updateIFD</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L302"></a><tt class="py-lineno"> 302</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name" targets="Method fabio.TiffIO.TiffIO._readImage()=fabio.TiffIO.TiffIO-class.html#_readImage"><a title="fabio.TiffIO.TiffIO._readImage" class="py-name" href="#" onclick="return doclink('link-70', '_readImage', 'link-70');">_readImage</a></tt><tt class="py-op">(</tt><tt class="py-name">nImage< [...]
-</div><a name="L303"></a><tt class="py-lineno"> 303</tt> <tt class="py-line"> </tt>
-<a name="TiffIO.getImage"></a><div id="TiffIO.getImage-def"><a name="L304"></a><tt class="py-lineno"> 304</tt> <a class="py-toggle" href="#" id="TiffIO.getImage-toggle" onclick="return toggle('TiffIO.getImage');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#getImage">getImage</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nImage</tt><tt class="py-op">)</tt>< [...]
-</div><div id="TiffIO.getImage-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.getImage-expanded"><a name="L305"></a><tt class="py-lineno"> 305</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-71" class="py-name" targets="Method fabio.TiffIO.TiffIO.getData()=fabio.TiffIO.TiffIO-class.html#getData,Method fabio.edfimage.Frame.getData()=fabio.edfimage.Frame-class.html#ge [...]
-fabio.edfimage.Frame.getData
-fabio.edfimage.edfimage.getData" class="py-name" href="#" onclick="return doclink('link-71', 'getData', 'link-71');">getData</a></tt><tt class="py-op">(</tt><tt class="py-name">nImage</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L306"></a><tt class="py-lineno"> 306</tt> <tt class="py-line"> </tt>
-<a name="TiffIO.getInfo"></a><div id="TiffIO.getInfo-def"><a name="L307"></a><tt class="py-lineno"> 307</tt> <a class="py-toggle" href="#" id="TiffIO.getInfo-toggle" onclick="return toggle('TiffIO.getInfo');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#getInfo">getInfo</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nImage</tt><tt class="py-op">,</tt> <tt cl [...]
-</div><div id="TiffIO.getInfo-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.getInfo-expanded"><a name="L308"></a><tt class="py-lineno"> 308</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nImage</tt> <tt class="py-op">>=</tt> <tt id="link-72" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-72', 'len', 'link-27');">len</a></tt><tt class="py-op"> [...]
-<a name="L309"></a><tt class="py-lineno"> 309</tt> <tt class="py-line"> <tt class="py-comment">#update prior to raise an index error error</tt> </tt>
-<a name="L310"></a><tt class="py-lineno"> 310</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="fabio.TiffIO.TiffIO._updateIFD" class="py-name" href="#" onclick="return doclink('link-73', '_updateIFD', 'link-34');">_updateIFD</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L311"></a><tt class="py-lineno"> 311</tt> <tt class="py-line"> <tt id="link-74" class="py-name" targets="Method fabio.file_series.file_series.current()=fabio.file_series.file_series-class.html#current,Method fabio.file_series.filename_series.current()=fabio.file_series.filename_series-class.html#current"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-74', 'current', 'link-74');">current</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_IFD</tt><tt class="py-op">[</tt><tt class="py-name">nImage</tt><tt class="py-op">]</tt> </tt>
-<a name="L312"></a><tt class="py-lineno"> 312</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name" targets="Method fabio.TiffIO.TiffIO._readInfo()=fabio.TiffIO.TiffIO-class.html#_readInfo"><a title="fabio.TiffIO.TiffIO._readInfo" class="py-name" href="#" onclick="return doclink('link-75', '_readInfo', 'link-75');">_readInfo</a></tt><tt class="py-op">(</tt><tt class="py-name">nImage</tt>< [...]
-</div><a name="L313"></a><tt class="py-lineno"> 313</tt> <tt class="py-line"> </tt>
-<a name="TiffIO._readInfo"></a><div id="TiffIO._readInfo-def"><a name="L314"></a><tt class="py-lineno"> 314</tt> <a class="py-toggle" href="#" id="TiffIO._readInfo-toggle" onclick="return toggle('TiffIO._readInfo');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#_readInfo">_readInfo</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nImage</tt><tt class="py-op">, [...]
-</div><div id="TiffIO._readInfo-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO._readInfo-expanded"><a name="L315"></a><tt class="py-lineno"> 315</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nImage</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCacheIndex</tt><tt class="py-op">:</tt> </tt>
-<a name="L316"></a><tt class="py-lineno"> 316</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-76" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-76', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L317"></a><tt class="py-lineno"> 317</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Reading info from cache"</tt><tt class="py-op">)</tt> </tt>
-<a name="L318"></a><tt class="py-lineno"> 318</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCache</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCacheIndex</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt class="py-name">nImage</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L319"></a><tt class="py-lineno"> 319</tt> <tt class="py-line"> </tt>
-<a name="L320"></a><tt class="py-lineno"> 320</tt> <tt class="py-line"> <tt class="py-comment">#read the header</tt> </tt>
-<a name="L321"></a><tt class="py-lineno"> 321</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsOpen" class="py-name" href="#" onclick="return doclink('link-77', '__makeSureFileIsOpen', 'link-36');">__makeSureFileIsOpen</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L322"></a><tt class="py-lineno"> 322</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name" targets="Method fabio.TiffIO.TiffIO._parseImageFileDirectory()=fabio.TiffIO.T [...]
-<a name="L323"></a><tt class="py-lineno"> 323</tt> <tt class="py-line"> </tt>
-<a name="L324"></a><tt class="py-lineno"> 324</tt> <tt class="py-line"> <tt class="py-comment">#rows and columns</tt> </tt>
-<a name="L325"></a><tt class="py-lineno"> 325</tt> <tt class="py-line"> <tt class="py-name">nColumns</tt> <tt class="py-op">=</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt id="link-79" class="py-name"><a title="fabio.TiffIO.TAG_NUMBER_OF_COLUMNS" class="py-name" href="#" onclick="return doclink('link-79', 'TAG_NUMBER_OF_COLUMNS', 'link-4');">T [...]
-<a name="L326"></a><tt class="py-lineno"> 326</tt> <tt class="py-line"> <tt class="py-name">nRows</tt> <tt class="py-op">=</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt id="link-80" class="py-name"><a title="fabio.TiffIO.TAG_NUMBER_OF_ROWS" class="py-name" href="#" onclick="return doclink('link-80', 'TAG_NUMBER_OF_ROWS', 'link-5');">TAG_NUMBER [...]
-<a name="L327"></a><tt class="py-lineno"> 327</tt> <tt class="py-line"> </tt>
-<a name="L328"></a><tt class="py-lineno"> 328</tt> <tt class="py-line"> <tt class="py-comment">#bits per sample</tt> </tt>
-<a name="L329"></a><tt class="py-lineno"> 329</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt id="link-81" class="py-name"><a title="fabio.TiffIO.TAG_BITS_PER_SAMPLE" class="py-name" href="#" onclick="return doclink('link-81', 'TAG_BITS_PER_SAMPLE', 'link-6');">TAG_BITS_PER_SAMPLE</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L330"></a><tt class="py-lineno"> 330</tt> <tt class="py-line"> <tt class="py-name">nBits</tt> <tt class="py-op">=</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt> </tt>
-<a name="L331"></a><tt class="py-lineno"> 331</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt> <tt class="py-op">!=</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L332"></a><tt class="py-lineno"> 332</tt> <tt class="py-line"> <tt class="py-comment">#this happens with RGB and friends, nBits is not a single value</tt> </tt>
-<a name="L333"></a><tt class="py-lineno"> 333</tt> <tt class="py-line"> <tt class="py-name">nBits</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name" targets="Method fabio.TiffIO.TiffIO._readIFDEntry()=fabio.TiffIO.TiffIO-class.html#_readIFDEntry"><a title="fabio.TiffIO.TiffIO._readIFDEntry" class="py-name" href="#" onclick="return doclink('link-82', '_readIFDEntry', 'link-82');">_readIFDEntry</a></tt><tt class=" [...]
-<a name="L334"></a><tt class="py-lineno"> 334</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">)</tt> </tt>
-<a name="L335"></a><tt class="py-lineno"> 335</tt> <tt class="py-line"> </tt>
-<a name="L336"></a><tt class="py-lineno"> 336</tt> <tt class="py-line"> </tt>
-<a name="L337"></a><tt class="py-lineno"> 337</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-84" class="py-name"><a title="fabio.TiffIO.TAG_COLORMAP" class="py-name" href="#" onclick="return doclink('link-84', 'TAG_COLORMAP', 'link-15');">TAG_COLORMAP</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L338"></a><tt class="py-lineno"> 338</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt id="link-85" class="py-name"><a title="fabio.TiffIO.TAG_COLORMAP" class="py-name" href="#" onclick="return doclink('link-85', 'TAG_COLORMAP', 'link-15');">TAG_COLORMAP</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L339"></a><tt class="py-lineno"> 339</tt> <tt class="py-line"> <tt class="py-name">tmpColormap</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="fabio.TiffIO.TiffIO._readIFDEntry" class="py-name" href="#" onclick="return doclink('link-86', '_readIFDEntry', 'link-82');">_readIFDEntry</a></tt><tt class="py-op">(</tt><tt id="link-87" class="py-name"><a title="fabio.TiffIO.TAG_COLORMAP" class="py [...]
-<a name="L340"></a><tt class="py-lineno"> 340</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">)</tt> </tt>
-<a name="L341"></a><tt class="py-lineno"> 341</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">max</tt><tt class="py-op">(</tt><tt class="py-name">tmpColormap</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">255</tt><tt class="py-op">:</tt> </tt>
-<a name="L342"></a><tt class="py-lineno"> 342</tt> <tt class="py-line"> <tt class="py-name">tmpColormap</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-name">tmpColormap</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L343"></a><tt class="py-lineno"> 343</tt> <tt class="py-line"> <tt class="py-name">tmpColormap</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">tmpColormap</tt> <tt class="py-op">/</tt> <tt class="py-number">256.</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">)</tt> </tt>
-<a name="L344"></a><tt class="py-lineno"> 344</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L345"></a><tt class="py-lineno"> 345</tt> <tt class="py-line"> <tt class="py-name">tmpColormap</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-name">tmpColormap</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">)</tt> </tt>
-<a name="L346"></a><tt class="py-lineno"> 346</tt> <tt class="py-line"> <tt class="py-name">tmpColormap</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-number">3</tt><tt class="py-op">,</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
-<a name="L347"></a><tt class="py-lineno"> 347</tt> <tt class="py-line"> <tt class="py-name">colormap</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">tmpColormap</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <t [...]
-<a name="L348"></a><tt class="py-lineno"> 348</tt> <tt class="py-line"> <tt class="py-name">colormap</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">tmpColormap</tt><tt class="py-op">.</tt><tt class="py-name">T</tt> </tt>
-<a name="L349"></a><tt class="py-lineno"> 349</tt> <tt class="py-line"> <tt class="py-name">tmpColormap</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L350"></a><tt class="py-lineno"> 350</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L351"></a><tt class="py-lineno"> 351</tt> <tt class="py-line"> <tt class="py-name">colormap</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L352"></a><tt class="py-lineno"> 352</tt> <tt class="py-line"> </tt>
-<a name="L353"></a><tt class="py-lineno"> 353</tt> <tt class="py-line"> <tt class="py-comment">#sample format</tt> </tt>
-<a name="L354"></a><tt class="py-lineno"> 354</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-88" class="py-name"><a title="fabio.TiffIO.TAG_SAMPLE_FORMAT" class="py-name" href="#" onclick="return doclink('link-88', 'TAG_SAMPLE_FORMAT', 'link-16');">TAG_SAMPLE_FORMAT</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L355"></a><tt class="py-lineno"> 355</tt> <tt class="py-line"> <tt class="py-name">sampleFormat</tt> <tt class="py-op">=</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt id="link-89" class="py-name"><a title="fabio.TiffIO.TAG_SAMPLE_FORMAT" class="py-name" href="#" onclick="return doclink('link-89', 'TAG_SAMPLE_FORMAT', 'link-16');"> [...]
-<a name="L356"></a><tt class="py-lineno"> 356</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L357"></a><tt class="py-lineno"> 357</tt> <tt class="py-line"> <tt class="py-comment">#set to unknown</tt> </tt>
-<a name="L358"></a><tt class="py-lineno"> 358</tt> <tt class="py-line"> <tt class="py-name">sampleFormat</tt> <tt class="py-op">=</tt> <tt id="link-90" class="py-name"><a title="fabio.TiffIO.SAMPLE_FORMAT_VOID" class="py-name" href="#" onclick="return doclink('link-90', 'SAMPLE_FORMAT_VOID', 'link-22');">SAMPLE_FORMAT_VOID</a></tt> </tt>
-<a name="L359"></a><tt class="py-lineno"> 359</tt> <tt class="py-line"> </tt>
-<a name="L360"></a><tt class="py-lineno"> 360</tt> <tt class="py-line"> <tt class="py-comment"># compression</tt> </tt>
-<a name="L361"></a><tt class="py-lineno"> 361</tt> <tt class="py-line"> <tt id="link-91" class="py-name" targets="Module fabio.compression=fabio.compression-module.html"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-91', 'compression', 'link-91');">compression</a></tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L362"></a><tt class="py-lineno"> 362</tt> <tt class="py-line"> <tt class="py-name">compression_type</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L363"></a><tt class="py-lineno"> 363</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-92" class="py-name"><a title="fabio.TiffIO.TAG_COMPRESSION" class="py-name" href="#" onclick="return doclink('link-92', 'TAG_COMPRESSION', 'link-8');">TAG_COMPRESSION</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L364"></a><tt class="py-lineno"> 364</tt> <tt class="py-line"> <tt class="py-name">compression_type</tt> <tt class="py-op">=</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt id="link-93" class="py-name"><a title="fabio.TiffIO.TAG_COMPRESSION" class="py-name" href="#" onclick="return doclink('link-93', 'TAG_COMPRESSION', 'link-8');">T [...]
-<a name="L365"></a><tt class="py-lineno"> 365</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">compression_type</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L366"></a><tt class="py-lineno"> 366</tt> <tt class="py-line"> <tt id="link-94" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-94', 'compression', 'link-91');">compression</a></tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L367"></a><tt class="py-lineno"> 367</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L368"></a><tt class="py-lineno"> 368</tt> <tt class="py-line"> <tt id="link-95" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-95', 'compression', 'link-91');">compression</a></tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L369"></a><tt class="py-lineno"> 369</tt> <tt class="py-line"> </tt>
-<a name="L370"></a><tt class="py-lineno"> 370</tt> <tt class="py-line"> <tt class="py-comment">#photometric interpretation</tt> </tt>
-<a name="L371"></a><tt class="py-lineno"> 371</tt> <tt class="py-line"> <tt class="py-name">interpretation</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L372"></a><tt class="py-lineno"> 372</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-96" class="py-name"><a title="fabio.TiffIO.TAG_PHOTOMETRIC_INTERPRETATION" class="py-name" href="#" onclick="return doclink('link-96', 'TAG_PHOTOMETRIC_INTERPRETATION', 'link-7');">TAG_PHOTOMETRIC_INTERPRETATION</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L373"></a><tt class="py-lineno"> 373</tt> <tt class="py-line"> <tt class="py-name">interpretation</tt> <tt class="py-op">=</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">[</tt><tt class="py-name">tagIDList</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt id="link-97" class="py-name"><a title="fabio.TiffIO.TAG_PHOTOMETRIC_INTERPRETATION" class="py-name" href="#" onclick="return doclink('link-97', 'TAG_PHOTOMETRIC_IN [...]
-<a name="L374"></a><tt class="py-lineno"> 374</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L375"></a><tt class="py-lineno"> 375</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"WARNING: Non standard TIFF. Photometric interpretation TAG missing"</tt><tt class="py-op">)</tt> </tt>
-<a name="L376"></a><tt class="py-lineno"> 376</tt> <tt class="py-line"> <tt class="py-name">helpString</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L377"></a><tt class="py-lineno"> 377</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-98" class="py-name" targets="Variable fabio.version=fabio-module.html#version"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-98', 'version', 'link-98');">version</a></tt> <tt class="py-op">></tt> <tt class="py-string">'2.6'</tt><tt class="py-op">:</tt> </tt>
-<a name="L378"></a><tt class="py-lineno"> 378</tt> <tt class="py-line"> <tt class="py-name">helpString</tt> <tt class="py-op">=</tt> <tt class="py-name">eval</tt><tt class="py-op">(</tt><tt class="py-string">'b""'</tt><tt class="py-op">)</tt> </tt>
-<a name="L379"></a><tt class="py-lineno"> 379</tt> <tt class="py-line"> </tt>
-<a name="L380"></a><tt class="py-lineno"> 380</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-99" class="py-name"><a title="fabio.TiffIO.TAG_IMAGE_DESCRIPTION" class="py-name" href="#" onclick="return doclink('link-99', 'TAG_IMAGE_DESCRIPTION', 'link-9');">TAG_IMAGE_DESCRIPTION</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L381"></a><tt class="py-lineno"> 381</tt> <tt class="py-line"> <tt class="py-name">imageDescription</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="fabio.TiffIO.TiffIO._readIFDEntry" class="py-name" href="#" onclick="return doclink('link-100', '_readIFDEntry', 'link-82');">_readIFDEntry</a></tt><tt class="py-op">(</tt><tt id="link-101" class="py-name"><a title="fabio.TiffIO.TAG_IMAGE_DESCR [...]
-<a name="L382"></a><tt class="py-lineno"> 382</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">)</tt> </tt>
-<a name="L383"></a><tt class="py-lineno"> 383</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">imageDescription</tt><tt class="py-op">)</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">type< [...]
-<a name="L384"></a><tt class="py-lineno"> 384</tt> <tt class="py-line"> <tt class="py-name">imageDescription</tt> <tt class="py-op">=</tt> <tt class="py-name">helpString</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">imageDescription</tt><tt class="py-op">)</tt> </tt>
-<a name="L385"></a><tt class="py-lineno"> 385</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L386"></a><tt class="py-lineno"> 386</tt> <tt class="py-line"> <tt class="py-name">imageDescription</tt> <tt class="py-op">=</tt> <tt class="py-string">"%d/%d"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nImage</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt id="link-102" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-102', 'len', [...]
-<a name="L387"></a><tt class="py-lineno"> 387</tt> <tt class="py-line"> </tt>
-<a name="L388"></a><tt class="py-lineno"> 388</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-103', 'version', 'link-98');">version</a></tt> <tt class="py-op"><</tt> <tt class="py-string">'3.0'</tt><tt class="py-op">:</tt> </tt>
-<a name="L389"></a><tt class="py-lineno"> 389</tt> <tt class="py-line"> <tt class="py-name">defaultSoftware</tt> <tt class="py-op">=</tt> <tt class="py-string">"Unknown Software"</tt> </tt>
-<a name="L390"></a><tt class="py-lineno"> 390</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L391"></a><tt class="py-lineno"> 391</tt> <tt class="py-line"> <tt class="py-name">defaultSoftware</tt> <tt class="py-op">=</tt> <tt class="py-name">bytes</tt><tt class="py-op">(</tt><tt class="py-string">"Unknown Software"</tt><tt class="py-op">,</tt> </tt>
-<a name="L392"></a><tt class="py-lineno"> 392</tt> <tt class="py-line"> <tt class="py-name">encoding</tt><tt class="py-op">=</tt><tt class="py-string">'utf-8'</tt><tt class="py-op">)</tt> </tt>
-<a name="L393"></a><tt class="py-lineno"> 393</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-104" class="py-name"><a title="fabio.TiffIO.TAG_SOFTWARE" class="py-name" href="#" onclick="return doclink('link-104', 'TAG_SOFTWARE', 'link-13');">TAG_SOFTWARE</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L394"></a><tt class="py-lineno"> 394</tt> <tt class="py-line"> <tt class="py-name">software</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-105" class="py-name"><a title="fabio.TiffIO.TiffIO._readIFDEntry" class="py-name" href="#" onclick="return doclink('link-105', '_readIFDEntry', 'link-82');">_readIFDEntry</a></tt><tt class="py-op">(</tt><tt id="link-106" class="py-name"><a title="fabio.TiffIO.TAG_SOFTWARE" class="py [...]
-<a name="L395"></a><tt class="py-lineno"> 395</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">)</tt> </tt>
-<a name="L396"></a><tt class="py-lineno"> 396</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">software</tt><tt class="py-op">)</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">type</tt><tt [...]
-<a name="L397"></a><tt class="py-lineno"> 397</tt> <tt class="py-line"> <tt class="py-name">software</tt> <tt class="py-op">=</tt> <tt class="py-name">helpString</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">software</tt><tt class="py-op">)</tt> </tt>
-<a name="L398"></a><tt class="py-lineno"> 398</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L399"></a><tt class="py-lineno"> 399</tt> <tt class="py-line"> <tt class="py-name">software</tt> <tt class="py-op">=</tt> <tt class="py-name">defaultSoftware</tt> </tt>
-<a name="L400"></a><tt class="py-lineno"> 400</tt> <tt class="py-line"> </tt>
-<a name="L401"></a><tt class="py-lineno"> 401</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">software</tt> <tt class="py-op">==</tt> <tt class="py-name">defaultSoftware</tt><tt class="py-op">:</tt> </tt>
-<a name="L402"></a><tt class="py-lineno"> 402</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L403"></a><tt class="py-lineno"> 403</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-107" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-107', 'version', 'link-98');">version</a></tt> <tt class="py-op"><</tt> <tt class="py-string">'3.0'</tt><tt class="py-op">:</tt> </tt>
-<a name="L404"></a><tt class="py-lineno"> 404</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">imageDescription</tt><tt class="py-op">.</tt><tt class="py-name">upper</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-string">"IMAGEJ"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L405"></a><tt class="py-lineno"> 405</tt> <tt class="py-line"> <tt class="py-name">software</tt> <tt class="py-op">=</tt> <tt class="py-name">imageDescription</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">"="</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L406"></a><tt class="py-lineno"> 406</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L407"></a><tt class="py-lineno"> 407</tt> <tt class="py-line"> <tt class="py-name">tmpString</tt> <tt class="py-op">=</tt> <tt class="py-name">imageDescription</tt><tt class="py-op">.</tt><tt class="py-name">decode</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L408"></a><tt class="py-lineno"> 408</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">tmpString</tt><tt class="py-op">.</tt><tt class="py-name">upper</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-string">"IMAGEJ"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L409"></a><tt class="py-lineno"> 409</tt> <tt class="py-line"> <tt class="py-name">software</tt> <tt class="py-op">=</tt> <tt class="py-name">bytes</tt><tt class="py-op">(</tt><tt class="py-name">tmpString</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">"="</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L410"></a><tt class="py-lineno"> 410</tt> <tt class="py-line"> <tt class="py-name">encoding</tt><tt class="py-op">=</tt><tt class="py-string">'utf-8'</tt><tt class="py-op">)</tt> </tt>
-<a name="L411"></a><tt class="py-lineno"> 411</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L412"></a><tt class="py-lineno"> 412</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L413"></a><tt class="py-lineno"> 413</tt> <tt class="py-line"> </tt>
-<a name="L414"></a><tt class="py-lineno"> 414</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-108" class="py-name"><a title="fabio.TiffIO.TAG_DATE" class="py-name" href="#" onclick="return doclink('link-108', 'TAG_DATE', 'link-14');">TAG_DATE</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L415"></a><tt class="py-lineno"> 415</tt> <tt class="py-line"> <tt class="py-name">date</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-109" class="py-name"><a title="fabio.TiffIO.TiffIO._readIFDEntry" class="py-name" href="#" onclick="return doclink('link-109', '_readIFDEntry', 'link-82');">_readIFDEntry</a></tt><tt class="py-op">(</tt><tt id="link-110" class="py-name"><a title="fabio.TiffIO.TAG_DATE" class="py-name" h [...]
-<a name="L416"></a><tt class="py-lineno"> 416</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">)</tt> </tt>
-<a name="L417"></a><tt class="py-lineno"> 417</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">date</tt><tt class="py-op">)</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">type</tt><tt clas [...]
-<a name="L418"></a><tt class="py-lineno"> 418</tt> <tt class="py-line"> <tt class="py-name">date</tt> <tt class="py-op">=</tt> <tt class="py-name">helpString</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">date</tt><tt class="py-op">)</tt> </tt>
-<a name="L419"></a><tt class="py-lineno"> 419</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L420"></a><tt class="py-lineno"> 420</tt> <tt class="py-line"> <tt class="py-name">date</tt> <tt class="py-op">=</tt> <tt class="py-string">"Unknown Date"</tt> </tt>
-<a name="L421"></a><tt class="py-lineno"> 421</tt> <tt class="py-line"> </tt>
-<a name="L422"></a><tt class="py-lineno"> 422</tt> <tt class="py-line"> <tt class="py-name">stripOffsets</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-111" class="py-name"><a title="fabio.TiffIO.TiffIO._readIFDEntry" class="py-name" href="#" onclick="return doclink('link-111', '_readIFDEntry', 'link-82');">_readIFDEntry</a></tt><tt class="py-op">(</tt><tt id="link-112" class="py-name"><a title="fabio.TiffIO.TAG_STRIP_OFFSETS" clas [...]
-<a name="L423"></a><tt class="py-lineno"> 423</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">)</tt> </tt>
-<a name="L424"></a><tt class="py-lineno"> 424</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-113" class="py-name"><a title="fabio.TiffIO.TAG_ROWS_PER_STRIP" class="py-name" href="#" onclick="return doclink('link-113', 'TAG_ROWS_PER_STRIP', 'link-11');">TAG_ROWS_PER_STRIP</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L425"></a><tt class="py-lineno"> 425</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-114" class="py-name"><a title="fabio.TiffIO.TiffIO._readIFDEntry" class="py-name" href="#" onclick="return doclink('link-114', '_readIFDEntry', 'link-82');">_readIFDEntry</a></tt><tt class="py-op">(</tt><tt id="link-115" class="py-name"><a title="fabio.TiffIO.TAG_ROWS_PER_STRIP" [...]
-<a name="L426"></a><tt class="py-lineno"> 426</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L427"></a><tt class="py-lineno"> 427</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L428"></a><tt class="py-lineno"> 428</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">nRows</tt> </tt>
-<a name="L429"></a><tt class="py-lineno"> 429</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"WARNING: Non standard TIFF. Rows per strip TAG missing"</tt><tt class="py-op">)</tt> </tt>
-<a name="L430"></a><tt class="py-lineno"> 430</tt> <tt class="py-line"> </tt>
-<a name="L431"></a><tt class="py-lineno"> 431</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-116" class="py-name"><a title="fabio.TiffIO.TAG_STRIP_BYTE_COUNTS" class="py-name" href="#" onclick="return doclink('link-116', 'TAG_STRIP_BYTE_COUNTS', 'link-12');">TAG_STRIP_BYTE_COUNTS</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">tagIDList</tt><tt class="py-op">:</tt> </tt>
-<a name="L432"></a><tt class="py-lineno"> 432</tt> <tt class="py-line"> <tt class="py-name">stripByteCounts</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-117" class="py-name"><a title="fabio.TiffIO.TiffIO._readIFDEntry" class="py-name" href="#" onclick="return doclink('link-117', '_readIFDEntry', 'link-82');">_readIFDEntry</a></tt><tt class="py-op">(</tt><tt id="link-118" class="py-name"><a title="fabio.TiffIO.TAG_STRIP_BYTE_C [...]
-<a name="L433"></a><tt class="py-lineno"> 433</tt> <tt class="py-line"> <tt class="py-name">tagIDList</tt><tt class="py-op">,</tt> <tt class="py-name">fieldTypeList</tt><tt class="py-op">,</tt> <tt class="py-name">nValuesList</tt><tt class="py-op">,</tt> <tt class="py-name">valueOffsetList</tt><tt class="py-op">)</tt> </tt>
-<a name="L434"></a><tt class="py-lineno"> 434</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L435"></a><tt class="py-lineno"> 435</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"WARNING: Non standard TIFF. Strip byte counts TAG missing"</tt><tt class="py-op">)</tt> </tt>
-<a name="L436"></a><tt class="py-lineno"> 436</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt> <tt class="py-string">'index'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L437"></a><tt class="py-lineno"> 437</tt> <tt class="py-line"> <tt class="py-name">expectedSum</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L438"></a><tt class="py-lineno"> 438</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">n</tt> <tt class="py-keyword">in</tt> <tt class="py-name">nBits</tt><tt class="py-op">:</tt> </tt>
-<a name="L439"></a><tt class="py-lineno"> 439</tt> <tt class="py-line"> <tt class="py-name">expectedSum</tt> <tt class="py-op">+=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">*</tt> <tt class="py-name">nColumns</tt> <tt class="py-op">*</tt> <tt class="py-name">n</tt> <tt class="py-op">/</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt> </tt>
-<a name="L440"></a><tt class="py-lineno"> 440</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L441"></a><tt class="py-lineno"> 441</tt> <tt class="py-line"> <tt class="py-name">expectedSum</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">*</tt> <tt class="py-name">nColumns</tt> <tt class="py-op">*</tt> <tt class="py-name">nBits</tt> <tt class="py-op">/</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt> </tt>
-<a name="L442"></a><tt class="py-lineno"> 442</tt> <tt class="py-line"> <tt class="py-name">stripByteCounts</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">expectedSum</tt><tt class="py-op">]</tt> </tt>
-<a name="L443"></a><tt class="py-lineno"> 443</tt> <tt class="py-line"> </tt>
-<a name="L444"></a><tt class="py-lineno"> 444</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">close</tt><tt class="py-op">:</tt> </tt>
-<a name="L445"></a><tt class="py-lineno"> 445</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-119" class="py-name"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsClosed" class="py-name" href="#" onclick="return doclink('link-119', '__makeSureFileIsClosed', 'link-38');">__makeSureFileIsClosed</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L446"></a><tt class="py-lineno"> 446</tt> <tt class="py-line"> </tt>
-<a name="L447"></a><tt class="py-lineno"> 447</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_forceMonoOutput</tt> <tt class="py-keyword">and</tt> <tt class="py-op">(</tt><tt class="py-name">interpretation</tt> <tt class="py-op">></tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L448"></a><tt class="py-lineno"> 448</tt> <tt class="py-line"> <tt class="py-comment">#color image but asked monochrome output</tt> </tt>
-<a name="L449"></a><tt class="py-lineno"> 449</tt> <tt class="py-line"> <tt class="py-name">nBits</tt> <tt class="py-op">=</tt> <tt class="py-number">32</tt> </tt>
-<a name="L450"></a><tt class="py-lineno"> 450</tt> <tt class="py-line"> <tt class="py-name">colormap</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L451"></a><tt class="py-lineno"> 451</tt> <tt class="py-line"> <tt class="py-name">sampleFormat</tt> <tt class="py-op">=</tt> <tt id="link-120" class="py-name"><a title="fabio.TiffIO.SAMPLE_FORMAT_FLOAT" class="py-name" href="#" onclick="return doclink('link-120', 'SAMPLE_FORMAT_FLOAT', 'link-21');">SAMPLE_FORMAT_FLOAT</a></tt> </tt>
-<a name="L452"></a><tt class="py-lineno"> 452</tt> <tt class="py-line"> <tt class="py-name">interpretation</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L453"></a><tt class="py-lineno"> 453</tt> <tt class="py-line"> <tt class="py-comment">#we cannot rely on any cache in this case</tt> </tt>
-<a name="L454"></a><tt class="py-lineno"> 454</tt> <tt class="py-line"> <tt class="py-name">useInfoCache</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L455"></a><tt class="py-lineno"> 455</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-121" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-121', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L456"></a><tt class="py-lineno"> 456</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"FORCED MONO"</tt><tt class="py-op">)</tt> </tt>
-<a name="L457"></a><tt class="py-lineno"> 457</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L458"></a><tt class="py-lineno"> 458</tt> <tt class="py-line"> <tt class="py-name">useInfoCache</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L459"></a><tt class="py-lineno"> 459</tt> <tt class="py-line"> </tt>
-<a name="L460"></a><tt class="py-lineno"> 460</tt> <tt class="py-line"> <tt class="py-name">info</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L461"></a><tt class="py-lineno"> 461</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nRows"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">nRows</tt> </tt>
-<a name="L462"></a><tt class="py-lineno"> 462</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nColumns"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">nColumns</tt> </tt>
-<a name="L463"></a><tt class="py-lineno"> 463</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nBits"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">nBits</tt> </tt>
-<a name="L464"></a><tt class="py-lineno"> 464</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"compression"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-122" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-122', 'compression', 'link-91');">compression</a></tt> </tt>
-<a name="L465"></a><tt class="py-lineno"> 465</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"compression_type"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">compression_type</tt> </tt>
-<a name="L466"></a><tt class="py-lineno"> 466</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"imageDescription"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">imageDescription</tt> </tt>
-<a name="L467"></a><tt class="py-lineno"> 467</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">stripOffsets</tt> <tt class="py-comment">#This contains the file offsets to the data positions</tt> </tt>
-<a name="L468"></a><tt class="py-lineno"> 468</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"rowsPerStrip"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">rowsPerStrip</tt> </tt>
-<a name="L469"></a><tt class="py-lineno"> 469</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripByteCounts"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">stripByteCounts</tt> <tt class="py-comment">#bytes in strip since I do not support compression</tt> </tt>
-<a name="L470"></a><tt class="py-lineno"> 470</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"software"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">software</tt> </tt>
-<a name="L471"></a><tt class="py-lineno"> 471</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"date"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">date</tt> </tt>
-<a name="L472"></a><tt class="py-lineno"> 472</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"colormap"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">colormap</tt> </tt>
-<a name="L473"></a><tt class="py-lineno"> 473</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"sampleFormat"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">sampleFormat</tt> </tt>
-<a name="L474"></a><tt class="py-lineno"> 474</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"photometricInterpretation"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">interpretation</tt> </tt>
-<a name="L475"></a><tt class="py-lineno"> 475</tt> <tt class="py-line"> <tt class="py-name">infoDict</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L476"></a><tt class="py-lineno"> 476</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-123" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-123', 'version', 'link-98');">version</a></tt> <tt class="py-op"><</tt> <tt class="py-string">'3.0'</tt><tt class="py-op">:</tt> </tt>
-<a name="L477"></a><tt class="py-lineno"> 477</tt> <tt class="py-line"> <tt class="py-name">testString</tt> <tt class="py-op">=</tt> <tt class="py-string">'PyMca'</tt> </tt>
-<a name="L478"></a><tt class="py-lineno"> 478</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L479"></a><tt class="py-lineno"> 479</tt> <tt class="py-line"> <tt class="py-name">testString</tt> <tt class="py-op">=</tt> <tt class="py-name">eval</tt><tt class="py-op">(</tt><tt class="py-string">'b"PyMca"'</tt><tt class="py-op">)</tt> </tt>
-<a name="L480"></a><tt class="py-lineno"> 480</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">software</tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-name">testString</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L481"></a><tt class="py-lineno"> 481</tt> <tt class="py-line"> <tt class="py-comment">#str to make sure python 2.x sees it as string and not unicode</tt> </tt>
-<a name="L482"></a><tt class="py-lineno"> 482</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-124', 'version', 'link-98');">version</a></tt> <tt class="py-op"><</tt> <tt class="py-string">'3.0'</tt><tt class="py-op">:</tt> </tt>
-<a name="L483"></a><tt class="py-lineno"> 483</tt> <tt class="py-line"> <tt class="py-name">descriptionString</tt> <tt class="py-op">=</tt> <tt class="py-name">imageDescription</tt> </tt>
-<a name="L484"></a><tt class="py-lineno"> 484</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L485"></a><tt class="py-lineno"> 485</tt> <tt class="py-line"> <tt class="py-name">descriptionString</tt> <tt class="py-op">=</tt> <tt id="link-125" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-125', 'str', 'link-125');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">imageDescription</tt><tt class="py-op">.</tt><tt class="py-name">decode</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L486"></a><tt class="py-lineno"> 486</tt> <tt class="py-line"> <tt class="py-comment">#interpret the image description in terms of supplied</tt> </tt>
-<a name="L487"></a><tt class="py-lineno"> 487</tt> <tt class="py-line"> <tt class="py-comment">#information at writing time</tt> </tt>
-<a name="L488"></a><tt class="py-lineno"> 488</tt> <tt class="py-line"> <tt class="py-name">items</tt> <tt class="py-op">=</tt> <tt class="py-name">descriptionString</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">'='</tt><tt class="py-op">)</tt> </tt>
-<a name="L489"></a><tt class="py-lineno"> 489</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-126" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-126', 'i', 'link-53');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt id="link-127" class="py-name"><a title="fabio.file_series.file_series.len" class= [...]
-<a name="L490"></a><tt class="py-lineno"> 490</tt> <tt class="py-line"> <tt id="link-128" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-128', 'key', 'link-128');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"%s"</tt> <tt class="py-op">%</tt> <tt class="py-name">items</tt><tt class="py-op">[</tt><tt id="link-129" class="py-name"> [...]
-<a name="L491"></a><tt class="py-lineno"> 491</tt> <tt class="py-line"> <tt class="py-comment">#get rid of the \n at the end of the value </tt> </tt>
-<a name="L492"></a><tt class="py-lineno"> 492</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s"</tt> <tt class="py-op">%</tt> <tt class="py-name">items</tt><tt class="py-op">[</tt><tt id="link-130" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-130', 'i', 'link-53');">i</a></tt> <tt class="py-op">*</tt> <tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt [...]
-<a name="L493"></a><tt class="py-lineno"> 493</tt> <tt class="py-line"> <tt class="py-name">infoDict</tt><tt class="py-op">[</tt><tt id="link-131" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-131', 'key', 'link-128');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">value</tt> </tt>
-<a name="L494"></a><tt class="py-lineno"> 494</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">'info'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infoDict</tt> </tt>
-<a name="L495"></a><tt class="py-lineno"> 495</tt> <tt class="py-line"> </tt>
-<a name="L496"></a><tt class="py-lineno"> 496</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_maxImageCacheLength</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-name">useInfoCache</tt><tt class="py-op">:</tt> </tt>
-<a name="L497"></a><tt class="py-lineno"> 497</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCacheIndex</tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">nImage</tt><tt class="py-op">)</tt> </tt>
-<a name="L498"></a><tt class="py-lineno"> 498</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCache</tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">)</tt> </tt>
-<a name="L499"></a><tt class="py-lineno"> 499</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-132" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-132', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCacheIndex</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-name">self</tt>< [...]
-<a name="L500"></a><tt class="py-lineno"> 500</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCacheIndex</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCacheIndex</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_maxImageCacheLength</tt><tt class="py-op">]</tt> </tt>
-<a name="L501"></a><tt class="py-lineno"> 501</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCache</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageInfoCache</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_maxImageCacheLength</tt><tt class="py-op">]</tt> </tt>
-<a name="L502"></a><tt class="py-lineno"> 502</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">info</tt> </tt>
-</div><a name="L503"></a><tt class="py-lineno"> 503</tt> <tt class="py-line"> </tt>
-<a name="TiffIO._readImage"></a><div id="TiffIO._readImage-def"><a name="L504"></a><tt class="py-lineno"> 504</tt> <a class="py-toggle" href="#" id="TiffIO._readImage-toggle" onclick="return toggle('TiffIO._readImage');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#_readImage">_readImage</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">nImage</tt><tt class="py [...]
-</div><div id="TiffIO._readImage-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO._readImage-expanded"><a name="L505"></a><tt class="py-lineno"> 505</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-133" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-133', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L506"></a><tt class="py-lineno"> 506</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Reading image %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">nImage</tt><tt class="py-op">)</tt> </tt>
-<a name="L507"></a><tt class="py-lineno"> 507</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'close'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">kw</tt><tt class="py-op">:</tt> </tt>
-<a name="L508"></a><tt class="py-lineno"> 508</tt> <tt class="py-line"> <tt class="py-name">close</tt> <tt class="py-op">=</tt> <tt class="py-name">kw</tt><tt class="py-op">[</tt><tt class="py-string">'close'</tt><tt class="py-op">]</tt> </tt>
-<a name="L509"></a><tt class="py-lineno"> 509</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L510"></a><tt class="py-lineno"> 510</tt> <tt class="py-line"> <tt class="py-name">close</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L511"></a><tt class="py-lineno"> 511</tt> <tt class="py-line"> <tt class="py-name">rowMin</tt> <tt class="py-op">=</tt> <tt class="py-name">kw</tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'rowMin'</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
-<a name="L512"></a><tt class="py-lineno"> 512</tt> <tt class="py-line"> <tt class="py-name">rowMax</tt> <tt class="py-op">=</tt> <tt class="py-name">kw</tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">'rowMax'</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
-<a name="L513"></a><tt class="py-lineno"> 513</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nImage</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCacheIndex</tt><tt class="py-op">:</tt> </tt>
-<a name="L514"></a><tt class="py-lineno"> 514</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-134" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-134', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L515"></a><tt class="py-lineno"> 515</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Reading image data from cache"</tt><tt class="py-op">)</tt> </tt>
-<a name="L516"></a><tt class="py-lineno"> 516</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCache</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCacheIndex</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt class="py-name">nImage</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L517"></a><tt class="py-lineno"> 517</tt> <tt class="py-line"> </tt>
-<a name="L518"></a><tt class="py-lineno"> 518</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-135" class="py-name"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsOpen" class="py-name" href="#" onclick="return doclink('link-135', '__makeSureFileIsOpen', 'link-36');">__makeSureFileIsOpen</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L519"></a><tt class="py-lineno"> 519</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_forceMonoOutput</tt><tt class="py-op">:</tt> </tt>
-<a name="L520"></a><tt class="py-lineno"> 520</tt> <tt class="py-line"> <tt class="py-name">oldMono</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L521"></a><tt class="py-lineno"> 521</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L522"></a><tt class="py-lineno"> 522</tt> <tt class="py-line"> <tt class="py-name">oldMono</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L523"></a><tt class="py-lineno"> 523</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L524"></a><tt class="py-lineno"> 524</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_forceMonoOutput</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L525"></a><tt class="py-lineno"> 525</tt> <tt class="py-line"> <tt class="py-name">info</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-136" class="py-name"><a title="fabio.TiffIO.TiffIO._readInfo" class="py-name" href="#" onclick="return doclink('link-136', '_readInfo', 'link-75');">_readInfo</a></tt><tt class="py-op">(</tt><tt class="py-name">nImage</tt><tt class="py-op">,</tt> <tt class="py-name">close</tt><tt class= [...]
-<a name="L526"></a><tt class="py-lineno"> 526</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_forceMonoOutput</tt> <tt class="py-op">=</tt> <tt class="py-name">oldMono</tt> </tt>
-<a name="L527"></a><tt class="py-lineno"> 527</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L528"></a><tt class="py-lineno"> 528</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_forceMonoOutput</tt> <tt class="py-op">=</tt> <tt class="py-name">oldMono</tt> </tt>
-<a name="L529"></a><tt class="py-lineno"> 529</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> </tt>
-<a name="L530"></a><tt class="py-lineno"> 530</tt> <tt class="py-line"> <tt id="link-137" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-137', 'compression', 'link-91');">compression</a></tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">'compression'</tt><tt class="py-op">]</tt> </tt>
-<a name="L531"></a><tt class="py-lineno"> 531</tt> <tt class="py-line"> <tt class="py-name">compression_type</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">'compression_type'</tt><tt class="py-op">]</tt> </tt>
-<a name="L532"></a><tt class="py-lineno"> 532</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-138" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-138', 'compression', 'link-91');">compression</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L533"></a><tt class="py-lineno"> 533</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">compression_type</tt> <tt class="py-op">!=</tt> <tt class="py-number">32773</tt><tt class="py-op">:</tt> </tt>
-<a name="L534"></a><tt class="py-lineno"> 534</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">(</tt><tt class="py-string">"Compressed TIFF images not supported except packbits"</tt><tt class="py-op">)</tt> </tt>
-<a name="L535"></a><tt class="py-lineno"> 535</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L536"></a><tt class="py-lineno"> 536</tt> <tt class="py-line"> <tt class="py-comment">#PackBits compression</tt> </tt>
-<a name="L537"></a><tt class="py-lineno"> 537</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-139" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-139', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L538"></a><tt class="py-lineno"> 538</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Using PackBits compression"</tt><tt class="py-op">)</tt> </tt>
-<a name="L539"></a><tt class="py-lineno"> 539</tt> <tt class="py-line"> </tt>
-<a name="L540"></a><tt class="py-lineno"> 540</tt> <tt class="py-line"> <tt class="py-name">interpretation</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"photometricInterpretation"</tt><tt class="py-op">]</tt> </tt>
-<a name="L541"></a><tt class="py-lineno"> 541</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">interpretation</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
-<a name="L542"></a><tt class="py-lineno"> 542</tt> <tt class="py-line"> <tt class="py-comment">#RGB</tt> </tt>
-<a name="L543"></a><tt class="py-lineno"> 543</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L544"></a><tt class="py-lineno"> 544</tt> <tt class="py-line"> <tt class="py-comment">#raise IOError("RGB Image. Only grayscale images supported")</tt> </tt>
-<a name="L545"></a><tt class="py-lineno"> 545</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">interpretation</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
-<a name="L546"></a><tt class="py-lineno"> 546</tt> <tt class="py-line"> <tt class="py-comment">#Palette Color Image</tt> </tt>
-<a name="L547"></a><tt class="py-lineno"> 547</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L548"></a><tt class="py-lineno"> 548</tt> <tt class="py-line"> <tt class="py-comment">#raise IOError("Palette-color Image. Only grayscale images supported")</tt> </tt>
-<a name="L549"></a><tt class="py-lineno"> 549</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">interpretation</tt> <tt class="py-op">></tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
-<a name="L550"></a><tt class="py-lineno"> 550</tt> <tt class="py-line"> <tt class="py-comment">#Palette Color Image</tt> </tt>
-<a name="L551"></a><tt class="py-lineno"> 551</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">(</tt><tt class="py-string">"Only grayscale images supported"</tt><tt class="py-op">)</tt> </tt>
-<a name="L552"></a><tt class="py-lineno"> 552</tt> <tt class="py-line"> </tt>
-<a name="L553"></a><tt class="py-lineno"> 553</tt> <tt class="py-line"> <tt class="py-name">nRows</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nRows"</tt><tt class="py-op">]</tt> </tt>
-<a name="L554"></a><tt class="py-lineno"> 554</tt> <tt class="py-line"> <tt class="py-name">nColumns</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nColumns"</tt><tt class="py-op">]</tt> </tt>
-<a name="L555"></a><tt class="py-lineno"> 555</tt> <tt class="py-line"> <tt class="py-name">nBits</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nBits"</tt><tt class="py-op">]</tt> </tt>
-<a name="L556"></a><tt class="py-lineno"> 556</tt> <tt class="py-line"> <tt class="py-name">colormap</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"colormap"</tt><tt class="py-op">]</tt> </tt>
-<a name="L557"></a><tt class="py-lineno"> 557</tt> <tt class="py-line"> <tt class="py-name">sampleFormat</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"sampleFormat"</tt><tt class="py-op">]</tt> </tt>
-<a name="L558"></a><tt class="py-lineno"> 558</tt> <tt class="py-line"> </tt>
-<a name="L559"></a><tt class="py-lineno"> 559</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowMin</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L560"></a><tt class="py-lineno"> 560</tt> <tt class="py-line"> <tt class="py-name">rowMin</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L561"></a><tt class="py-lineno"> 561</tt> <tt class="py-line"> </tt>
-<a name="L562"></a><tt class="py-lineno"> 562</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowMax</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L563"></a><tt class="py-lineno"> 563</tt> <tt class="py-line"> <tt class="py-name">rowMax</tt> <tt class="py-op">=</tt> <tt class="py-name">nRows</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt> </tt>
-<a name="L564"></a><tt class="py-lineno"> 564</tt> <tt class="py-line"> </tt>
-<a name="L565"></a><tt class="py-lineno"> 565</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowMin</tt> <tt class="py-op"><</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L566"></a><tt class="py-lineno"> 566</tt> <tt class="py-line"> <tt class="py-name">rowMin</tt> <tt class="py-op">=</tt> <tt class="py-name">nRows</tt> <tt class="py-op">-</tt> <tt class="py-name">rowMin</tt> </tt>
-<a name="L567"></a><tt class="py-lineno"> 567</tt> <tt class="py-line"> </tt>
-<a name="L568"></a><tt class="py-lineno"> 568</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowMax</tt> <tt class="py-op"><</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L569"></a><tt class="py-lineno"> 569</tt> <tt class="py-line"> <tt class="py-name">rowMax</tt> <tt class="py-op">=</tt> <tt class="py-name">nRows</tt> <tt class="py-op">-</tt> <tt class="py-name">rowMax</tt> </tt>
-<a name="L570"></a><tt class="py-lineno"> 570</tt> <tt class="py-line"> </tt>
-<a name="L571"></a><tt class="py-lineno"> 571</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowMax</tt> <tt class="py-op"><</tt> <tt class="py-name">rowMin</tt><tt class="py-op">:</tt> </tt>
-<a name="L572"></a><tt class="py-lineno"> 572</tt> <tt class="py-line"> <tt class="py-name">txt</tt> <tt class="py-op">=</tt> <tt class="py-string">"Max Row smaller than Min Row. Reverse selection not supported"</tt> </tt>
-<a name="L573"></a><tt class="py-lineno"> 573</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">NotImplemented</tt><tt class="py-op">(</tt><tt class="py-name">txt</tt><tt class="py-op">)</tt> </tt>
-<a name="L574"></a><tt class="py-lineno"> 574</tt> <tt class="py-line"> </tt>
-<a name="L575"></a><tt class="py-lineno"> 575</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowMin</tt> <tt class="py-op">>=</tt> <tt class="py-name">nRows</tt><tt class="py-op">:</tt> </tt>
-<a name="L576"></a><tt class="py-lineno"> 576</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IndexError</tt><tt class="py-op">(</tt><tt class="py-string">"Image only has %d rows"</tt> <tt class="py-op">%</tt> <tt class="py-name">nRows</tt><tt class="py-op">)</tt> </tt>
-<a name="L577"></a><tt class="py-lineno"> 577</tt> <tt class="py-line"> </tt>
-<a name="L578"></a><tt class="py-lineno"> 578</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowMax</tt> <tt class="py-op">>=</tt> <tt class="py-name">nRows</tt><tt class="py-op">:</tt> </tt>
-<a name="L579"></a><tt class="py-lineno"> 579</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IndexError</tt><tt class="py-op">(</tt><tt class="py-string">"Image only has %d rows"</tt> <tt class="py-op">%</tt> <tt class="py-name">nRows</tt><tt class="py-op">)</tt> </tt>
-<a name="L580"></a><tt class="py-lineno"> 580</tt> <tt class="py-line"> </tt>
-<a name="L581"></a><tt class="py-lineno"> 581</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sampleFormat</tt> <tt class="py-op">==</tt> <tt id="link-140" class="py-name"><a title="fabio.TiffIO.SAMPLE_FORMAT_FLOAT" class="py-name" href="#" onclick="return doclink('link-140', 'SAMPLE_FORMAT_FLOAT', 'link-21');">SAMPLE_FORMAT_FLOAT</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L582"></a><tt class="py-lineno"> 582</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nBits</tt> <tt class="py-op">==</tt> <tt class="py-number">32</tt><tt class="py-op">:</tt> </tt>
-<a name="L583"></a><tt class="py-lineno"> 583</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt> </tt>
-<a name="L584"></a><tt class="py-lineno"> 584</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">nBits</tt> <tt class="py-op">==</tt> <tt class="py-number">64</tt><tt class="py-op">:</tt> </tt>
-<a name="L585"></a><tt class="py-lineno"> 585</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt> </tt>
-<a name="L586"></a><tt class="py-lineno"> 586</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L587"></a><tt class="py-lineno"> 587</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">(</tt><tt class="py-string">"Unsupported number of bits for a float: %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">nBits</tt><tt class="py-op">)</tt> </tt>
-<a name="L588"></a><tt class="py-lineno"> 588</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">sampleFormat</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt id="link-141" class="py-name"><a title="fabio.TiffIO.SAMPLE_FORMAT_UINT" class="py-name" href="#" onclick="return doclink('link-141', 'SAMPLE_FORMAT_UINT', 'link-19');">SAMPLE_FORMAT_UINT</a></tt><tt class="py-op">,</tt> <tt id="link-142" class="py-name"><a title="fabio.TiffIO.SAMP [...]
-<a name="L589"></a><tt class="py-lineno"> 589</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nBits</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt><tt cla [...]
-<a name="L590"></a><tt class="py-lineno"> 590</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt> </tt>
-<a name="L591"></a><tt class="py-lineno"> 591</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">nBits</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">16</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">16</tt><tt class="py-op">,</tt> <tt class="py-number">16</tt><tt class="py-op">,</tt> <tt class="py-number">16</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt>< [...]
-<a name="L592"></a><tt class="py-lineno"> 592</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> </tt>
-<a name="L593"></a><tt class="py-lineno"> 593</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">nBits</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">32</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">32</tt><tt class="py-op">,</tt> <tt class="py-number">32</tt><tt class="py-op">,</tt> <tt class="py-number">32</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt>< [...]
-<a name="L594"></a><tt class="py-lineno"> 594</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt> </tt>
-<a name="L595"></a><tt class="py-lineno"> 595</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">nBits</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">64</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">64</tt><tt class="py-op">,</tt> <tt class="py-number">64</tt><tt class="py-op">,</tt> <tt class="py-number">64</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt>< [...]
-<a name="L596"></a><tt class="py-lineno"> 596</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint64</tt> </tt>
-<a name="L597"></a><tt class="py-lineno"> 597</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L598"></a><tt class="py-lineno"> 598</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">(</tt><tt class="py-string">"Unsupported number of bits for unsigned int: %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L599"></a><tt class="py-lineno"> 599</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">sampleFormat</tt> <tt class="py-op">==</tt> <tt id="link-143" class="py-name"><a title="fabio.TiffIO.SAMPLE_FORMAT_INT" class="py-name" href="#" onclick="return doclink('link-143', 'SAMPLE_FORMAT_INT', 'link-20');">SAMPLE_FORMAT_INT</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L600"></a><tt class="py-lineno"> 600</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nBits</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt><tt cla [...]
-<a name="L601"></a><tt class="py-lineno"> 601</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int8</tt> </tt>
-<a name="L602"></a><tt class="py-lineno"> 602</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">nBits</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">16</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">16</tt><tt class="py-op">,</tt> <tt class="py-number">16</tt><tt class="py-op">,</tt> <tt class="py-number">16</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt>< [...]
-<a name="L603"></a><tt class="py-lineno"> 603</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt> </tt>
-<a name="L604"></a><tt class="py-lineno"> 604</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">nBits</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">32</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">32</tt><tt class="py-op">,</tt> <tt class="py-number">32</tt><tt class="py-op">,</tt> <tt class="py-number">32</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt>< [...]
-<a name="L605"></a><tt class="py-lineno"> 605</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt> </tt>
-<a name="L606"></a><tt class="py-lineno"> 606</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">nBits</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">64</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-number">64</tt><tt class="py-op">,</tt> <tt class="py-number">64</tt><tt class="py-op">,</tt> <tt class="py-number">64</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt>< [...]
-<a name="L607"></a><tt class="py-lineno"> 607</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int64</tt> </tt>
-<a name="L608"></a><tt class="py-lineno"> 608</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L609"></a><tt class="py-lineno"> 609</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">(</tt><tt class="py-string">"Unsupported number of bits for signed int: %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L610"></a><tt class="py-lineno"> 610</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L611"></a><tt class="py-lineno"> 611</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">(</tt><tt class="py-string">"Unsupported combination. Bits = %s Format = %d"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt> <tt class="py-name">sampleFormat</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L612"></a><tt class="py-lineno"> 612</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt> <tt class="py-string">'index'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L613"></a><tt class="py-lineno"> 613</tt> <tt class="py-line"> <tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt id="link-144" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onc [...]
-<a name="L614"></a><tt class="py-lineno"> 614</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">colormap</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L615"></a><tt class="py-lineno"> 615</tt> <tt class="py-line"> <tt class="py-comment">#should I use colormap dtype?</tt> </tt>
-<a name="L616"></a><tt class="py-lineno"> 616</tt> <tt class="py-line"> <tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt class="py-number">3</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt> [...]
-<a name="L617"></a><tt class="py-lineno"> 617</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L618"></a><tt class="py-lineno"> 618</tt> <tt class="py-line"> <tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">dtype</tt [...]
-<a name="L619"></a><tt class="py-lineno"> 619</tt> <tt class="py-line"> </tt>
-<a name="L620"></a><tt class="py-lineno"> 620</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> </tt>
-<a name="L621"></a><tt class="py-lineno"> 621</tt> <tt class="py-line"> <tt class="py-name">st</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> </tt>
-<a name="L622"></a><tt class="py-lineno"> 622</tt> <tt class="py-line"> <tt class="py-name">stripOffsets</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt> <tt class="py-comment">#This contains the file offsets to the data positions</tt> </tt>
-<a name="L623"></a><tt class="py-lineno"> 623</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"rowsPerStrip"</tt><tt class="py-op">]</tt> </tt>
-<a name="L624"></a><tt class="py-lineno"> 624</tt> <tt class="py-line"> <tt class="py-name">stripByteCounts</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripByteCounts"</tt><tt class="py-op">]</tt> <tt class="py-comment">#bytes in strip since I do not support compression</tt> </tt>
-<a name="L625"></a><tt class="py-lineno"> 625</tt> <tt class="py-line"> </tt>
-<a name="L626"></a><tt class="py-lineno"> 626</tt> <tt class="py-line"> <tt class="py-name">rowStart</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L627"></a><tt class="py-lineno"> 627</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-145" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-145', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">stripOffsets</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L628"></a><tt class="py-lineno"> 628</tt> <tt class="py-line"> <tt class="py-name">bytesPerRow</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">stripByteCounts</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">/</tt> <tt class="py-name">rowsPerStrip</tt><tt class="py-op">)</tt> </tt>
-<a name="L629"></a><tt class="py-lineno"> 629</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">stripOffsets</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-name">rowMin</tt> <tt class="py-op">*</tt> <tt class="py-name">bytesPerRow</tt><tt class="py-op">)</tt> </tt>
-<a name="L630"></a><tt class="py-lineno"> 630</tt> <tt class="py-line"> <tt class="py-name">nBytes</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">rowMax</tt> <tt class="py-op">-</tt> <tt class="py-name">rowMin</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-name">bytesPerRow</tt> </tt>
-<a name="L631"></a><tt class="py-lineno"> 631</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_swap</tt><tt class="py-op">:</tt> </tt>
-<a name="L632"></a><tt class="py-lineno"> 632</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-146" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-146', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">nBytes</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L633"></a><tt class="py-lineno"> 633</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L634"></a><tt class="py-lineno"> 634</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-147" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-147', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">nBytes</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L635"></a><tt class="py-lineno"> 635</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt> <tt class="py-string">'index'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L636"></a><tt class="py-lineno"> 636</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt id="link-148" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-148', 'len', 'link-27') [...]
-<a name="L637"></a><tt class="py-lineno"> 637</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">'colormap'</tt><tt class="py-op">]</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L638"></a><tt class="py-lineno"> 638</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">colormap</tt><tt class="py-op">[</tt><tt class="py-name">readout</tt><tt class="py-op">]</tt> </tt>
-<a name="L639"></a><tt class="py-lineno"> 639</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L640"></a><tt class="py-lineno"> 640</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt> </tt>
-<a name="L641"></a><tt class="py-lineno"> 641</tt> <tt class="py-line"> <tt class="py-name">image</tt><tt class="py-op">[</tt><tt class="py-name">rowMin</tt><tt class="py-op">:</tt><tt class="py-name">rowMax</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">readout</tt> </tt>
-<a name="L642"></a><tt class="py-lineno"> 642</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L643"></a><tt class="py-lineno"> 643</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-149" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-149', 'i', 'link-53');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt id="link-150" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-150 [...]
-<a name="L644"></a><tt class="py-lineno"> 644</tt> <tt class="py-line"> <tt class="py-comment">#the amount of rows</tt> </tt>
-<a name="L645"></a><tt class="py-lineno"> 645</tt> <tt class="py-line"> <tt class="py-name">nRowsToRead</tt> <tt class="py-op">=</tt> <tt class="py-name">rowsPerStrip</tt> </tt>
-<a name="L646"></a><tt class="py-lineno"> 646</tt> <tt class="py-line"> <tt class="py-name">rowEnd</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">min</tt><tt class="py-op">(</tt><tt class="py-name">rowStart</tt> <tt class="py-op">+</tt> <tt class="py-name">nRowsToRead</tt><tt class="py-op">,</tt> <tt class="py-name">nRows</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L647"></a><tt class="py-lineno"> 647</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowEnd</tt> <tt class="py-op"><</tt> <tt class="py-name">rowMin</tt><tt class="py-op">:</tt> </tt>
-<a name="L648"></a><tt class="py-lineno"> 648</tt> <tt class="py-line"> <tt class="py-name">rowStart</tt> <tt class="py-op">+=</tt> <tt class="py-name">nRowsToRead</tt> </tt>
-<a name="L649"></a><tt class="py-lineno"> 649</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L650"></a><tt class="py-lineno"> 650</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">rowStart</tt> <tt class="py-op">></tt> <tt class="py-name">rowMax</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L651"></a><tt class="py-lineno"> 651</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L652"></a><tt class="py-lineno"> 652</tt> <tt class="py-line"> <tt class="py-comment">#we are in position</tt> </tt>
-<a name="L653"></a><tt class="py-lineno"> 653</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">stripOffsets</tt><tt class="py-op">[</tt><tt id="link-151" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-151', 'i', 'link-53');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L654"></a><tt class="py-lineno"> 654</tt> <tt class="py-line"> <tt class="py-comment">#the amount of bytes to read</tt> </tt>
-<a name="L655"></a><tt class="py-lineno"> 655</tt> <tt class="py-line"> <tt class="py-name">nBytes</tt> <tt class="py-op">=</tt> <tt class="py-name">stripByteCounts</tt><tt class="py-op">[</tt><tt id="link-152" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-152', 'i', 'link-53');">i</a></tt><tt class="py-op">]</tt> </tt>
-<a name="L656"></a><tt class="py-lineno"> 656</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">compression_type</tt> <tt class="py-op">==</tt> <tt class="py-number">32773</tt><tt class="py-op">:</tt> </tt>
-<a name="L657"></a><tt class="py-lineno"> 657</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L658"></a><tt class="py-lineno"> 658</tt> <tt class="py-line"> <tt class="py-name">bufferBytes</tt> <tt class="py-op">=</tt> <tt class="py-name">bytes</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L659"></a><tt class="py-lineno"> 659</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L660"></a><tt class="py-lineno"> 660</tt> <tt class="py-line"> <tt class="py-comment">#python 2.5 ...</tt> </tt>
-<a name="L661"></a><tt class="py-lineno"> 661</tt> <tt class="py-line"> <tt class="py-name">bufferBytes</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L662"></a><tt class="py-lineno"> 662</tt> <tt class="py-line"> <tt class="py-comment">#packBits</tt> </tt>
-<a name="L663"></a><tt class="py-lineno"> 663</tt> <tt class="py-line"> <tt class="py-name">readBytes</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L664"></a><tt class="py-lineno"> 664</tt> <tt class="py-line"> <tt class="py-comment">#intermediate buffer</tt> </tt>
-<a name="L665"></a><tt class="py-lineno"> 665</tt> <tt class="py-line"> <tt class="py-name">tmpBuffer</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-153" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-153', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">nBytes</tt><tt class="py-op">)</tt> </tt>
-<a name="L666"></a><tt class="py-lineno"> 666</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">readBytes</tt> <tt class="py-op"><</tt> <tt class="py-name">nBytes</tt><tt class="py-op">:</tt> </tt>
-<a name="L667"></a><tt class="py-lineno"> 667</tt> <tt class="py-line"> <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-154" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-154', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-string">'b'</tt><tt class="py-op">,</tt> <tt class="py-name">tmpBuffer</tt><tt class="py-op">[</tt><tt class="py-name">readBytes</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-name">readBytes</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="p [...]
-<a name="L668"></a><tt class="py-lineno"> 668</tt> <tt class="py-line"> <tt class="py-name">readBytes</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L669"></a><tt class="py-lineno"> 669</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">n</tt> <tt class="py-op">>=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L670"></a><tt class="py-lineno"> 670</tt> <tt class="py-line"> <tt class="py-comment">#should I prevent reading more than the</tt> </tt>
-<a name="L671"></a><tt class="py-lineno"> 671</tt> <tt class="py-line"> <tt class="py-comment">#length of the chain? Let's python raise</tt> </tt>
-<a name="L672"></a><tt class="py-lineno"> 672</tt> <tt class="py-line"> <tt class="py-comment">#the exception...</tt> </tt>
-<a name="L673"></a><tt class="py-lineno"> 673</tt> <tt class="py-line"> <tt class="py-name">bufferBytes</tt> <tt class="py-op">+=</tt> <tt class="py-name">tmpBuffer</tt><tt class="py-op">[</tt><tt class="py-name">readBytes</tt><tt class="py-op">:</tt>\ </tt>
-<a name="L674"></a><tt class="py-lineno"> 674</tt> <tt class="py-line"> <tt class="py-name">readBytes</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-name">n</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L675"></a><tt class="py-lineno"> 675</tt> <tt class="py-line"> <tt class="py-name">readBytes</tt> <tt class="py-op">+=</tt> <tt class="py-op">(</tt><tt class="py-name">n</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L676"></a><tt class="py-lineno"> 676</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">n</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">128</tt><tt class="py-op">:</tt> </tt>
-<a name="L677"></a><tt class="py-lineno"> 677</tt> <tt class="py-line"> <tt class="py-name">bufferBytes</tt> <tt class="py-op">+=</tt> <tt class="py-op">(</tt><tt class="py-op">-</tt><tt class="py-name">n</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-name">tmpBuffer</tt><tt class="py-op">[</tt><tt class="py-name">readBytes</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class=" [...]
-<a name="L678"></a><tt class="py-lineno"> 678</tt> <tt class="py-line"> <tt class="py-name">readBytes</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L679"></a><tt class="py-lineno"> 679</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L680"></a><tt class="py-lineno"> 680</tt> <tt class="py-line"> <tt class="py-comment">#if read -128 ignore the byte</tt> </tt>
-<a name="L681"></a><tt class="py-lineno"> 681</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L682"></a><tt class="py-lineno"> 682</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_swap</tt><tt class="py-op">:</tt> </tt>
-<a name="L683"></a><tt class="py-lineno"> 683</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">bufferBytes</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L684"></a><tt class="py-lineno"> 684</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L685"></a><tt class="py-lineno"> 685</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">bufferBytes</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L686"></a><tt class="py-lineno"> 686</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt> <tt class="py-string">'index'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L687"></a><tt class="py-lineno"> 687</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt id="link-155" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-155', 'len', 'l [...]
-<a name="L688"></a><tt class="py-lineno"> 688</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">'colormap'</tt><tt class="py-op">]</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L689"></a><tt class="py-lineno"> 689</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">colormap</tt><tt class="py-op">[</tt><tt class="py-name">readout</tt><tt class="py-op">]</tt> </tt>
-<a name="L690"></a><tt class="py-lineno"> 690</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt class="py-number">3</tt> </tt>
-<a name="L691"></a><tt class="py-lineno"> 691</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L692"></a><tt class="py-lineno"> 692</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt> </tt>
-<a name="L693"></a><tt class="py-lineno"> 693</tt> <tt class="py-line"> <tt class="py-name">image</tt><tt class="py-op">[</tt><tt class="py-name">rowStart</tt><tt class="py-op">:</tt><tt class="py-name">rowEnd</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">readout</tt> </tt>
-<a name="L694"></a><tt class="py-lineno"> 694</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L695"></a><tt class="py-lineno"> 695</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L696"></a><tt class="py-lineno"> 696</tt> <tt class="py-line"> <tt class="py-comment">#use numpy</tt> </tt>
-<a name="L697"></a><tt class="py-lineno"> 697</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_swap</tt><tt class="py-op">:</tt> </tt>
-<a name="L698"></a><tt class="py-lineno"> 698</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-156" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-156', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">nBytes</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L699"></a><tt class="py-lineno"> 699</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L700"></a><tt class="py-lineno"> 700</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-157" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-157', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">nBytes</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L701"></a><tt class="py-lineno"> 701</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt> <tt class="py-string">'index'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L702"></a><tt class="py-lineno"> 702</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt id="link-158" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-158', 'len' [...]
-<a name="L703"></a><tt class="py-lineno"> 703</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">colormap</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L704"></a><tt class="py-lineno"> 704</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">colormap</tt><tt class="py-op">[</tt><tt class="py-name">readout</tt><tt class="py-op">]</tt> </tt>
-<a name="L705"></a><tt class="py-lineno"> 705</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt class="py-number">3</tt> </tt>
-<a name="L706"></a><tt class="py-lineno"> 706</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L707"></a><tt class="py-lineno"> 707</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt> </tt>
-<a name="L708"></a><tt class="py-lineno"> 708</tt> <tt class="py-line"> <tt class="py-name">image</tt><tt class="py-op">[</tt><tt class="py-name">rowStart</tt><tt class="py-op">:</tt><tt class="py-name">rowEnd</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">readout</tt> </tt>
-<a name="L709"></a><tt class="py-lineno"> 709</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L710"></a><tt class="py-lineno"> 710</tt> <tt class="py-line"> <tt class="py-comment">#using struct</tt> </tt>
-<a name="L711"></a><tt class="py-lineno"> 711</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-159" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-159', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">"%df"</tt> <tt class="py-op">%</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nBytes</tt> <tt class="py-op">/</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">fd [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-160', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">nBytes</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L712"></a><tt class="py-lineno"> 712</tt> <tt class="py-line"> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L713"></a><tt class="py-lineno"> 713</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">nBits</tt><tt class="py-op">,</tt> <tt class="py-string">'index'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L714"></a><tt class="py-lineno"> 714</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt id="link-161" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-161', 'len' [...]
-<a name="L715"></a><tt class="py-lineno"> 715</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">colormap</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L716"></a><tt class="py-lineno"> 716</tt> <tt class="py-line"> <tt class="py-name">readout</tt> <tt class="py-op">=</tt> <tt class="py-name">colormap</tt><tt class="py-op">[</tt><tt class="py-name">readout</tt><tt class="py-op">]</tt> </tt>
-<a name="L717"></a><tt class="py-lineno"> 717</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt><tt class="py-op">,</tt> <tt class="py-number">3</tt> </tt>
-<a name="L718"></a><tt class="py-lineno"> 718</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L719"></a><tt class="py-lineno"> 719</tt> <tt class="py-line"> <tt class="py-name">readout</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt> </tt>
-<a name="L720"></a><tt class="py-lineno"> 720</tt> <tt class="py-line"> <tt class="py-name">image</tt><tt class="py-op">[</tt><tt class="py-name">rowStart</tt><tt class="py-op">:</tt><tt class="py-name">rowEnd</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">readout</tt> </tt>
-<a name="L721"></a><tt class="py-lineno"> 721</tt> <tt class="py-line"> <tt class="py-name">rowStart</tt> <tt class="py-op">+=</tt> <tt class="py-name">nRowsToRead</tt> </tt>
-<a name="L722"></a><tt class="py-lineno"> 722</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">close</tt><tt class="py-op">:</tt> </tt>
-<a name="L723"></a><tt class="py-lineno"> 723</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-162" class="py-name"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsClosed" class="py-name" href="#" onclick="return doclink('link-162', '__makeSureFileIsClosed', 'link-38');">__makeSureFileIsClosed</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L724"></a><tt class="py-lineno"> 724</tt> <tt class="py-line"> </tt>
-<a name="L725"></a><tt class="py-lineno"> 725</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-163" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-163', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</t [...]
-<a name="L726"></a><tt class="py-lineno"> 726</tt> <tt class="py-line"> <tt class="py-comment">#color image</tt> </tt>
-<a name="L727"></a><tt class="py-lineno"> 727</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_forceMonoOutput</tt><tt class="py-op">:</tt> </tt>
-<a name="L728"></a><tt class="py-lineno"> 728</tt> <tt class="py-line"> <tt class="py-comment">#color image, convert to monochrome</tt> </tt>
-<a name="L729"></a><tt class="py-lineno"> 729</tt> <tt class="py-line"> <tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">image</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-number">0.114</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L730"></a><tt class="py-lineno"> 730</tt> <tt class="py-line"> <tt class="py-name">image</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-number">0.587</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L731"></a><tt class="py-lineno"> 731</tt> <tt class="py-line"> <tt class="py-name">image</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-number">0.299</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt> [...]
-<a name="L732"></a><tt class="py-lineno"> 732</tt> <tt class="py-line"> </tt>
-<a name="L733"></a><tt class="py-lineno"> 733</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">rowMin</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-op">(</tt><tt class="py-name">rowMax</tt> <tt class="py-op">==</tt> <tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> [...]
-<a name="L734"></a><tt class="py-lineno"> 734</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCacheIndex</tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">nImage</tt><tt class="py-op">)</tt> </tt>
-<a name="L735"></a><tt class="py-lineno"> 735</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCache</tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">image</tt><tt class="py-op">)</tt> </tt>
-<a name="L736"></a><tt class="py-lineno"> 736</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-164" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-164', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCacheIndex</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-name">self</tt>< [...]
-<a name="L737"></a><tt class="py-lineno"> 737</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCacheIndex</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCacheIndex</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_maxImageCacheLength</tt><tt class="py-op">]</tt> </tt>
-<a name="L738"></a><tt class="py-lineno"> 738</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCache</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_imageDataCache</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_maxImageCacheLength</tt><tt class="py-op">]</tt> </tt>
-<a name="L739"></a><tt class="py-lineno"> 739</tt> <tt class="py-line"> </tt>
-<a name="L740"></a><tt class="py-lineno"> 740</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">image</tt> </tt>
-</div><a name="L741"></a><tt class="py-lineno"> 741</tt> <tt class="py-line"> </tt>
-<a name="TiffIO.writeImage"></a><div id="TiffIO.writeImage-def"><a name="L742"></a><tt class="py-lineno"> 742</tt> <a class="py-toggle" href="#" id="TiffIO.writeImage-toggle" onclick="return toggle('TiffIO.writeImage');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#writeImage">writeImage</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">image0</tt><tt class="py [...]
-</div><div id="TiffIO.writeImage-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO.writeImage-expanded"><a name="L743"></a><tt class="py-lineno"> 743</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">software</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L744"></a><tt class="py-lineno"> 744</tt> <tt class="py-line"> <tt class="py-name">software</tt> <tt class="py-op">=</tt> <tt class="py-string">'PyMca.TiffIO'</tt> </tt>
-<a name="L745"></a><tt class="py-lineno"> 745</tt> <tt class="py-line"> <tt class="py-comment">#if date is None:</tt> </tt>
-<a name="L746"></a><tt class="py-lineno"> 746</tt> <tt class="py-line"> <tt class="py-comment"># date = time.ctime()</tt> </tt>
-<a name="L747"></a><tt class="py-lineno"> 747</tt> <tt class="py-line"> </tt>
-<a name="L748"></a><tt class="py-lineno"> 748</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-165" class="py-name"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsOpen" class="py-name" href="#" onclick="return doclink('link-165', '__makeSureFileIsOpen', 'link-36');">__makeSureFileIsOpen</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L749"></a><tt class="py-lineno"> 749</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> </tt>
-<a name="L750"></a><tt class="py-lineno"> 750</tt> <tt class="py-line"> <tt class="py-comment">#prior to do anything, perform some tests</tt> </tt>
-<a name="L751"></a><tt class="py-lineno"> 751</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-166" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-166', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">image0</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L752"></a><tt class="py-lineno"> 752</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">(</tt><tt class="py-string">"Empty image"</tt><tt class="py-op">)</tt> </tt>
-<a name="L753"></a><tt class="py-lineno"> 753</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-167" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-167', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">image0</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</ [...]
-<a name="L754"></a><tt class="py-lineno"> 754</tt> <tt class="py-line"> <tt class="py-comment">#get a different view</tt> </tt>
-<a name="L755"></a><tt class="py-lineno"> 755</tt> <tt class="py-line"> <tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-name">image0</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L756"></a><tt class="py-lineno"> 756</tt> <tt class="py-line"> <tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt> </tt>
-<a name="L757"></a><tt class="py-lineno"> 757</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L758"></a><tt class="py-lineno"> 758</tt> <tt class="py-line"> <tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-name">image0</tt> </tt>
-<a name="L759"></a><tt class="py-lineno"> 759</tt> <tt class="py-line"> </tt>
-<a name="L760"></a><tt class="py-lineno"> 760</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt> <tt class="py-op">==</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">:</tt> </tt>
-<a name="L761"></a><tt class="py-lineno"> 761</tt> <tt class="py-line"> <tt class="py-name">image</tt> <tt class="py-op">=</tt> <tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">)</tt> </tt>
-<a name="L762"></a><tt class="py-lineno"> 762</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L763"></a><tt class="py-lineno"> 763</tt> <tt class="py-line"> <tt class="py-name">mode</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">mode</tt> </tt>
-<a name="L764"></a><tt class="py-lineno"> 764</tt> <tt class="py-line"> <tt class="py-name">name</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">name</tt> </tt>
-<a name="L765"></a><tt class="py-lineno"> 765</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'w'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">mode</tt><tt class="py-op">:</tt> </tt>
-<a name="L766"></a><tt class="py-lineno"> 766</tt> <tt class="py-line"> <tt class="py-comment">#we have to overwrite the file</tt> </tt>
-<a name="L767"></a><tt class="py-lineno"> 767</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsClosed" class="py-name" href="#" onclick="return doclink('link-168', '__makeSureFileIsClosed', 'link-38');">__makeSureFileIsClosed</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L768"></a><tt class="py-lineno"> 768</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L769"></a><tt class="py-lineno"> 769</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt id="link-169" class="py-name" targets="Method fabio.cbfimage.CIF.exists()=fabio.cbfimage.CIF-class.html#exists"><a title="fabio.cbfimage.CIF.exists" class="py-name" href="#" onclick="return doclink('link-169', 'exists', 'link-169');">exists</a></tt><tt class="py-op">(< [...]
-<a name="L770"></a><tt class="py-lineno"> 770</tt> <tt class="py-line"> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L771"></a><tt class="py-lineno"> 771</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-string">'wb+'</tt><tt class="py-op">)</tt> </tt>
-<a name="L772"></a><tt class="py-lineno"> 772</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-170" class="py-name" targets="Method fabio.TiffIO.TiffIO._initEmptyFile()=fabio.TiffIO.TiffIO-class.html#_initEmptyFile"><a title="fabio.TiffIO.TiffIO._initEmptyFile" class="py-name" href="#" onclick="return doclink('link-170', '_initEmptyFile', 'link-170');">_initEmptyFile</a></tt><tt class="py-op">(</tt><tt class="py-name">fd</tt><tt clas [...]
-<a name="L773"></a><tt class="py-lineno"> 773</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt> </tt>
-<a name="L774"></a><tt class="py-lineno"> 774</tt> <tt class="py-line"> </tt>
-<a name="L775"></a><tt class="py-lineno"> 775</tt> <tt class="py-line"> <tt class="py-comment">#read the file size</tt> </tt>
-<a name="L776"></a><tt class="py-lineno"> 776</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-171" class="py-name"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsOpen" class="py-name" href="#" onclick="return doclink('link-171', '__makeSureFileIsOpen', 'link-36');">__makeSureFileIsOpen</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L777"></a><tt class="py-lineno"> 777</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> </tt>
-<a name="L778"></a><tt class="py-lineno"> 778</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">SEEK_END</tt><tt class="py-op">)</tt> </tt>
-<a name="L779"></a><tt class="py-lineno"> 779</tt> <tt class="py-line"> <tt class="py-name">endOfFile</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L780"></a><tt class="py-lineno"> 780</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L781"></a><tt class="py-lineno"> 781</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-172" class="py-name"><a title="fabio.TiffIO.TiffIO._initEmptyFile" class="py-name" href="#" onclick="return doclink('link-172', '_initEmptyFile', 'link-170');">_initEmptyFile</a></tt><tt class="py-op">(</tt><tt class="py-name">fd</tt><tt class="py-op">)</tt> </tt>
-<a name="L782"></a><tt class="py-lineno"> 782</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">SEEK_END</tt><tt class="py-op">)</tt> </tt>
-<a name="L783"></a><tt class="py-lineno"> 783</tt> <tt class="py-line"> <tt class="py-name">endOfFile</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L784"></a><tt class="py-lineno"> 784</tt> <tt class="py-line"> </tt>
-<a name="L785"></a><tt class="py-lineno"> 785</tt> <tt class="py-line"> <tt class="py-comment">#init internal variables</tt> </tt>
-<a name="L786"></a><tt class="py-lineno"> 786</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-173" class="py-name"><a title="fabio.TiffIO.TiffIO._initInternalVariables" class="py-name" href="#" onclick="return doclink('link-173', '_initInternalVariables', 'link-25');">_initInternalVariables</a></tt><tt class="py-op">(</tt><tt class="py-name">fd</tt><tt class="py-op">)</tt> </tt>
-<a name="L787"></a><tt class="py-lineno"> 787</tt> <tt class="py-line"> <tt class="py-name">st</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> </tt>
-<a name="L788"></a><tt class="py-lineno"> 788</tt> <tt class="py-line"> </tt>
-<a name="L789"></a><tt class="py-lineno"> 789</tt> <tt class="py-line"> <tt class="py-comment">#get the image file directories</tt> </tt>
-<a name="L790"></a><tt class="py-lineno"> 790</tt> <tt class="py-line"> <tt class="py-name">nImages</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-174" class="py-name"><a title="fabio.TiffIO.TiffIO.getImageFileDirectories" class="py-name" href="#" onclick="return doclink('link-174', 'getImageFileDirectories', 'link-31');">getImageFileDirectories</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L791"></a><tt class="py-lineno"> 791</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-175" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-175', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L792"></a><tt class="py-lineno"> 792</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"File contains %d images"</tt> <tt class="py-op">%</tt> <tt class="py-name">nImages</tt><tt class="py-op">)</tt> </tt>
-<a name="L793"></a><tt class="py-lineno"> 793</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nImages</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L794"></a><tt class="py-lineno"> 794</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">)</tt> </tt>
-<a name="L795"></a><tt class="py-lineno"> 795</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt> </tt>
-<a name="L796"></a><tt class="py-lineno"> 796</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-176" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryimage [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-176', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">endOfFile</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L797"></a><tt class="py-lineno"> 797</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L798"></a><tt class="py-lineno"> 798</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_IFD</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L799"></a><tt class="py-lineno"> 799</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'H'</tt> </tt>
-<a name="L800"></a><tt class="py-lineno"> 800</tt> <tt class="py-line"> <tt class="py-name">numberOfDirectoryEntries</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-177" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-177', 'unpack', 'link-29');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-178" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-178', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L801"></a><tt class="py-lineno"> 801</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt> </tt>
-<a name="L802"></a><tt class="py-lineno"> 802</tt> <tt class="py-line"> <tt class="py-name">pos</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_IFD</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py-number">12</tt> <tt class="py-op">*</tt> <tt class="py-name">numberOfDirectory [...]
-<a name="L803"></a><tt class="py-lineno"> 803</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">pos</tt><tt class="py-op">)</tt> </tt>
-<a name="L804"></a><tt class="py-lineno"> 804</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt> </tt>
-<a name="L805"></a><tt class="py-lineno"> 805</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-179" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-179', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">endOfFile</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L806"></a><tt class="py-lineno"> 806</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">flush</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L807"></a><tt class="py-lineno"> 807</tt> <tt class="py-line"> </tt>
-<a name="L808"></a><tt class="py-lineno"> 808</tt> <tt class="py-line"> <tt class="py-comment">#and we can write at the end of the file, find out the file length</tt> </tt>
-<a name="L809"></a><tt class="py-lineno"> 809</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">SEEK_END</tt><tt class="py-op">)</tt> </tt>
-<a name="L810"></a><tt class="py-lineno"> 810</tt> <tt class="py-line"> </tt>
-<a name="L811"></a><tt class="py-lineno"> 811</tt> <tt class="py-line"> <tt class="py-comment">#get the description information from the input information</tt> </tt>
-<a name="L812"></a><tt class="py-lineno"> 812</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">info</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L813"></a><tt class="py-lineno"> 813</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-name">info</tt> </tt>
-<a name="L814"></a><tt class="py-lineno"> 814</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L815"></a><tt class="py-lineno"> 815</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s"</tt> <tt class="py-op">%</tt> <tt class="py-string">""</tt> </tt>
-<a name="L816"></a><tt class="py-lineno"> 816</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-180" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-180', 'key', 'link-128');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">info</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L817"></a><tt class="py-lineno"> 817</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">+=</tt> <tt class="py-string">"%s=%s\n"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-181" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-181', 'key', 'link-128');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt id="link-182" [...]
-<a name="L818"></a><tt class="py-lineno"> 818</tt> <tt class="py-line"> </tt>
-<a name="L819"></a><tt class="py-lineno"> 819</tt> <tt class="py-line"> <tt class="py-comment">#get the image file directory</tt> </tt>
-<a name="L820"></a><tt class="py-lineno"> 820</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-183" class="py-name" targets="Method fabio.TiffIO.TiffIO._getOutputIFD()=fabio.TiffIO.TiffIO-class.html#_getOutputIFD"><a title="fabio.TiffIO.TiffIO._getOutputIFD" class="py-name" href="#" onclick="return doclink('link-183', '_getOutputIFD', 'link-183');">_getOutputIFD</a></tt><tt clas [...]
-<a name="L821"></a><tt class="py-lineno"> 821</tt> <tt class="py-line"> <tt class="py-name">software</tt><tt class="py-op">=</tt><tt class="py-name">software</tt><tt class="py-op">,</tt> </tt>
-<a name="L822"></a><tt class="py-lineno"> 822</tt> <tt class="py-line"> <tt class="py-name">date</tt><tt class="py-op">=</tt><tt class="py-name">date</tt><tt class="py-op">)</tt> </tt>
-<a name="L823"></a><tt class="py-lineno"> 823</tt> <tt class="py-line"> </tt>
-<a name="L824"></a><tt class="py-lineno"> 824</tt> <tt class="py-line"> <tt class="py-comment">#write the new IFD</tt> </tt>
-<a name="L825"></a><tt class="py-lineno"> 825</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-184" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-184', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">outputIFD</tt><tt class="py-op">)</tt> </tt>
-<a name="L826"></a><tt class="py-lineno"> 826</tt> <tt class="py-line"> </tt>
-<a name="L827"></a><tt class="py-lineno"> 827</tt> <tt class="py-line"> <tt class="py-comment">#write the image</tt> </tt>
-<a name="L828"></a><tt class="py-lineno"> 828</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_swap</tt><tt class="py-op">:</tt> </tt>
-<a name="L829"></a><tt class="py-lineno"> 829</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-185" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-185', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-186" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,Method fabio.fabioutils.filename_object.tostring()=fabio.fabi [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-186', 'tostring', 'link-186');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L830"></a><tt class="py-lineno"> 830</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L831"></a><tt class="py-lineno"> 831</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-187" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-187', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">image</tt><tt class="py-op">.</tt><tt id="link-188" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-188', 'tostring', 'link-186');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L832"></a><tt class="py-lineno"> 832</tt> <tt class="py-line"> </tt>
-<a name="L833"></a><tt class="py-lineno"> 833</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">flush</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L834"></a><tt class="py-lineno"> 834</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">fd</tt> </tt>
-<a name="L835"></a><tt class="py-lineno"> 835</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-189" class="py-name"><a title="fabio.TiffIO.TiffIO.__makeSureFileIsClosed" class="py-name" href="#" onclick="return doclink('link-189', '__makeSureFileIsClosed', 'link-38');">__makeSureFileIsClosed</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L836"></a><tt class="py-lineno"> 836</tt> <tt class="py-line"> </tt>
-<a name="TiffIO._initEmptyFile"></a><div id="TiffIO._initEmptyFile-def"><a name="L837"></a><tt class="py-lineno"> 837</tt> <a class="py-toggle" href="#" id="TiffIO._initEmptyFile-toggle" onclick="return toggle('TiffIO._initEmptyFile');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#_initEmptyFile">_initEmptyFile</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param"> [...]
-</div><div id="TiffIO._initEmptyFile-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO._initEmptyFile-expanded"><a name="L838"></a><tt class="py-lineno"> 838</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fd</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L839"></a><tt class="py-lineno"> 839</tt> <tt class="py-line"> <tt class="py-name">fd</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt> </tt>
-<a name="L840"></a><tt class="py-lineno"> 840</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">byteorder</tt> <tt class="py-op">==</tt> <tt class="py-string">"little"</tt><tt class="py-op">:</tt> </tt>
-<a name="L841"></a><tt class="py-lineno"> 841</tt> <tt class="py-line"> <tt class="py-name">order</tt> <tt class="py-op">=</tt> <tt class="py-string">"II"</tt> </tt>
-<a name="L842"></a><tt class="py-lineno"> 842</tt> <tt class="py-line"> <tt class="py-comment">#intel, little endian</tt> </tt>
-<a name="L843"></a><tt class="py-lineno"> 843</tt> <tt class="py-line"> <tt class="py-name">fileOrder</tt> <tt class="py-op">=</tt> <tt class="py-string">"little"</tt> </tt>
-<a name="L844"></a><tt class="py-lineno"> 844</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> <tt class="py-op">=</tt> <tt class="py-string">'<'</tt> </tt>
-<a name="L845"></a><tt class="py-lineno"> 845</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L846"></a><tt class="py-lineno"> 846</tt> <tt class="py-line"> <tt class="py-name">order</tt> <tt class="py-op">=</tt> <tt class="py-string">"MM"</tt> </tt>
-<a name="L847"></a><tt class="py-lineno"> 847</tt> <tt class="py-line"> <tt class="py-comment">#motorola, high endian</tt> </tt>
-<a name="L848"></a><tt class="py-lineno"> 848</tt> <tt class="py-line"> <tt class="py-name">fileOrder</tt> <tt class="py-op">=</tt> <tt class="py-string">"big"</tt> </tt>
-<a name="L849"></a><tt class="py-lineno"> 849</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> <tt class="py-op">=</tt> <tt class="py-string">'>'</tt> </tt>
-<a name="L850"></a><tt class="py-lineno"> 850</tt> <tt class="py-line"> <tt class="py-name">st</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> </tt>
-<a name="L851"></a><tt class="py-lineno"> 851</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fileOrder</tt> <tt class="py-op">==</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">byteorder</tt><tt class="py-op">:</tt> </tt>
-<a name="L852"></a><tt class="py-lineno"> 852</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_swap</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L853"></a><tt class="py-lineno"> 853</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L854"></a><tt class="py-lineno"> 854</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_swap</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L855"></a><tt class="py-lineno"> 855</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L856"></a><tt class="py-lineno"> 856</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-190" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-190', 'version', 'link-98');">version</a></tt> <tt class="py-op"><</tt> <tt class="py-string">'3.0'</tt><tt class="py-op">:</tt> </tt>
-<a name="L857"></a><tt class="py-lineno"> 857</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-191" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-191', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'2s'</tt><tt class="py-op">,</tt> <tt class="py-name">order</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L858"></a><tt class="py-lineno"> 858</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-192" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-192', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'H'</tt><tt class="py-op">,</tt> <tt class="py-number">42</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L859"></a><tt class="py-lineno"> 859</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-193" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-193', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L860"></a><tt class="py-lineno"> 860</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L861"></a><tt class="py-lineno"> 861</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-194" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-194', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'2s'</tt><tt class="py-op">,</tt> <tt class="py-name">bytes</tt><tt class="py-op">(</tt><tt class="py-name">order</tt><tt class="py-op">,</tt> <tt class="py [...]
-<a name="L862"></a><tt class="py-lineno"> 862</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-195', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'H'</tt><tt class="py-op">,</tt> <tt class="py-number">42</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L863"></a><tt class="py-lineno"> 863</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt id="link-196" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-196', 'write', 'link-176');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L864"></a><tt class="py-lineno"> 864</tt> <tt class="py-line"> <tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">flush</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L865"></a><tt class="py-lineno"> 865</tt> <tt class="py-line"> </tt>
-<a name="TiffIO._getOutputIFD"></a><div id="TiffIO._getOutputIFD-def"><a name="L866"></a><tt class="py-lineno"> 866</tt> <a class="py-toggle" href="#" id="TiffIO._getOutputIFD-toggle" onclick="return toggle('TiffIO._getOutputIFD');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.TiffIO.TiffIO-class.html#_getOutputIFD">_getOutputIFD</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">image< [...]
-</div><div id="TiffIO._getOutputIFD-collapsed" style="display:none;" pad="++++" indent="++++++++"></div><div id="TiffIO._getOutputIFD-expanded"><a name="L867"></a><tt class="py-lineno"> 867</tt> <tt class="py-line"> <tt class="py-comment">#the tags have to be in order</tt> </tt>
-<a name="L868"></a><tt class="py-lineno"> 868</tt> <tt class="py-line"> <tt class="py-comment">#the very minimum is</tt> </tt>
-<a name="L869"></a><tt class="py-lineno"> 869</tt> <tt class="py-line"> <tt class="py-comment">#256:"NumberOfColumns", # S or L ImageWidth</tt> </tt>
-<a name="L870"></a><tt class="py-lineno"> 870</tt> <tt class="py-line"> <tt class="py-comment">#257:"NumberOfRows", # S or L ImageHeight</tt> </tt>
-<a name="L871"></a><tt class="py-lineno"> 871</tt> <tt class="py-line"> <tt class="py-comment">#258:"BitsPerSample", # S Number of bits per component</tt> </tt>
-<a name="L872"></a><tt class="py-lineno"> 872</tt> <tt class="py-line"> <tt class="py-comment">#259:"Compression", # SHORT (1 - NoCompression, ... </tt> </tt>
-<a name="L873"></a><tt class="py-lineno"> 873</tt> <tt class="py-line"> <tt class="py-comment">#262:"PhotometricInterpretation", # SHORT (0 - WhiteIsZero, 1 -BlackIsZero, 2 - RGB, 3 - Palette color</tt> </tt>
-<a name="L874"></a><tt class="py-lineno"> 874</tt> <tt class="py-line"> <tt class="py-comment">#270:"ImageDescription", # ASCII</tt> </tt>
-<a name="L875"></a><tt class="py-lineno"> 875</tt> <tt class="py-line"> <tt class="py-comment">#273:"StripOffsets", # S or L, for each strip, the byte offset of the strip</tt> </tt>
-<a name="L876"></a><tt class="py-lineno"> 876</tt> <tt class="py-line"> <tt class="py-comment">#278:"RowsPerStrip", # S or L, number of rows in each back may be not for the last</tt> </tt>
-<a name="L877"></a><tt class="py-lineno"> 877</tt> <tt class="py-line"> <tt class="py-comment">#279:"StripByteCounts", # S or L, The number of bytes in the strip AFTER any compression</tt> </tt>
-<a name="L878"></a><tt class="py-lineno"> 878</tt> <tt class="py-line"> <tt class="py-comment">#305:"Software", # ASCII</tt> </tt>
-<a name="L879"></a><tt class="py-lineno"> 879</tt> <tt class="py-line"> <tt class="py-comment">#306:"Date", # ASCII</tt> </tt>
-<a name="L880"></a><tt class="py-lineno"> 880</tt> <tt class="py-line"> <tt class="py-comment">#339:"SampleFormat", # SHORT Interpretation of data in each pixel</tt> </tt>
-<a name="L881"></a><tt class="py-lineno"> 881</tt> <tt class="py-line"> </tt>
-<a name="L882"></a><tt class="py-lineno"> 882</tt> <tt class="py-line"> <tt class="py-name">nDirectoryEntries</tt> <tt class="py-op">=</tt> <tt class="py-number">9</tt> </tt>
-<a name="L883"></a><tt class="py-lineno"> 883</tt> <tt class="py-line"> <tt class="py-name">imageDescription</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L884"></a><tt class="py-lineno"> 884</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">description</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L885"></a><tt class="py-lineno"> 885</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt> <tt class="py-op">=</tt> <tt id="link-197" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-197', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">description</tt><tt class="py-op">)</tt> </tt>
-<a name="L886"></a><tt class="py-lineno"> 886</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">descriptionLength</tt> <tt class="py-op"><</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L887"></a><tt class="py-lineno"> 887</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-name">description</tt> <tt class="py-op">+</tt> <tt class="py-string">" "</tt> </tt>
-<a name="L888"></a><tt class="py-lineno"> 888</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt> <tt class="py-op">=</tt> <tt id="link-198" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-198', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">description</tt><tt class="py-op">)</tt> </tt>
-<a name="L889"></a><tt class="py-lineno"> 889</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-199" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-199', 'version', 'link-98');">version</a></tt> <tt class="py-op">>=</tt> <tt class="py-string">'3.0'</tt><tt class="py-op">:</tt> </tt>
-<a name="L890"></a><tt class="py-lineno"> 890</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-name">bytes</tt><tt class="py-op">(</tt><tt class="py-name">description</tt><tt class="py-op">,</tt> <tt class="py-string">'utf-8'</tt><tt class="py-op">)</tt> </tt>
-<a name="L891"></a><tt class="py-lineno"> 891</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">description</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-string">""</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L892"></a><tt class="py-lineno"> 892</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L893"></a><tt class="py-lineno"> 893</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-name">description</tt><tt class="py-op">.</tt><tt class="py-name">decode</tt><tt class="py-op">(</tt><tt class="py-string">'utf-8'</tt><tt class="py-op">)</tt> </tt>
-<a name="L894"></a><tt class="py-lineno"> 894</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">UnicodeDecodeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L895"></a><tt class="py-lineno"> 895</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L896"></a><tt class="py-lineno"> 896</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-name">description</tt><tt class="py-op">.</tt><tt class="py-name">decode</tt><tt class="py-op">(</tt><tt class="py-string">'latin-1'</tt><tt class="py-op">)</tt> </tt>
-<a name="L897"></a><tt class="py-lineno"> 897</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">UnicodeDecodeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L898"></a><tt class="py-lineno"> 898</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s"</tt> <tt class="py-op">%</tt> <tt class="py-name">description</tt> </tt>
-<a name="L899"></a><tt class="py-lineno"> 899</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-200" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-200', 'version', 'link-98');">version</a></tt> <tt class="py-op">></tt> <tt class="py-string">'2.6'</tt><tt class="py-op">:</tt> </tt>
-<a name="L900"></a><tt class="py-lineno"> 900</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-name">description</tt><tt class="py-op">.</tt><tt class="py-name">encode</tt><tt class="py-op">(</tt><tt class="py-string">'utf-8'</tt><tt class="py-op">,</tt> <tt class="py-name">errors</tt><tt class="py-op">=</tt><tt class="py-string">"ignore"</tt><tt class="py-op">)</tt> </tt>
-<a name="L901"></a><tt class="py-lineno"> 901</tt> <tt class="py-line"> <tt class="py-name">description</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s"</tt> <tt class="py-op">%</tt> <tt class="py-name">description</tt> </tt>
-<a name="L902"></a><tt class="py-lineno"> 902</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt> <tt class="py-op">=</tt> <tt id="link-201" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-201', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">description</tt><tt class="py-op">)</tt> </tt>
-<a name="L903"></a><tt class="py-lineno"> 903</tt> <tt class="py-line"> <tt class="py-name">imageDescription</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-string">"%ds"</tt> <tt class="py-op">%</tt> <tt class="py-name">descriptionLength</tt><tt class="py-op">,</tt> <tt class="py-name">description</tt><tt class="py-op">)</tt> </tt>
-<a name="L904"></a><tt class="py-lineno"> 904</tt> <tt class="py-line"> <tt class="py-name">nDirectoryEntries</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L905"></a><tt class="py-lineno"> 905</tt> <tt class="py-line"> </tt>
-<a name="L906"></a><tt class="py-lineno"> 906</tt> <tt class="py-line"> <tt class="py-comment">#software</tt> </tt>
-<a name="L907"></a><tt class="py-lineno"> 907</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">software</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L908"></a><tt class="py-lineno"> 908</tt> <tt class="py-line"> <tt class="py-name">softwareLength</tt> <tt class="py-op">=</tt> <tt id="link-202" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-202', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">software</tt><tt class="py-op">)</tt> </tt>
-<a name="L909"></a><tt class="py-lineno"> 909</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">softwareLength</tt> <tt class="py-op"><</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L910"></a><tt class="py-lineno"> 910</tt> <tt class="py-line"> <tt class="py-name">software</tt> <tt class="py-op">=</tt> <tt class="py-name">software</tt> <tt class="py-op">+</tt> <tt class="py-string">" "</tt> </tt>
-<a name="L911"></a><tt class="py-lineno"> 911</tt> <tt class="py-line"> <tt class="py-name">softwareLength</tt> <tt class="py-op">=</tt> <tt id="link-203" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-203', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">software</tt><tt class="py-op">)</tt> </tt>
-<a name="L912"></a><tt class="py-lineno"> 912</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-204" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-204', 'version', 'link-98');">version</a></tt> <tt class="py-op">>=</tt> <tt class="py-string">'3.0'</tt><tt class="py-op">:</tt> </tt>
-<a name="L913"></a><tt class="py-lineno"> 913</tt> <tt class="py-line"> <tt class="py-name">software</tt> <tt class="py-op">=</tt> <tt class="py-name">bytes</tt><tt class="py-op">(</tt><tt class="py-name">software</tt><tt class="py-op">,</tt> <tt class="py-string">'utf-8'</tt><tt class="py-op">)</tt> </tt>
-<a name="L914"></a><tt class="py-lineno"> 914</tt> <tt class="py-line"> <tt class="py-name">softwarePackedString</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-string">"%ds"</tt> <tt class="py-op">%</tt> <tt class="py-name">softwareLength</tt><tt class="py-op">,</tt> <tt class="py-name">software</tt><tt class="py-op">)</tt> </tt>
-<a name="L915"></a><tt class="py-lineno"> 915</tt> <tt class="py-line"> <tt class="py-name">nDirectoryEntries</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L916"></a><tt class="py-lineno"> 916</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L917"></a><tt class="py-lineno"> 917</tt> <tt class="py-line"> <tt class="py-name">softwareLength</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L918"></a><tt class="py-lineno"> 918</tt> <tt class="py-line"> </tt>
-<a name="L919"></a><tt class="py-lineno"> 919</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">date</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L920"></a><tt class="py-lineno"> 920</tt> <tt class="py-line"> <tt class="py-name">dateLength</tt> <tt class="py-op">=</tt> <tt id="link-205" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-205', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">date</tt><tt class="py-op">)</tt> </tt>
-<a name="L921"></a><tt class="py-lineno"> 921</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-206" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-206', 'version', 'link-98');">version</a></tt> <tt class="py-op">>=</tt> <tt class="py-string">'3.0'</tt><tt class="py-op">:</tt> </tt>
-<a name="L922"></a><tt class="py-lineno"> 922</tt> <tt class="py-line"> <tt class="py-name">date</tt> <tt class="py-op">=</tt> <tt class="py-name">bytes</tt><tt class="py-op">(</tt><tt class="py-name">date</tt><tt class="py-op">,</tt> <tt class="py-string">'utf-8'</tt><tt class="py-op">)</tt> </tt>
-<a name="L923"></a><tt class="py-lineno"> 923</tt> <tt class="py-line"> <tt class="py-name">datePackedString</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-string">"%ds"</tt> <tt class="py-op">%</tt> <tt class="py-name">dateLength</tt><tt class="py-op">,</tt> <tt class="py-name">date</tt><tt class="py-op">)</tt> </tt>
-<a name="L924"></a><tt class="py-lineno"> 924</tt> <tt class="py-line"> <tt class="py-name">dateLength</tt> <tt class="py-op">=</tt> <tt id="link-207" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-207', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">datePackedString</tt><tt class="py-op">)</tt> </tt>
-<a name="L925"></a><tt class="py-lineno"> 925</tt> <tt class="py-line"> <tt class="py-name">nDirectoryEntries</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L926"></a><tt class="py-lineno"> 926</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L927"></a><tt class="py-lineno"> 927</tt> <tt class="py-line"> <tt class="py-name">dateLength</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L928"></a><tt class="py-lineno"> 928</tt> <tt class="py-line"> </tt>
-<a name="L929"></a><tt class="py-lineno"> 929</tt> <tt class="py-line"> <tt class="py-name">nRows</tt><tt class="py-op">,</tt> <tt class="py-name">nColumns</tt> <tt class="py-op">=</tt> <tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L930"></a><tt class="py-lineno"> 930</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">image</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt> </tt>
-<a name="L931"></a><tt class="py-lineno"> 931</tt> <tt class="py-line"> <tt class="py-name">bitsPerSample</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt id="link-208" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-208', 'str', 'link-125');">str</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-number">8</tt> </tt>
-<a name="L932"></a><tt class="py-lineno"> 932</tt> <tt class="py-line"> </tt>
-<a name="L933"></a><tt class="py-lineno"> 933</tt> <tt class="py-line"> <tt class="py-comment">#only uncompressed data</tt> </tt>
-<a name="L934"></a><tt class="py-lineno"> 934</tt> <tt class="py-line"> <tt id="link-209" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-209', 'compression', 'link-91');">compression</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L935"></a><tt class="py-lineno"> 935</tt> <tt class="py-line"> </tt>
-<a name="L936"></a><tt class="py-lineno"> 936</tt> <tt class="py-line"> <tt class="py-comment">#interpretation, black is zero</tt> </tt>
-<a name="L937"></a><tt class="py-lineno"> 937</tt> <tt class="py-line"> <tt class="py-name">interpretation</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L938"></a><tt class="py-lineno"> 938</tt> <tt class="py-line"> </tt>
-<a name="L939"></a><tt class="py-lineno"> 939</tt> <tt class="py-line"> <tt class="py-comment">#image description</tt> </tt>
-<a name="L940"></a><tt class="py-lineno"> 940</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">imageDescription</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L941"></a><tt class="py-lineno"> 941</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt> <tt class="py-op">=</tt> <tt id="link-210" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-210', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">imageDescription</tt><tt class="py-op">)</tt> </tt>
-<a name="L942"></a><tt class="py-lineno"> 942</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L943"></a><tt class="py-lineno"> 943</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L944"></a><tt class="py-lineno"> 944</tt> <tt class="py-line"> </tt>
-<a name="L945"></a><tt class="py-lineno"> 945</tt> <tt class="py-line"> <tt class="py-comment">#strip offsets</tt> </tt>
-<a name="L946"></a><tt class="py-lineno"> 946</tt> <tt class="py-line"> <tt class="py-comment">#we are putting them after the directory and the directory is</tt> </tt>
-<a name="L947"></a><tt class="py-lineno"> 947</tt> <tt class="py-line"> <tt class="py-comment">#at the end of the file</tt> </tt>
-<a name="L948"></a><tt class="py-lineno"> 948</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">SEEK_END</tt><tt class="py-op">)</tt> </tt>
-<a name="L949"></a><tt class="py-lineno"> 949</tt> <tt class="py-line"> <tt class="py-name">endOfFile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fd</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L950"></a><tt class="py-lineno"> 950</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">endOfFile</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L951"></a><tt class="py-lineno"> 951</tt> <tt class="py-line"> <tt class="py-comment">#empty file</tt> </tt>
-<a name="L952"></a><tt class="py-lineno"> 952</tt> <tt class="py-line"> <tt class="py-name">endOfFile</tt> <tt class="py-op">=</tt> <tt class="py-number">8</tt> </tt>
-<a name="L953"></a><tt class="py-lineno"> 953</tt> <tt class="py-line"> </tt>
-<a name="L954"></a><tt class="py-lineno"> 954</tt> <tt class="py-line"> <tt class="py-comment">#rows per strip</tt> </tt>
-<a name="L955"></a><tt class="py-lineno"> 955</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-211" class="py-name"><a title="fabio.TiffIO.ALLOW_MULTIPLE_STRIPS" class="py-name" href="#" onclick="return doclink('link-211', 'ALLOW_MULTIPLE_STRIPS', 'link-2');">ALLOW_MULTIPLE_STRIPS</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L956"></a><tt class="py-lineno"> 956</tt> <tt class="py-line"> <tt class="py-comment">#try to segment the image in several pieces</tt> </tt>
-<a name="L957"></a><tt class="py-lineno"> 957</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">%</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L958"></a><tt class="py-lineno"> 958</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">/</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt> </tt>
-<a name="L959"></a><tt class="py-lineno"> 959</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-keyword">not</tt> <tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">%</tt> <tt class="py-number">10</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L960"></a><tt class="py-lineno"> 960</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">/</tt> <tt class="py-number">10</tt><tt class="py-op">)</tt> </tt>
-<a name="L961"></a><tt class="py-lineno"> 961</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-keyword">not</tt> <tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">%</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L962"></a><tt class="py-lineno"> 962</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">/</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt> </tt>
-<a name="L963"></a><tt class="py-lineno"> 963</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-keyword">not</tt> <tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">%</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L964"></a><tt class="py-lineno"> 964</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">/</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt> </tt>
-<a name="L965"></a><tt class="py-lineno"> 965</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-keyword">not</tt> <tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">%</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L966"></a><tt class="py-lineno"> 966</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">/</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt> </tt>
-<a name="L967"></a><tt class="py-lineno"> 967</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L968"></a><tt class="py-lineno"> 968</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">nRows</tt> </tt>
-<a name="L969"></a><tt class="py-lineno"> 969</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L970"></a><tt class="py-lineno"> 970</tt> <tt class="py-line"> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">=</tt> <tt class="py-name">nRows</tt> </tt>
-<a name="L971"></a><tt class="py-lineno"> 971</tt> <tt class="py-line"> </tt>
-<a name="L972"></a><tt class="py-lineno"> 972</tt> <tt class="py-line"> <tt class="py-comment">#stripByteCounts</tt> </tt>
-<a name="L973"></a><tt class="py-lineno"> 973</tt> <tt class="py-line"> <tt class="py-name">stripByteCounts</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nColumns</tt> <tt class="py-op">*</tt> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">*</tt> <tt class="py-name">bitsPerSample</tt> <tt class="py-op">/</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt> </tt>
-<a name="L974"></a><tt class="py-lineno"> 974</tt> <tt class="py-line"> </tt>
-<a name="L975"></a><tt class="py-lineno"> 975</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">descriptionLength</tt> <tt class="py-op">></tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L976"></a><tt class="py-lineno"> 976</tt> <tt class="py-line"> <tt class="py-name">stripOffsets0</tt> <tt class="py-op">=</tt> <tt class="py-name">endOfFile</tt> <tt class="py-op">+</tt> <tt class="py-name">dateLength</tt> <tt class="py-op">+</tt> <tt class="py-name">descriptionLength</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L977"></a><tt class="py-lineno"> 977</tt> <tt class="py-line"> <tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py-number">12</tt> <tt class="py-op">*</tt> <tt class="py-name">nDirectoryEntries</tt> <tt class="py-op">+</tt> <tt class="py-number">4</tt> </tt>
-<a name="L978"></a><tt class="py-lineno"> 978</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L979"></a><tt class="py-lineno"> 979</tt> <tt class="py-line"> <tt class="py-name">stripOffsets0</tt> <tt class="py-op">=</tt> <tt class="py-name">endOfFile</tt> <tt class="py-op">+</tt> <tt class="py-name">dateLength</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L980"></a><tt class="py-lineno"> 980</tt> <tt class="py-line"> <tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py-number">12</tt> <tt class="py-op">*</tt> <tt class="py-name">nDirectoryEntries</tt> <tt class="py-op">+</tt> <tt class="py-number">4</tt> </tt>
-<a name="L981"></a><tt class="py-lineno"> 981</tt> <tt class="py-line"> </tt>
-<a name="L982"></a><tt class="py-lineno"> 982</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">softwareLength</tt> <tt class="py-op">></tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L983"></a><tt class="py-lineno"> 983</tt> <tt class="py-line"> <tt class="py-name">stripOffsets0</tt> <tt class="py-op">+=</tt> <tt class="py-name">softwareLength</tt> </tt>
-<a name="L984"></a><tt class="py-lineno"> 984</tt> <tt class="py-line"> </tt>
-<a name="L985"></a><tt class="py-lineno"> 985</tt> <tt class="py-line"> <tt class="py-name">stripOffsets</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">stripOffsets0</tt><tt class="py-op">]</tt> </tt>
-<a name="L986"></a><tt class="py-lineno"> 986</tt> <tt class="py-line"> <tt class="py-name">stripOffsetsLength</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L987"></a><tt class="py-lineno"> 987</tt> <tt class="py-line"> <tt class="py-name">stripOffsetsString</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L988"></a><tt class="py-lineno"> 988</tt> <tt class="py-line"> </tt>
-<a name="L989"></a><tt class="py-lineno"> 989</tt> <tt class="py-line"> <tt class="py-name">st</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_structChar</tt> </tt>
-<a name="L990"></a><tt class="py-lineno"> 990</tt> <tt class="py-line"> </tt>
-<a name="L991"></a><tt class="py-lineno"> 991</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rowsPerStrip</tt> <tt class="py-op">!=</tt> <tt class="py-name">nRows</tt><tt class="py-op">:</tt> </tt>
-<a name="L992"></a><tt class="py-lineno"> 992</tt> <tt class="py-line"> <tt class="py-name">nStripOffsets</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">nRows</tt> <tt class="py-op">/</tt> <tt class="py-name">rowsPerStrip</tt><tt class="py-op">)</tt> </tt>
-<a name="L993"></a><tt class="py-lineno"> 993</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt> </tt>
-<a name="L994"></a><tt class="py-lineno"> 994</tt> <tt class="py-line"> <tt class="py-name">stripOffsetsLength</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">calcsize</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-name">nStripOffsets</tt> </tt>
-<a name="L995"></a><tt class="py-lineno"> 995</tt> <tt class="py-line"> <tt class="py-name">stripOffsets0</tt> <tt class="py-op">+=</tt> <tt class="py-name">stripOffsetsLength</tt> </tt>
-<a name="L996"></a><tt class="py-lineno"> 996</tt> <tt class="py-line"> <tt class="py-comment">#the length for the stripByteCounts will be the same</tt> </tt>
-<a name="L997"></a><tt class="py-lineno"> 997</tt> <tt class="py-line"> <tt class="py-name">stripOffsets0</tt> <tt class="py-op">+=</tt> <tt class="py-name">stripOffsetsLength</tt> </tt>
-<a name="L998"></a><tt class="py-lineno"> 998</tt> <tt class="py-line"> <tt class="py-name">stripOffsets</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L999"></a><tt class="py-lineno"> 999</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-212" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-212', 'i', 'link-53');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">nStripOffsets</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L1000"></a><tt class="py-lineno">1000</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt class="py-name">stripOffsets0</tt> <tt class="py-op">+</tt> <tt id="link-213" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-213', 'i', 'link-53');">i</a></tt> <tt class="py-op">*</tt> <tt class="py-name">stripByteCounts</tt> </tt>
-<a name="L1001"></a><tt class="py-lineno">1001</tt> <tt class="py-line"> <tt class="py-name">stripOffsets</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">value</tt><tt class="py-op">)</tt> </tt>
-<a name="L1002"></a><tt class="py-lineno">1002</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-214" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-214', 'i', 'link-53');">i</a></tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L1003"></a><tt class="py-lineno">1003</tt> <tt class="py-line"> <tt class="py-name">stripOffsetsString</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">value</tt><tt class="py-op">)</tt> </tt>
-<a name="L1004"></a><tt class="py-lineno">1004</tt> <tt class="py-line"> <tt class="py-name">stripByteCountsString</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">stripByteCounts</tt><tt class="py-op">)</tt> </tt>
-<a name="L1005"></a><tt class="py-lineno">1005</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L1006"></a><tt class="py-lineno">1006</tt> <tt class="py-line"> <tt class="py-name">stripOffsetsString</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">value</tt><tt class="py-op">)</tt> </tt>
-<a name="L1007"></a><tt class="py-lineno">1007</tt> <tt class="py-line"> <tt class="py-name">stripByteCountsString</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">stripByteCounts</tt><tt class="py-op">)</tt> </tt>
-<a name="L1008"></a><tt class="py-lineno">1008</tt> <tt class="py-line"> </tt>
-<a name="L1009"></a><tt class="py-lineno">1009</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-215" class="py-name"><a title="fabio.TiffIO.DEBUG" class="py-name" href="#" onclick="return doclink('link-215', 'DEBUG', 'link-1');">DEBUG</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L1010"></a><tt class="py-lineno">1010</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"IMAGE WILL START AT %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">stripOffsets</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L1011"></a><tt class="py-lineno">1011</tt> <tt class="py-line"> </tt>
-<a name="L1012"></a><tt class="py-lineno">1012</tt> <tt class="py-line"> <tt class="py-comment">#sample format</tt> </tt>
-<a name="L1013"></a><tt class="py-lineno">1013</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">dtype</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">]</tt> <tt class="py-keyword">or</tt>\ </tt>
-<a name="L1014"></a><tt class="py-lineno">1014</tt> <tt class="py-line"> <tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt id="link-216" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-216', 'str', 'link-125');">str</a></tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'f'</tt><tt class="py-op">:</tt> </tt>
-<a name="L1015"></a><tt class="py-lineno">1015</tt> <tt class="py-line"> <tt class="py-name">sampleFormat</tt> <tt class="py-op">=</tt> <tt id="link-217" class="py-name"><a title="fabio.TiffIO.SAMPLE_FORMAT_FLOAT" class="py-name" href="#" onclick="return doclink('link-217', 'SAMPLE_FORMAT_FLOAT', 'link-21');">SAMPLE_FORMAT_FLOAT</a></tt> </tt>
-<a name="L1016"></a><tt class="py-lineno">1016</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">dtype</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L1017"></a><tt class="py-lineno">1017</tt> <tt class="py-line"> <tt class="py-name">sampleFormat</tt> <tt class="py-op">=</tt> <tt id="link-218" class="py-name"><a title="fabio.TiffIO.SAMPLE_FORMAT_UINT" class="py-name" href="#" onclick="return doclink('link-218', 'SAMPLE_FORMAT_UINT', 'link-19');">SAMPLE_FORMAT_UINT</a></tt> </tt>
-<a name="L1018"></a><tt class="py-lineno">1018</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">dtype</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int8</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">i [...]
-<a name="L1019"></a><tt class="py-lineno">1019</tt> <tt class="py-line"> <tt class="py-name">sampleFormat</tt> <tt class="py-op">=</tt> <tt id="link-219" class="py-name"><a title="fabio.TiffIO.SAMPLE_FORMAT_INT" class="py-name" href="#" onclick="return doclink('link-219', 'SAMPLE_FORMAT_INT', 'link-20');">SAMPLE_FORMAT_INT</a></tt> </tt>
-<a name="L1020"></a><tt class="py-lineno">1020</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L1021"></a><tt class="py-lineno">1021</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">(</tt><tt class="py-string">"Unsupported data type %s"</tt> <tt class="py-op">%</tt> <tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L1022"></a><tt class="py-lineno">1022</tt> <tt class="py-line"> </tt>
-<a name="L1023"></a><tt class="py-lineno">1023</tt> <tt class="py-line"> <tt class="py-name">info</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L1024"></a><tt class="py-lineno">1024</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nColumns"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">nColumns</tt> </tt>
-<a name="L1025"></a><tt class="py-lineno">1025</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nRows"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">nRows</tt> </tt>
-<a name="L1026"></a><tt class="py-lineno">1026</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nBits"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">bitsPerSample</tt> </tt>
-<a name="L1027"></a><tt class="py-lineno">1027</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"compression"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-220" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-220', 'compression', 'link-91');">compression</a></tt> </tt>
-<a name="L1028"></a><tt class="py-lineno">1028</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"photometricInterpretation"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">interpretation</tt> </tt>
-<a name="L1029"></a><tt class="py-lineno">1029</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">stripOffsets</tt> </tt>
-<a name="L1030"></a><tt class="py-lineno">1030</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"rowsPerStrip"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">rowsPerStrip</tt> </tt>
-<a name="L1031"></a><tt class="py-lineno">1031</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripByteCounts"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">stripByteCounts</tt> </tt>
-<a name="L1032"></a><tt class="py-lineno">1032</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"date"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">date</tt> </tt>
-<a name="L1033"></a><tt class="py-lineno">1033</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"sampleFormat"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">sampleFormat</tt> </tt>
-<a name="L1034"></a><tt class="py-lineno">1034</tt> <tt class="py-line"> </tt>
-<a name="L1035"></a><tt class="py-lineno">1035</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L1036"></a><tt class="py-lineno">1036</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt id="link-221" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-221', 'version', 'link-98');">version</a></tt> <tt class="py-op">></tt> <tt class="py-string">'2.6'</tt><tt class="py-op">:</tt> </tt>
-<a name="L1037"></a><tt class="py-lineno">1037</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">=</tt> <tt class="py-name">eval</tt><tt class="py-op">(</tt><tt class="py-string">'b""'</tt><tt class="py-op">)</tt> </tt>
-<a name="L1038"></a><tt class="py-lineno">1038</tt> <tt class="py-line"> </tt>
-<a name="L1039"></a><tt class="py-lineno">1039</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">"H"</tt> </tt>
-<a name="L1040"></a><tt class="py-lineno">1040</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-name">nDirectoryEntries</tt><tt class="py-op">)</tt> </tt>
-<a name="L1041"></a><tt class="py-lineno">1041</tt> <tt class="py-line"> </tt>
-<a name="L1042"></a><tt class="py-lineno">1042</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">"HHII"</tt> </tt>
-<a name="L1043"></a><tt class="py-lineno">1043</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-222" class="py-name"><a title="fabio.TiffIO.TAG_NUMBER_OF_COLUMNS" class="py-name" href="#" onclick="return doclink('link-222', 'TAG_NUMBER_OF_COLUMNS', 'link-4');">TAG_NUMBER_ [...]
-<a name="L1044"></a><tt class="py-lineno">1044</tt> <tt class="py-line"> <tt id="link-223" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-223', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'I'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1045"></a><tt class="py-lineno">1045</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1046"></a><tt class="py-lineno">1046</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nColumns"</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L1047"></a><tt class="py-lineno">1047</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-224" class="py-name"><a title="fabio.TiffIO.TAG_NUMBER_OF_ROWS" class="py-name" href="#" onclick="return doclink('link-224', 'TAG_NUMBER_OF_ROWS', 'link-5');">TAG_NUMBER_OF_ROW [...]
-<a name="L1048"></a><tt class="py-lineno">1048</tt> <tt class="py-line"> <tt id="link-225" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-225', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'I'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1049"></a><tt class="py-lineno">1049</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1050"></a><tt class="py-lineno">1050</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nRows"</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L1051"></a><tt class="py-lineno">1051</tt> <tt class="py-line"> </tt>
-<a name="L1052"></a><tt class="py-lineno">1052</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHIHH'</tt> </tt>
-<a name="L1053"></a><tt class="py-lineno">1053</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-226" class="py-name"><a title="fabio.TiffIO.TAG_BITS_PER_SAMPLE" class="py-name" href="#" onclick="return doclink('link-226', 'TAG_BITS_PER_SAMPLE', 'link-6');">TAG_BITS_PER_SA [...]
-<a name="L1054"></a><tt class="py-lineno">1054</tt> <tt class="py-line"> <tt id="link-227" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-227', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'H'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1055"></a><tt class="py-lineno">1055</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1056"></a><tt class="py-lineno">1056</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"nBits"</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L1057"></a><tt class="py-lineno">1057</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHIHH'</tt> </tt>
-<a name="L1058"></a><tt class="py-lineno">1058</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-228" class="py-name"><a title="fabio.TiffIO.TAG_COMPRESSION" class="py-name" href="#" onclick="return doclink('link-228', 'TAG_COMPRESSION', 'link-8');">TAG_COMPRESSION</a></tt [...]
-<a name="L1059"></a><tt class="py-lineno">1059</tt> <tt class="py-line"> <tt id="link-229" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-229', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'H'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1060"></a><tt class="py-lineno">1060</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1061"></a><tt class="py-lineno">1061</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"compression"</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L1062"></a><tt class="py-lineno">1062</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHIHH'</tt> </tt>
-<a name="L1063"></a><tt class="py-lineno">1063</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-230" class="py-name"><a title="fabio.TiffIO.TAG_PHOTOMETRIC_INTERPRETATION" class="py-name" href="#" onclick="return doclink('link-230', 'TAG_PHOTOMETRIC_INTERPRETATION', 'link [...]
-<a name="L1064"></a><tt class="py-lineno">1064</tt> <tt class="py-line"> <tt id="link-231" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-231', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'H'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1065"></a><tt class="py-lineno">1065</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1066"></a><tt class="py-lineno">1066</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"photometricInterpretation"</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L1067"></a><tt class="py-lineno">1067</tt> <tt class="py-line"> </tt>
-<a name="L1068"></a><tt class="py-lineno">1068</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">imageDescription</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L1069"></a><tt class="py-lineno">1069</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt> <tt class="py-op">=</tt> <tt id="link-232" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-232', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">imageDescription</tt><tt class="py-op">)</tt> </tt>
-<a name="L1070"></a><tt class="py-lineno">1070</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">descriptionLength</tt> <tt class="py-op">></tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L1071"></a><tt class="py-lineno">1071</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHII'</tt> </tt>
-<a name="L1072"></a><tt class="py-lineno">1072</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-233" class="py-name"><a title="fabio.TiffIO.TAG_IMAGE_DESCRIPTION" class="py-name" href="#" onclick="return doclink('link-233', 'TAG_IMAGE_DESCRIPTION', 'link-9');">TAG [...]
-<a name="L1073"></a><tt class="py-lineno">1073</tt> <tt class="py-line"> <tt id="link-234" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-234', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'s'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1074"></a><tt class="py-lineno">1074</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt><tt class="py-op">,</tt> </tt>
-<a name="L1075"></a><tt class="py-lineno">1075</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">-</tt> \ </tt>
-<a name="L1076"></a><tt class="py-lineno">1076</tt> <tt class="py-line"> <tt class="py-number">2</tt> <tt class="py-op">*</tt> <tt class="py-name">stripOffsetsLength</tt> <tt class="py-op">-</tt> \ </tt>
-<a name="L1077"></a><tt class="py-lineno">1077</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt><tt class="py-op">)</tt> </tt>
-<a name="L1078"></a><tt class="py-lineno">1078</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L1079"></a><tt class="py-lineno">1079</tt> <tt class="py-line"> <tt class="py-comment">#it has to have length 4</tt> </tt>
-<a name="L1080"></a><tt class="py-lineno">1080</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHI%ds'</tt> <tt class="py-op">%</tt> <tt class="py-name">descriptionLength</tt> </tt>
-<a name="L1081"></a><tt class="py-lineno">1081</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-235" class="py-name"><a title="fabio.TiffIO.TAG_IMAGE_DESCRIPTION" class="py-name" href="#" onclick="return doclink('link-235', 'TAG_IMAGE_DESCRIPTION', 'link-9');">TAG [...]
-<a name="L1082"></a><tt class="py-lineno">1082</tt> <tt class="py-line"> <tt id="link-236" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-236', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'s'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1083"></a><tt class="py-lineno">1083</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt><tt class="py-op">,</tt> </tt>
-<a name="L1084"></a><tt class="py-lineno">1084</tt> <tt class="py-line"> <tt class="py-name">description</tt><tt class="py-op">)</tt> </tt>
-<a name="L1085"></a><tt class="py-lineno">1085</tt> <tt class="py-line"> </tt>
-<a name="L1086"></a><tt class="py-lineno">1086</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-237" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-237', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">stripOffsets</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L1087"></a><tt class="py-lineno">1087</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHII'</tt> </tt>
-<a name="L1088"></a><tt class="py-lineno">1088</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-238" class="py-name"><a title="fabio.TiffIO.TAG_STRIP_OFFSETS" class="py-name" href="#" onclick="return doclink('link-238', 'TAG_STRIP_OFFSETS', 'link-10');">TAG_STRIP_OFFS [...]
-<a name="L1089"></a><tt class="py-lineno">1089</tt> <tt class="py-line"> <tt id="link-239" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-239', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'I'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1090"></a><tt class="py-lineno">1090</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1091"></a><tt class="py-lineno">1091</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L1092"></a><tt class="py-lineno">1092</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L1093"></a><tt class="py-lineno">1093</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHII'</tt> </tt>
-<a name="L1094"></a><tt class="py-lineno">1094</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-240" class="py-name"><a title="fabio.TiffIO.TAG_STRIP_OFFSETS" class="py-name" href="#" onclick="return doclink('link-240', 'TAG_STRIP_OFFSETS', 'link-10');">TAG_STRIP_OFFS [...]
-<a name="L1095"></a><tt class="py-lineno">1095</tt> <tt class="py-line"> <tt id="link-241" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-241', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'I'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1096"></a><tt class="py-lineno">1096</tt> <tt class="py-line"> <tt id="link-242" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-242', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">stripOffsets</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L1097"></a><tt class="py-lineno">1097</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">-</tt> <tt class="py-number">2</tt> <tt class="py-op">*</tt> <tt class="py-name">stripOffsetsLength</tt><tt class="py-op">)</tt> </tt>
-<a name="L1098"></a><tt class="py-lineno">1098</tt> <tt class="py-line"> </tt>
-<a name="L1099"></a><tt class="py-lineno">1099</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHII'</tt> </tt>
-<a name="L1100"></a><tt class="py-lineno">1100</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-243" class="py-name"><a title="fabio.TiffIO.TAG_ROWS_PER_STRIP" class="py-name" href="#" onclick="return doclink('link-243', 'TAG_ROWS_PER_STRIP', 'link-11');">TAG_ROWS_PER_STR [...]
-<a name="L1101"></a><tt class="py-lineno">1101</tt> <tt class="py-line"> <tt id="link-244" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-244', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'I'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1102"></a><tt class="py-lineno">1102</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1103"></a><tt class="py-lineno">1103</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"rowsPerStrip"</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L1104"></a><tt class="py-lineno">1104</tt> <tt class="py-line"> </tt>
-<a name="L1105"></a><tt class="py-lineno">1105</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-245" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-245', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">stripOffsets</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L1106"></a><tt class="py-lineno">1106</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHII'</tt> </tt>
-<a name="L1107"></a><tt class="py-lineno">1107</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-246" class="py-name"><a title="fabio.TiffIO.TAG_STRIP_BYTE_COUNTS" class="py-name" href="#" onclick="return doclink('link-246', 'TAG_STRIP_BYTE_COUNTS', 'link-12');">TAG_ST [...]
-<a name="L1108"></a><tt class="py-lineno">1108</tt> <tt class="py-line"> <tt id="link-247" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-247', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'I'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1109"></a><tt class="py-lineno">1109</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1110"></a><tt class="py-lineno">1110</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripByteCounts"</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L1111"></a><tt class="py-lineno">1111</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L1112"></a><tt class="py-lineno">1112</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHII'</tt> </tt>
-<a name="L1113"></a><tt class="py-lineno">1113</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-248" class="py-name"><a title="fabio.TiffIO.TAG_STRIP_BYTE_COUNTS" class="py-name" href="#" onclick="return doclink('link-248', 'TAG_STRIP_BYTE_COUNTS', 'link-12');">TAG_ST [...]
-<a name="L1114"></a><tt class="py-lineno">1114</tt> <tt class="py-line"> <tt id="link-249" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-249', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'I'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1115"></a><tt class="py-lineno">1115</tt> <tt class="py-line"> <tt id="link-250" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-250', 'len', 'link-27');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">stripOffsets</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L1116"></a><tt class="py-lineno">1116</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">-</tt> <tt class="py-name">stripOffsetsLength</tt><tt class="py-op">)</tt> </tt>
-<a name="L1117"></a><tt class="py-lineno">1117</tt> <tt class="py-line"> </tt>
-<a name="L1118"></a><tt class="py-lineno">1118</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">software</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L1119"></a><tt class="py-lineno">1119</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">softwareLength</tt> <tt class="py-op">></tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L1120"></a><tt class="py-lineno">1120</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHII'</tt> </tt>
-<a name="L1121"></a><tt class="py-lineno">1121</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-251" class="py-name"><a title="fabio.TiffIO.TAG_SOFTWARE" class="py-name" href="#" onclick="return doclink('link-251', 'TAG_SOFTWARE', 'link-13');">TAG_SOFTWARE</a></tt [...]
-<a name="L1122"></a><tt class="py-lineno">1122</tt> <tt class="py-line"> <tt id="link-252" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-252', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'s'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1123"></a><tt class="py-lineno">1123</tt> <tt class="py-line"> <tt class="py-name">softwareLength</tt><tt class="py-op">,</tt> </tt>
-<a name="L1124"></a><tt class="py-lineno">1124</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">-</tt> \ </tt>
-<a name="L1125"></a><tt class="py-lineno">1125</tt> <tt class="py-line"> <tt class="py-number">2</tt> <tt class="py-op">*</tt> <tt class="py-name">stripOffsetsLength</tt> <tt class="py-op">-</tt> \ </tt>
-<a name="L1126"></a><tt class="py-lineno">1126</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt> <tt class="py-op">-</tt> <tt class="py-name">softwareLength</tt> <tt class="py-op">-</tt> <tt class="py-name">dateLength</tt><tt class="py-op">)</tt> </tt>
-<a name="L1127"></a><tt class="py-lineno">1127</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L1128"></a><tt class="py-lineno">1128</tt> <tt class="py-line"> <tt class="py-comment">#it has to have length 4</tt> </tt>
-<a name="L1129"></a><tt class="py-lineno">1129</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHI%ds'</tt> <tt class="py-op">%</tt> <tt class="py-name">softwareLength</tt> </tt>
-<a name="L1130"></a><tt class="py-lineno">1130</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-253" class="py-name"><a title="fabio.TiffIO.TAG_SOFTWARE" class="py-name" href="#" onclick="return doclink('link-253', 'TAG_SOFTWARE', 'link-13');">TAG_SOFTWARE</a></tt [...]
-<a name="L1131"></a><tt class="py-lineno">1131</tt> <tt class="py-line"> <tt id="link-254" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-254', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'s'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1132"></a><tt class="py-lineno">1132</tt> <tt class="py-line"> <tt class="py-name">softwareLength</tt><tt class="py-op">,</tt> </tt>
-<a name="L1133"></a><tt class="py-lineno">1133</tt> <tt class="py-line"> <tt class="py-name">softwarePackedString</tt><tt class="py-op">)</tt> </tt>
-<a name="L1134"></a><tt class="py-lineno">1134</tt> <tt class="py-line"> </tt>
-<a name="L1135"></a><tt class="py-lineno">1135</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">date</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L1136"></a><tt class="py-lineno">1136</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHII'</tt> </tt>
-<a name="L1137"></a><tt class="py-lineno">1137</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-255" class="py-name"><a title="fabio.TiffIO.TAG_DATE" class="py-name" href="#" onclick="return doclink('link-255', 'TAG_DATE', 'link-14');">TAG_DATE</a></tt><tt class="py-o [...]
-<a name="L1138"></a><tt class="py-lineno">1138</tt> <tt class="py-line"> <tt id="link-256" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-256', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'s'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1139"></a><tt class="py-lineno">1139</tt> <tt class="py-line"> <tt class="py-name">dateLength</tt><tt class="py-op">,</tt> </tt>
-<a name="L1140"></a><tt class="py-lineno">1140</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"stripOffsets"</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">-</tt> \ </tt>
-<a name="L1141"></a><tt class="py-lineno">1141</tt> <tt class="py-line"> <tt class="py-number">2</tt> <tt class="py-op">*</tt> <tt class="py-name">stripOffsetsLength</tt> <tt class="py-op">-</tt> \ </tt>
-<a name="L1142"></a><tt class="py-lineno">1142</tt> <tt class="py-line"> <tt class="py-name">descriptionLength</tt> <tt class="py-op">-</tt> <tt class="py-name">dateLength</tt><tt class="py-op">)</tt> </tt>
-<a name="L1143"></a><tt class="py-lineno">1143</tt> <tt class="py-line"> </tt>
-<a name="L1144"></a><tt class="py-lineno">1144</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'HHIHH'</tt> </tt>
-<a name="L1145"></a><tt class="py-lineno">1145</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-257" class="py-name"><a title="fabio.TiffIO.TAG_SAMPLE_FORMAT" class="py-name" href="#" onclick="return doclink('link-257', 'TAG_SAMPLE_FORMAT', 'link-16');">TAG_SAMPLE_FORMAT< [...]
-<a name="L1146"></a><tt class="py-lineno">1146</tt> <tt class="py-line"> <tt id="link-258" class="py-name"><a title="fabio.TiffIO.FIELD_TYPE_OUT" class="py-name" href="#" onclick="return doclink('link-258', 'FIELD_TYPE_OUT', 'link-18');">FIELD_TYPE_OUT</a></tt><tt class="py-op">[</tt><tt class="py-string">'H'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L1147"></a><tt class="py-lineno">1147</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L1148"></a><tt class="py-lineno">1148</tt> <tt class="py-line"> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">"sampleFormat"</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L1149"></a><tt class="py-lineno">1149</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-name">st</tt> <tt class="py-op">+</tt> <tt class="py-string">'I'</tt> </tt>
-<a name="L1150"></a><tt class="py-lineno">1150</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">pack</tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L1151"></a><tt class="py-lineno">1151</tt> <tt class="py-line"> </tt>
-<a name="L1152"></a><tt class="py-lineno">1152</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">softwareLength</tt> <tt class="py-op">></tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L1153"></a><tt class="py-lineno">1153</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">softwarePackedString</tt> </tt>
-<a name="L1154"></a><tt class="py-lineno">1154</tt> <tt class="py-line"> </tt>
-<a name="L1155"></a><tt class="py-lineno">1155</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">date</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L1156"></a><tt class="py-lineno">1156</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">datePackedString</tt> </tt>
-<a name="L1157"></a><tt class="py-lineno">1157</tt> <tt class="py-line"> </tt>
-<a name="L1158"></a><tt class="py-lineno">1158</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">imageDescription</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L1159"></a><tt class="py-lineno">1159</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">descriptionLength</tt> <tt class="py-op">></tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L1160"></a><tt class="py-lineno">1160</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">imageDescription</tt> </tt>
-<a name="L1161"></a><tt class="py-lineno">1161</tt> <tt class="py-line"> </tt>
-<a name="L1162"></a><tt class="py-lineno">1162</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">stripOffsetsString</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L1163"></a><tt class="py-lineno">1163</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">stripOffsetsString</tt> </tt>
-<a name="L1164"></a><tt class="py-lineno">1164</tt> <tt class="py-line"> <tt class="py-name">outputIFD</tt> <tt class="py-op">+=</tt> <tt class="py-name">stripByteCountsString</tt> </tt>
-<a name="L1165"></a><tt class="py-lineno">1165</tt> <tt class="py-line"> </tt>
-<a name="L1166"></a><tt class="py-lineno">1166</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">outputIFD</tt> </tt>
-</div></div><a name="L1167"></a><tt class="py-lineno">1167</tt> <tt class="py-line"> </tt>
-<a name="L1168"></a><tt class="py-lineno">1168</tt> <tt class="py-line"> </tt>
-<a name="L1169"></a><tt class="py-lineno">1169</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">"__main__"</tt><tt class="py-op">:</tt> </tt>
-<a name="L1170"></a><tt class="py-lineno">1170</tt> <tt class="py-line"> <tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
-<a name="L1171"></a><tt class="py-lineno">1171</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> </tt>
-<a name="L1172"></a><tt class="py-lineno">1172</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt id="link-259" class="py-name"><a title="fabio.cbfimage.CIF.exists" class="py-name" href="#" onclick="return doclink('link-259', 'exists', 'link-169');">exists</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)< [...]
-<a name="L1173"></a><tt class="py-lineno">1173</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Testing file creation"</tt><tt class="py-op">)</tt> </tt>
-<a name="L1174"></a><tt class="py-lineno">1174</tt> <tt class="py-line"> <tt class="py-name">tif</tt> <tt class="py-op">=</tt> <tt id="link-260" class="py-name" targets="Module fabio.TiffIO=fabio.TiffIO-module.html,Class fabio.TiffIO.TiffIO=fabio.TiffIO.TiffIO-class.html"><a title="fabio.TiffIO
-fabio.TiffIO.TiffIO" class="py-name" href="#" onclick="return doclink('link-260', 'TiffIO', 'link-260');">TiffIO</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-string">'wb+'</tt><tt class="py-op">)</tt> </tt>
-<a name="L1175"></a><tt class="py-lineno">1175</tt> <tt class="py-line"> <tt id="link-261" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-261', 'data', 'link-261');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">arange</tt><tt class="py-op">(</tt><tt class="py-number">10000</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L1176"></a><tt class="py-lineno">1176</tt> <tt class="py-line"> <tt id="link-262" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-262', 'data', 'link-261');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-number">100</tt><tt class="py-op">,</tt> <tt class="py-number">100</tt> </tt>
-<a name="L1177"></a><tt class="py-lineno">1177</tt> <tt class="py-line"> <tt class="py-name">tif</tt><tt class="py-op">.</tt><tt id="link-263" class="py-name" targets="Method fabio.TiffIO.TiffIO.writeImage()=fabio.TiffIO.TiffIO-class.html#writeImage"><a title="fabio.TiffIO.TiffIO.writeImage" class="py-name" href="#" onclick="return doclink('link-263', 'writeImage', 'link-263');">writeImage</a></tt><tt class="py-op">(</tt><tt id="link-264" class="py-name"><a title="fabio.edfimage. [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-264', 'data', 'link-261');">data</a></tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">=</tt><tt class="py-op">{</tt><tt class="py-string">'Title'</tt><tt class="py-op">:</tt><tt class="py-string">'1st'</tt><tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
-<a name="L1178"></a><tt class="py-lineno">1178</tt> <tt class="py-line"> <tt class="py-name">tif</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L1179"></a><tt class="py-lineno">1179</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt id="link-265" class="py-name"><a title="fabio.cbfimage.CIF.exists" class="py-name" href="#" onclick="return doclink('link-265', 'exists', 'link-169');">exists</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L1180"></a><tt class="py-lineno">1180</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Testing image appending"</tt><tt class="py-op">)</tt> </tt>
-<a name="L1181"></a><tt class="py-lineno">1181</tt> <tt class="py-line"> <tt class="py-name">tif</tt> <tt class="py-op">=</tt> <tt id="link-266" class="py-name"><a title="fabio.TiffIO
-fabio.TiffIO.TiffIO" class="py-name" href="#" onclick="return doclink('link-266', 'TiffIO', 'link-260');">TiffIO</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-string">'rb+'</tt><tt class="py-op">)</tt> </tt>
-<a name="L1182"></a><tt class="py-lineno">1182</tt> <tt class="py-line"> <tt class="py-name">tif</tt><tt class="py-op">.</tt><tt id="link-267" class="py-name"><a title="fabio.TiffIO.TiffIO.writeImage" class="py-name" href="#" onclick="return doclink('link-267', 'writeImage', 'link-263');">writeImage</a></tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt id="link-268" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-268', 'data', 'link-261');">data</a></tt> <tt class="py-op">*</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">=</tt><tt class="py-op">{</tt><tt class="py-string">'Title'</tt><tt class="py-op">: [...]
-<a name="L1183"></a><tt class="py-lineno">1183</tt> <tt class="py-line"> <tt class="py-name">tif</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L1184"></a><tt class="py-lineno">1184</tt> <tt class="py-line"> <tt class="py-name">tif</tt> <tt class="py-op">=</tt> <tt id="link-269" class="py-name"><a title="fabio.TiffIO
-fabio.TiffIO.TiffIO" class="py-name" href="#" onclick="return doclink('link-269', 'TiffIO', 'link-260');">TiffIO</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L1185"></a><tt class="py-lineno">1185</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Number of images = %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">tif</tt><tt class="py-op">.</tt><tt id="link-270" class="py-name" targets="Method fabio.TiffIO.TiffIO.getNumberOfImages()=fabio.TiffIO.TiffIO-class.html#getNumberOfImages"><a title="fabio.TiffIO.TiffIO.getNumberOfImages" class="py-name" href="#" onclick="return [...]
-<a name="L1186"></a><tt class="py-lineno">1186</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-271" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-271', 'i', 'link-53');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">tif</tt><tt class="py-op">.</tt><tt id="link-272" class="py-name"><a title="fabio.TiffIO.TiffIO.getNumberOfImages" class="py [...]
-<a name="L1187"></a><tt class="py-lineno">1187</tt> <tt class="py-line"> <tt class="py-name">info</tt> <tt class="py-op">=</tt> <tt class="py-name">tif</tt><tt class="py-op">.</tt><tt id="link-273" class="py-name" targets="Method fabio.TiffIO.TiffIO.getInfo()=fabio.TiffIO.TiffIO-class.html#getInfo"><a title="fabio.TiffIO.TiffIO.getInfo" class="py-name" href="#" onclick="return doclink('link-273', 'getInfo', 'link-273');">getInfo</a></tt><tt class="py-op">(</tt><tt id="link-274" c [...]
-<a name="L1188"></a><tt class="py-lineno">1188</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-275" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-275', 'key', 'link-128');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">info</tt><tt class="py-op">:</tt> </tt>
-<a name="L1189"></a><tt class="py-lineno">1189</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-276" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-276', 'key', 'link-128');">key</a></tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">"colormap"</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L1190"></a><tt class="py-lineno">1190</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"%s = %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-277" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-277', 'key', 'link-128');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt id="link-278" clas [...]
-<a name="L1191"></a><tt class="py-lineno">1191</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt class="py-string">'colormap'</tt><tt class="py-op">]</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L1192"></a><tt class="py-lineno">1192</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"RED %s = %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-279" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-279', 'key', 'link-128');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt id="link-280 [...]
-<a name="L1193"></a><tt class="py-lineno">1193</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"GREEN %s = %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-281" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-281', 'key', 'link-128');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt id="link-282 [...]
-<a name="L1194"></a><tt class="py-lineno">1194</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"BLUE %s = %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-283" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-283', 'key', 'link-128');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">[</tt><tt id="link-284 [...]
-<a name="L1195"></a><tt class="py-lineno">1195</tt> <tt class="py-line"> <tt id="link-285" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-285', 'data', 'link-261');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">tif</tt><tt class="py-op">.</tt><tt id="link-286" class="py-name" targets="Method fabio.TiffIO.TiffIO.getImage()=fabio.TiffIO.TiffIO-class.html#getImage"><a title="fabio.TiffIO.TiffIO.getImage" class="py-name" href="#" onclick="return doclink('link-286', 'getImage', 'link-286');">getImage</a></tt><tt class="py-op">(</t [...]
-<a name="L1196"></a><tt class="py-lineno">1196</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"data [0, 0:10] = "</tt><tt class="py-op">,</tt> <tt id="link-288" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-288', 'data', 'link-261');">data</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L1197"></a><tt class="py-lineno">1197</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
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-// -->
-</script>
-</pre>
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-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.TiffIO.TiffIO-class.html b/doc/html/fabio.TiffIO.TiffIO-class.html
deleted file mode 100644
index 8f4d19e..0000000
--- a/doc/html/fabio.TiffIO.TiffIO-class.html
+++ /dev/null
@@ -1,524 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.TiffIO.TiffIO</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.TiffIO-module.html">Module TiffIO</a> ::
- Class TiffIO
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.TiffIO.TiffIO-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class TiffIO</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <strong class="uidshort">TiffIO</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.TiffIO.TiffIO-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filename</span>,
- <span class="summary-sig-arg">mode</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">cache_length</span>=<span class="summary-sig-default">20</span>,
- <span class="summary-sig-arg">mono_output</span>=<span class="summary-sig-default">False</span>)</span><br />
- x.__init__(...) initializes x; see x.__class__.__doc__ for signature</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_initInternalVariables"></a><span class="summary-sig-name">_initInternalVariables</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fd</span>=<span class="summary-sig-default">None</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO._initInternalVariables">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="__makeSureFileIsOpen"></a><span class="summary-sig-name">__makeSureFileIsOpen</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.__makeSureFileIsOpen">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="__makeSureFileIsClosed"></a><span class="summary-sig-name">__makeSureFileIsClosed</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.__makeSureFileIsClosed">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getNumberOfImages"></a><span class="summary-sig-name">getNumberOfImages</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.getNumberOfImages">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_updateIFD"></a><span class="summary-sig-name">_updateIFD</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO._updateIFD">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getImageFileDirectories"></a><span class="summary-sig-name">getImageFileDirectories</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fd</span>=<span class="summary-sig-default">None</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.getImageFileDirectories">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_parseImageFileDirectory"></a><span class="summary-sig-name">_parseImageFileDirectory</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">nImage</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO._parseImageFileDirectory">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_readIFDEntry"></a><span class="summary-sig-name">_readIFDEntry</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">tag</span>,
- <span class="summary-sig-arg">tagIDList</span>,
- <span class="summary-sig-arg">fieldTypeList</span>,
- <span class="summary-sig-arg">nValuesList</span>,
- <span class="summary-sig-arg">valueOffsetList</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO._readIFDEntry">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getData"></a><span class="summary-sig-name">getData</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">nImage</span>,
- <span class="summary-sig-arg">**kw</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.getData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getImage"></a><span class="summary-sig-name">getImage</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">nImage</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.getImage">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getInfo"></a><span class="summary-sig-name">getInfo</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">nImage</span>,
- <span class="summary-sig-arg">**kw</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.getInfo">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_readInfo"></a><span class="summary-sig-name">_readInfo</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">nImage</span>,
- <span class="summary-sig-arg">close</span>=<span class="summary-sig-default">True</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO._readInfo">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_readImage"></a><span class="summary-sig-name">_readImage</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">nImage</span>,
- <span class="summary-sig-arg">**kw</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO._readImage">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="writeImage"></a><span class="summary-sig-name">writeImage</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">image0</span>,
- <span class="summary-sig-arg">info</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">software</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">date</span>=<span class="summary-sig-default">None</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.writeImage">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_initEmptyFile"></a><span class="summary-sig-name">_initEmptyFile</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fd</span>=<span class="summary-sig-default">None</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO._initEmptyFile">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_getOutputIFD"></a><span class="summary-sig-name">_getOutputIFD</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">image</span>,
- <span class="summary-sig-arg">description</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">software</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">date</span>=<span class="summary-sig-default">None</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO._getOutputIFD">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">filename</span>,
- <span class="sig-arg">mode</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">cache_length</span>=<span class="sig-default">20</span>,
- <span class="sig-arg">mono_output</span>=<span class="sig-default">False</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.TiffIO-pysrc.html#TiffIO.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>x.__init__(...) initializes x; see x.__class__.__doc__ for
- signature</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- href="fabio-module.html">Home</a> </th>
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- href="module-tree.html">Trees</a> </th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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- <!--
- // Private objects are initially displayed (because if
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.adscimage-module.html b/doc/html/fabio.adscimage-module.html
deleted file mode 100644
index 45cbc6f..0000000
--- a/doc/html/fabio.adscimage-module.html
+++ /dev/null
@@ -1,211 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.adscimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module adscimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.adscimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module adscimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.adscimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
-+ mods for fabio by JPW
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.adscimage.adscimage-class.html" class="summary-name">adscimage</a><br />
- Read an image in ADSC format (quite similar to edf?)
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Functions</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="test"></a><span class="summary-sig-name">test</span>()</span><br />
- testcase</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.adscimage-pysrc.html#test">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("adscimage")">logging.getLogger("adscimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
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- >http://epydoc.sourceforge.net</a>
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- <!--
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.adscimage-pysrc.html b/doc/html/fabio.adscimage-pysrc.html
deleted file mode 100644
index 28a713b..0000000
--- a/doc/html/fabio.adscimage-pysrc.html
+++ /dev/null
@@ -1,473 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.adscimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module adscimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.adscimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.adscimage-module.html">Module fabio.adscimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring">+ mods for fabio by JPW</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-0', 'fabioimage', 'link-0');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-0');">fabioimage</a></tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt id="link-2" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-2', 'logger', 'link-2');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"adscimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> </tt>
-<a name="adscimage"></a><div id="adscimage-def"><a name="L20"></a><tt class="py-lineno"> 20</tt> <a class="py-toggle" href="#" id="adscimage-toggle" onclick="return toggle('adscimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.adscimage.adscimage-class.html">adscimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="adscimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="adscimage-expanded"><a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt class="py-docstring">""" Read an image in ADSC format (quite similar to edf?) """</tt> </tt>
-<a name="adscimage.__init__"></a><div id="adscimage.__init__-def"><a name="L22"></a><tt class="py-lineno"> 22</tt> <a class="py-toggle" href="#" id="adscimage.__init__-toggle" onclick="return toggle('adscimage.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.adscimage.adscimage-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-par [...]
-</div><div id="adscimage.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="adscimage.__init__-expanded"><a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt id="link-3" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-3', 'fabioimage', 'link-0');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage.__ini [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-4', '__init__', 'link-4');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-name">args</tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">kwargs</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> </tt>
-<a name="adscimage.read"></a><div id="adscimage.read-def"><a name="L25"></a><tt class="py-lineno"> 25</tt> <a class="py-toggle" href="#" id="adscimage.read-toggle" onclick="return toggle('adscimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.adscimage.adscimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class [...]
-</div><div id="adscimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="adscimage.read-expanded"><a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-docstring">""" read in the file """</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-5', '_open', 'link-5');">_open</a></tt><tt class="py-op">(</tt><tt class=" [...]
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._ [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-6', '_readheader', 'link-6');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Error processing adsc header"</tt><tt class="py-op">)</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-comment"># banned by bzip/gzip???</tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclic [...]
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">TypeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-comment"># Gzipped does not allow a seek and read header is not</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-comment"># promising to stop in the right place</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-8', '_open', 'link-5');">_open</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-string">"rb"</tt><tt class="py-op">) [...]
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDimage.read()=fabio.OXDimage.OXDimage-class.html [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-9', 'read', 'link-9');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-10', 'header', 'link-7');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'HEADER_BYTES'</tt><tt [...]
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">binary</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-11', 'read', 'link-9');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-comment">#now read the data into the array</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-12', 'dim1', 'link-12');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt [...]
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-14', 'dim2', 'link-14');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt [...]
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'little'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-16', 'header', 'link-7');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'BYTE_ORDER'</tt><tt class="py-op">]</tt><tt [...]
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-17', 'data', 'link-17');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">binary</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-18', 'dim2', 'link-14');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class=" [...]
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">'Size spec in ADSC-header does not match '</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-string">'size of image data field'</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-20', 'bytecode', 'link-20');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><t [...]
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt id="link-21" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-21', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">"adscimage read in using low byte first (x386-order)"</tt><tt class="py-op">)</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-22', 'data', 'link-17');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">binary</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-23', 'dim2', 'link-14');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class=" [...]
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">'Size spec in ADSC-header does not match '</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-string">'size of image data field'</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-25', 'bytecode', 'link-20');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt id="link-26" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-26', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">'adscimage using high byte first (network order)'</tt><tt class="py-op">)</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-27', 'resetvals', 'link-27');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> </tt>
-<a name="adscimage._readheader"></a><div id="adscimage._readheader-def"><a name="L71"></a><tt class="py-lineno"> 71</tt> <a class="py-toggle" href="#" id="adscimage._readheader-toggle" onclick="return toggle('adscimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.adscimage.adscimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">in [...]
-</div><div id="adscimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="adscimage._readheader-expanded"><a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-docstring">""" read an adsc header """</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">bytesread</tt> <tt class="py-op">=</tt> <tt id="link-28" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-28', 'len', 'link-28');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-string">'}'</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">line</tt><tt class="py-op">:</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'='</tt> <tt class="py-keyword">in</tt> <tt class="py-name">line</tt><tt class="py-op">:</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt id="link-29" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-29', 'key', 'link-29');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.< [...]
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimage.edfimage-class.html#header_keys"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-30', 'header_keys', 'link-30');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt clas [...]
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-32', 'header', 'link-7');">header</a></tt><tt class="py-op">[</tt><tt id="link-33" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-33', 'key', 'link-29');">key</a></tt> [...]
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-name">bytesread</tt> <tt class="py-op">=</tt> <tt class="py-name">bytesread</tt> <tt class="py-op">+</tt> <tt id="link-34" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-34', 'len', 'link-28');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> </tt>
-<a name="adscimage.write"></a><div id="adscimage.write-def"><a name="L84"></a><tt class="py-lineno"> 84</tt> <a class="py-toggle" href="#" id="adscimage.write-toggle" onclick="return toggle('adscimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.adscimage.adscimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">)</tt><tt [...]
-</div><div id="adscimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="adscimage.write-expanded"><a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt class="py-docstring"> Write adsc format</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-string">'{\n'</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-35" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-35', 'key', 'link-29');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-36', [...]
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">+=</tt> <tt class="py-string">"%s = %s;\n"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-37" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-37', 'key', 'link-29');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name [...]
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-comment"># FIXME ??? - made padding match header bytes keyword </tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-comment"># the cbflib example image has exactly 512...</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-40', 'header', 'link-7');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt class="py-string">"HEADER_BYTES"</tt><tt class="py-op">)</tt><tt class="py [...]
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-name">pad</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-41', 'header', 'link-7');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"HEADER_BYTES"</tt><tt class="py- [...]
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-comment"># integer division</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-comment"># 1234567890123456789012</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-comment"># HEADER_BYTES = 1234;\n</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-name">hsize</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt id="link-43" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-43', 'len', 'link-28');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">out</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-number">23</tt><tt c [...]
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">+=</tt> <tt class="py-string">"HEADER_BYTES=%d;\n"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">hsize</tt><tt class="py-op">)</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">pad</tt> <tt class="py-op">=</tt> <tt class="py-name">hsize</tt> <tt class="py-op">-</tt> <tt id="link-44" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-44', 'len', 'link-28');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">out</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-number">2</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">+=</tt> <tt class="py-name">pad</tt> <tt class="py-op">*</tt> <tt class="py-string">' '</tt> <tt class="py-op">+</tt> <tt class="py-string">"}\n"</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-45" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-45', 'len', 'link-28');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">out</tt><tt class="py-op">)</tt> <tt class="py-op">%</tt> <tt class="py-number">512</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt> <tt class="py-op">,< [...]
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">outf</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-string">"wb"</tt><tt class="py-op">)</tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">outf</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryimage-cla [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-46', 'write', 'link-46');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">out</tt><tt class="py-op">)</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-comment"># it says "unsigned_short" ? ... jpw example has:</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-comment"># BYTE_ORDER=big_endian;</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-comment"># TYPE=unsigned_short;</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"little"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-47', 'header', 'link-7');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"BYTE_ORDER"</tt><tt class="py-op">]</tt><tt [...]
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">outf</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-48', 'write', 'link-46');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-49', 'data', 'link-17');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,Method fabio.fabioutils.filename_objec [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-50', 'tostring', 'link-50');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-name">outf</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-51', 'write', 'link-46');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-52', 'data', 'link-17');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-53', 'tostring', 'link-50');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">outf</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> </tt>
-<a name="test"></a><div id="test-def"><a name="L117"></a><tt class="py-lineno">117</tt> <a class="py-toggle" href="#" id="test-toggle" onclick="return toggle('test');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.adscimage-module.html#test">test</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="test-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test-expanded"><a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-docstring">""" testcase """</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">sys</tt><tt class="py-op">,</tt> <tt class="py-name">time</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">img</tt> <tt class="py-op">=</tt> <tt id="link-54" class="py-name" targets="Module fabio.adscimage=fabio.adscimage-module.html,Class fabio.adscimage.adscimage=fabio.adscimage.adscimage-class.html"><a title="fabio.adscimage
-fabio.adscimage.adscimage" class="py-name" href="#" onclick="return doclink('link-54', 'adscimage', 'link-54');">adscimage</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">begin</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">clock</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-op">(</tt><tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-55', 'read', 'link-9');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"><tt class="py-comment"># rim = img.toPIL16()</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name" targets="Method fabio.fabioimage.fabioimage.rebin()=fabio.fabioimage.fabioimage-class.html#rebin"><a title="fabio.fabioimage.fabioimage.rebin" class="py-name" href="#" onclick="return doclink('link-56', 'rebin', 'link-56');">rebin</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="p [...]
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-57', 'write', 'link-46');">write</a></tt><tt class="py-op">(</tt><tt class="py-string">'jegErEnFil0000.img'</tt><tt class="py-op">)</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-string">": max=%d, min=%d, mean=%.2e, stddev=%.2e"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt>\ </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name" targets="Method fabio.fabioimage.fabioimage.getmax()=fabio.fabioimage.fabioimage-class.html#getmax"><a title="fabio.fabioimage.fabioimage.getmax" class="py-name" href="#" onclick="return doclink('link-58', 'getmax', 'link-58');">getmax</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt c [...]
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'integrated intensity (%d %d %d %d) =%.3f'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt>\ </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-number">10</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-number">40</tt><tt class="py-op">,</tt> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name" targets="Method fabio.fabioimage.fabioimage.integrate_area()=fabio.fabioimage.fabioimage-class.html#integr [...]
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-name">end</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">clock</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">end</tt> <tt class="py-op">-</tt> <tt class="py-name">begin</tt> </tt>
-</div><a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">'__main__'</tt><tt class="py-op">:</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt id="link-63" class="py-name" targets="Function fabio.adscimage.test()=fabio.adscimage-module.html#test,Function fabio.brukerimage.test()=fabio.brukerimage-module.html#test,Function fabio.fabioimage.test()=fabio.fabioimage-module.html#test"><a title="fabio.adscimage.test
-fabio.brukerimage.test
-fabio.fabioimage.test" class="py-name" href="#" onclick="return doclink('link-63', 'test', 'link-63');">test</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
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- <th> <a
- href="module-tree.html">Trees</a> </th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
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-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.adscimage.adscimage-class.html b/doc/html/fabio.adscimage.adscimage-class.html
deleted file mode 100644
index 5126ac2..0000000
--- a/doc/html/fabio.adscimage.adscimage-class.html
+++ /dev/null
@@ -1,448 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.adscimage.adscimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.adscimage-module.html">Module adscimage</a> ::
- Class adscimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.adscimage.adscimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class adscimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">adscimage</strong>
-</pre>
-
-<hr />
-<p>Read an image in ADSC format (quite similar to edf?)</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.adscimage.adscimage-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">*args</span>,
- <span class="summary-sig-arg">**kwargs</span>)</span><br />
- Set up initial values</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.adscimage.adscimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- read in the file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.adscimage.adscimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- read an adsc header</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.adscimage.adscimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- Write adsc format</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">*args</span>,
- <span class="sig-arg">**kwargs</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Set up initial values</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>read in the file</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>read an adsc header</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.adscimage-pysrc.html#adscimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>Write adsc format</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
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-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.binaryimage-module.html b/doc/html/fabio.binaryimage-module.html
deleted file mode 100644
index 4a4ff4b..0000000
--- a/doc/html/fabio.binaryimage-module.html
+++ /dev/null
@@ -1,249 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.binaryimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module binaryimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.binaryimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module binaryimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.binaryimage-pysrc.html">source code</a></span></p>
-<p>Authors: Gael Goret, Jerome Kieffer, ESRF, France Emails:
- gael.goret at esrf.fr, jerome.kieffer at esrf.fr</p>
- <p>Binary files images are simple none-compressed 2D images only defined
- by their : data-type, dimensions, byte order and offset</p>
- <p>This simple library has been made for manipulating exotic/unknown
- files format.</p>
-
-<hr />
-<div class="fields"> <p><strong>Version:</strong>
- 17 Apr 2012
- </p>
- <dl><dt>Authors:</dt>
- <dd>
- Ga\xc3\xabl Goret,
- J\xc3\xa9r\xc3\xb4me Kieffer
- </dd>
- </dl>
- <p><strong>Contact:</strong>
- gael.goret at esrf.fr
- </p>
- <p><strong>Copyright:</strong>
- European Synchrotron Radiation Facility, Grenoble, France
- </p>
- <p><strong>License:</strong>
- GPLv3+
- </p>
-</div><!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.binaryimage.binaryimage-class.html" class="summary-name">binaryimage</a><br />
- This simple library has been made for manipulating exotic/unknown
- files format.
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.binaryimage-module.html#__doc__" class="summary-name">__doc__</a> = <code title=""""
-Authors: Gael Goret, Jerome Kieffer, ESRF, France
-Emails: gael.goret at esrf.fr, jerome.kieffer at esrf.fr
-
-Binary files images are simple none-compressed 2D images only defined \
-by their :
-data-type, dimensions, byte order and offset
-
-..."><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("binaryimage")">logging.getLogger("binaryimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__doc__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">__doc__</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-"""
-Authors: Gael Goret, Jerome Kieffer, ESRF, France
-Emails: gael.goret at esrf.fr, jerome.kieffer at esrf.fr
-
-Binary files images are simple none-compressed 2D images only defined <span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-by their :
-data-type, dimensions, byte order and offset
-
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.binaryimage-pysrc.html b/doc/html/fabio.binaryimage-pysrc.html
deleted file mode 100644
index 03aed0e..0000000
--- a/doc/html/fabio.binaryimage-pysrc.html
+++ /dev/null
@@ -1,374 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.binaryimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module binaryimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.binaryimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.binaryimage-module.html">Module fabio.binaryimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8 </tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">__future__</tt> <tt class="py-keyword">import</tt> <tt class="py-name">with_statement</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.OXDimage.__doc__=fabio.OXDimage-module.html#__doc__,Variable fabio.binaryimage.__doc__=fabio.binaryimage-module.html#__doc__,Variable fabio.mar345image.__doc__=fabio.mar345image-module.html#__doc__"><a title="fabio.OXDimage.__doc__
-fabio.binaryimage.__doc__
-fabio.mar345image.__doc__" class="py-name" href="#" onclick="return doclink('link-0', '__doc__', 'link-0');">__doc__</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"""</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-string">Authors: Gael Goret, Jerome Kieffer, ESRF, France</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-string">Emails: gael.goret at esrf.fr, jerome.kieffer at esrf.fr</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-string">Binary files images are simple none-compressed 2D images only defined by their : </tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-string">data-type, dimensions, byte order and offset</tt> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"><tt class="py-string">This simple library has been made for manipulating exotic/unknown files format. </tt> </tt>
-<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
-<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> </tt>
-<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"><tt class="py-name">__authors__</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"Gaël Goret"</tt><tt class="py-op">,</tt> <tt class="py-string">"Jérôme Kieffer"</tt><tt class="py-op">]</tt> </tt>
-<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"><tt class="py-name">__contact__</tt> <tt class="py-op">=</tt> <tt class="py-string">"gael.goret at esrf.fr"</tt><tt class="py-comment">#, jerome.kieffer at esrf.eu"</tt> </tt>
-<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"><tt class="py-name">__license__</tt> <tt class="py-op">=</tt> <tt class="py-string">"GPLv3+"</tt> </tt>
-<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"><tt class="py-name">__copyright__</tt> <tt class="py-op">=</tt> <tt class="py-string">"European Synchrotron Radiation Facility, Grenoble, France"</tt> </tt>
-<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"><tt class="py-name">__version__</tt> <tt class="py-op">=</tt> <tt class="py-string">"17 Apr 2012"</tt> </tt>
-<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> </tt>
-<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"><tt id="link-3" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bruk [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-3', 'logger', 'link-3');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"binaryimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="binaryimage"></a><div id="binaryimage-def"><a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"> </tt>
-<a name="L24"></a><tt class="py-lineno">24</tt> <a class="py-toggle" href="#" id="binaryimage-toggle" onclick="return toggle('binaryimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.binaryimage.binaryimage-class.html">binaryimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="binaryimage-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="binaryimage-expanded"><a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"><tt class="py-docstring"> This simple library has been made for manipulating exotic/unknown files format.</tt> </tt>
-<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"><tt class="py-docstring"> Binary files images are simple none-compressed 2D images only defined by their : </tt> </tt>
-<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"><tt class="py-docstring"> data-type, dimensions, byte order and offset</tt> </tt>
-<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> </tt>
-<a name="binaryimage.__init__"></a><div id="binaryimage.__init__-def"><a name="L32"></a><tt class="py-lineno">32</tt> <a class="py-toggle" href="#" id="binaryimage.__init__-toggle" onclick="return toggle('binaryimage.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.binaryimage.binaryimage-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt cl [...]
-</div><div id="binaryimage.__init__-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="binaryimage.__init__-expanded"><a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt id="link-4" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-4', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-5" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage.__ini [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-5', '__init__', 'link-5');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-name">args</tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">kwargs</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> </tt>
-<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="binaryimage.swap_needed"></a><div id="binaryimage.swap_needed-def"><a name="L36"></a><tt class="py-lineno">36</tt> <a class="py-toggle" href="#" id="binaryimage.swap_needed-toggle" onclick="return toggle('binaryimage.swap_needed');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.binaryimage.binaryimage-class.html#swap_needed">swap_needed</a><tt class="py-op">(</tt><tt class="py-param">endian</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="binaryimage.swap_needed-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="binaryimage.swap_needed-expanded"><a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"><tt class="py-docstring"> Decide if we need to byteswap</tt> </tt>
-<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">endian</tt> <tt class="py-op">==</tt> <tt class="py-string">'<'</tt> <tt class="py-keyword">and</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">little_endian</tt><tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt class="py-op">(</tt><tt class="py-name">endian</tt> <tt class="py-op">==</tt> <tt cl [...]
-<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">False</tt> </tt>
-<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">endian</tt> <tt class="py-op">==</tt> <tt class="py-string">'>'</tt> <tt class="py-keyword">and</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">little_endian</tt><tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt class="py-op">(</tt><tt class="py-name">endian</tt> <tt class="py-op">==</tt> <tt cl [...]
-<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">True</tt> </tt>
-</div><a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> </tt>
-<a name="binaryimage.read"></a><div id="binaryimage.read-def"><a name="L45"></a><tt class="py-lineno">45</tt> <a class="py-toggle" href="#" id="binaryimage.read-toggle" onclick="return toggle('binaryimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.binaryimage.binaryimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt [...]
-</div><div id="binaryimage.read-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="binaryimage.read-expanded"><a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> <tt class="py-docstring">""" </tt> </tt>
-<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"><tt class="py-docstring"> Read a binary image</tt> </tt>
-<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"><tt class="py-docstring"> Parameters : fname, dim1, dim2, offset, bytecode, endian</tt> </tt>
-<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"><tt class="py-docstring"> fname : file name : str</tt> </tt>
-<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"><tt class="py-docstring"> dim1,dim2 : image dimensions : int</tt> </tt>
-<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"><tt class="py-docstring"> offset : size of the : int </tt> </tt>
-<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"><tt class="py-docstring"> bytecode among : "int8","int16","int32","int64","uint8","uint16","uint32","uint64","float32","float64",...</tt> </tt>
-<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"><tt class="py-docstring"> endian among short or long endian ("<" or ">")</tt> </tt>
-<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-6', 'dim1', 'link-6');">dim1</a></tt> <tt class="py-op">=</tt> <tt id="link-7" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-na [...]
-<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-8', 'dim2', 'link-8');">dim2</a></tt> <tt class="py-op">=</tt> <tt id="link-9" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-na [...]
-<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-10', 'bytecode', 'link-10');">bytecode</a></tt> <tt class="py-op">=</tt> <tt id="link-11" class="py-name"><a title="fabio.edfimage.edf [...]
-<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> <tt class="py-name">f</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-string">"rb"</tt><tt class="py-op">)</tt> </tt>
-<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"> <tt id="link-12" class="py-name" targets="Variable fabio.edfimage.edfimage.dims=fabio.edfimage.edfimage-class.html#dims"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-12', 'dims', 'link-12');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-13" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="ret [...]
-<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"> <tt id="link-15" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-15', 'bpp', 'link-15');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-16" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-18', 'tostring', 'link-18');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"> <tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt id="link-19" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-19', 'dims', 'link-12');">dims</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt id="link-20" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" hr [...]
-<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"> </tt>
-<a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">offset</tt><tt class="py-op">)</tt> </tt>
-<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.O [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-22', 'read', 'link-22');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">size</tt><tt class="py-op">)</tt> </tt>
-<a name="L66"></a><tt class="py-lineno">66</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name" targets="Static Method fabio.binaryimage.binaryimage.swap_needed()=fabio.binaryimage.binaryimage-class.html#swap_needed,Method fabio.edfimage.Frame.swap_needed()=fabio.edfimage.Frame-class.html#swap_needed,Method fabio.edfimage.edfimage.swap_needed()=fabio.edfimage.edfimage-class.html#swap_needed [...]
-fabio.edfimage.Frame.swap_needed
-fabio.edfimage.edfimage.swap_needed" class="py-name" href="#" onclick="return doclink('link-23', 'swap_needed', 'link-23');">swap_needed</a></tt><tt class="py-op">(</tt><tt class="py-name">endian</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"> <tt id="link-24" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-24', 'data', 'link-24');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">rawData</tt><tt class="py-op">,</tt> <tt id="link-25" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-25', 'bytecode', 'link-10');">bytecode</ [...]
-<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"> <tt id="link-27" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-27', 'data', 'link-24');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">rawData</tt><tt class="py-op">,</tt> <tt id="link-28" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-28', 'bytecode', 'link-10');">bytecode</ [...]
-<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-30', 'data', 'link-24');">data</a></tt> <tt class="py-op">=</tt> <tt id="link-31" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-31', 'data', 'link-24');">data</a></tt> </tt>
-<a name="L71"></a><tt class="py-lineno">71</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L72"></a><tt class="py-lineno">72</tt> <tt class="py-line"> </tt>
-<a name="binaryimage.estimate_offset_value"></a><div id="binaryimage.estimate_offset_value-def"><a name="L73"></a><tt class="py-lineno">73</tt> <a class="py-toggle" href="#" id="binaryimage.estimate_offset_value-toggle" onclick="return toggle('binaryimage.estimate_offset_value');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.binaryimage.binaryimage-class.html#estimate_offset_value">estimate_offset_value</a><tt class="py-op">(</tt><tt cla [...]
-</div><div id="binaryimage.estimate_offset_value-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="binaryimage.estimate_offset_value-expanded"><a name="L74"></a><tt class="py-lineno">74</tt> <tt class="py-line"> <tt class="py-docstring">"Estimates the size of a file"</tt> </tt>
-<a name="L75"></a><tt class="py-lineno">75</tt> <tt class="py-line"> <tt class="py-keyword">with</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-string">"rb"</tt><tt class="py-op">)</tt> <tt class="py-keyword">as</tt> <tt class="py-name">f</tt><tt class="py-op">:</tt> </tt>
-<a name="L76"></a><tt class="py-lineno">76</tt> <tt class="py-line"> <tt id="link-32" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-32', 'bpp', 'link-15');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-33" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-33', 'len', 'link-16');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">numpy</ [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-35', 'tostring', 'link-18');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L77"></a><tt class="py-lineno">77</tt> <tt class="py-line"> <tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-36', 'dim1', 'link-6');">dim1</a></tt> <tt class="py-op">*</tt> <tt id="link-37" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-37', 'dim2', 'link-8');">dim2</a></t [...]
-<a name="L78"></a><tt class="py-lineno">78</tt> <tt class="py-line"> <tt class="py-name">totsize</tt> <tt class="py-op">=</tt> <tt id="link-39" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-39', 'len', 'link-16');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-40', 'read', 'link-22');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L79"></a><tt class="py-lineno">79</tt> <tt class="py-line"> <tt id="link-41" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-41', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">'total size (bytes): %s'</tt><tt class="py-op">,</tt> <tt class="py-name">totsize</tt><tt class="py-op">)</tt> </tt>
-<a name="L80"></a><tt class="py-lineno">80</tt> <tt class="py-line"> <tt id="link-42" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-42', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">'expected data size given parameters (bytes): %s'</tt><tt class="py-op">,</tt> <tt class="py-name">size</tt><tt class="py-op">)</tt> </tt>
-<a name="L81"></a><tt class="py-lineno">81</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-43', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">'estimation of the offset value (bytes): %s'</tt><tt class="py-op">,</tt> <tt class="py-name">totsize</tt> <tt class="py-op">-</tt> <tt class="py-name">size</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L82"></a><tt class="py-lineno">82</tt> <tt class="py-line"> </tt>
-<a name="binaryimage.write"></a><div id="binaryimage.write-def"><a name="L83"></a><tt class="py-lineno">83</tt> <a class="py-toggle" href="#" id="binaryimage.write-toggle" onclick="return toggle('binaryimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.binaryimage.binaryimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op" [...]
-</div><div id="binaryimage.write-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="binaryimage.write-expanded"><a name="L84"></a><tt class="py-lineno">84</tt> <tt class="py-line"> <tt class="py-keyword">with</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-string">"wb"</tt><tt class="py-op">)</tt> <tt class="py-keyword">as</tt [...]
-<a name="L85"></a><tt class="py-lineno">85</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryimag [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-44', 'write', 'link-44');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-45', 'data', 'link-24');">data</a></tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-46', 'tostring', 'link-18');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L86"></a><tt class="py-lineno">86</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.binaryimage.binaryimage-class.html b/doc/html/fabio.binaryimage.binaryimage-class.html
deleted file mode 100644
index 53be631..0000000
--- a/doc/html/fabio.binaryimage.binaryimage-class.html
+++ /dev/null
@@ -1,466 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.binaryimage.binaryimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.binaryimage-module.html">Module binaryimage</a> ::
- Class binaryimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.binaryimage.binaryimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class binaryimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">binaryimage</strong>
-</pre>
-
-<hr />
-<p>This simple library has been made for manipulating exotic/unknown
- files format.</p>
- <p>Binary files images are simple none-compressed 2D images only defined
- by their : data-type, dimensions, byte order and offset</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.binaryimage.binaryimage-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">*args</span>,
- <span class="summary-sig-arg">**kwargs</span>)</span><br />
- Set up initial values</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.binaryimage.binaryimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">dim1</span>,
- <span class="summary-sig-arg">dim2</span>,
- <span class="summary-sig-arg">offset</span>=<span class="summary-sig-default">0</span>,
- <span class="summary-sig-arg">bytecode</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">int32</code><code class="variable-quote">'</code></span>,
- <span class="summary-sig-arg">endian</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string"><</code><code class="variable-quote">'</code></span>)</span><br />
- Read a binary image Parameters : fname, dim1, dim2, offset, bytecode,
- endian fname : file name : str dim1,dim2 : image dimensions : int
- offset : size of the : int bytecode among :
- "int8","int16","int32","int64","uint8","uint16","uint32","uint64","float32","float64",...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="estimate_offset_value"></a><span class="summary-sig-name">estimate_offset_value</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">dim1</span>,
- <span class="summary-sig-arg">dim2</span>,
- <span class="summary-sig-arg">bytecode</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">int32</code><code class="variable-quote">'</code></span>)</span><br />
- Estimates the size of a file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage.estimate_offset_value">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.binaryimage.binaryimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- To be overwritten - write the file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">_readheader</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="swap_needed"></a><span class="summary-sig-name">swap_needed</span>(<span class="summary-sig-arg">endian</span>)</span><br />
- Decide if we need to byteswap</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage.swap_needed">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">*args</span>,
- <span class="sig-arg">**kwargs</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Set up initial values</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">dim1</span>,
- <span class="sig-arg">dim2</span>,
- <span class="sig-arg">offset</span>=<span class="sig-default">0</span>,
- <span class="sig-arg">bytecode</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">int32</code><code class="variable-quote">'</code></span>,
- <span class="sig-arg">endian</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string"><</code><code class="variable-quote">'</code></span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read a binary image Parameters : fname, dim1, dim2, offset, bytecode,
- endian fname : file name : str dim1,dim2 : image dimensions : int offset
- : size of the : int bytecode among :
- "int8","int16","int32","int64","uint8","uint16","uint32","uint64","float32","float64",...
- endian among short or long endian ("<" or
- ">")</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.binaryimage-pysrc.html#binaryimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>To be overwritten - write the file</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
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- <th> <a
- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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-</table>
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- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.bruker100image-module.html b/doc/html/fabio.bruker100image-module.html
deleted file mode 100644
index 93f846b..0000000
--- a/doc/html/fabio.bruker100image-module.html
+++ /dev/null
@@ -1,161 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.bruker100image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module bruker100image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.bruker100image-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module bruker100image</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.bruker100image-pysrc.html">source code</a></span></p>
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.bruker100image.bruker100image-class.html" class="summary-name">bruker100image</a>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("bruker100image")">logging.getLogger("bruker100image")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.bruker100image-pysrc.html b/doc/html/fabio.bruker100image-pysrc.html
deleted file mode 100644
index 2149e33..0000000
--- a/doc/html/fabio.bruker100image-pysrc.html
+++ /dev/null
@@ -1,344 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.bruker100image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module bruker100image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.bruker100image-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.bruker100image-module.html">Module fabio.bruker100image</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">math</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bruke [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"bruker100image"</tt><tt class="py-op">)</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">Image</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"> <tt id="link-1" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-1', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"PIL is not installed ... trying to do without"</tt><tt class="py-op">)</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> <tt class="py-name">Image</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"> </tt>
-<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-2" class="py-name" targets="Module fabio.brukerimage=fabio.brukerimage-module.html,Class fabio.brukerimage.brukerimage=fabio.brukerimage.brukerimage-class.html"><a title="fabio.brukerimage
-fabio.brukerimage.brukerimage" class="py-name" href="#" onclick="return doclink('link-2', 'brukerimage', 'link-2');">brukerimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-3" class="py-name"><a title="fabio.brukerimage
-fabio.brukerimage.brukerimage" class="py-name" href="#" onclick="return doclink('link-3', 'brukerimage', 'link-2');">brukerimage</a></tt> </tt>
-<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Module fabio.readbytestream=fabio.readbytestream-module.html,Function fabio.readbytestream.readbytestream()=fabio.readbytestream-module.html#readbytestream"><a title="fabio.readbytestream
-fabio.readbytestream.readbytestream" class="py-name" href="#" onclick="return doclink('link-4', 'readbytestream', 'link-4');">readbytestream</a></tt> </tt>
-<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> </tt>
-<a name="bruker100image"></a><div id="bruker100image-def"><a name="L14"></a><tt class="py-lineno">14</tt> <a class="py-toggle" href="#" id="bruker100image-toggle" onclick="return toggle('bruker100image');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.bruker100image.bruker100image-class.html">bruker100image</a><tt class="py-op">(</tt><tt class="py-base-class">brukerimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="bruker100image-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="bruker100image-expanded"><a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"> </tt>
-<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> </tt>
-<a name="bruker100image.toPIL16"></a><div id="bruker100image.toPIL16-def"><a name="L17"></a><tt class="py-lineno">17</tt> <a class="py-toggle" href="#" id="bruker100image.toPIL16-toggle" onclick="return toggle('bruker100image.toPIL16');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.bruker100image.bruker100image-class.html#toPIL16">toPIL16</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-para [...]
-</div><div id="bruker100image.toPIL16-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="bruker100image.toPIL16-expanded"><a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">Image</tt><tt class="py-op">:</tt> </tt>
-<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">"PIL is not installed !!! "</tt><tt class="py-op">)</tt> </tt>
-<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"> </tt>
-<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">filename</tt><tt class="py-op">:</tt> </tt>
-<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDimage.read()=fabio.OXDimage.OXDimage-class.html#re [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-5', 'read', 'link-5');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"> <tt class="py-name">PILimage</tt> <tt class="py-op">=</tt> <tt class="py-name">Image</tt><tt class="py-op">.</tt><tt class="py-name">frombuffer</tt><tt class="py-op">(</tt><tt class="py-string">"F"</tt><tt class="py-op">,</tt> </tt>
-<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-6', 'dim1', 'link-6');">dim1</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt> [...]
-<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-8', 'data', 'link-8');">data</a></tt><tt class="py-op">,</tt> </tt>
-<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt class="py-string">"raw"</tt><tt class="py-op">,</tt> </tt>
-<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt class="py-string">"F;16"</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">PILimage</tt> </tt>
-</div><a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> </tt>
-<a name="bruker100image.read"></a><div id="bruker100image.read-def"><a name="L30"></a><tt class="py-lineno">30</tt> <a class="py-toggle" href="#" id="bruker100image.read-toggle" onclick="return toggle('bruker100image.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.bruker100image.bruker100image-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt c [...]
-</div><div id="bruker100image.read-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="bruker100image.read-expanded"><a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt class="py-name">f</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-string">"rb"</tt><tt class="py-op">)</tt> </tt>
-<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._r [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-9', '_readheader', 'link-9');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">)</tt> </tt>
-<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> </tt>
-<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"> </tt>
-<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-name">rows</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-10', 'header', 'link-10');">heade [...]
-<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"> <tt class="py-name">cols</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-11', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NCOLS'</tt><tt class="py-op">]</tt> [...]
-<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"> <tt class="py-name">npixelb</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-12', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NPIXELB'</tt><tt class="py-op">] [...]
-<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"> <tt class="py-comment"># you had to read the Bruker docs to know this!</tt> </tt>
-<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> </tt>
-<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"> <tt class="py-comment"># We are now at the start of the image - assuming </tt> </tt>
-<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> <tt class="py-comment"># readbrukerheader worked</tt> </tt>
-<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> <tt class="py-comment"># size = rows * cols * npixelb</tt> </tt>
-<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-13', 'data', 'link-8');">data</a></tt> <tt class="py-op">=</tt> <tt id="link-14" class="py-name"><a title="fabio.readbytestream
-fabio.readbytestream.readbytestream" class="py-name" href="#" onclick="return doclink('link-14', 'readbytestream', 'link-4');">readbytestream</a></tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">,</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">rows</tt><tt class="py-op">,</tt> <tt class="py-name">cols</tt><tt class="py-op">,</tt> <tt cla [...]
-<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> <tt class="py-name">datatype</tt><tt class="py-op">=</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt> <tt class="py-name">signed</tt><tt class="py-op">=</tt><tt class="py-string">'n'</tt><tt class="py-op">,</tt> <tt class="py-name">swap</tt><tt class="py-op">=</tt><tt class="py-string">'n'</tt><tt class="py-op">)</tt> </tt>
-<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"> </tt>
-<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt class="py-name">noverfl</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-15', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NOVERFL'</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">spl [...]
-<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt class="py-comment">#read the set of "underflow pixels" - these will be completely </tt> </tt>
-<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> <tt class="py-comment"># disregarded for now</tt> </tt>
-<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"> <tt id="link-16" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-16', 'data', 'link-8');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-17', 'data', 'link-8');">data</a></tt> </tt>
-<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"> <tt class="py-name">k</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"> </tt>
-<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">k</tt> <tt class="py-op"><</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt><tt class="py-comment">#for the time being things - are done in 16 bits</tt> </tt>
-<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> <tt class="py-name">datatype</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">'1'</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">,</tt> </tt>
-<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt class="py-string">'2'</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">,</tt> </tt>
-<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> <tt class="py-string">'4'</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt> <tt class="py-op">}</tt><tt class="py-op">[</tt><tt class="py-op">(</tt><tt class="py-string">"%d"</tt> <tt class="py-op">%</tt> <tt class="py-number">2</tt> <tt class="py-op">**</tt> <tt class="py-name">k</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> <tt class="py-name">ar</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-18', 'read', 'link-5');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">noverfl</tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-number">2</tt> <tt class="py-op">**</tt> <tt class="py-name">k</tt><tt class="py-op">)</tt><tt clas [...]
-<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> <tt class="py-name">datatype</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"> <tt class="py-comment">#insert the the overflow pixels in the image array:</tt> </tt>
-<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"> <tt class="py-comment">#this is probably a memory intensive way of doing this - </tt> </tt>
-<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"> <tt class="py-comment"># might be done in a more clever way</tt> </tt>
-<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"> <tt class="py-name">lim</tt> <tt class="py-op">=</tt> <tt class="py-number">2</tt> <tt class="py-op">**</tt> <tt class="py-op">(</tt><tt class="py-number">8</tt> <tt class="py-op">*</tt> <tt class="py-name">k</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt> </tt>
-<a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"> <tt class="py-comment">#generate an array comprising of the indices into data.ravel() </tt> </tt>
-<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"> <tt class="py-comment"># where its value equals lim.</tt> </tt>
-<a name="L66"></a><tt class="py-lineno">66</tt> <tt class="py-line"> <tt class="py-name">M</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">compress</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">equal</tt><tt class="py-op">(</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-19', 'data', 'link-8');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">ravel</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">lim</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">arange</tt><tt class="py-op">(</tt><tt class="py-name">rows</tt> <tt class="py-op">*</tt> < [...]
-<a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"> <tt class="py-comment">#now put values from ar into those indices</tt> </tt>
-<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">put</tt><tt class="py-op">(</tt><tt id="link-20" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-20', 'data', 'link-8');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">ravel</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">M</tt><tt class="py-op">,</tt> <tt class="py-name">ar</tt><tt class="py-op">)</tt> </tt>
-<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"> <tt class="py-name">padding</tt> <tt class="py-op">=</tt> <tt class="py-number">16</tt> <tt class="py-op">*</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">math</tt><tt class="py-op">.</tt><tt class="py-name">ceil</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">noverfl</tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt cl [...]
-<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">noverfl</tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-number">2</tt> <tt class="py-op">**</tt> <tt class="py-name">k</tt><tt class="py-op">)</tt> </tt>
-<a name="L71"></a><tt class="py-lineno">71</tt> <tt class="py-line"> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">padding</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L72"></a><tt class="py-lineno">72</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">noverfl</tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-string">" bytes read + %d bytes padding"</tt> <tt class="py-op">%</tt> <tt class="py-name">padding</tt> </tt>
-<a name="L73"></a><tt class="py-lineno">73</tt> <tt class="py-line"> <tt class="py-name">k</tt> <tt class="py-op">=</tt> <tt class="py-name">k</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
-<a name="L74"></a><tt class="py-lineno">74</tt> <tt class="py-line"> </tt>
-<a name="L75"></a><tt class="py-lineno">75</tt> <tt class="py-line"> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L76"></a><tt class="py-lineno">76</tt> <tt class="py-line"> </tt>
-<a name="L77"></a><tt class="py-lineno">77</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-21', 'dim1', 'link-6');">dim1</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href= [...]
-<a name="L78"></a><tt class="py-lineno">78</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-23', 'dim1', 'link-6');">dim1</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-n [...]
-<a name="L79"></a><tt class="py-lineno">79</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-25', 'resetvals', 'link-25');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L80"></a><tt class="py-lineno">80</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div></div><a name="L81"></a><tt class="py-lineno">81</tt> <tt class="py-line"> </tt>
-<a name="L82"></a><tt class="py-lineno">82</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">'__main__'</tt><tt class="py-op">:</tt> </tt>
-<a name="L83"></a><tt class="py-lineno">83</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">sys</tt><tt class="py-op">,</tt> <tt class="py-name">time</tt> </tt>
-<a name="L84"></a><tt class="py-lineno">84</tt> <tt class="py-line"> <tt class="py-name">I</tt> <tt class="py-op">=</tt> <tt id="link-26" class="py-name" targets="Module fabio.bruker100image=fabio.bruker100image-module.html,Class fabio.bruker100image.bruker100image=fabio.bruker100image.bruker100image-class.html"><a title="fabio.bruker100image
-fabio.bruker100image.bruker100image" class="py-name" href="#" onclick="return doclink('link-26', 'bruker100image', 'link-26');">bruker100image</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L85"></a><tt class="py-lineno">85</tt> <tt class="py-line"> <tt class="py-name">b</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">clock</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L86"></a><tt class="py-lineno">86</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-op">(</tt><tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L87"></a><tt class="py-lineno">87</tt> <tt class="py-line"> <tt class="py-name">I</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-27', 'read', 'link-5');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L88"></a><tt class="py-lineno">88</tt> <tt class="py-line"> <tt class="py-name">r</tt> <tt class="py-op">=</tt> <tt class="py-name">I</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Method fabio.bruker100image.bruker100image.toPIL16()=fabio.bruker100image.bruker100image-class.html#toPIL16,Method fabio.fabioimage.fabioimage.toPIL16()=fabio.fabioimage.fabioimage-class.html#toPIL16"><a title="fabio.bruker100image.bruker100image.toPIL16
-fabio.fabioimage.fabioimage.toPIL16" class="py-name" href="#" onclick="return doclink('link-28', 'toPIL16', 'link-28');">toPIL16</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L89"></a><tt class="py-lineno">89</tt> <tt class="py-line"> <tt class="py-name">I</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method fabio.fabioimage.fabioimage.rebin()=fabio.fabioimage.fabioimage-class.html#rebin"><a title="fabio.fabioimage.fabioimage.rebin" class="py-name" href="#" onclick="return doclink('link-29', 'rebin', 'link-29');">rebin</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-nu [...]
-<a name="L90"></a><tt class="py-lineno">90</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">": max=%d, min=%d, mean=%.2e, stddev=%.2e"</tt><tt class="py-op">)</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> </tt>
-<a name="L91"></a><tt class="py-lineno">91</tt> <tt class="py-line"> <tt class="py-name">I</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name" targets="Method fabio.fabioimage.fabioimage.getmax()=fabio.fabioimage.fabioimage-class.html#getmax"><a title="fabio.fabioimage.fabioimage.getmax" class="py-name" href="#" onclick="return doclink('link-30', 'getmax', 'link-30');">getmax</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class=" [...]
-<a name="L92"></a><tt class="py-lineno">92</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'integrated intensity (%d %d %d %d) =%.3f'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> </tt>
-<a name="L93"></a><tt class="py-lineno">93</tt> <tt class="py-line"> <tt class="py-number">10</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-number">40</tt><tt class="py-op">,</tt> <tt class="py-name">I</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Method fabio.fabioimage.fabioimage.integrate_area()=fabio.fabioimage.fabioimage-class.html#integrate_ar [...]
-<a name="L94"></a><tt class="py-lineno">94</tt> <tt class="py-line"> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L95"></a><tt class="py-lineno">95</tt> <tt class="py-line"> <tt class="py-name">e</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">clock</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L96"></a><tt class="py-lineno">96</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-op">(</tt><tt class="py-name">e</tt> <tt class="py-op">-</tt> <tt class="py-name">b</tt><tt class="py-op">)</tt> </tt>
-<a name="L97"></a><tt class="py-lineno">97</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
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- bgcolor="#a0c0ff" cellspacing="0">
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- href="fabio-module.html">Home</a> </th>
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- href="help.html">Help</a> </th>
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.bruker100image.bruker100image-class.html b/doc/html/fabio.bruker100image.bruker100image-class.html
deleted file mode 100644
index 222f7be..0000000
--- a/doc/html/fabio.bruker100image.bruker100image-class.html
+++ /dev/null
@@ -1,375 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.bruker100image.bruker100image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.bruker100image-module.html">Module bruker100image</a> ::
- Class bruker100image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.bruker100image.bruker100image-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class bruker100image</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.bruker100image-pysrc.html#bruker100image">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <a href="fabio.brukerimage.brukerimage-class.html">brukerimage.brukerimage</a> --+
- |
- <strong class="uidshort">bruker100image</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.bruker100image.bruker100image-class.html#toPIL16" class="summary-sig-name">toPIL16</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filename</span>=<span class="summary-sig-default">None</span>)</span><br />
- Convert to Python Imaging Library 16 bit greyscale image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.bruker100image-pysrc.html#bruker100image.toPIL16">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.bruker100image.bruker100image-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in and unpack the pixels (including overflow table</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.bruker100image-pysrc.html#bruker100image.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.brukerimage.brukerimage-class.html">brukerimage.brukerimage</a></code></b>:
- <code><a href="fabio.brukerimage.brukerimage-class.html#write">write</a></code>,
- <code><a href="fabio.brukerimage.brukerimage-class.html#write2">write2</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.brukerimage.brukerimage-class.html">brukerimage.brukerimage</a></code></b> (private):
- <code><a href="fabio.brukerimage.brukerimage-class.html#_readheader" onclick="show_private();">_readheader</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.brukerimage.brukerimage-class.html">brukerimage.brukerimage</a></code></b>:
- <code><a href="fabio.brukerimage.brukerimage-class.html#__headerstring__">__headerstring__</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
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- <tr valign="top">
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- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="toPIL16"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">toPIL16</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">filename</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.bruker100image-pysrc.html#bruker100image.toPIL16">source code</a></span>
- </td>
- </tr></table>
-
- <p>Convert to Python Imaging Library 16 bit greyscale image</p>
- <p>FIXME - this should be handled by the libraries now</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#toPIL16">fabioimage.fabioimage.toPIL16</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.bruker100image-pysrc.html#bruker100image.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in and unpack the pixels (including overflow table</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.brukerimage-module.html b/doc/html/fabio.brukerimage-module.html
deleted file mode 100644
index aff9062..0000000
--- a/doc/html/fabio.brukerimage-module.html
+++ /dev/null
@@ -1,212 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.brukerimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
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- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module brukerimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.brukerimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module brukerimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.brukerimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
-Based on: openbruker,readbruker, readbrukerheader functions in the opendata
- module of ImageD11 written by Jon Wright, ESRF, Grenoble, France
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.brukerimage.brukerimage-class.html" class="summary-name">brukerimage</a><br />
- Read and eventually write ID11 bruker (eg smart6500) images
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Functions</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="test"></a><span class="summary-sig-name">test</span>()</span><br />
- a testcase</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.brukerimage-pysrc.html#test">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("brukerimage")">logging.getLogger("brukerimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
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- >http://epydoc.sourceforge.net</a>
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-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.brukerimage-pysrc.html b/doc/html/fabio.brukerimage-pysrc.html
deleted file mode 100644
index cedb721..0000000
--- a/doc/html/fabio.brukerimage-pysrc.html
+++ /dev/null
@@ -1,558 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.brukerimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
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- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module brukerimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.brukerimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.brukerimage-module.html">Module fabio.brukerimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring">Based on: openbruker,readbruker, readbrukerheader functions in the opendata</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring"> module of ImageD11 written by Jon Wright, ESRF, Grenoble, France</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"brukerimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name" targets="Module fabio.readbytestream=fabio.readbytestream-module.html,Function fabio.readbytestream.readbytestream()=fabio.readbytestream-module.html#readbytestream"><a title="fabio.readbytestream
-fabio.readbytestream.readbytestream" class="py-name" href="#" onclick="return doclink('link-3', 'readbytestream', 'link-3');">readbytestream</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name"><a title="fabio.readbytestream
-fabio.readbytestream.readbytestream" class="py-name" href="#" onclick="return doclink('link-4', 'readbytestream', 'link-3');">readbytestream</a></tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> </tt>
-<a name="brukerimage"></a><div id="brukerimage-def"><a name="L22"></a><tt class="py-lineno"> 22</tt> <a class="py-toggle" href="#" id="brukerimage-toggle" onclick="return toggle('brukerimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.brukerimage.brukerimage-class.html">brukerimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="brukerimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="brukerimage-expanded"><a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-docstring"> Read and eventually write ID11 bruker (eg smart6500) images</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-comment"># needed if you feel like writing - see ImageD11/scripts/edf2bruker.py</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt id="link-5" class="py-name" targets="Variable fabio.brukerimage.brukerimage.__headerstring__=fabio.brukerimage.brukerimage-class.html#__headerstring__"><a title="fabio.brukerimage.brukerimage.__headerstring__" class="py-name" href="#" onclick="return doclink('link-5', '__headerstring__', 'link-5');">__headerstring__</a></tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> </tt>
-<a name="brukerimage._readheader"></a><div id="brukerimage._readheader-def"><a name="L32"></a><tt class="py-lineno"> 32</tt> <a class="py-toggle" href="#" id="brukerimage._readheader-toggle" onclick="return toggle('brukerimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.brukerimage.brukerimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class=" [...]
-</div><div id="brukerimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="brukerimage._readheader-expanded"><a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-docstring"> the bruker format uses 80 char lines in key : value format</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt class="py-docstring"> In the fisrt 512*5 bytes of the header there should be a </tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-docstring"> HDRBLKS key, whose value denotes how many 512 byte blocks </tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-docstring"> are in the total header. The header is always n*5*512 bytes,</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"><tt class="py-docstring"> otherwise it wont contain whole key: value pairs</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-name">lump</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-6', 'read', 'link-6');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">512</tt> <tt class="py-op">*</tt> <tt class="py-number">5</tt><tt class="py-op">)</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name"><a title="fabio.brukerimage.brukerimage.__headerstring__" class="py-name" href="#" onclick="return doclink('link-7', '__headerstring__', 'link-5');">__headerstring__</a></tt> <tt class="py-op">+=</tt> <tt class="py-name">lump</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt id="link-8" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-8', 'i', 'link-8');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">80</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-9', 'header', 'link-9');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt id="link-10" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-10', 'i', 'link-8');">i</a></tt> <tt class="py-op"><</tt> <tt class="py-number">512</tt> <tt class="py-op">*</tt> <tt class="py-number">5</tt><tt class="py-op">:</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">lump</tt><tt class="py-op">[</tt><tt id="link-11" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-11', 'i', 'link-8');">i</a></tt> <tt class="py-op">-</tt> <tt class="py-number">80</tt><tt class="py-op">:</tt> <tt id="link-12" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick= [...]
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt id="link-13" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-13', 'key', 'link-13');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">lump</tt><tt class="py-op">[</tt><tt id="link-14" class="py-name"><a title="f [...]
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt id="link-16" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-16', 'key', 'link-13');">key</a></tt> <tt class="py-op">=</tt> <tt id="link-17" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-17', 'key', 'link-13');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="p [...]
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">val</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-18', 'header', 'link-9');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt id="link-19" class="py-name"><a title="fabio.fabioutils.key" class [...]
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-comment"># append lines if key already there</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-20', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt id="link-21" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-21', 'key', 'link-13');">key</a>< [...]
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-24', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt id="link-25" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-25', 'key', 'link-13');">key</a>< [...]
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimage.edfimage-class.html#header_keys"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-26', 'header_keys', 'link-26');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt [...]
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt id="link-28" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-28', 'i', 'link-8');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-29" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-29', 'i', 'link-8');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">80</tt> <tt class=" [...]
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-comment"># we must have read this in the first 512 bytes.</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-name">nhdrblks</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-30', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'HDRBLKS'</tt><tt class="py-op"> [...]
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-comment"># Now read in the rest of the header blocks, appending </tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-name">rest</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-31', 'read', 'link-6');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">512</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-name">nhdrblks</tt> <tt class="py-op">-</tt> <tt class="py-number">5</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="fabio.brukerimage.brukerimage.__headerstring__" class="py-name" href="#" onclick="return doclink('link-32', '__headerstring__', 'link-5');">__headerstring__</a></tt> <tt class="py-op">+=</tt> <tt class="py-name">rest</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-name">lump</tt> <tt class="py-op">=</tt> <tt class="py-name">lump</tt><tt class="py-op">[</tt><tt id="link-33" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-33', 'i', 'link-8');">i</a></tt> <tt class="py-op">-</tt> <tt class="py-number">80</tt><tt class="py-op">:</tt> <tt class="py-number">512</tt><tt class="py-op">]</tt> <tt class="py-op">+</ [...]
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt id="link-34" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-34', 'i', 'link-8');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">80</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-name">j</tt> <tt class="py-op">=</tt> <tt class="py-number">512</tt> <tt class="py-op">*</tt> <tt class="py-name">nhdrblks</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt id="link-35" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-35', 'i', 'link-8');">i</a></tt> <tt class="py-op"><</tt> <tt class="py-name">j</tt> <tt class="py-op">:</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">lump</tt><tt class="py-op">[</tt><tt id="link-36" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-36', 'i', 'link-8');">i</a></tt> <tt class="py-op">-</tt> <tt class="py-number">80</tt><tt class="py-op">:</tt> <tt id="link-37" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick= [...]
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt id="link-38" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-38', 'key', 'link-13');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">lump</tt><tt class="py-op">[</tt><tt id="link-39" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link [...]
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt id="link-41" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-41', 'key', 'link-13');">key</a></tt> <tt class="py-op">=</tt> <tt id="link-42" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-42', 'key', 'link-13');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="p [...]
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">val</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-43', 'header', 'link-9');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt id="link-44" class="py-name"><a title="fabio.fabioutils.key" class [...]
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-45', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt id="link-46" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-46', 'key', 'link-13');">key</a>< [...]
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-49', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt id="link-50" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-50', 'key', 'link-13');">key</a>< [...]
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-51', 'header_keys', 'link-26');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-52" class="py-name"><a title="fabio.fabioutils.key" class="py-name" h [...]
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt id="link-53" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-53', 'i', 'link-8');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-54" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-54', 'i', 'link-8');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">80</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-comment"># make a (new) header item called "datastart"</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-55', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'datastart'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">te [...]
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-comment">#set the image dimensions</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-56', 'dim1', 'link-56');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt [...]
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-58', 'dim2', 'link-58');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt [...]
-</div><a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> </tt>
-<a name="brukerimage.read"></a><div id="brukerimage.read-def"><a name="L81"></a><tt class="py-lineno"> 81</tt> <a class="py-toggle" href="#" id="brukerimage.read-toggle" onclick="return toggle('brukerimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.brukerimage.brukerimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</t [...]
-</div><div id="brukerimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="brukerimage.read-expanded"><a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"><tt class="py-docstring"> Read in and unpack the pixels (including overflow table</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-60', '_open', 'link-60');">_open</a></tt><tt class="py-op">(</tt><tt clas [...]
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage. [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-61', '_readheader', 'link-61');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-name">rows</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-62', 'dim1', 'link-56');">dim1</a></tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-name">cols</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-63', 'dim2', 'link-58');">dim2</a></tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-comment"># you had to read the Bruker docs to know this!</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-name">npixelb</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-64', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NPIXELB'</tt><tt class="py-o [...]
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-name">errmsg</tt> <tt class="py-op">=</tt> <tt class="py-string">"length "</tt> <tt class="py-op">+</tt> <tt id="link-65" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-65', 'str', 'link-65');">str</a></tt><tt class="py-op">(</tt><tt id="link-66" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-66', 'len', 'link-66');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py [...]
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">byt</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-68', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NPIXELB'</tt><tt class="py-op">]</tt><tt class [...]
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">errmsg</tt> <tt class="py-op">+=</tt> <tt class="py-string">"char: "</tt> <tt class="py-op">+</tt> <tt id="link-69" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-69', 'str', 'link-65');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">byt</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">" "</tt> <tt class="py-op">+</tt> <tt id="link-70" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-70', 'str', 'link-65');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">ord</tt><tt class="py-op">(</tt><tt class="py-name">byt</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"\n"</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt id="link-71" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-71', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-name">errmsg</tt><tt class="py-op">)</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-72', 'data', 'link-72');">data</a></tt> <tt class="py-op">=</tt> <tt id="link-73" class="py-name"><a title="fabio.readbytestream
-fabio.readbytestream.readbytestream" class="py-name" href="#" onclick="return doclink('link-73', 'readbytestream', 'link-3');">readbytestream</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">,</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">rows</tt><tt class="py-op">,</tt> <tt class="py-name">cols</tt><tt class="py-op">,</tt> <tt class="py-name">npixelb</tt><tt class="py-op">,</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-name">datatype</tt><tt class="py-op">=</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-name">signed</tt><tt class="py-op">=</tt><tt class="py-string">'n'</tt><tt class="py-op">,</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-name">swap</tt><tt class="py-op">=</tt><tt class="py-string">'n'</tt><tt class="py-op">)</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-comment">#handle overflows</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-name">nov</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-74', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'NOVERFL'</tt><tt class="py-op">]</t [...]
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nov</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> <tt class="py-comment"># Read in the overflows</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-comment"># need at least int32 sized data I guess - can reach 2^21</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-75', 'data', 'link-72');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-76', 'data', 'link-72');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">)</tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-comment"># 16 character overflows:</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-comment"># 9 characters of intensity</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-comment"># 7 character position</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-77" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-77', 'i', 'link-8');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">nov</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">ovfl</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-78', 'read', 'link-6');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">16</tt><tt class="py-op">)</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">intensity</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">ovfl</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">:</tt> <tt class="py-number">9</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">position</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">ovfl</tt><tt class="py-op">[</tt><tt class="py-number">9</tt><tt class="py-op">:</tt> <tt class="py-number">16</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-comment"># relies on python style modulo being always +</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">row</tt> <tt class="py-op">=</tt> <tt class="py-name">position</tt> <tt class="py-op">%</tt> <tt class="py-name">rows</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-comment"># relies on truncation down</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">col</tt> <tt class="py-op">=</tt> <tt class="py-name">position</tt> <tt class="py-op">/</tt> <tt class="py-name">rows</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-comment">#print "Overflow ", r, c, intensity, position,\</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-comment"># self.data[r,c],self.data[c,r]</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-79', 'data', 'link-72');">data</a></tt><tt class="py-op">[</tt><tt class="py-name">col</tt><tt class="py-op">,</tt> <tt class="py-name">row</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">intensity</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-80', 'resetvals', 'link-80');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> </tt>
-<a name="brukerimage.write"></a><div id="brukerimage.write-def"><a name="L136"></a><tt class="py-lineno">136</tt> <a class="py-toggle" href="#" id="brukerimage.write-toggle" onclick="return toggle('brukerimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.brukerimage.brukerimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-o [...]
-</div><div id="brukerimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="brukerimage.write-expanded"><a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"><tt class="py-docstring"> Writes the image as EDF</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"><tt class="py-docstring"> FIXME - this should call edfimage.write if that is wanted?</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"><tt class="py-docstring"> eg: obj = edfimage(data = self.data, header = self.header)</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"><tt class="py-docstring"> obj.write(fname)</tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"><tt class="py-docstring"> or maybe something like: edfimage.write(self, fname)</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt id="link-81" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-81', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"***warning***: call to unifinished "</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-string">"brukerimage.write. This will write the file"</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-name">fname</tt> <tt class="py-op">+</tt> <tt class="py-string">"as an edf-file"</tt><tt class="py-op">)</tt> </tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> </tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-name">outfile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-82', '_open', 'link-60');">_open</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-string">"wb"</tt><tt class="py-op"> [...]
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryimage- [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-83', 'write', 'link-83');">write</a></tt><tt class="py-op">(</tt><tt class="py-string">'{\n'</tt><tt class="py-op">)</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt id="link-84" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-84', 'i', 'link-8');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">4</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">k</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-85', 'header_keys', 'link-26');">header_keys</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-string">"%s = %s;\n"</tt><tt class="py-op">)</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">k</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" [...]
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt id="link-87" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-87', 'i', 'link-8');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-88" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-88', 'i', 'link-8');">i</a></tt> <tt class="py-op">+</tt> <tt id="link-89" class="py-name"><a title="fabio.file_ser [...]
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-90', 'write', 'link-83');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">out</tt><tt class="py-op">)</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">4096</tt> <tt class="py-op">-</tt> <tt id="link-91" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-91', 'i', 'link-8');">i</a></tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class="py-string">' '</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-92', 'write', 'link-83');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">out</tt><tt class="py-op">)</tt> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-93', 'write', 'link-83');">write</a></tt><tt class="py-op">(</tt><tt class="py-string">'}\n'</tt><tt class="py-op">)</tt> </tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-comment"># Assumes a short-circuiting if / or ...</tt> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-94" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-94', 'header', 'link-9');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt class="py-string">"ByteOrder"</tt><tt cla [...]
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-95', 'header', 'link-9');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"ByteOrder"</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"LowByteFirst"</tt><tt class="py-op">:</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-96', 'write', 'link-83');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-97" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-97', 'data', 'link-72');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-98" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,Method fabio.fabioutils.filename_objec [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-98', 'tostring', 'link-98');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-99" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-99', 'write', 'link-83');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-100', 'data', 'link-72');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-101" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-101', 'tostring', 'link-98');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> </tt>
-<a name="brukerimage.write2"></a><div id="brukerimage.write2-def"><a name="L168"></a><tt class="py-lineno">168</tt> <a class="py-toggle" href="#" id="brukerimage.write2-toggle" onclick="return toggle('brukerimage.write2');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.brukerimage.brukerimage-class.html#write2">write2</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class [...]
-</div><div id="brukerimage.write2-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="brukerimage.write2-expanded"><a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-docstring">""" FIXME: what is this? """</tt> </tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-</div></div><a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> </tt>
-<a name="test"></a><div id="test-def"><a name="L174"></a><tt class="py-lineno">174</tt> <a class="py-toggle" href="#" id="test-toggle" onclick="return toggle('test');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.brukerimage-module.html#test">test</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="test-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test-expanded"><a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-docstring">""" a testcase """</tt> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">sys</tt><tt class="py-op">,</tt> <tt class="py-name">time</tt> </tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-name">img</tt> <tt class="py-op">=</tt> <tt id="link-102" class="py-name" targets="Module fabio.brukerimage=fabio.brukerimage-module.html,Class fabio.brukerimage.brukerimage=fabio.brukerimage.brukerimage-class.html"><a title="fabio.brukerimage
-fabio.brukerimage.brukerimage" class="py-name" href="#" onclick="return doclink('link-102', 'brukerimage', 'link-102');">brukerimage</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">clock</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">filename</tt> <tt class="py-keyword">in</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-103', 'read', 'link-6');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-name">res</tt> <tt class="py-op">=</tt> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-104" class="py-name" targets="Method fabio.bruker100image.bruker100image.toPIL16()=fabio.bruker100image.bruker100image-class.html#toPIL16,Method fabio.fabioimage.fabioimage.toPIL16()=fabio.fabioimage.fabioimage-class.html#toPIL16"><a title="fabio.bruker100image.bruker100image.toPIL16
-fabio.fabioimage.fabioimage.toPIL16" class="py-name" href="#" onclick="return doclink('link-104', 'toPIL16', 'link-104');">toPIL16</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-105" class="py-name" targets="Method fabio.fabioimage.fabioimage.rebin()=fabio.fabioimage.fabioimage-class.html#rebin"><a title="fabio.fabioimage.fabioimage.rebin" class="py-name" href="#" onclick="return doclink('link-105', 'rebin', 'link-105');">rebin</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class [...]
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">filename</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">": max=%d, min=%d, mean=%.2e, stddev=%.2e"</tt><tt class="py-op">)</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-106" class="py-name" targets="Method fabio.fabioimage.fabioimage.getmax()=fabio.fabioimage.fabioimage-class.html#getmax"><a title="fabio.fabioimage.fabioimage.getmax" class="py-name" href="#" onclick="return doclink('link-106', 'getmax', 'link-106');">getmax</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt [...]
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'integrated intensity (%d %d %d %d) =%.3f'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-number">10</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-number">20</tt><tt class="py-op">,</tt> <tt class="py-number">40</tt><tt class="py-op">,</tt> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-110" class="py-name" targets="Method fabio.fabioimage.fabioimage.integrate_area()=fabio.fabioimage.fabioimage-class.html#integra [...]
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-name">end</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">clock</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-op">(</tt><tt class="py-name">end</tt> <tt class="py-op">-</tt> <tt class="py-name">start</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> </tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">'__main__'</tt><tt class="py-op">:</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt id="link-111" class="py-name" targets="Function fabio.adscimage.test()=fabio.adscimage-module.html#test,Function fabio.brukerimage.test()=fabio.brukerimage-module.html#test,Function fabio.fabioimage.test()=fabio.fabioimage-module.html#test"><a title="fabio.adscimage.test
-fabio.brukerimage.test
-fabio.fabioimage.test" class="py-name" href="#" onclick="return doclink('link-111', 'test', 'link-111');">test</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
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- <th> <a
- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:28 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
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-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.brukerimage.brukerimage-class.html b/doc/html/fabio.brukerimage.brukerimage-class.html
deleted file mode 100644
index 661da21..0000000
--- a/doc/html/fabio.brukerimage.brukerimage-class.html
+++ /dev/null
@@ -1,449 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.brukerimage.brukerimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.brukerimage-module.html">Module brukerimage</a> ::
- Class brukerimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.brukerimage.brukerimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class brukerimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.brukerimage-pysrc.html#brukerimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">brukerimage</strong>
-</pre>
-
-<dl><dt>Known Subclasses:</dt>
-<dd>
- <ul class="subclass-list">
-<li><a href="fabio.bruker100image.bruker100image-class.html">bruker100image.bruker100image</a></li> </ul>
-</dd></dl>
-
-<hr />
-<p>Read and eventually write ID11 bruker (eg smart6500) images</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.brukerimage.brukerimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- the bruker format uses 80 char lines in key : value format In the
- fisrt 512*5 bytes of the header there should be a HDRBLKS key, whose
- value denotes how many 512 byte blocks are in the total header.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.brukerimage-pysrc.html#brukerimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.brukerimage.brukerimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in and unpack the pixels (including overflow table</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.brukerimage-pysrc.html#brukerimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.brukerimage.brukerimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- Writes the image as EDF...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.brukerimage-pysrc.html#brukerimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="write2"></a><span class="summary-sig-name">write2</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- FIXME: what is this?</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.brukerimage-pysrc.html#brukerimage.write2">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__headerstring__"></a><span class="summary-name">__headerstring__</span> = <code title="''"><code class="variable-quote">'</code><code class="variable-string"></code><code class="variable-quote">'</code></code>
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.brukerimage-pysrc.html#brukerimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>the bruker format uses 80 char lines in key : value format In the
- fisrt 512*5 bytes of the header there should be a HDRBLKS key, whose
- value denotes how many 512 byte blocks are in the total header. The
- header is always n*5*512 bytes, otherwise it wont contain whole key:
- value pairs</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.brukerimage-pysrc.html#brukerimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in and unpack the pixels (including overflow table</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.brukerimage-pysrc.html#brukerimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Writes the image as EDF
-FIXME - this should call edfimage.write if that is wanted?
-eg: obj = edfimage(data = self.data, header = self.header)
- obj.write(fname)
- or maybe something like: edfimage.write(self, fname)
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.byte_offset-module.html b/doc/html/fabio.byte_offset-module.html
deleted file mode 100644
index 972d32c..0000000
--- a/doc/html/fabio.byte_offset-module.html
+++ /dev/null
@@ -1,158 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.byte_offset</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
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- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
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- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module byte_offset
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.byte_offset-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module byte_offset</h1><p class="nomargin-top"></p>
-<p>Authors: Jerome Kieffer, ESRF Email:
- jerome.kieffer at esrf.eu</p>
- <p>Cif Binary Files images are 2D images written by the Pilatus detector
- and others. They use a modified (simplified) byte-offset algorithm. This
- file contains the decompression function from a string to an int64 numpy
- array.</p>
- <p>This is Cython: convert it to pure C then compile it with gcc $ cython
- byte_offset.pyx</p>
-
-<hr />
-<div class="fields"> <p><strong>Author:</strong>
- J\xc3\xa9r\xc3\xb4me Kieffer
- </p>
- <p><strong>Contact:</strong>
- jerome.kieffer at esrf.eu
- </p>
- <p><strong>Copyright:</strong>
- 2010, European Synchrotron Radiation Facility, Grenoble, France
- </p>
- <p><strong>License:</strong>
- GPLv3+
- </p>
-</div><!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__test__"></a><span class="summary-name">__test__</span> = <code title="{}"><code class="variable-group">{</code><code class="variable-group">}</code></code>
- </td>
- </tr>
-</table>
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- </td>
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- >http://epydoc.sourceforge.net</a>
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- <!--
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.cbfimage-module.html b/doc/html/fabio.cbfimage-module.html
deleted file mode 100644
index 945a4b0..0000000
--- a/doc/html/fabio.cbfimage-module.html
+++ /dev/null
@@ -1,296 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.cbfimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- href="fabio-module.html">Home</a> </th>
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-
- <th class="navbar" width="100%"></th>
- </tr>
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-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module cbfimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.cbfimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module cbfimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.cbfimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr
-
-Cif Binary Files images are 2D images written by the Pilatus detector and others.
-They use a modified (simplified) byte-offset algorithm.
-
-CIF is a library for manipulating Crystallographic information files and tries
-to conform to the specification of the IUCR
-
-</pre>
-
-<hr />
-<div class="fields"> <p><strong>Author:</strong>
- J\xc3\xa9r\xc3\xb4me Kieffer
- </p>
- <p><strong>Contact:</strong>
- jerome.kieffer at esrf.eu
- </p>
- <p><strong>Copyright:</strong>
- European Synchrotron Radiation Facility, Grenoble, France
- </p>
- <p><strong>License:</strong>
- GPLv3+
- </p>
-</div><!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.cbfimage.cbfimage-class.html" class="summary-name">cbfimage</a><br />
- Read the Cif Binary File data format
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.cbfimage.CIF-class.html" class="summary-name">CIF</a><br />
- This is the CIF class, it represents the CIF dictionary; and as a a
- python dictionary thus inherits from the dict built in class.
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("cbfimage")">logging.getLogger("cbfimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.cbfimage-module.html#DATA_TYPES" class="summary-name">DATA_TYPES</a> = <code title="{'signed 16-bit integer': <type 'numpy.int16'>,
- 'signed 32-bit integer': <type 'numpy.int32'>,
- 'signed 64-bit integer': <type 'numpy.int64'>,
- 'signed 8-bit integer': <type 'numpy.int8'>}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">signed 16-bit integer</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.int16'><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.cbfimage-module.html#MINIMUM_KEYS" class="summary-name">MINIMUM_KEYS</a> = <code title="['X-Binary-Size-Fastest-Dimension',
- 'ByteOrder',
- 'Data type',
- 'X dimension',
- 'Y dimension',
- 'Number of readouts']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">X-Binary-Size-Fastest-Dimension</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">ByteOrder</code><code class="variable-quote">'</code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="STARTER"></a><span class="summary-name">STARTER</span> = <code title="'\x0c\x1a\x04\xd5'"><code class="variable-quote">'</code><code class="variable-string">\x0c\x1a\x04\xd5</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="PADDING"></a><span class="summary-name">PADDING</span> = <code title="512">512</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="DATA_TYPES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">DATA_TYPES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">signed 16-bit integer</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.int16'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">signed 32-bit integer</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.int32'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">signed 64-bit integer</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.int64'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">signed 8-bit integer</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.int8'><code class="variable-group">}</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="MINIMUM_KEYS"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">MINIMUM_KEYS</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">X-Binary-Size-Fastest-Dimension</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">ByteOrder</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Data type</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">X dimension</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Y dimension</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Number of readouts</code><code class="variable-quote">'</code><code class="variable-group">]</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
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- >http://epydoc.sourceforge.net</a>
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- <!--
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.cbfimage-pysrc.html b/doc/html/fabio.cbfimage-pysrc.html
deleted file mode 100644
index 6f507b0..0000000
--- a/doc/html/fabio.cbfimage-pysrc.html
+++ /dev/null
@@ -1,1185 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.cbfimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- <!-- Help link -->
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module cbfimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.cbfimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.cbfimage-module.html">Module fabio.cbfimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"># coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Authors: Jérôme Kieffer, ESRF </tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> email:jerome.kieffer at esrf.fr</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">Cif Binary Files images are 2D images written by the Pilatus detector and others.</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">They use a modified (simplified) byte-offset algorithm. </tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring">CIF is a library for manipulating Crystallographic information files and tries </tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring">to conform to the specification of the IUCR </tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-name">__author__</tt> <tt class="py-op">=</tt> <tt class="py-string">"Jérôme Kieffer"</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-name">__contact__</tt> <tt class="py-op">=</tt> <tt class="py-string">"jerome.kieffer at esrf.eu"</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-name">__license__</tt> <tt class="py-op">=</tt> <tt class="py-string">"GPLv3+"</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-name">__copyright__</tt> <tt class="py-op">=</tt> <tt class="py-string">"European Synchrotron Radiation Facility, Grenoble, France"</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-name">__version__</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"Generated by CIF.py: Jan 2005 - April 2012"</tt><tt class="py-op">,</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> <tt class="py-string">"Written by Jerome Kieffer: Jerome.Kieffer at esrf.eu"</tt><tt class="py-op">,</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-string">"On-line data analysis / ISDD "</tt><tt class="py-op">,</tt> <tt class="py-string">"ESRF Grenoble (France)"</tt><tt class="py-op">]</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">os</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">struct</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"cbfimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name" targets="Module fabio.compression=fabio.compression-module.html"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-3', 'compression', 'link-3');">compression</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Function fabio.compression.decByteOffet_python()=fabio.compression-module.html#d [...]
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-comment">#import time</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt id="link-9" class="py-name" targets="Variable fabio.cbfimage.DATA_TYPES=fabio.cbfimage-module.html#DATA_TYPES,Variable fabio.dm3image.DATA_TYPES=fabio.dm3image-module.html#DATA_TYPES,Variable fabio.edfimage.DATA_TYPES=fabio.edfimage-module.html#DATA_TYPES,Variable fabio.kcdimage.DATA_TYPES=fabio.kcdimage-module.html#DATA_TYPES"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-9', 'DATA_TYPES', 'link-9');">DATA_TYPES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-string">"signed 8-bit integer"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int8</tt><tt class="py-op">,</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-string">"signed 16-bit integer"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">,</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-string">"signed 32-bit integer"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-string">"signed 64-bit integer"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int64</tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt id="link-10" class="py-name" targets="Variable fabio.cbfimage.MINIMUM_KEYS=fabio.cbfimage-module.html#MINIMUM_KEYS,Variable fabio.edfimage.MINIMUM_KEYS=fabio.edfimage-module.html#MINIMUM_KEYS,Variable fabio.kcdimage.MINIMUM_KEYS=fabio.kcdimage-module.html#MINIMUM_KEYS"><a title="fabio.cbfimage.MINIMUM_KEYS
-fabio.edfimage.MINIMUM_KEYS
-fabio.kcdimage.MINIMUM_KEYS" class="py-name" href="#" onclick="return doclink('link-10', 'MINIMUM_KEYS', 'link-10');">MINIMUM_KEYS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"X-Binary-Size-Fastest-Dimension"</tt><tt class="py-op">,</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-string">'ByteOrder'</tt><tt class="py-op">,</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-string">'Data type'</tt><tt class="py-op">,</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-string">'X dimension'</tt><tt class="py-op">,</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-string">'Y dimension'</tt><tt class="py-op">,</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-string">'Number of readouts'</tt><tt class="py-op">]</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"><tt id="link-11" class="py-name" targets="Variable fabio.cbfimage.STARTER=fabio.cbfimage-module.html#STARTER"><a title="fabio.cbfimage.STARTER" class="py-name" href="#" onclick="return doclink('link-11', 'STARTER', 'link-11');">STARTER</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"\x0c\x1a\x04\xd5"</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt id="link-12" class="py-name" targets="Variable fabio.cbfimage.PADDING=fabio.cbfimage-module.html#PADDING"><a title="fabio.cbfimage.PADDING" class="py-name" href="#" onclick="return doclink('link-12', 'PADDING', 'link-12');">PADDING</a></tt> <tt class="py-op">=</tt> <tt class="py-number">512</tt> </tt>
-<a name="cbfimage"></a><div id="cbfimage-def"><a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <a class="py-toggle" href="#" id="cbfimage-toggle" onclick="return toggle('cbfimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.cbfimage.cbfimage-class.html">cbfimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="cbfimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="cbfimage-expanded"><a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-docstring">""" </tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"><tt class="py-docstring"> Read the Cif Binary File data format </tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="cbfimage.__init__"></a><div id="cbfimage.__init__-def"><a name="L50"></a><tt class="py-lineno"> 50</tt> <a class="py-toggle" href="#" id="cbfimage.__init__-toggle" onclick="return toggle('cbfimage.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.cbfimage-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">data</tt><tt class="py-op" [...]
-</div><div id="cbfimage.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="cbfimage.__init__-expanded"><a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"><tt class="py-docstring"> Constructor of the class CIF Binary File reader.</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt class="py-docstring"> @param _strFilename: the name of the file to open</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"><tt class="py-docstring"> @type _strFilename: string</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt id="link-13" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-13', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage.__i [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-14', '__init__', 'link-14');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-15" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-15', 'data', 'link-15');">data</a></tt><tt class="py-op">,</tt> <tt id="link-16" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-16', 'header', 'link-16');">header</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt> <tt class="py-op">=</tt> <tt id="link-17" class="py-name" targets="Class fabio.cbfimage.CIF=fabio.cbfimage.CIF-class.html"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-17', 'CIF', 'link-17');">CIF</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fname</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> <tt class="py-comment">#load the file)</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDimage.read()=fabio.OXDimage.OXDimage-class.html# [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-18', 'read', 'link-18');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="cbfimage.checkData"></a><div id="cbfimage.checkData-def"><a name="L63"></a><tt class="py-lineno"> 63</tt> <a class="py-toggle" href="#" id="cbfimage.checkData-toggle" onclick="return toggle('cbfimage.checkData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.cbfimage-class.html#checkData">checkData</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py [...]
-</div><div id="cbfimage.checkData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="cbfimage.checkData-expanded"><a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-19" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-19', 'data', 'link-15');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-20" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-20', 'data', 'link-15');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> </tt>
-<a name="cbfimage._readheader"></a><div id="cbfimage._readheader-def"><a name="L70"></a><tt class="py-lineno"> 70</tt> <a class="py-toggle" href="#" id="cbfimage._readheader-toggle" onclick="return toggle('cbfimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.cbfimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">inStream [...]
-</div><div id="cbfimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="cbfimage._readheader-expanded"><a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"><tt class="py-docstring"> Read in a header in some CBF format from a string representing binary stuff</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"><tt class="py-docstring"> @param inStream: file containing the Cif Binary part.</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"><tt class="py-docstring"> @type inStream: opened file.</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name" targets="Method fabio.cbfimage.CIF.loadCIF()=fabio.cbfimage.CIF-class.html#loadCIF"><a title="fabio.cbfimage.CIF.loadCIF" class="py-name" href="#" onclick="return doclink('link-21', 'loadCIF', 'link-21');">loadCIF</a></tt><tt class="py-op">(</tt><tt class="py-name">inStream</ [...]
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt class="py-comment"># backport contents of the CIF data to the headers</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-22" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-22', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt><tt class="py-op">:</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-23" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-23', 'key', 'link-22');">key</a></tt> <tt class="py-op">!=</tt> <tt class="py-string">"_array_data.data"</tt><tt class="py-op">:</tt> </tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimage.edfimage-class.html#header_keys"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-24', 'header_keys', 'link-24');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt clas [...]
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-26', 'header', 'link-16');">header</a></tt><tt class="py-op">[</tt><tt id="link-27" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-27', 'key', 'link-22');">key</a></tt [...]
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-string">"_array_data.data"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt><tt class="py-op">:</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"cbfimage: CBF file %s is corrupt, cannot find data block with '_array_data.data' key"</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">inStream2</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt><tt class="py-op">[</tt><tt class="py-string">"_array_data.data"</tt><tt class="py-op">]</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-name">sep</tt> <tt class="py-op">=</tt> <tt class="py-string">"\r\n"</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-name">iSepPos</tt> <tt class="py-op">=</tt> <tt class="py-name">inStream2</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-name">sep</tt><tt class="py-op">)</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">iSepPos</tt> <tt class="py-op"><</tt> <tt class="py-number">0</tt> <tt class="py-keyword">or</tt> <tt class="py-name">iSepPos</tt> <tt class="py-op">></tt> <tt class="py-number">80</tt><tt class="py-op">:</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-name">sep</tt> <tt class="py-op">=</tt> <tt class="py-string">"\n"</tt> <tt class="py-comment">#switch back to unix representation</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt id="link-29" class="py-name" targets="Variable fabio.fabioutils.lines=fabio.fabioutils-module.html#lines"><a title="fabio.fabioutils.lines" class="py-name" href="#" onclick="return doclink('link-29', 'lines', 'link-29');">lines</a></tt> <tt class="py-op">=</tt> <tt class="py-name">inStream2</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-name">sep</tt><tt clas [...]
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">oneLine</tt> <tt class="py-keyword">in</tt> <tt id="link-30" class="py-name"><a title="fabio.fabioutils.lines" class="py-name" href="#" onclick="return doclink('link-30', 'lines', 'link-29');">lines</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-31" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-31', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">oneLine</tt><tt class="py-op">)</tt> <tt class="py-op"><</tt> <t [...]
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt id="link-32" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-32', 'key', 'link-22');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">oneLine</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">':'</tt> <tt class="py-op">,</tt> <tt [...]
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt id="link-33" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-33', 'key', 'link-22');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">oneLine</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">'='</tt> <tt class="py-op">,</tt> <tt [...]
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt id="link-34" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-34', 'key', 'link-22');">key</a></tt> <tt class="py-op">=</tt> <tt id="link-35" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-35', 'key', 'link-22');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-o [...]
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-36', 'header_keys', 'link-24');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-37" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" [...]
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-38', 'header', 'link-16');">header</a></tt><tt class="py-op">[</tt><tt id="link-39" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-39', 'key', 'link-22');">key</a></tt><t [...]
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">missing</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">item</tt> <tt class="py-keyword">in</tt> <tt id="link-40" class="py-name"><a title="fabio.cbfimage.MINIMUM_KEYS
-fabio.edfimage.MINIMUM_KEYS
-fabio.kcdimage.MINIMUM_KEYS" class="py-name" href="#" onclick="return doclink('link-40', 'MINIMUM_KEYS', 'link-10');">MINIMUM_KEYS</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">item</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-41', 'header_keys', 'link-24');">header_keys</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-name">missing</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">item</tt><tt class="py-op">)</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-42" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-42', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">missing</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-43', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"CBF file misses the keys "</tt> <tt class="py-op">+</tt> <tt class="py-string">" "</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">missing</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> </tt>
-<a name="cbfimage.read"></a><div id="cbfimage.read-def"><a name="L113"></a><tt class="py-lineno">113</tt> <a class="py-toggle" href="#" id="cbfimage.read-toggle" onclick="return toggle('cbfimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.cbfimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py- [...]
-</div><div id="cbfimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="cbfimage.read-expanded"><a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-44', 'header', 'link-16');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-45', 'resetvals', 'link-45');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-46', '_open', 'link-46');">_open</a></tt><tt class="py-op">(</tt><tt cla [...]
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._re [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-47', '_readheader', 'link-47');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-comment"># Compute image size</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-48', 'dim1', 'link-48');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">sel [...]
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-50', 'dim2', 'link-50');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">sel [...]
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">"CBF file %s is corrupt, no dimensions in it"</tt> <tt class="py-op">%</tt> <tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt id="link-52" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-52', 'bytecode', 'link-52');">bytecode</a></tt> <tt class="py-op">=</tt> <tt id="link-53" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-53', 'DATA_TYPES', 'link-9');">DATA_TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-54', 'header', 'link-16');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'X-Binary-Element-Type'</tt><tt class="py-op">]</tt><tt class="p [...]
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-55', 'bpp', 'link-55');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-56" class="py-name"><a title="fabio.file_series.file_series.len" cl [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-58', 'tostring', 'link-58');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt id="link-59" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-59', 'bytecode', 'link-52');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-60', 'bpp', 'link-55');">bpp</a></tt> <tt class="py-op">=</tt> <tt class="py-number">32</tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt id="link-61" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-61', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Defaulting type to int32"</tt><tt class="py-op">)</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-62', 'header', 'link-16');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"conversions"</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"x-CBF_BYTE_OFFSET" [...]
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-63" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-63', 'data', 'link-15');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name" targets="Method fabio.cbfimage.cbfimage._readbinary_byte_offset()=fabio.cbfimage.cbfimage-class.html#_readbinary_byte_offset"><a title="fabio.cbfimage.cbfimage._readbinary_byte_offset" class="py-name" href="#" onclick="return doclink('link-64', '_readbinar [...]
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">"Compression scheme not yet supported, please contact FABIO development team"</tt><tt class="py-op">)</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-68', 'bytecode', 'link-52');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-69', 'data', 'link-15');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-70', 'resetvals', 'link-45');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"><tt class="py-comment"># # ensure the PIL image is reset</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> </tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> </tt>
-<a name="cbfimage._readbinary_byte_offset"></a><div id="cbfimage._readbinary_byte_offset-def"><a name="L150"></a><tt class="py-lineno">150</tt> <a class="py-toggle" href="#" id="cbfimage._readbinary_byte_offset-toggle" onclick="return toggle('cbfimage._readbinary_byte_offset');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.cbfimage-class.html#_readbinary_byte_offset">_readbinary_byte_offset</a><tt class="py-op">(</tt><tt class=" [...]
-</div><div id="cbfimage._readbinary_byte_offset-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="cbfimage._readbinary_byte_offset-expanded"><a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"><tt class="py-docstring"> Read in a binary part of an x-CBF_BYTE_OFFSET compressed image </tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"><tt class="py-docstring"> @param inStream: the binary image (without any CIF decorators)</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"><tt class="py-docstring"> @type inStream: python string.</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"><tt class="py-docstring"> @return: a linear numpy array without shape and dtype set</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: numpy array</tt> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-name">startPos</tt> <tt class="py-op">=</tt> <tt class="py-name">inStream</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt id="link-71" class="py-name"><a title="fabio.cbfimage.STARTER" class="py-name" href="#" onclick="return doclink('link-71', 'STARTER', 'link-11');">STARTER</a></tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-number">4</tt> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt id="link-72" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-72', 'data', 'link-15');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">inStream</tt><tt class="py-op">[</tt> <tt class="py-name">startPos</tt><tt class="py-op">:</tt> <tt class="py-name">startPos</tt> <tt class="py-op">+</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="fabio.edfimage.edfi [...]
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt id="link-74" class="py-name" targets="Module fabio.byte_offset=fabio.byte_offset-module.html"><a title="fabio.byte_offset" class="py-name" href="#" onclick="return doclink('link-74', 'byte_offset', 'link-74');">byte_offset</a></tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt id="link-75" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-75', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Error in byte_offset part: Falling back to Numpy implementation"</tt><tt class="py-op">)</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-name">myData</tt> <tt class="py-op">=</tt> <tt id="link-76" class="py-name"><a title="fabio.compression.decByteOffet_numpy" class="py-name" href="#" onclick="return doclink('link-76', 'decByteOffet_numpy', 'link-6');">decByteOffet_numpy</a></tt><tt class="py-op">(</tt><tt id="link-77" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-77', 'data', 'link-15');">data</a></tt><tt class="py-op">,</tt> <tt class="py-name">size</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-78', 'dim1', 'link-48');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-o [...]
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-name">myData</tt> <tt class="py-op">=</tt> <tt id="link-80" class="py-name"><a title="fabio.byte_offset" class="py-name" href="#" onclick="return doclink('link-80', 'byte_offset', 'link-74');">byte_offset</a></tt><tt class="py-op">.</tt><tt class="py-name">analyseCython</tt><tt class="py-op">(</tt><tt id="link-81" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-81', 'data', 'link-15');">data</a></tt><tt class="py-op">,</tt> <tt class="py-name">size</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-82', 'dim1', 'link-48');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-o [...]
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-84" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-84', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">myData</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="fabio. [...]
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">myData</tt> </tt>
-</div><a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> </tt>
-<a name="cbfimage.write"></a><div id="cbfimage.write-def"><a name="L173"></a><tt class="py-lineno">173</tt> <a class="py-toggle" href="#" id="cbfimage.write-toggle" onclick="return toggle('cbfimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.cbfimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">)</tt><tt class [...]
-</div><div id="cbfimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="cbfimage.write-expanded"><a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"><tt class="py-docstring"> write the file in CBF format</tt> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"><tt class="py-docstring"> @param fname: name of the file</tt> </tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"><tt class="py-docstring"> @type: string</tt> </tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-87', 'data', 'link-15');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-88', 'dim2', 'link-50');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="retu [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-90', 'data', 'link-15');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">"CBF image contains no data"</tt><tt class="py-op">)</tt> </tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">=</tt> <tt id="link-91" class="py-name"><a title="fabio.compression.compByteOffet_numpy" class="py-name" href="#" onclick="return doclink('link-91', 'compByteOffet_numpy', 'link-8');">compByteOffet_numpy</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-92', 'data', 'link-15');">data</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"><tt class="py-comment"># l = len(binary_blob)</tt> </tt>
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"><tt class="py-comment"># if (l % PADDING) != 0:</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"><tt class="py-comment"># rem = PADDING - (l % PADDING)</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"><tt class="py-comment"># binary_blob += "\x00" * rem</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-string">"Unknown"</tt> </tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-93" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-93', 'key', 'link-22');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">value</tt> <tt class="py-keyword">in</tt> <tt id="link-94" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-94', 'DATA_TYPES', 'link-9');">DATA_TYPES</a></tt><tt class="py-op">.</tt><tt class="py-name">iteritems</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">value</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-95', 'data', 'link-15');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">:</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt id="link-96" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-96', 'key', 'link-22');">key</a></tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-name">binary_block</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-string">"--CIF-BINARY-FORMAT-SECTION--"</tt><tt class="py-op">,</tt> </tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-string">"Content-Type: application/octet-stream;"</tt><tt class="py-op">,</tt> </tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-string">' conversions="x-CBF_BYTE_OFFSET"'</tt><tt class="py-op">,</tt> </tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-string">'Content-Transfer-Encoding: BINARY'</tt><tt class="py-op">,</tt> </tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-string">"X-Binary-Size: %d"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-97" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-97', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">binary_blob</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-string">"X-Binary-ID: 1"</tt><tt class="py-op">,</tt> </tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-string">'X-Binary-Element-Type: "%s"'</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-string">"X-Binary-Element-Byte-Order: LITTLE_ENDIAN"</tt> <tt class="py-op">,</tt> </tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-string">"Content-MD5: %s"</tt> <tt class="py-op">%</tt> <tt id="link-98" class="py-name"><a title="fabio.compression.md5sum" class="py-name" href="#" onclick="return doclink('link-98', 'md5sum', 'link-7');">md5sum</a></tt><tt class="py-op">(</tt><tt class="py-name">binary_blob</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-string">"X-Binary-Number-of-Elements: %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-99" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-99', 'dim1', 'link-48');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="p [...]
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-string">"X-Binary-Size-Fastest-Dimension: %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-101" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-101', 'dim1', 'link-48');">dim1</a></tt><tt class="py-op">,</tt> </tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-string">"X-Binary-Size-Second-Dimension: %d"</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-102" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-102', 'dim2', 'link-50');">dim2</a></tt><tt class="py-op">,</tt> </tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-string">"X-Binary-Size-Padding: %d"</tt> <tt class="py-op">%</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-string">""</tt><tt class="py-op">,</tt> </tt>
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt id="link-103" class="py-name"><a title="fabio.cbfimage.STARTER" class="py-name" href="#" onclick="return doclink('link-103', 'STARTER', 'link-11');">STARTER</a></tt> <tt class="py-op">+</tt> <tt class="py-name">binary_blob</tt><tt class="py-op">,</tt> </tt>
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-string">""</tt><tt class="py-op">,</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-string">"--CIF-BINARY-FORMAT-SECTION----"</tt> </tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> </tt>
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"_array_data.header_contents"</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-104" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-104', 'header', 'link-16');">header</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-name">nonCifHeaders</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-name">nonCifHeaders</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-105" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-105', 'i', 'link-105');">i</a></tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)< [...]
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> </tt>
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-109" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-109', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-110" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-110', [...]
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt id="link-111" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-111', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-112" class="py-name"><a title="fabio.edfimage.edfimage.header_key [...]
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-113" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-113', 'header_keys', 'link-24');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-114" class="py-name"><a title="fabio.fabioutils.key" class="py-name" h [...]
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-115" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-115', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-116" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-1 [...]
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-117" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-117', 'key', 'link-22');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-string">"_"</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> </tt>
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-118" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-118', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt> <tt class="py-keyword">or</tt> <tt class="py-name">self</tt><tt class [...]
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt><tt class="py-op">[</tt><tt id="link-122" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-122', 'key', 'link-22');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-123" class="py-name"> [...]
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-125" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-125', 'key', 'link-22');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-string">"X-Binary-"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-126" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-126', 'key', 'link-22');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-string">"Content-"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-127" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-127', 'key', 'link-22');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-string">"conversions"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-128" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-128', 'key', 'link-22');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-string">"filename"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-129" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-129', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-1 [...]
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt class="py-name">nonCifHeaders</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"%s %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-131" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-131', 'key', 'link-22');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name"> [...]
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-134" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-134', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">nonCifHeaders</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt><tt class="py-op">[</tt><tt class="py-string">"_array_data.header_contents"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"\r\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-string">"# %s"</tt> <tt class="py-op">%</tt> <tt i [...]
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> </tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt><tt class="py-op">[</tt><tt class="py-string">"_array_data.data"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"\r\n"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">binary_block</tt><tt class="py-op">)</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">cif</tt><tt class="py-op">.</tt><tt id="link-137" class="py-name" targets="Method fabio.cbfimage.CIF.saveCIF()=fabio.cbfimage.CIF-class.html#saveCIF"><a title="fabio.cbfimage.CIF.saveCIF" class="py-name" href="#" onclick="return doclink('link-137', 'saveCIF', 'link-137');">saveCIF</a></tt><tt class="py-op">(</tt><tt class="py-name">fname< [...]
-</div></div><a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> </tt>
-<a name="CIF"></a><div id="CIF-def"><a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"><tt class="py-comment">################################################################################</tt> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"><tt class="py-comment"># CIF class </tt> </tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"><tt class="py-comment">################################################################################</tt> </tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <a class="py-toggle" href="#" id="CIF-toggle" onclick="return toggle('CIF');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html">CIF</a><tt class="py-op">(</tt><tt class="py-base-class">dict</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="CIF-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="CIF-expanded"><a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"><tt class="py-docstring"> This is the CIF class, it represents the CIF dictionary;</tt> </tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"><tt class="py-docstring"> and as a a python dictionary thus inherits from the dict built in class.</tt> </tt>
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt id="link-138" class="py-name" targets="Variable fabio.cbfimage.CIF.EOL=fabio.cbfimage.CIF-class.html#EOL"><a title="fabio.cbfimage.CIF.EOL" class="py-name" href="#" onclick="return doclink('link-138', 'EOL', 'link-138');">EOL</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"\r"</tt><tt class="py-op">,</tt> <tt class="py-string">"\n"</tt><tt class="py-op">,</tt> <tt class="py-str [...]
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt id="link-139" class="py-name" targets="Variable fabio.cbfimage.CIF.BLANK=fabio.cbfimage.CIF-class.html#BLANK"><a title="fabio.cbfimage.CIF.BLANK" class="py-name" href="#" onclick="return doclink('link-139', 'BLANK', 'link-139');">BLANK</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">" "</tt><tt class="py-op">,</tt> <tt class="py-string">"\t"</tt><tt class="py-op">]</tt> <tt clas [...]
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt id="link-141" class="py-name" targets="Variable fabio.cbfimage.CIF.START_COMMENT=fabio.cbfimage.CIF-class.html#START_COMMENT"><a title="fabio.cbfimage.CIF.START_COMMENT" class="py-name" href="#" onclick="return doclink('link-141', 'START_COMMENT', 'link-141');">START_COMMENT</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"\""</tt><tt class="py-op">,</tt> <tt class="py-string">" [...]
-<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt id="link-142" class="py-name" targets="Variable fabio.cbfimage.CIF.BINARY_MARKER=fabio.cbfimage.CIF-class.html#BINARY_MARKER"><a title="fabio.cbfimage.CIF.BINARY_MARKER" class="py-name" href="#" onclick="return doclink('link-142', 'BINARY_MARKER', 'link-142');">BINARY_MARKER</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"--CIF-BINARY-FORMAT-SECTION--"</tt> </tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> </tt>
-<a name="CIF.__init__"></a><div id="CIF.__init__-def"><a name="L253"></a><tt class="py-lineno">253</tt> <a class="py-toggle" href="#" id="CIF.__init__-toggle" onclick="return toggle('CIF.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_strFilename</tt><tt class="py-op">=</tt><tt class [...]
-</div><div id="CIF.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.__init__-expanded"><a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"><tt class="py-docstring"> Constructor of the class.</tt> </tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"><tt class="py-docstring"> @param _strFilename: the name of the file to open</tt> </tt>
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"><tt class="py-docstring"> @type _strFilename: filename (str) or file object</tt> </tt>
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-name">dict</tt><tt class="py-op">.</tt><tt id="link-143" class="py-name"><a title="fabio.OXDimage.Section.__init__
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-143', '__init__', 'link-14');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">)</tt> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ordered</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">_strFilename</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> <tt class="py-comment">#load the file)</tt> </tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-144" class="py-name"><a title="fabio.cbfimage.CIF.loadCIF" class="py-name" href="#" onclick="return doclink('link-144', 'loadCIF', 'link-21');">loadCIF</a></tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> </tt>
-<a name="CIF.__setitem__"></a><div id="CIF.__setitem__-def"><a name="L265"></a><tt class="py-lineno">265</tt> <a class="py-toggle" href="#" id="CIF.__setitem__-toggle" onclick="return toggle('CIF.__setitem__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#__setitem__">__setitem__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">key</tt><tt class="py-op">,</tt> [...]
-</div><div id="CIF.__setitem__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.__setitem__-expanded"><a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-145" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-145', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</ [...]
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ordered</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-146" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-146', 'key', 'link-22');">key</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">dict</tt><tt class="py-op">.</tt><tt id="link-147" class="py-name" targets="Method fabio.cbfimage.CIF.__setitem__()=fabio.cbfimage.CIF-class.html#__setitem__"><a title="fabio.cbfimage.CIF.__setitem__" class="py-name" href="#" onclick="return doclink('link-147', '__setitem__', 'link-147');">__setitem__</a></tt><tt class="py-op">(</tt><tt class="py-name">sel [...]
-</div><a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> </tt>
-<a name="CIF.pop"></a><div id="CIF.pop-def"><a name="L270"></a><tt class="py-lineno">270</tt> <a class="py-toggle" href="#" id="CIF.pop-toggle" onclick="return toggle('CIF.pop');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#pop">pop</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">key</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="CIF.pop-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.pop-expanded"><a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-149" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-149', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name"> [...]
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ordered</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt id="link-150" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-150', 'key', 'link-22');">key</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">dict</tt><tt class="py-op">.</tt><tt id="link-151" class="py-name" targets="Method fabio.cbfimage.CIF.pop()=fabio.cbfimage.CIF-class.html#pop"><a title="fabio.cbfimage.CIF.pop" class="py-name" href="#" onclick="return doclink('link-151', 'pop', 'link-151');">pop</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="l [...]
-</div><a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> </tt>
-<a name="CIF.popitem"></a><div id="CIF.popitem-def"><a name="L275"></a><tt class="py-lineno">275</tt> <a class="py-toggle" href="#" id="CIF.popitem-toggle" onclick="return toggle('CIF.popitem');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#popitem">popitem</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">key</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="CIF.popitem-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.popitem-expanded"><a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-153" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-153', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="p [...]
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ordered</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt id="link-154" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-154', 'key', 'link-22');">key</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">dict</tt><tt class="py-op">.</tt><tt id="link-155" class="py-name" targets="Method fabio.cbfimage.CIF.popitem()=fabio.cbfimage.CIF-class.html#popitem"><a title="fabio.cbfimage.CIF.popitem" class="py-name" href="#" onclick="return doclink('link-155', 'popitem', 'link-155');">popitem</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py- [...]
-</div><a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> </tt>
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> </tt>
-<a name="CIF.loadCIF"></a><div id="CIF.loadCIF-def"><a name="L281"></a><tt class="py-lineno">281</tt> <a class="py-toggle" href="#" id="CIF.loadCIF-toggle" onclick="return toggle('CIF.loadCIF');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#loadCIF">loadCIF</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_strFilename</tt><tt class="py-op">,</tt> <tt class="py- [...]
-</div><div id="CIF.loadCIF-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.loadCIF-expanded"><a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-docstring">"""Load the CIF file and populates the CIF dictionary into the object</tt> </tt>
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"><tt class="py-docstring"> @param _strFilename: the name of the file to open</tt> </tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"><tt class="py-docstring"> @type _strFilename: string</tt> </tt>
-<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"><tt class="py-docstring"> @param _strFilename: the name of the file to open</tt> </tt>
-<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"><tt class="py-docstring"> @type _strFilename: string</tt> </tt>
-<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"><tt class="py-docstring"> @return: None</tt> </tt>
-<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> </tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt id="link-157" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-157', 'str', 'link-157');">str</a></tt><tt class="py-op">,</tt> <tt class="py-name">unicode</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">isfile</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">,</tt> <tt class="py-string">"rb"</tt><tt class="py-op">)</tt> </tt>
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">"CIF.loadCIF: No such file to open: %s"</tt> <tt class="py-op">%</tt> <tt class="py-name">_strFilename</tt><tt class="py-op">)</tt> </tt>
-<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt class="py-comment">#elif isinstance(_strFilename, file, bz2.BZ2File, ):</tt> </tt>
-<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-string">"read"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">dir</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">_strFilename</tt> </tt>
-<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">"CIF.loadCIF: what is %s type %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">,</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt [...]
-<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">_bKeepComment</tt><tt class="py-op">:</tt> </tt>
-<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-158" class="py-name" targets="Method fabio.cbfimage.CIF._parseCIF()=fabio.cbfimage.CIF-class.html#_parseCIF"><a title="fabio.cbfimage.CIF._parseCIF" class="py-name" href="#" onclick="return doclink('link-158', '_parseCIF', 'link-158');">_parseCIF</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="l [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-159', 'read', 'link-18');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-160" class="py-name"><a title="fabio.cbfimage.CIF._parseCIF" class="py-name" href="#" onclick="return doclink('link-160', '_parseCIF', 'link-158');">_parseCIF</a></tt><tt class="py-op">(</tt><tt id="link-161" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-161', 'CIF', 'link-17');">CIF</a> [...]
-</div><a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> <tt class="py-name">readCIF</tt> <tt class="py-op">=</tt> <tt id="link-163" class="py-name"><a title="fabio.cbfimage.CIF.loadCIF" class="py-name" href="#" onclick="return doclink('link-163', 'loadCIF', 'link-21');">loadCIF</a></tt> </tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> </tt>
-<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="CIF.isAscii"></a><div id="CIF.isAscii-def"><a name="L307"></a><tt class="py-lineno">307</tt> <a class="py-toggle" href="#" id="CIF.isAscii-toggle" onclick="return toggle('CIF.isAscii');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#isAscii">isAscii</a><tt class="py-op">(</tt><tt class="py-param">_strIn</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="CIF.isAscii-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.isAscii-expanded"><a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"><tt class="py-docstring"> Check if all characters in a string are ascii,</tt> </tt>
-<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"><tt class="py-docstring"> @param _strIn: input string</tt> </tt>
-<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"><tt class="py-docstring"> @type _strIn: python string</tt> </tt>
-<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"><tt class="py-docstring"> @return: boolean</tt> </tt>
-<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: boolean</tt> </tt>
-<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-name">bIsAcii</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-164" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-164', 'i', 'link-105');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">_strIn</tt><tt class="py-op">:</tt> </tt>
-<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">ord</tt><tt class="py-op">(</tt><tt id="link-165" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-165', 'i', 'link-105');">i</a></tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">127</tt><tt class="py-op">:</tt> </tt>
-<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-name">bIsAcii</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">bIsAcii</tt> </tt>
-</div><a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> </tt>
-<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> </tt>
-<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="CIF._readCIF"></a><div id="CIF._readCIF-def"><a name="L325"></a><tt class="py-lineno">325</tt> <a class="py-toggle" href="#" id="CIF._readCIF-toggle" onclick="return toggle('CIF._readCIF');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#_readCIF">_readCIF</a><tt class="py-op">(</tt><tt class="py-param">_instream</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="CIF._readCIF-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF._readCIF-expanded"><a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"><tt class="py-docstring"> - Check if the filename containing the CIF data exists</tt> </tt>
-<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"><tt class="py-docstring"> - read the cif file</tt> </tt>
-<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"><tt class="py-docstring"> - removes the comments</tt> </tt>
-<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"><tt class="py-docstring"> @param _instream: the file containing the CIF data</tt> </tt>
-<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"><tt class="py-docstring"> @type _instream: open file in read mode</tt> </tt>
-<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"><tt class="py-docstring"> @return: a string containing the raw data</tt> </tt>
-<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: string</tt> </tt>
-<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-string">"readlines"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">dir</tt><tt class="py-op">(</tt><tt class="py-name">_instream</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">"CIF._readCIF(instream): I expected instream to be an opened file,\</tt> </tt>
-<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"><tt class="py-string"> here I got %s type %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">_instream</tt><tt class="py-op">,</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">_instream</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> <tt class="py-name">lLinesRead</tt> <tt class="py-op">=</tt> <tt class="py-name">_instream</tt><tt class="py-op">.</tt><tt class="py-name">readlines</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">sLine</tt> <tt class="py-keyword">in</tt> <tt class="py-name">lLinesRead</tt><tt class="py-op">:</tt> </tt>
-<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> <tt class="py-name">iPos</tt> <tt class="py-op">=</tt> <tt class="py-name">sLine</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"#"</tt><tt class="py-op">)</tt> </tt>
-<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">iPos</tt> <tt class="py-op">>=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-166" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-166', 'CIF', 'link-17');">CIF</a></tt><tt class="py-op">.</tt><tt id="link-167" class="py-name" targets="Static Method fabio.cbfimage.CIF.isAscii()=fabio.cbfimage.CIF-class.html#isAscii,Function fabio.fabioutils.isAscii()=fabio.fabioutils-module.html#isAs [...]
-fabio.fabioutils.isAscii" class="py-name" href="#" onclick="return doclink('link-167', 'isAscii', 'link-167');">isAscii</a></tt><tt class="py-op">(</tt><tt class="py-name">sLine</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">+=</tt> <tt class="py-name">sLine</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">iPos</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">linesep</tt> </tt>
-<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> </tt>
-<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">iPos</tt> <tt class="py-op">></tt> <tt class="py-number">80</tt> <tt class="py-op">:</tt> </tt>
-<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"> <tt id="link-168" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-168', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"This line is too long and could cause problems in PreQuest: %s"</tt><tt class="py-op">,</tt> <tt class="py-name">sLine</tt><tt class="py-op">)</tt> </tt>
-<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"> <tt class="py-keyword">else</tt> <tt class="py-op">:</tt> </tt>
-<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">+=</tt> <tt class="py-name">sLine</tt> </tt>
-<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-169" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-169', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sLine</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">> [...]
-<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> <tt id="link-170" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-170', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"This line is too long and could cause problems in PreQues: %s"</tt><tt class="py-op">,</tt> <tt class="py-name">sLine</tt><tt class="py-op">)</tt> </tt>
-<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">sText</tt> </tt>
-</div><a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"> </tt>
-<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> </tt>
-<a name="CIF._parseCIF"></a><div id="CIF._parseCIF-def"><a name="L356"></a><tt class="py-lineno">356</tt> <a class="py-toggle" href="#" id="CIF._parseCIF-toggle" onclick="return toggle('CIF._parseCIF');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#_parseCIF">_parseCIF</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">sText</tt><tt class="py-op">)</tt><tt class= [...]
-</div><div id="CIF._parseCIF-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF._parseCIF-expanded"><a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"><tt class="py-docstring"> - Parses the text of a CIF file</tt> </tt>
-<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"><tt class="py-docstring"> - Cut it in fields</tt> </tt>
-<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"><tt class="py-docstring"> - Find all the loops and process</tt> </tt>
-<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"><tt class="py-docstring"> - Find all the keys and values</tt> </tt>
-<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"><tt class="py-docstring"> @param sText: the content of the CIF - file</tt> </tt>
-<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"><tt class="py-docstring"> @type sText: string</tt> </tt>
-<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"><tt class="py-docstring"> @return: Nothing, the data are incorporated at the CIF object dictionary</tt> </tt>
-<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: None</tt> </tt>
-<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"> <tt class="py-name">loopidx</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"> <tt class="py-name">looplen</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> <tt class="py-name">loop</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"> <tt class="py-comment">#first of all : separate the cif file in fields</tt> </tt>
-<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt class="py-name">lFields</tt> <tt class="py-op">=</tt> <tt id="link-171" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-171', 'CIF', 'link-17');">CIF</a></tt><tt class="py-op">.</tt><tt id="link-172" class="py-name" targets="Static Method fabio.cbfimage.CIF._splitCIF()=fabio.cbfimage.CIF-class.html#_splitCIF"><a title="fabio.cbfimage.CIF._splitCIF" class [...]
-<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> <tt class="py-comment">#Then : look for loops</tt> </tt>
-<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-173" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-173', 'i', 'link-105');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt id="link-174" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-174', ' [...]
-<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-175" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-175', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">lower</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-s [...]
-<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt class="py-name">loopidx</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-176" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-176', 'i', 'link-105');">i</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-177" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-177', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">loopidx</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-178" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-178', 'i', 'link-105');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">loopidx</tt><tt class="py-op">:</tt> </tt>
-<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"> <tt class="py-name">loopone</tt><tt class="py-op">,</tt> <tt class="py-name">length</tt><tt class="py-op">,</tt> <tt class="py-name">keys</tt> <tt class="py-op">=</tt> <tt id="link-179" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-179', 'CIF', 'link-17');">CIF</a></tt><tt class="py-op">.</tt><tt id="link-180" class="py-name" targets="Static Method [...]
-<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt class="py-name">loop</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-name">keys</tt><tt class="py-op">,</tt> <tt class="py-name">loopone</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> <tt class="py-name">looplen</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">length</tt><tt class="py-op">)</tt> </tt>
-<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> </tt>
-<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"> </tt>
-<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-182" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-182', 'i', 'link-105');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt id="link-183" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-183 [...]
-<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt class="py-name">f1</tt> <tt class="py-op">=</tt> <tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">loopidx</tt><tt class="py-op">[</tt><tt id="link-184" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-184', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">]</tt> <tt class="py [...]
-<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-name">lFields</tt> <tt class="py-op">=</tt> <tt class="py-name">f1</tt> </tt>
-<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> </tt>
-<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-string">"loop_"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">loop</tt> </tt>
-<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> </tt>
-<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-187" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-187', 'i', 'link-105');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt id="link-188" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-188', ' [...]
-<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"> <tt class="py-comment"># print lFields[i], lFields[i+1]</tt> </tt>
-<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-189" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-189', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-190" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-190', ' [...]
-<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-192" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-192', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"_"</tt> <tt class= [...]
-<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-194" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-194', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link [...]
-</div><a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> </tt>
-<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="CIF._splitCIF"></a><div id="CIF._splitCIF-def"><a name="L397"></a><tt class="py-lineno">397</tt> <a class="py-toggle" href="#" id="CIF._splitCIF-toggle" onclick="return toggle('CIF._splitCIF');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#_splitCIF">_splitCIF</a><tt class="py-op">(</tt><tt class="py-param">sText</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="CIF._splitCIF-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF._splitCIF-expanded"><a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"><tt class="py-docstring"> Separate the text in fields as defined in the CIF</tt> </tt>
-<a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"><tt class="py-docstring"> @param sText: the content of the CIF - file</tt> </tt>
-<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"><tt class="py-docstring"> @type sText: string</tt> </tt>
-<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"><tt class="py-docstring"> @return: list of all the fields of the CIF</tt> </tt>
-<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: list</tt> </tt>
-<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"> <tt class="py-name">lFields</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">True</tt><tt class="py-op">:</tt> </tt>
-<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-196" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-196', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sText</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"'"</tt><tt class="py-op">:</tt> </tt>
-<a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-keyword">not</tt> <tt class="py-name">bFinished</tt><tt class="py-op">:</tt> </tt>
-<a name="L414"></a><tt class="py-lineno">414</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> <tt class="py-op">+</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"'"</tt>< [...]
-<a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"> <tt class="py-comment">##########debuging in case we arrive at the end of the text </tt> </tt>
-<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">idx</tt> <tt class="py-op">>=</tt> <tt id="link-197" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-197', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sText</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt clas [...]
-<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"> <tt class="py-comment"># print sText,idx,len(sText)</tt> </tt>
-<a name="L418"></a><tt class="py-lineno">418</tt> <tt class="py-line"> <tt class="py-name">lFields</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><t [...]
-<a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> </tt>
-<a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt id="link-198" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-198', 'CIF', 'link-17');">CIF</a></tt><tt class="py-op">.</ [...]
-<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"> <tt class="py-name">lFields</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"> <tt class="py-name">sText1</tt> <tt class="py-op">=</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L426"></a><tt class="py-lineno">426</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">=</tt> <tt class="py-name">sText1</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"> </tt>
-<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'"'</tt><tt class="py-op">:</tt> </tt>
-<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-keyword">not</tt> <tt class="py-name">bFinished</tt><tt class="py-op">:</tt> </tt>
-<a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> <tt class="py-op">+</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'"'</tt>< [...]
-<a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"> <tt class="py-comment">##########debuging in case we arrive at the end of the text </tt> </tt>
-<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">idx</tt> <tt class="py-op">>=</tt> <tt id="link-200" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-200', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sText</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt clas [...]
-<a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> <tt class="py-comment"># print sText,idx,len(sText)</tt> </tt>
-<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> <tt class="py-name">lFields</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><t [...]
-<a name="L438"></a><tt class="py-lineno">438</tt> <tt class="py-line"><tt class="py-comment"># print lFields[-1]</tt> </tt>
-<a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"> </tt>
-<a name="L443"></a><tt class="py-lineno">443</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt id="link-201" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-201', 'CIF', 'link-17');">CIF</a></tt><tt class="py-op">.</ [...]
-<a name="L444"></a><tt class="py-lineno">444</tt> <tt class="py-line"> <tt class="py-name">lFields</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L445"></a><tt class="py-lineno">445</tt> <tt class="py-line"><tt class="py-comment"># print lFields[-1]</tt> </tt>
-<a name="L446"></a><tt class="py-lineno">446</tt> <tt class="py-line"> <tt class="py-name">sText1</tt> <tt class="py-op">=</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L447"></a><tt class="py-lineno">447</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">=</tt> <tt class="py-name">sText1</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L448"></a><tt class="py-lineno">448</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L449"></a><tt class="py-lineno">449</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">';'</tt><tt class="py-op">:</tt> </tt>
-<a name="L450"></a><tt class="py-lineno">450</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt id="link-203" class="py-name"><a title="fabio.cbfimage.CIF" c [...]
-<a name="L451"></a><tt class="py-lineno">451</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">32</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt id="link-205" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-205', 'CIF', 'link-1 [...]
-<a name="L452"></a><tt class="py-lineno">452</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">idx</tt> <tt class="py-op">==</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L453"></a><tt class="py-lineno">453</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L454"></a><tt class="py-lineno">454</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L455"></a><tt class="py-lineno">455</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">+=</tt> <tt class="py-number">32</tt> <tt class="py-op">+</tt> <tt id="link-207" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-207', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt id="link-208" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" on [...]
-<a name="L456"></a><tt class="py-lineno">456</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L457"></a><tt class="py-lineno">457</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L458"></a><tt class="py-lineno">458</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L459"></a><tt class="py-lineno">459</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-keyword">not</tt> <tt class="py-name">bFinished</tt><tt class="py-op">:</tt> </tt>
-<a name="L460"></a><tt class="py-lineno">460</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> <tt class="py-op">+</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">';'</tt>< [...]
-<a name="L461"></a><tt class="py-lineno">461</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt id="link-210" class="py-name"><a title="fabio.cbfimage.CIF" class="py-name" href="#" onclick="return doclink('link-210', 'CIF', 'link-17');">CIF</a></tt><tt class="py-op">.</ [...]
-<a name="L462"></a><tt class="py-lineno">462</tt> <tt class="py-line"> <tt class="py-name">lFields</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-name">idx</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(< [...]
-<a name="L463"></a><tt class="py-lineno">463</tt> <tt class="py-line"> <tt class="py-name">sText1</tt> <tt class="py-op">=</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L464"></a><tt class="py-lineno">464</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">=</tt> <tt class="py-name">sText1</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L465"></a><tt class="py-lineno">465</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L466"></a><tt class="py-lineno">466</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L467"></a><tt class="py-lineno">467</tt> <tt class="py-line"> <tt class="py-name">f</tt> <tt class="py-op">=</tt> <tt class="py-name">sText</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L468"></a><tt class="py-lineno">468</tt> <tt class="py-line"> <tt class="py-name">lFields</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">)</tt> </tt>
-<a name="L469"></a><tt class="py-lineno">469</tt> <tt class="py-line"><tt class="py-comment"># print lFields[-1]</tt> </tt>
-<a name="L470"></a><tt class="py-lineno">470</tt> <tt class="py-line"> <tt class="py-name">sText1</tt> <tt class="py-op">=</tt> <tt class="py-name">sText</tt><tt class="py-op">[</tt><tt id="link-212" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-212', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">)</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> [...]
-<a name="L471"></a><tt class="py-lineno">471</tt> <tt class="py-line"> <tt class="py-name">sText</tt> <tt class="py-op">=</tt> <tt class="py-name">sText1</tt> </tt>
-<a name="L472"></a><tt class="py-lineno">472</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">lFields</tt> </tt>
-</div><a name="L473"></a><tt class="py-lineno">473</tt> <tt class="py-line"> </tt>
-<a name="L474"></a><tt class="py-lineno">474</tt> <tt class="py-line"> </tt>
-<a name="L475"></a><tt class="py-lineno">475</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="CIF._analyseOneLoop"></a><div id="CIF._analyseOneLoop-def"><a name="L476"></a><tt class="py-lineno">476</tt> <a class="py-toggle" href="#" id="CIF._analyseOneLoop-toggle" onclick="return toggle('CIF._analyseOneLoop');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#_analyseOneLoop">_analyseOneLoop</a><tt class="py-op">(</tt><tt class="py-param">lFields</tt><tt class="py-op">,</tt> <tt class="py-param">iStar [...]
-</div><div id="CIF._analyseOneLoop-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF._analyseOneLoop-expanded"><a name="L477"></a><tt class="py-lineno">477</tt> <tt class="py-line"> <tt class="py-docstring">"""Processes one loop in the data extraction of the CIF file</tt> </tt>
-<a name="L478"></a><tt class="py-lineno">478</tt> <tt class="py-line"><tt class="py-docstring"> @param lFields: list of all the words contained in the cif file</tt> </tt>
-<a name="L479"></a><tt class="py-lineno">479</tt> <tt class="py-line"><tt class="py-docstring"> @type lFields: list</tt> </tt>
-<a name="L480"></a><tt class="py-lineno">480</tt> <tt class="py-line"><tt class="py-docstring"> @param iStart: the starting index corresponding to the "loop_" key</tt> </tt>
-<a name="L481"></a><tt class="py-lineno">481</tt> <tt class="py-line"><tt class="py-docstring"> @type iStart: integer</tt> </tt>
-<a name="L482"></a><tt class="py-lineno">482</tt> <tt class="py-line"><tt class="py-docstring"> @return: the list of loop dictionaries, the length of the data</tt> </tt>
-<a name="L483"></a><tt class="py-lineno">483</tt> <tt class="py-line"><tt class="py-docstring"> extracted from the lFields and the list of all the keys of the loop.</tt> </tt>
-<a name="L484"></a><tt class="py-lineno">484</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: tuple</tt> </tt>
-<a name="L485"></a><tt class="py-lineno">485</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L486"></a><tt class="py-lineno">486</tt> <tt class="py-line"> <tt class="py-comment"># in earch loop we first search the length of the loop</tt> </tt>
-<a name="L487"></a><tt class="py-lineno">487</tt> <tt class="py-line"> <tt class="py-comment"># print lFields</tt> </tt>
-<a name="L488"></a><tt class="py-lineno">488</tt> <tt class="py-line"><tt class="py-comment"># curloop = {}</tt> </tt>
-<a name="L489"></a><tt class="py-lineno">489</tt> <tt class="py-line"> <tt class="py-name">loop</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L490"></a><tt class="py-lineno">490</tt> <tt class="py-line"> <tt class="py-name">keys</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L491"></a><tt class="py-lineno">491</tt> <tt class="py-line"> <tt id="link-213" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-213', 'i', 'link-105');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-name">iStart</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
-<a name="L492"></a><tt class="py-lineno">492</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L493"></a><tt class="py-lineno">493</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-keyword">not</tt> <tt class="py-name">bFinished</tt><tt class="py-op">:</tt> </tt>
-<a name="L494"></a><tt class="py-lineno">494</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-214" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-214', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"_"</tt><tt class=" [...]
-<a name="L495"></a><tt class="py-lineno">495</tt> <tt class="py-line"> <tt class="py-name">keys</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-215" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-215', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-comment">#.lower())</tt> </tt>
-<a name="L496"></a><tt class="py-lineno">496</tt> <tt class="py-line"> <tt id="link-216" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-216', 'i', 'link-105');">i</a></tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L497"></a><tt class="py-lineno">497</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L498"></a><tt class="py-lineno">498</tt> <tt class="py-line"> <tt class="py-name">bFinished</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L499"></a><tt class="py-lineno">499</tt> <tt class="py-line"> <tt id="link-217" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-217', 'data', 'link-15');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L500"></a><tt class="py-lineno">500</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">True</tt><tt class="py-op">:</tt> </tt>
-<a name="L501"></a><tt class="py-lineno">501</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-218" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-218', 'i', 'link-105');">i</a></tt> <tt class="py-op">>=</tt> <tt id="link-219" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-219', 'len', 'link-31');">len</a></tt><tt class="py-op">(</t [...]
-<a name="L502"></a><tt class="py-lineno">502</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L503"></a><tt class="py-lineno">503</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-220" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-220', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-221" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-221', [...]
-<a name="L504"></a><tt class="py-lineno">504</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L505"></a><tt class="py-lineno">505</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-222" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-222', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"_"</tt><tt class [...]
-<a name="L506"></a><tt class="py-lineno">506</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L507"></a><tt class="py-lineno">507</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-223" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-223', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">"loop_"</tt><tt class="py-op">,</tt> <tt class="py-string">"stop [...]
-<a name="L508"></a><tt class="py-lineno">508</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L509"></a><tt class="py-lineno">509</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L510"></a><tt class="py-lineno">510</tt> <tt class="py-line"> <tt id="link-224" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-224', 'data', 'link-15');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">lFields</tt><tt class="py-op">[</tt><tt id="link-225" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-225', 'i', 'link-105');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L511"></a><tt class="py-lineno">511</tt> <tt class="py-line"> <tt id="link-226" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-226', 'i', 'link-105');">i</a></tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L512"></a><tt class="py-lineno">512</tt> <tt class="py-line"> <tt class="py-comment">#print len(keys), len(data)</tt> </tt>
-<a name="L513"></a><tt class="py-lineno">513</tt> <tt class="py-line"> <tt class="py-name">k</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L514"></a><tt class="py-lineno">514</tt> <tt class="py-line"> </tt>
-<a name="L515"></a><tt class="py-lineno">515</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-227" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-227', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt id="link-228" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-228', 'data', 'link-15');">data</a></tt><tt class="py-op">)</tt> <tt class="py-op"><</tt> <tt id="link-229" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-229', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">keys</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L516"></a><tt class="py-lineno">516</tt> <tt class="py-line"> <tt class="py-name">element</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L517"></a><tt class="py-lineno">517</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">j</tt> <tt class="py-keyword">in</tt> <tt class="py-name">keys</tt><tt class="py-op">:</tt> </tt>
-<a name="L518"></a><tt class="py-lineno">518</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">k</tt> <tt class="py-op"><</tt> <tt id="link-230" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-230', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt id="link-231" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-231', 'data', 'link-15');">data</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L519"></a><tt class="py-lineno">519</tt> <tt class="py-line"> <tt class="py-name">element</tt><tt class="py-op">[</tt><tt class="py-name">j</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-232" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-232', 'data', 'link-15');">data</a></tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt class="py-op">]</tt> </tt>
-<a name="L520"></a><tt class="py-lineno">520</tt> <tt class="py-line"> <tt class="py-keyword">else</tt> <tt class="py-op">:</tt> </tt>
-<a name="L521"></a><tt class="py-lineno">521</tt> <tt class="py-line"> <tt class="py-name">element</tt><tt class="py-op">[</tt><tt class="py-name">j</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"?"</tt> </tt>
-<a name="L522"></a><tt class="py-lineno">522</tt> <tt class="py-line"> <tt class="py-name">k</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L523"></a><tt class="py-lineno">523</tt> <tt class="py-line"> <tt class="py-comment">#print element</tt> </tt>
-<a name="L524"></a><tt class="py-lineno">524</tt> <tt class="py-line"> <tt class="py-name">loop</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">element</tt><tt class="py-op">)</tt> </tt>
-<a name="L525"></a><tt class="py-lineno">525</tt> <tt class="py-line"> </tt>
-<a name="L526"></a><tt class="py-lineno">526</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L527"></a><tt class="py-lineno">527</tt> <tt class="py-line"> <tt class="py-comment">#print data</tt> </tt>
-<a name="L528"></a><tt class="py-lineno">528</tt> <tt class="py-line"> <tt class="py-comment">#print keys </tt> </tt>
-<a name="L529"></a><tt class="py-lineno">529</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-233" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-233', 'i', 'link-105');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt id="link-234" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-234 [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-235', 'data', 'link-15');">data</a></tt><tt class="py-op">)</tt> <tt class="py-op">/</tt> <tt id="link-236" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-236', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">keys</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L530"></a><tt class="py-lineno">530</tt> <tt class="py-line"> <tt class="py-name">element</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L531"></a><tt class="py-lineno">531</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">j</tt> <tt class="py-keyword">in</tt> <tt class="py-name">keys</tt><tt class="py-op">:</tt> </tt>
-<a name="L532"></a><tt class="py-lineno">532</tt> <tt class="py-line"> <tt class="py-name">element</tt><tt class="py-op">[</tt><tt class="py-name">j</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-237" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-237', 'data', 'link-15');">data</a></tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt class="py-op">]</tt> </tt>
-<a name="L533"></a><tt class="py-lineno">533</tt> <tt class="py-line"> <tt class="py-name">k</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L534"></a><tt class="py-lineno">534</tt> <tt class="py-line"> <tt class="py-comment"># print element</tt> </tt>
-<a name="L535"></a><tt class="py-lineno">535</tt> <tt class="py-line"> <tt class="py-name">loop</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">element</tt><tt class="py-op">)</tt> </tt>
-<a name="L536"></a><tt class="py-lineno">536</tt> <tt class="py-line"> <tt class="py-comment"># print loop</tt> </tt>
-<a name="L537"></a><tt class="py-lineno">537</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">loop</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt> <tt class="py-op">+</tt> <tt id="link-238" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-238', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">keys</tt><tt class="py-op">)</tt> <tt class="py-op">+< [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-240', 'data', 'link-15');">data</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">keys</tt> </tt>
-</div><a name="L538"></a><tt class="py-lineno">538</tt> <tt class="py-line"> </tt>
-<a name="L539"></a><tt class="py-lineno">539</tt> <tt class="py-line"> </tt>
-<a name="L540"></a><tt class="py-lineno">540</tt> <tt class="py-line"> </tt>
-<a name="L541"></a><tt class="py-lineno">541</tt> <tt class="py-line"> </tt>
-<a name="L542"></a><tt class="py-lineno">542</tt> <tt class="py-line"> </tt>
-<a name="L543"></a><tt class="py-lineno">543</tt> <tt class="py-line"> </tt>
-<a name="L544"></a><tt class="py-lineno">544</tt> <tt class="py-line"><tt class="py-comment">#############################################################################################</tt> </tt>
-<a name="L545"></a><tt class="py-lineno">545</tt> <tt class="py-line"><tt class="py-comment">######## everything needed to write a cif file #########################################</tt> </tt>
-<a name="L546"></a><tt class="py-lineno">546</tt> <tt class="py-line"><tt class="py-comment">#############################################################################################</tt> </tt>
-<a name="L547"></a><tt class="py-lineno">547</tt> <tt class="py-line"> </tt>
-<a name="CIF.saveCIF"></a><div id="CIF.saveCIF-def"><a name="L548"></a><tt class="py-lineno">548</tt> <a class="py-toggle" href="#" id="CIF.saveCIF-toggle" onclick="return toggle('CIF.saveCIF');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#saveCIF">saveCIF</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_strFilename</tt><tt class="py-op">=</tt><tt class="py-s [...]
-</div><div id="CIF.saveCIF-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.saveCIF-expanded"><a name="L549"></a><tt class="py-lineno">549</tt> <tt class="py-line"> <tt class="py-docstring">"""Transforms the CIF object in string then write it into the given file</tt> </tt>
-<a name="L550"></a><tt class="py-lineno">550</tt> <tt class="py-line"><tt class="py-docstring"> @param _strFilename: the of the file to be written</tt> </tt>
-<a name="L551"></a><tt class="py-lineno">551</tt> <tt class="py-line"><tt class="py-docstring"> @param linesep: line separation used (to force compatibility with windows/unix)</tt> </tt>
-<a name="L552"></a><tt class="py-lineno">552</tt> <tt class="py-line"><tt class="py-docstring"> @param binary: Shall we write the data as binary (True only for imageCIF/CBF)</tt> </tt>
-<a name="L553"></a><tt class="py-lineno">553</tt> <tt class="py-line"><tt class="py-docstring"> @type param: string</tt> </tt>
-<a name="L554"></a><tt class="py-lineno">554</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L555"></a><tt class="py-lineno">555</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">binary</tt><tt class="py-op">:</tt> </tt>
-<a name="L556"></a><tt class="py-lineno">556</tt> <tt class="py-line"> <tt class="py-name">mode</tt> <tt class="py-op">=</tt> <tt class="py-string">"wb"</tt> </tt>
-<a name="L557"></a><tt class="py-lineno">557</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L558"></a><tt class="py-lineno">558</tt> <tt class="py-line"> <tt class="py-name">mode</tt> <tt class="py-op">=</tt> <tt class="py-string">"w"</tt> </tt>
-<a name="L559"></a><tt class="py-lineno">559</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L560"></a><tt class="py-lineno">560</tt> <tt class="py-line"> <tt class="py-name">fFile</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L561"></a><tt class="py-lineno">561</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IOError</tt><tt class="py-op">:</tt> </tt>
-<a name="L562"></a><tt class="py-lineno">562</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Error during the opening of file for write: %s"</tt> <tt class="py-op">%</tt> </tt>
-<a name="L563"></a><tt class="py-lineno">563</tt> <tt class="py-line"> <tt class="py-name">_strFilename</tt><tt class="py-op">)</tt> </tt>
-<a name="L564"></a><tt class="py-lineno">564</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
-<a name="L565"></a><tt class="py-lineno">565</tt> <tt class="py-line"> <tt class="py-name">fFile</tt><tt class="py-op">.</tt><tt id="link-241" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryimage-c [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-241', 'write', 'link-241');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-242" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-242', 'tostring', 'link-58');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">,</tt> <tt class="py-name">linesep</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L566"></a><tt class="py-lineno">566</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L567"></a><tt class="py-lineno">567</tt> <tt class="py-line"> <tt class="py-name">fFile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L568"></a><tt class="py-lineno">568</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IOError</tt><tt class="py-op">:</tt> </tt>
-<a name="L569"></a><tt class="py-lineno">569</tt> <tt class="py-line"> <tt class="py-keyword">print</tt><tt class="py-op">(</tt><tt class="py-string">"Error during the closing of file for write: %s"</tt> <tt class="py-op">%</tt> </tt>
-<a name="L570"></a><tt class="py-lineno">570</tt> <tt class="py-line"> <tt class="py-name">_strFilename</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L571"></a><tt class="py-lineno">571</tt> <tt class="py-line"> </tt>
-<a name="L572"></a><tt class="py-lineno">572</tt> <tt class="py-line"> </tt>
-<a name="CIF.tostring"></a><div id="CIF.tostring-def"><a name="L573"></a><tt class="py-lineno">573</tt> <a class="py-toggle" href="#" id="CIF.tostring-toggle" onclick="return toggle('CIF.tostring');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#tostring">tostring</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_strFilename</tt><tt class="py-op">=</tt><tt class [...]
-</div><div id="CIF.tostring-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.tostring-expanded"><a name="L574"></a><tt class="py-lineno">574</tt> <tt class="py-line"> <tt class="py-docstring">"""converts a cif dictionnary to a string according to the CIF syntax</tt> </tt>
-<a name="L575"></a><tt class="py-lineno">575</tt> <tt class="py-line"><tt class="py-docstring"> @param _strFilename: the name of the filename to be appended in the</tt> </tt>
-<a name="L576"></a><tt class="py-lineno">576</tt> <tt class="py-line"><tt class="py-docstring"> header of the CIF file</tt> </tt>
-<a name="L577"></a><tt class="py-lineno">577</tt> <tt class="py-line"><tt class="py-docstring"> @type _strFilename: string</tt> </tt>
-<a name="L578"></a><tt class="py-lineno">578</tt> <tt class="py-line"><tt class="py-docstring"> @return : a sting that corresponds to the content of the CIF - file.</tt> </tt>
-<a name="L579"></a><tt class="py-lineno">579</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: string</tt> </tt>
-<a name="L580"></a><tt class="py-lineno">580</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L581"></a><tt class="py-lineno">581</tt> <tt class="py-line"><tt class="py-comment"># sCifText = ""</tt> </tt>
-<a name="L582"></a><tt class="py-lineno">582</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"# "</tt> <tt class="py-op">+</tt> <tt id="link-243" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-243', 'i', 'link-105');">i</a></tt> <tt class="py-keyword">for</tt> <tt id="link-244" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href= [...]
-<a name="L583"></a><tt class="py-lineno">583</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"_chemical_name_common"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">:</tt> </tt>
-<a name="L584"></a><tt class="py-lineno">584</tt> <tt class="py-line"> <tt class="py-name">t</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-string">"_chemical_name_common"</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L585"></a><tt class="py-lineno">585</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">_strFilename</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L586"></a><tt class="py-lineno">586</tt> <tt class="py-line"> <tt class="py-name">t</tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">splitext</tt><tt class="py-op">(</tt><tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt>< [...]
-<a name="L587"></a><tt class="py-lineno">587</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L588"></a><tt class="py-lineno">588</tt> <tt class="py-line"> <tt class="py-name">t</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L589"></a><tt class="py-lineno">589</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"data_%s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">t</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L590"></a><tt class="py-lineno">590</tt> <tt class="py-line"> <tt class="py-comment">#first of all get all the keys :</tt> </tt>
-<a name="L591"></a><tt class="py-lineno">591</tt> <tt class="py-line"> <tt class="py-name">lKeys</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L592"></a><tt class="py-lineno">592</tt> <tt class="py-line"> <tt class="py-name">lKeys</tt><tt class="py-op">.</tt><tt class="py-name">sort</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L593"></a><tt class="py-lineno">593</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-245" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-245', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">lKeys</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L594"></a><tt class="py-lineno">594</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-246" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-246', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ordered</tt><tt class="py-op">:</tt> </tt>
-<a name="L595"></a><tt class="py-lineno">595</tt> <tt class="py-line"> <tt class="py-name">lKeys</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt id="link-247" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-247', 'key', 'link-22');">key</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L596"></a><tt class="py-lineno">596</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ordered</tt> <tt class="py-op">+=</tt> <tt class="py-name">lKeys</tt> </tt>
-<a name="L597"></a><tt class="py-lineno">597</tt> <tt class="py-line"> </tt>
-<a name="L598"></a><tt class="py-lineno">598</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">sKey</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ordered</tt><tt class="py-op">:</tt> </tt>
-<a name="L599"></a><tt class="py-lineno">599</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sKey</tt> <tt class="py-op">==</tt> <tt class="py-string">"loop_"</tt><tt class="py-op">:</tt> </tt>
-<a name="L600"></a><tt class="py-lineno">600</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L601"></a><tt class="py-lineno">601</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sKey</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">:</tt> </tt>
-<a name="L602"></a><tt class="py-lineno">602</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_ordered</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt class="py-name">sKey</tt><tt class="py-op">)</tt> </tt>
-<a name="L603"></a><tt class="py-lineno">603</tt> <tt class="py-line"> <tt id="link-248" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-248', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Skipping key %s from ordered list as no more present in dict"</tt><tt class="py-op">)</tt> </tt>
-<a name="L604"></a><tt class="py-lineno">604</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L605"></a><tt class="py-lineno">605</tt> <tt class="py-line"> <tt class="py-name">sValue</tt> <tt class="py-op">=</tt> <tt id="link-249" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-249', 'str', 'link-157');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-name">sKey</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L606"></a><tt class="py-lineno">606</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sValue</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"\n"</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> <tt class="py-comment">#should add value between ;;</tt> </tt>
-<a name="L607"></a><tt class="py-lineno">607</tt> <tt class="py-line"> <tt class="py-name">lLine</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">sKey</tt><tt class="py-op">,</tt> <tt class="py-string">";"</tt><tt class="py-op">,</tt> <tt class="py-name">sValue</tt><tt class="py-op">,</tt> <tt class="py-string">";"</tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">]</tt> </tt>
-<a name="L608"></a><tt class="py-lineno">608</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-250" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-250', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sValue</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-op">> [...]
-<a name="L609"></a><tt class="py-lineno">609</tt> <tt class="py-line"> <tt class="py-name">sLine</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s '%s'"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">sKey</tt><tt class="py-op">,</tt> <tt class="py-name">sValue</tt><tt class="py-op">)</tt> </tt>
-<a name="L610"></a><tt class="py-lineno">610</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-251" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-251', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sLine</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">80</tt><tt class="py-op">:</tt> </tt>
-<a name="L611"></a><tt class="py-lineno">611</tt> <tt class="py-line"> <tt class="py-name">lLine</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-252" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-252', 'str', 'link-157');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">sKey</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">sValue</tt><tt class="py-op">]</tt> </tt>
-<a name="L612"></a><tt class="py-lineno">612</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L613"></a><tt class="py-lineno">613</tt> <tt class="py-line"> <tt class="py-name">lLine</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">sLine</tt><tt class="py-op">]</tt> </tt>
-<a name="L614"></a><tt class="py-lineno">614</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L615"></a><tt class="py-lineno">615</tt> <tt class="py-line"> <tt class="py-name">sLine</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">sKey</tt><tt class="py-op">,</tt> <tt class="py-name">sValue</tt><tt class="py-op">)</tt> </tt>
-<a name="L616"></a><tt class="py-lineno">616</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-253" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-253', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sLine</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">80</tt><tt class="py-op">:</tt> </tt>
-<a name="L617"></a><tt class="py-lineno">617</tt> <tt class="py-line"> <tt class="py-name">lLine</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-254" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-254', 'str', 'link-157');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">sKey</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">sValue</tt><tt class="py-op">]</tt> </tt>
-<a name="L618"></a><tt class="py-lineno">618</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L619"></a><tt class="py-lineno">619</tt> <tt class="py-line"> <tt class="py-name">lLine</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">sLine</tt><tt class="py-op">]</tt> </tt>
-<a name="L620"></a><tt class="py-lineno">620</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt> <tt class="py-op">+=</tt> <tt class="py-name">lLine</tt> </tt>
-<a name="L621"></a><tt class="py-lineno">621</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt class="py-string">"loop_"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L622"></a><tt class="py-lineno">622</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">loop</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-string">"loop_"</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L623"></a><tt class="py-lineno">623</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"loop_ "</tt><tt class="py-op">)</tt> </tt>
-<a name="L624"></a><tt class="py-lineno">624</tt> <tt class="py-line"> <tt class="py-name">lKeys</tt> <tt class="py-op">=</tt> <tt class="py-name">loop</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L625"></a><tt class="py-lineno">625</tt> <tt class="py-line"> <tt class="py-name">llData</tt> <tt class="py-op">=</tt> <tt class="py-name">loop</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
-<a name="L626"></a><tt class="py-lineno">626</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt> <tt class="py-op">+=</tt> <tt class="py-op">[</tt><tt class="py-string">" %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">sKey</tt><tt class="py-op">)</tt> <tt class="py-keyword">for</tt> <tt class="py-name">sKey</tt> <tt class="py-keyword">in</tt> <tt class="py-name">lKeys</tt><tt class="py-op">]</tt> </tt>
-<a name="L627"></a><tt class="py-lineno">627</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">lData</tt> <tt class="py-keyword">in</tt> <tt class="py-name">llData</tt><tt class="py-op">:</tt> </tt>
-<a name="L628"></a><tt class="py-lineno">628</tt> <tt class="py-line"> <tt class="py-name">sLine</tt> <tt class="py-op">=</tt> <tt class="py-string">" "</tt> </tt>
-<a name="L629"></a><tt class="py-lineno">629</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-255" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-255', 'key', 'link-22');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">lKeys</tt><tt class="py-op">:</tt> </tt>
-<a name="L630"></a><tt class="py-lineno">630</tt> <tt class="py-line"> <tt class="py-name">sRawValue</tt> <tt class="py-op">=</tt> <tt class="py-name">lData</tt><tt class="py-op">[</tt><tt id="link-256" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-256', 'key', 'link-22');">key</a></tt><tt class="py-op">]</tt> </tt>
-<a name="L631"></a><tt class="py-lineno">631</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sRawValue</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"\n"</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> <tt class="py-comment">#should add value between ;;</tt> </tt>
-<a name="L632"></a><tt class="py-lineno">632</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt> <tt class="py-op">+=</tt> <tt class="py-op">[</tt><tt class="py-name">sLine</tt><tt class="py-op">,</tt> <tt class="py-string">";"</tt><tt class="py-op">,</tt> <tt id="link-257" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-257', 'str', 'link-157');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">sRawValue</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-string">";"</tt><tt class="py-op">]</tt> </tt>
-<a name="L633"></a><tt class="py-lineno">633</tt> <tt class="py-line"> <tt class="py-name">sLine</tt> <tt class="py-op">=</tt> <tt class="py-string">" "</tt> </tt>
-<a name="L634"></a><tt class="py-lineno">634</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L635"></a><tt class="py-lineno">635</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-258" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-258', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sRawValue</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt c [...]
-<a name="L636"></a><tt class="py-lineno">636</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt class="py-string">"'%s'"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">sRawValue</tt><tt class="py-op">)</tt> </tt>
-<a name="L637"></a><tt class="py-lineno">637</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L638"></a><tt class="py-lineno">638</tt> <tt class="py-line"> <tt class="py-name">value</tt> <tt class="py-op">=</tt> <tt id="link-259" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-259', 'str', 'link-157');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">sRawValue</tt><tt class="py-op">)</tt> </tt>
-<a name="L639"></a><tt class="py-lineno">639</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-260" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-260', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">sLine</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-261" class="py-name"><a title="fabio.file_series.file_series.len" class=" [...]
-<a name="L640"></a><tt class="py-lineno">640</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt> <tt class="py-op">+=</tt> <tt class="py-op">[</tt><tt class="py-name">sLine</tt><tt class="py-op">]</tt> </tt>
-<a name="L641"></a><tt class="py-lineno">641</tt> <tt class="py-line"> <tt class="py-name">sLine</tt> <tt class="py-op">=</tt> <tt class="py-string">" "</tt> <tt class="py-op">+</tt> <tt class="py-name">value</tt> </tt>
-<a name="L642"></a><tt class="py-lineno">642</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L643"></a><tt class="py-lineno">643</tt> <tt class="py-line"> <tt class="py-name">sLine</tt> <tt class="py-op">+=</tt> <tt class="py-string">" "</tt> <tt class="py-op">+</tt> <tt class="py-name">value</tt> </tt>
-<a name="L644"></a><tt class="py-lineno">644</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">sLine</tt><tt class="py-op">)</tt> </tt>
-<a name="L645"></a><tt class="py-lineno">645</tt> <tt class="py-line"> <tt class="py-name">lstStrCif</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">""</tt><tt class="py-op">)</tt> </tt>
-<a name="L646"></a><tt class="py-lineno">646</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">linesep</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lstStrCif</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L647"></a><tt class="py-lineno">647</tt> <tt class="py-line"> </tt>
-<a name="L648"></a><tt class="py-lineno">648</tt> <tt class="py-line"> </tt>
-<a name="CIF.exists"></a><div id="CIF.exists-def"><a name="L649"></a><tt class="py-lineno">649</tt> <a class="py-toggle" href="#" id="CIF.exists-toggle" onclick="return toggle('CIF.exists');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#exists">exists</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">sKey</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="CIF.exists-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.exists-expanded"><a name="L650"></a><tt class="py-lineno">650</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L651"></a><tt class="py-lineno">651</tt> <tt class="py-line"><tt class="py-docstring"> Check if the key exists in the CIF and is non empty.</tt> </tt>
-<a name="L652"></a><tt class="py-lineno">652</tt> <tt class="py-line"><tt class="py-docstring"> @param sKey: CIF key</tt> </tt>
-<a name="L653"></a><tt class="py-lineno">653</tt> <tt class="py-line"><tt class="py-docstring"> @type sKey: string</tt> </tt>
-<a name="L654"></a><tt class="py-lineno">654</tt> <tt class="py-line"><tt class="py-docstring"> @param cif: CIF dictionary</tt> </tt>
-<a name="L655"></a><tt class="py-lineno">655</tt> <tt class="py-line"><tt class="py-docstring"> @return: True if the key exists in the CIF dictionary and is non empty</tt> </tt>
-<a name="L656"></a><tt class="py-lineno">656</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: boolean</tt> </tt>
-<a name="L657"></a><tt class="py-lineno">657</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L658"></a><tt class="py-lineno">658</tt> <tt class="py-line"> <tt class="py-name">bExists</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L659"></a><tt class="py-lineno">659</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt class="py-name">sKey</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L660"></a><tt class="py-lineno">660</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-262" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-262', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-name">sKey</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-op">>=</tt> <tt class="py-number"> [...]
-<a name="L661"></a><tt class="py-lineno">661</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-name">sKey</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">"?"</tt><tt class="py-op">,</tt> <tt class="py-string">"."</tt><tt class="py-op">] [...]
-<a name="L662"></a><tt class="py-lineno">662</tt> <tt class="py-line"> <tt class="py-name">bExists</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L663"></a><tt class="py-lineno">663</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">bExists</tt> </tt>
-</div><a name="L664"></a><tt class="py-lineno">664</tt> <tt class="py-line"> </tt>
-<a name="L665"></a><tt class="py-lineno">665</tt> <tt class="py-line"> </tt>
-<a name="CIF.existsInLoop"></a><div id="CIF.existsInLoop-def"><a name="L666"></a><tt class="py-lineno">666</tt> <a class="py-toggle" href="#" id="CIF.existsInLoop-toggle" onclick="return toggle('CIF.existsInLoop');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#existsInLoop">existsInLoop</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">sKey</tt><tt class="py-op" [...]
-</div><div id="CIF.existsInLoop-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.existsInLoop-expanded"><a name="L667"></a><tt class="py-lineno">667</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L668"></a><tt class="py-lineno">668</tt> <tt class="py-line"><tt class="py-docstring"> Check if the key exists in the CIF dictionary.</tt> </tt>
-<a name="L669"></a><tt class="py-lineno">669</tt> <tt class="py-line"><tt class="py-docstring"> @param sKey: CIF key</tt> </tt>
-<a name="L670"></a><tt class="py-lineno">670</tt> <tt class="py-line"><tt class="py-docstring"> @type sKey: string</tt> </tt>
-<a name="L671"></a><tt class="py-lineno">671</tt> <tt class="py-line"><tt class="py-docstring"> @param cif: CIF dictionary</tt> </tt>
-<a name="L672"></a><tt class="py-lineno">672</tt> <tt class="py-line"><tt class="py-docstring"> @return: True if the key exists in the CIF dictionary and is non empty</tt> </tt>
-<a name="L673"></a><tt class="py-lineno">673</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: boolean</tt> </tt>
-<a name="L674"></a><tt class="py-lineno">674</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L675"></a><tt class="py-lineno">675</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-263" class="py-name" targets="Method fabio.cbfimage.CIF.exists()=fabio.cbfimage.CIF-class.html#exists"><a title="fabio.cbfimage.CIF.exists" class="py-name" href="#" onclick="return doclink('link-263', 'exists', 'link-263');">exists</a></tt><tt class="py-op">(</tt><tt class="py-string [...]
-<a name="L676"></a><tt class="py-lineno">676</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">False</tt> </tt>
-<a name="L677"></a><tt class="py-lineno">677</tt> <tt class="py-line"> <tt class="py-name">bExists</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L678"></a><tt class="py-lineno">678</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">bExists</tt><tt class="py-op">:</tt> </tt>
-<a name="L679"></a><tt class="py-lineno">679</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-264" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-264', 'i', 'link-105');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-string">"loop_"</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L680"></a><tt class="py-lineno">680</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">j</tt> <tt class="py-keyword">in</tt> <tt id="link-265" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-265', 'i', 'link-105');">i</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L681"></a><tt class="py-lineno">681</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">j</tt> <tt class="py-op">==</tt> <tt class="py-name">sKey</tt><tt class="py-op">:</tt> </tt>
-<a name="L682"></a><tt class="py-lineno">682</tt> <tt class="py-line"> <tt class="py-name">bExists</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L683"></a><tt class="py-lineno">683</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">bExists</tt> </tt>
-</div><a name="L684"></a><tt class="py-lineno">684</tt> <tt class="py-line"> </tt>
-<a name="L685"></a><tt class="py-lineno">685</tt> <tt class="py-line"> </tt>
-<a name="CIF.loadCHIPLOT"></a><div id="CIF.loadCHIPLOT-def"><a name="L686"></a><tt class="py-lineno">686</tt> <a class="py-toggle" href="#" id="CIF.loadCHIPLOT-toggle" onclick="return toggle('CIF.loadCHIPLOT');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#loadCHIPLOT">loadCHIPLOT</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_strFilename</tt><tt class="py-o [...]
-</div><div id="CIF.loadCHIPLOT-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.loadCHIPLOT-expanded"><a name="L687"></a><tt class="py-lineno">687</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L688"></a><tt class="py-lineno">688</tt> <tt class="py-line"><tt class="py-docstring"> Load the powder diffraction CHIPLOT file and returns the</tt> </tt>
-<a name="L689"></a><tt class="py-lineno">689</tt> <tt class="py-line"><tt class="py-docstring"> pd_CIF dictionary in the object</tt> </tt>
-<a name="L690"></a><tt class="py-lineno">690</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L691"></a><tt class="py-lineno">691</tt> <tt class="py-line"><tt class="py-docstring"> @param _strFilename: the name of the file to open</tt> </tt>
-<a name="L692"></a><tt class="py-lineno">692</tt> <tt class="py-line"><tt class="py-docstring"> @type _strFilename: string</tt> </tt>
-<a name="L693"></a><tt class="py-lineno">693</tt> <tt class="py-line"><tt class="py-docstring"> @return: the CIF object corresponding to the powder diffraction</tt> </tt>
-<a name="L694"></a><tt class="py-lineno">694</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: dictionary</tt> </tt>
-<a name="L695"></a><tt class="py-lineno">695</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L696"></a><tt class="py-lineno">696</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">isfile</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L697"></a><tt class="py-lineno">697</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"I cannot find the file %s"</tt> <tt class="py-op">%</tt> <tt class="py-name">_strFilename</tt> </tt>
-<a name="L698"></a><tt class="py-lineno">698</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> </tt>
-<a name="L699"></a><tt class="py-lineno">699</tt> <tt class="py-line"> <tt class="py-name">lInFile</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">_strFilename</tt><tt class="py-op">,</tt> <tt class="py-string">"r"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">readlines</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L700"></a><tt class="py-lineno">700</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-string">"_audit_creation_method"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">'From 2-D detector using FIT2D and CIFfile'</tt> </tt>
-<a name="L701"></a><tt class="py-lineno">701</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-string">"_pd_meas_scan_method"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"fixed"</tt> </tt>
-<a name="L702"></a><tt class="py-lineno">702</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-string">"_pd_spec_description"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">lInFile</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L703"></a><tt class="py-lineno">703</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L704"></a><tt class="py-lineno">704</tt> <tt class="py-line"> <tt class="py-name">iLenData</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">lInFile</tt><tt class="py-op">[</tt><tt class="py-number">3</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L705"></a><tt class="py-lineno">705</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L706"></a><tt class="py-lineno">706</tt> <tt class="py-line"> <tt class="py-name">iLenData</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L707"></a><tt class="py-lineno">707</tt> <tt class="py-line"> <tt class="py-name">lOneLoop</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L708"></a><tt class="py-lineno">708</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L709"></a><tt class="py-lineno">709</tt> <tt class="py-line"> <tt class="py-name">f2ThetaMin</tt> <tt class="py-op">=</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">lInFile</tt><tt class="py-op">[</tt><tt class="py-number">4</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt clas [...]
-<a name="L710"></a><tt class="py-lineno">710</tt> <tt class="py-line"> <tt id="link-266" class="py-name" targets="Method fabio.file_series.file_series.last()=fabio.file_series.file_series-class.html#last"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-266', 'last', 'link-266');">last</a></tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L711"></a><tt class="py-lineno">711</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">sLine</tt> <tt class="py-keyword">in</tt> <tt class="py-name">lInFile</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">20</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L712"></a><tt class="py-lineno">712</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sLine</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-string">""</tt><tt class="py-op">:</tt> </tt>
-<a name="L713"></a><tt class="py-lineno">713</tt> <tt class="py-line"> <tt id="link-267" class="py-name"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-267', 'last', 'link-266');">last</a></tt> <tt class="py-op">=</tt> <tt class="py-name">sLine</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L714"></a><tt class="py-lineno">714</tt> <tt class="py-line"> <tt class="py-name">f2ThetaMax</tt> <tt class="py-op">=</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt id="link-268" class="py-name"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-268', 'last', 'link-266');">last</a></tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op [...]
-<a name="L715"></a><tt class="py-lineno">715</tt> <tt class="py-line"> <tt class="py-name">limitsOK</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L716"></a><tt class="py-lineno">716</tt> <tt class="py-line"> </tt>
-<a name="L717"></a><tt class="py-lineno">717</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-op">(</tt><tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-name">IndexError</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L718"></a><tt class="py-lineno">718</tt> <tt class="py-line"> <tt class="py-name">limitsOK</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L719"></a><tt class="py-lineno">719</tt> <tt class="py-line"> <tt class="py-name">f2ThetaMin</tt> <tt class="py-op">=</tt> <tt class="py-number">180.0</tt> </tt>
-<a name="L720"></a><tt class="py-lineno">720</tt> <tt class="py-line"> <tt class="py-name">f2ThetaMax</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L721"></a><tt class="py-lineno">721</tt> <tt class="py-line"><tt class="py-comment"># print "limitsOK:", limitsOK</tt> </tt>
-<a name="L722"></a><tt class="py-lineno">722</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">sLine</tt> <tt class="py-keyword">in</tt> <tt class="py-name">lInFile</tt><tt class="py-op">[</tt><tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L723"></a><tt class="py-lineno">723</tt> <tt class="py-line"> <tt class="py-name">sCleaned</tt> <tt class="py-op">=</tt> <tt class="py-name">sLine</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">"#"</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L724"></a><tt class="py-lineno">724</tt> <tt class="py-line"> <tt id="link-269" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-269', 'data', 'link-15');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">sCleaned</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L725"></a><tt class="py-lineno">725</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-270" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-270', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt id="link-271" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-271', 'data', 'link-15');">data</a></tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt> <tt class="py-op">:</tt> </tt>
-<a name="L726"></a><tt class="py-lineno">726</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">limitsOK</tt><tt class="py-op">:</tt> </tt>
-<a name="L727"></a><tt class="py-lineno">727</tt> <tt class="py-line"> <tt class="py-name">f2Theta</tt> <tt class="py-op">=</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt id="link-272" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-272', 'data', 'link-15');">data</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L728"></a><tt class="py-lineno">728</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">f2Theta</tt> <tt class="py-op"><</tt> <tt class="py-name">f2ThetaMin</tt> <tt class="py-op">:</tt> </tt>
-<a name="L729"></a><tt class="py-lineno">729</tt> <tt class="py-line"> <tt class="py-name">f2ThetaMin</tt> <tt class="py-op">=</tt> <tt class="py-name">f2Theta</tt> </tt>
-<a name="L730"></a><tt class="py-lineno">730</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">f2Theta</tt> <tt class="py-op">></tt> <tt class="py-name">f2ThetaMax</tt> <tt class="py-op">:</tt> </tt>
-<a name="L731"></a><tt class="py-lineno">731</tt> <tt class="py-line"> <tt class="py-name">f2ThetaMax</tt> <tt class="py-op">=</tt> <tt class="py-name">f2Theta</tt> </tt>
-<a name="L732"></a><tt class="py-lineno">732</tt> <tt class="py-line"> <tt class="py-name">lOneLoop</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-op">{</tt> <tt class="py-string">"_pd_meas_intensity_total"</tt><tt class="py-op">:</tt> <tt id="link-273" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-273', 'data', 'link-15');">data</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">}</tt><tt class="py-op">)</tt> </tt>
-<a name="L733"></a><tt class="py-lineno">733</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">iLenData</tt><tt class="py-op">:</tt> </tt>
-<a name="L734"></a><tt class="py-lineno">734</tt> <tt class="py-line"> <tt class="py-name">iLenData</tt> <tt class="py-op">=</tt> <tt id="link-274" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-274', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">lOneLoop</tt><tt class="py-op">)</tt> </tt>
-<a name="L735"></a><tt class="py-lineno">735</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-op">(</tt><tt class="py-name">iLenData</tt> <tt class="py-op">==</tt> <tt id="link-275" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-275', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">lOneLoop</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L736"></a><tt class="py-lineno">736</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt class="py-string">"_pd_meas_2theta_range_inc"</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"%.4f"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">f2ThetaMax</tt> <tt class="py-op">-</tt> <tt class="py-name">f2ThetaMin</tt><tt class="py-op">)</tt> <tt class="py-op">/</tt> < [...]
-<a name="L737"></a><tt class="py-lineno">737</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt class="py-string">"_pd_meas_2theta_range_inc"</tt> <tt class="py-op">]</tt> <tt class="py-op"><</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L738"></a><tt class="py-lineno">738</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt class="py-string">"_pd_meas_2theta_range_inc"</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">abs</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">[</tt> <tt class="py-string">"_pd_meas_2theta_range_inc"</tt> <tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L739"></a><tt class="py-lineno">739</tt> <tt class="py-line"> <tt class="py-name">tmp</tt> <tt class="py-op">=</tt> <tt class="py-name">f2ThetaMax</tt> </tt>
-<a name="L740"></a><tt class="py-lineno">740</tt> <tt class="py-line"> <tt class="py-name">f2ThetaMax</tt> <tt class="py-op">=</tt> <tt class="py-name">f2ThetaMin</tt> </tt>
-<a name="L741"></a><tt class="py-lineno">741</tt> <tt class="py-line"> <tt class="py-name">f2ThetaMin</tt> <tt class="py-op">=</tt> <tt class="py-name">tmp</tt> </tt>
-<a name="L742"></a><tt class="py-lineno">742</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt class="py-string">"_pd_meas_2theta_range_max"</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"%.4f"</tt> <tt class="py-op">%</tt> <tt class="py-name">f2ThetaMax</tt> </tt>
-<a name="L743"></a><tt class="py-lineno">743</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt class="py-string">"_pd_meas_2theta_range_min"</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"%.4f"</tt> <tt class="py-op">%</tt> <tt class="py-name">f2ThetaMin</tt> </tt>
-<a name="L744"></a><tt class="py-lineno">744</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt> <tt class="py-string">"_pd_meas_number_of_points"</tt> <tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-276" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-276', 'str', 'link-157');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">iLenData</tt><tt class="py-op">)</tt> </tt>
-<a name="L745"></a><tt class="py-lineno">745</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-string">"loop_"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> <tt class="py-op">[</tt> <tt class="py-op">[</tt><tt class="py-string">"_pd_meas_intensity_total"</tt> <tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">lOneLoop</tt> <tt class="py-op">]</tt> <tt class="py-op">]</tt> </tt>
-</div><a name="L746"></a><tt class="py-lineno">746</tt> <tt class="py-line"> </tt>
-<a name="L747"></a><tt class="py-lineno">747</tt> <tt class="py-line"> </tt>
-<a name="L748"></a><tt class="py-lineno">748</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="CIF.LoopHasKey"></a><div id="CIF.LoopHasKey-def"><a name="L749"></a><tt class="py-lineno">749</tt> <a class="py-toggle" href="#" id="CIF.LoopHasKey-toggle" onclick="return toggle('CIF.LoopHasKey');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.cbfimage.CIF-class.html#LoopHasKey">LoopHasKey</a><tt class="py-op">(</tt><tt class="py-param">loop</tt><tt class="py-op">,</tt> <tt class="py-param">key</tt><tt class="py-op">)</tt><tt cl [...]
-</div><div id="CIF.LoopHasKey-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="CIF.LoopHasKey-expanded"><a name="L750"></a><tt class="py-lineno">750</tt> <tt class="py-line"> <tt class="py-docstring">"Returns True if the key (string) exist in the array called loop"</tt><tt class="py-string">""</tt> </tt>
-<a name="L751"></a><tt class="py-lineno">751</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L752"></a><tt class="py-lineno">752</tt> <tt class="py-line"> <tt class="py-name">loop</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt id="link-277" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-277', 'key', 'link-22');">key</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L753"></a><tt class="py-lineno">753</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">True</tt> </tt>
-<a name="L754"></a><tt class="py-lineno">754</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L755"></a><tt class="py-lineno">755</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">False</tt> </tt>
-</div></div><a name="L756"></a><tt class="py-lineno">756</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
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diff --git a/doc/html/fabio.cbfimage.CIF-class.html b/doc/html/fabio.cbfimage.CIF-class.html
deleted file mode 100644
index b66a023..0000000
--- a/doc/html/fabio.cbfimage.CIF-class.html
+++ /dev/null
@@ -1,1068 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.cbfimage.CIF</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
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- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.cbfimage-module.html">Module cbfimage</a> ::
- Class CIF
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.cbfimage.CIF-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
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-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class CIF</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- dict --+
- |
- <strong class="uidshort">CIF</strong>
-</pre>
-
-<hr />
-<p>This is the CIF class, it represents the CIF dictionary; and as a a
- python dictionary thus inherits from the dict built in class.</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
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- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"><pre class="literalblock">
-new empty dictionary
-
-</pre></span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_strFilename</span>=<span class="summary-sig-default">None</span>)</span><br />
- Constructor of the class.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#__setitem__" class="summary-sig-name">__setitem__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">key</span>,
- <span class="summary-sig-arg">value</span>)</span><br />
- x[i]=y</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.__setitem__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">v, remove specified key and return the corresponding value</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#pop" class="summary-sig-name">pop</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">key</span>)</span><br />
- If key is not found, d is returned if given, otherwise KeyError is
- raised</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.pop">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">(k, v), remove and return some (key, value) pair as a</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#popitem" class="summary-sig-name">popitem</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">key</span>)</span><br />
- 2-tuple; but raise KeyError if D is empty.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.popitem">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#loadCIF" class="summary-sig-name">loadCIF</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_strFilename</span>,
- <span class="summary-sig-arg">_bKeepComment</span>=<span class="summary-sig-default">False</span>)</span><br />
- Load the CIF file and populates the CIF dictionary into the object</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.loadCIF">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#readCIF" class="summary-sig-name">readCIF</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_strFilename</span>,
- <span class="summary-sig-arg">_bKeepComment</span>=<span class="summary-sig-default">False</span>)</span><br />
- Load the CIF file and populates the CIF dictionary into the object</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.loadCIF">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">None</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#_parseCIF" class="summary-sig-name" onclick="show_private();">_parseCIF</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">sText</span>)</span><br />
- Parses the text of a CIF file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF._parseCIF">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#saveCIF" class="summary-sig-name">saveCIF</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_strFilename</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">test.cif</code><code class="variable-quote">'</code></span>,
- <span class="summary-sig-arg">linesep</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">\n</code><code class="variable-quote">'</code></span>,
- <span class="summary-sig-arg">binary</span>=<span class="summary-sig-default">False</span>)</span><br />
- Transforms the CIF object in string then write it into the given file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.saveCIF">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#tostring" class="summary-sig-name">tostring</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_strFilename</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">linesep</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">\n</code><code class="variable-quote">'</code></span>)</span><br />
- converts a cif dictionnary to a string according to the CIF syntax</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.tostring">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">boolean</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#exists" class="summary-sig-name">exists</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">sKey</span>)</span><br />
- Check if the key exists in the CIF and is non empty.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.exists">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">boolean</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#existsInLoop" class="summary-sig-name">existsInLoop</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">sKey</span>)</span><br />
- Check if the key exists in the CIF dictionary.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.existsInLoop">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">dictionary</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#loadCHIPLOT" class="summary-sig-name">loadCHIPLOT</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_strFilename</span>)</span><br />
- Load the powder diffraction CHIPLOT file and returns the pd_CIF
- dictionary in the object</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.loadCHIPLOT">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>dict</code></b>:
- <code>__cmp__</code>,
- <code>__contains__</code>,
- <code>__delitem__</code>,
- <code>__eq__</code>,
- <code>__ge__</code>,
- <code>__getattribute__</code>,
- <code>__getitem__</code>,
- <code>__gt__</code>,
- <code>__iter__</code>,
- <code>__le__</code>,
- <code>__len__</code>,
- <code>__lt__</code>,
- <code>__ne__</code>,
- <code>__new__</code>,
- <code>__repr__</code>,
- <code>__sizeof__</code>,
- <code>clear</code>,
- <code>copy</code>,
- <code>fromkeys</code>,
- <code>get</code>,
- <code>has_key</code>,
- <code>items</code>,
- <code>iteritems</code>,
- <code>iterkeys</code>,
- <code>itervalues</code>,
- <code>keys</code>,
- <code>setdefault</code>,
- <code>update</code>,
- <code>values</code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__setattr__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">boolean</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#isAscii" class="summary-sig-name">isAscii</a>(<span class="summary-sig-arg">_strIn</span>)</span><br />
- Check if all characters in a string are ascii,</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.isAscii">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#_readCIF" class="summary-sig-name" onclick="show_private();">_readCIF</a>(<span class="summary-sig-arg">_instream</span>)</span><br />
- Check if the filename containing the CIF data exists</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF._readCIF">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">list</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#_splitCIF" class="summary-sig-name" onclick="show_private();">_splitCIF</a>(<span class="summary-sig-arg">sText</span>)</span><br />
- Separate the text in fields as defined in the CIF</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF._splitCIF">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">tuple</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.CIF-class.html#_analyseOneLoop" class="summary-sig-name" onclick="show_private();">_analyseOneLoop</a>(<span class="summary-sig-arg">lFields</span>,
- <span class="summary-sig-arg">iStart</span>)</span><br />
- Processes one loop in the data extraction of the CIF file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF._analyseOneLoop">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="LoopHasKey"></a><span class="summary-sig-name">LoopHasKey</span>(<span class="summary-sig-arg">loop</span>,
- <span class="summary-sig-arg">key</span>)</span><br />
- Returns True if the key (string) exist in the array called loop</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.LoopHasKey">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="EOL"></a><span class="summary-name">EOL</span> = <code title="['\r', '\n', '\r\n', '\n\r']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">\r</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">\n</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class=" [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="BLANK"></a><span class="summary-name">BLANK</span> = <code title="[' ', '\t', '\r', '\n', '\r\n', '\n\r']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string"> </code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">\t</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="START_COMMENT"></a><span class="summary-name">START_COMMENT</span> = <code title="['"', '\'']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">"</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">\'</code><code class="variable-quote">'</code><code class="variable-group">]</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="BINARY_MARKER"></a><span class="summary-name">BINARY_MARKER</span> = <code title="'--CIF-BINARY-FORMAT-SECTION--'"><code class="variable-quote">'</code><code class="variable-string">--CIF-BINARY-FORMAT-SECTION--</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>dict</code></b>:
- <code>__hash__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_strFilename</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Constructor of the class.</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strFilename</code></strong> (filename (str) or file object) - the name of the file to open</li>
- </ul></dd>
- <dt>Returns: <pre class="literalblock">
-new empty dictionary
-
-</pre></dt>
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="__setitem__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__setitem__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">key</span>,
- <span class="sig-arg">value</span>)</span>
- <br /><em class="fname">(Index assignment operator)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.__setitem__">source code</a></span>
- </td>
- </tr></table>
-
- <p>x[i]=y</p>
- <dl class="fields">
- <dt>Overrides:
- dict.__setitem__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="pop"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">pop</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">key</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.pop">source code</a></span>
- </td>
- </tr></table>
-
- <p>If key is not found, d is returned if given, otherwise KeyError is
- raised</p>
- <dl class="fields">
- <dt>Returns: v, remove specified key and return the corresponding value</dt>
- <dt>Overrides:
- dict.pop
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="popitem"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">popitem</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">key</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.popitem">source code</a></span>
- </td>
- </tr></table>
-
- <p>2-tuple; but raise KeyError if D is empty.</p>
- <dl class="fields">
- <dt>Returns: (k, v), remove and return some (key, value) pair as a</dt>
- <dt>Overrides:
- dict.popitem
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="loadCIF"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">loadCIF</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_strFilename</span>,
- <span class="sig-arg">_bKeepComment</span>=<span class="sig-default">False</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.loadCIF">source code</a></span>
- </td>
- </tr></table>
-
- <p>Load the CIF file and populates the CIF dictionary into the object</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strFilename</code></strong> (string) - the name of the file to open</li>
- <li><strong class="pname"><code>_strFilename</code></strong> (string) - the name of the file to open</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>None</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="readCIF"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">readCIF</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_strFilename</span>,
- <span class="sig-arg">_bKeepComment</span>=<span class="sig-default">False</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.loadCIF">source code</a></span>
- </td>
- </tr></table>
-
- <p>Load the CIF file and populates the CIF dictionary into the object</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strFilename</code></strong> (string) - the name of the file to open</li>
- <li><strong class="pname"><code>_strFilename</code></strong> (string) - the name of the file to open</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>None</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="isAscii"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">isAscii</span>(<span class="sig-arg">_strIn</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.isAscii">source code</a></span>
- </td>
- </tr></table>
-
- <p>Check if all characters in a string are ascii,</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strIn</code></strong> (python string) - input string</li>
- </ul></dd>
- <dt>Returns: boolean</dt>
- <dd>boolean</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readCIF"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readCIF</span>(<span class="sig-arg">_instream</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF._readCIF">source code</a></span>
- </td>
- </tr></table>
-
- <ul>
- <li>
- Check if the filename containing the CIF data exists
- </li>
- <li>
- read the cif file
- </li>
- <li>
- removes the comments
- </li>
- </ul>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_instream</code></strong> (open file in read mode) - the file containing the CIF data</li>
- </ul></dd>
- <dt>Returns: string</dt>
- <dd>a string containing the raw data</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="_parseCIF"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_parseCIF</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">sText</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF._parseCIF">source code</a></span>
- </td>
- </tr></table>
-
- <ul>
- <li>
- Parses the text of a CIF file
- </li>
- <li>
- Cut it in fields
- </li>
- <li>
- Find all the loops and process
- </li>
- <li>
- Find all the keys and values
- </li>
- </ul>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>sText</code></strong> (string) - the content of the CIF - file</li>
- </ul></dd>
- <dt>Returns: None</dt>
- <dd>Nothing, the data are incorporated at the CIF object dictionary</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="_splitCIF"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_splitCIF</span>(<span class="sig-arg">sText</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF._splitCIF">source code</a></span>
- </td>
- </tr></table>
-
- <p>Separate the text in fields as defined in the CIF</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>sText</code></strong> (string) - the content of the CIF - file</li>
- </ul></dd>
- <dt>Returns: list</dt>
- <dd>list of all the fields of the CIF</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="_analyseOneLoop"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_analyseOneLoop</span>(<span class="sig-arg">lFields</span>,
- <span class="sig-arg">iStart</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF._analyseOneLoop">source code</a></span>
- </td>
- </tr></table>
-
- <p>Processes one loop in the data extraction of the CIF file</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>lFields</code></strong> (list) - list of all the words contained in the cif file</li>
- <li><strong class="pname"><code>iStart</code></strong> (integer) - the starting index corresponding to the "loop_" key</li>
- </ul></dd>
- <dt>Returns: tuple</dt>
- <dd>the list of loop dictionaries, the length of the data extracted
- from the lFields and the list of all the keys of the loop.</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="saveCIF"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">saveCIF</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_strFilename</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">test.cif</code><code class="variable-quote">'</code></span>,
- <span class="sig-arg">linesep</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">\n</code><code class="variable-quote">'</code></span>,
- <span class="sig-arg">binary</span>=<span class="sig-default">False</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.saveCIF">source code</a></span>
- </td>
- </tr></table>
-
- <p>Transforms the CIF object in string then write it into the given
- file</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strFilename</code></strong> - the of the file to be written</li>
- <li><strong class="pname"><code>linesep</code></strong> - line separation used (to force compatibility with windows/unix)</li>
- <li><strong class="pname"><code>binary</code></strong> - Shall we write the data as binary (True only for imageCIF/CBF)</li>
- <li><strong class="pname"><code>param</code></strong> (string)</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="tostring"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">tostring</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_strFilename</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">linesep</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">\n</code><code class="variable-quote">'</code></span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.tostring">source code</a></span>
- </td>
- </tr></table>
-
- <p>converts a cif dictionnary to a string according to the CIF syntax</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strFilename</code></strong> (string @return : a sting that corresponds to the content of the
- CIF - file.) - the name of the filename to be appended in the header of the CIF
- file</li>
- </ul></dd>
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="exists"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">exists</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">sKey</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.exists">source code</a></span>
- </td>
- </tr></table>
-
- <p>Check if the key exists in the CIF and is non empty.</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>sKey</code></strong> (string) - CIF key</li>
- <li><strong class="pname"><code>cif</code></strong> - CIF dictionary</li>
- </ul></dd>
- <dt>Returns: boolean</dt>
- <dd>True if the key exists in the CIF dictionary and is non empty</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="existsInLoop"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">existsInLoop</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">sKey</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.existsInLoop">source code</a></span>
- </td>
- </tr></table>
-
- <p>Check if the key exists in the CIF dictionary.</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>sKey</code></strong> (string) - CIF key</li>
- <li><strong class="pname"><code>cif</code></strong> - CIF dictionary</li>
- </ul></dd>
- <dt>Returns: boolean</dt>
- <dd>True if the key exists in the CIF dictionary and is non empty</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="loadCHIPLOT"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">loadCHIPLOT</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_strFilename</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#CIF.loadCHIPLOT">source code</a></span>
- </td>
- </tr></table>
-
- <p>Load the powder diffraction CHIPLOT file and returns the pd_CIF
- dictionary in the object</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strFilename</code></strong> (string) - the name of the file to open</li>
- </ul></dd>
- <dt>Returns: dictionary</dt>
- <dd>the CIF object corresponding to the powder diffraction</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
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- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.cbfimage.cbfimage-class.html b/doc/html/fabio.cbfimage.cbfimage-class.html
deleted file mode 100644
index 38713ca..0000000
--- a/doc/html/fabio.cbfimage.cbfimage-class.html
+++ /dev/null
@@ -1,554 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.cbfimage.cbfimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.cbfimage-module.html">Module cbfimage</a> ::
- Class cbfimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.cbfimage.cbfimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class cbfimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">cbfimage</strong>
-</pre>
-
-<hr />
-<p>Read the Cif Binary File data format</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.cbfimage-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">header</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">fname</span>=<span class="summary-sig-default">None</span>)</span><br />
- Constructor of the class CIF Binary File reader.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.cbfimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">inStream</span>)</span><br />
- Read in a header in some CBF format from a string representing binary
- stuff</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.cbfimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">numpy array</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.cbfimage-class.html#_readbinary_byte_offset" class="summary-sig-name" onclick="show_private();">_readbinary_byte_offset</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">inStream</span>)</span><br />
- Read in a binary part of an x-CBF_BYTE_OFFSET compressed image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage._readbinary_byte_offset">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.cbfimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- write the file in CBF format</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cbfimage.cbfimage-class.html#checkData" class="summary-sig-name">checkData</a>(<span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage.checkData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">data</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">header</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">fname</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Constructor of the class CIF Binary File reader.</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strFilename</code></strong> (string) - the name of the file to open</li>
- </ul></dd>
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="checkData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">checkData</span>(<span class="sig-arg">data</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage.checkData">source code</a></span>
- </td>
- </tr></table>
-
- <p>Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#checkData">fabioimage.fabioimage.checkData</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">inStream</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in a header in some CBF format from a string representing binary
- stuff</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>inStream</code></strong> (opened file.) - file containing the Cif Binary part.</li>
- </ul></dd>
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Read in header into self.header and
- the data into self.data
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readbinary_byte_offset"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readbinary_byte_offset</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">inStream</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage._readbinary_byte_offset">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in a binary part of an x-CBF_BYTE_OFFSET compressed image</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>inStream</code></strong> (python string.) - the binary image (without any CIF decorators)</li>
- </ul></dd>
- <dt>Returns: numpy array</dt>
- <dd>a linear numpy array without shape and dtype set</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.cbfimage-pysrc.html#cbfimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>write the file in CBF format</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>fname</code></strong> - name of the file</li>
- </ul></dd>
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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-</table>
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- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.cf_io-module.html b/doc/html/fabio.cf_io-module.html
deleted file mode 100644
index 267c750..0000000
--- a/doc/html/fabio.cf_io-module.html
+++ /dev/null
@@ -1,205 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.cf_io</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
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- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module cf_io
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.cf_io-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module cf_io</h1><p class="nomargin-top"></p>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Functions</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.cf_io-module.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">...</span>)</span><br />
- call the c-columnfile reading interface.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
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- class="privatelink" onclick="toggle_private();"
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- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="None">None</code><br />
- hash(x)
- </td>
- </tr>
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-<!-- ==================== FUNCTION DETAILS ==================== -->
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- <td align="right" valign="top"
- ><span class="options">[<a href="#section-FunctionDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
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- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>call the c-columnfile reading interface. The mode keyword argument is
- either: "a" for ascii (the default) "b" for
- binary</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
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diff --git a/doc/html/fabio.compression-module.html b/doc/html/fabio.compression-module.html
deleted file mode 100644
index 3927cb7..0000000
--- a/doc/html/fabio.compression-module.html
+++ /dev/null
@@ -1,739 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
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- <a href="fabio-module.html">Package fabio</a> ::
- Module compression
- </span>
- </td>
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- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
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- >] | <a href="fabio.compression-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
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-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module compression</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.compression-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr
-
-FabIO library containing compression and decompression algorithm for various
-
-</pre>
-
-<hr />
-<div class="fields"> <p><strong>Author:</strong>
- J\xc3\xa9r\xc3\xb4me Kieffer
- </p>
- <p><strong>Contact:</strong>
- jerome.kieffer at esrf.eu
- </p>
- <p><strong>Copyright:</strong>
- European Synchrotron Radiation Facility, Grenoble, France
- </p>
- <p><strong>License:</strong>
- GPLv3+
- </p>
-</div><!-- ==================== CLASSES ==================== -->
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="str-class.html" class="summary-name">str</a><br />
- str(object) -> string
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="md5sum"></a><span class="summary-sig-name">md5sum</span>(<span class="summary-sig-arg">blob</span>)</span><br />
- returns the md5sum of an object...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#md5sum">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="endianness"></a><span class="summary-sig-name">endianness</span>()</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#endianness">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="decGzip"></a><span class="summary-sig-name">decGzip</span>(<span class="summary-sig-arg">stream</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decGzip">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="decBzip2"></a><span class="summary-sig-name">decBzip2</span>(<span class="summary-sig-arg">stream</span>)</span><br />
- decompress a chunk of data using the bzip2 algorithm</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decBzip2">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="decZlib"></a><span class="summary-sig-name">decZlib</span>(<span class="summary-sig-arg">stream</span>)</span><br />
- decompress a chunk of data using the zlib algorithm</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decZlib">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#decByteOffet_python" class="summary-sig-name">decByteOffet_python</a>(<span class="summary-sig-arg">stream</span>,
- <span class="summary-sig-arg">size</span>)</span><br />
- Analyze a stream of char with any length of exception (2,4, or 8
- bytes integers)</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decByteOffet_python">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#decByteOffet_weave" class="summary-sig-name">decByteOffet_weave</a>(<span class="summary-sig-arg">stream</span>,
- <span class="summary-sig-arg">size</span>)</span><br />
- Analyze a stream of char with any length of exception (2,4, or 8
- bytes integers)</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decByteOffet_weave">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#decByteOffet_numpy" class="summary-sig-name">decByteOffet_numpy</a>(<span class="summary-sig-arg">stream</span>,
- <span class="summary-sig-arg">size</span>=<span class="summary-sig-default">None</span>)</span><br />
- Analyze a stream of char with any length of exception:
- 2, 4, or 8 bytes integers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decByteOffet_numpy">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#decByteOffet_cython" class="summary-sig-name">decByteOffet_cython</a>(<span class="summary-sig-arg">stream</span>,
- <span class="summary-sig-arg">size</span>=<span class="summary-sig-default">None</span>)</span><br />
- Analyze a stream of char with any length of exception:
- 2, 4, or 8 bytes integers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decByteOffet_cython">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#compByteOffet_numpy" class="summary-sig-name">compByteOffet_numpy</a>(<span class="summary-sig-arg">data</span>)</span><br />
- Compress a dataset into a string using the byte_offet algorithm</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#compByteOffet_numpy">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#decTY1" class="summary-sig-name">decTY1</a>(<span class="summary-sig-arg">raw_8</span>,
- <span class="summary-sig-arg">raw_16</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">raw_32</span>=<span class="summary-sig-default">None</span>)</span><br />
- Modified byte offset decompressor used in Oxford Diffraction images</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decTY1">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#decKM4CCD" class="summary-sig-name">decKM4CCD</a>(<span class="summary-sig-arg">raw_8</span>,
- <span class="summary-sig-arg">raw_16</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">raw_32</span>=<span class="summary-sig-default">None</span>)</span><br />
- Modified byte offset decompressor used in Oxford Diffraction images</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decTY1">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#compTY1" class="summary-sig-name">compTY1</a>(<span class="summary-sig-arg">data</span>)</span><br />
- Modified byte offset compressor used in Oxford Diffraction images</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#compTY1">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#decPCK" class="summary-sig-name">decPCK</a>(<span class="summary-sig-arg">stream</span>,
- <span class="summary-sig-arg">dim1</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">dim2</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">overflowPix</span>=<span class="summary-sig-default">None</span>)</span><br />
- Modified CCP4 pck decompressor used in MAR345 images</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#decPCK">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.compression-module.html#compPCK" class="summary-sig-name">compPCK</a>(<span class="summary-sig-arg">data</span>)</span><br />
- Modified CCP4 pck compressor used in MAR345 images</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.compression-pysrc.html#compPCK">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("compression")">logging.getLogger("compression")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTION DETAILS ==================== -->
-<a name="section-FunctionDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Function Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-FunctionDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
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- </td>
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-</table>
-<a name="decByteOffet_python"></a>
-<div>
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- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">decByteOffet_python</span>(<span class="sig-arg">stream</span>,
- <span class="sig-arg">size</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#decByteOffet_python">source code</a></span>
- </td>
- </tr></table>
-
- <p>Analyze a stream of char with any length of exception (2,4, or 8 bytes
- integers)</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>stream</code></strong> - string representing the compressed data</li>
- <li><strong class="pname"><code>size</code></strong> - the size of the output array (of longInts) @return :NParrays</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="decByteOffet_weave"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">decByteOffet_weave</span>(<span class="sig-arg">stream</span>,
- <span class="sig-arg">size</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#decByteOffet_weave">source code</a></span>
- </td>
- </tr></table>
-
- <p>Analyze a stream of char with any length of exception (2,4, or 8 bytes
- integers)</p>
- <p>@return list of NParrays</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="decByteOffet_numpy"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">decByteOffet_numpy</span>(<span class="sig-arg">stream</span>,
- <span class="sig-arg">size</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#decByteOffet_numpy">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Analyze a stream of char with any length of exception:
- 2, 4, or 8 bytes integers
-
- at return list of NParrays
-
-</pre>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="decByteOffet_cython"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">decByteOffet_cython</span>(<span class="sig-arg">stream</span>,
- <span class="sig-arg">size</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#decByteOffet_cython">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Analyze a stream of char with any length of exception:
- 2, 4, or 8 bytes integers
-
- at return list of NParrays
-
-</pre>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="compByteOffet_numpy"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">compByteOffet_numpy</span>(<span class="sig-arg">data</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#compByteOffet_numpy">source code</a></span>
- </td>
- </tr></table>
-
- <p>Compress a dataset into a string using the byte_offet algorithm</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>data</code></strong> - ndarray</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>string/bytes with compressed data
- <p>test =
- numpy.array([0,1,2,127,0,1,2,128,0,1,2,32767,0,1,2,32768,0,1,2,2147483647,0,1,2,2147483648,0,1,2,128,129,130,32767,32768,128,129,130,32768,2147483647,2147483648])</p></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="decTY1"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">decTY1</span>(<span class="sig-arg">raw_8</span>,
- <span class="sig-arg">raw_16</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">raw_32</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#decTY1">source code</a></span>
- </td>
- </tr></table>
-
- <p>Modified byte offset decompressor used in Oxford Diffraction
- images</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>raw_8</code></strong>, <strong class="pname"><code>raw_16</code></strong>, <strong class="pname"><code>raw_32</code></strong> - strings containing raw data with integer of the given size
- @return numpy.ndarray</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="decKM4CCD"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">decKM4CCD</span>(<span class="sig-arg">raw_8</span>,
- <span class="sig-arg">raw_16</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">raw_32</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#decTY1">source code</a></span>
- </td>
- </tr></table>
-
- <p>Modified byte offset decompressor used in Oxford Diffraction
- images</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>raw_8</code></strong>, <strong class="pname"><code>raw_16</code></strong>, <strong class="pname"><code>raw_32</code></strong> - strings containing raw data with integer of the given size
- @return numpy.ndarray</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="compTY1"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">compTY1</span>(<span class="sig-arg">data</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#compTY1">source code</a></span>
- </td>
- </tr></table>
-
- <p>Modified byte offset compressor used in Oxford Diffraction images</p>
- <p>@param data numpy.ndarray</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="decPCK"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">decPCK</span>(<span class="sig-arg">stream</span>,
- <span class="sig-arg">dim1</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">dim2</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">overflowPix</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#decPCK">source code</a></span>
- </td>
- </tr></table>
-
- <p>Modified CCP4 pck decompressor used in MAR345 images</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>stream</code></strong> - string or file @return numpy.ndarray (square array)</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="compPCK"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">compPCK</span>(<span class="sig-arg">data</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.compression-pysrc.html#compPCK">source code</a></span>
- </td>
- </tr></table>
-
- <p>Modified CCP4 pck compressor used in MAR345 images</p>
- <p>@param data numpy.ndarray (square array) @return compressed
- stream</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
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- <th> <a
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
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- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.compression-pysrc.html b/doc/html/fabio.compression-pysrc.html
deleted file mode 100644
index 3e8db3d..0000000
--- a/doc/html/fabio.compression-pysrc.html
+++ /dev/null
@@ -1,927 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.compression</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module compression
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.compression-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.compression-module.html">Module fabio.compression</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"># coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Authors: Jérôme Kieffer, ESRF </tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> email:jerome.kieffer at esrf.fr</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">FabIO library containing compression and decompression algorithm for various </tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-name">__author__</tt> <tt class="py-op">=</tt> <tt class="py-string">"Jérôme Kieffer"</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-name">__contact__</tt> <tt class="py-op">=</tt> <tt class="py-string">"jerome.kieffer at esrf.eu"</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-name">__license__</tt> <tt class="py-op">=</tt> <tt class="py-string">"GPLv3+"</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-name">__copyright__</tt> <tt class="py-op">=</tt> <tt class="py-string">"European Synchrotron Radiation Facility, Grenoble, France"</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">os</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">struct</tt><tt class="py-op">,</tt> <tt class="py-name">hashlib</tt><tt class="py-op">,</tt> <tt class="py-name">base64</tt><tt class="py-op">,</tt> <tt class="py-name">StringIO</tt><tt class="py-op">,</tt> <tt class="py-name">sys</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">version_info</tt> <tt class="py-op">>=</tt> <tt class="py-op">(</tt><tt class="py-number">3</tt><tt class="py-op">,</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt id="link-0" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-0', 'str', 'link-0');">str</a></tt> <tt class="py-op">=</tt> <tt class="py-name">bytes</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-1', 'logger', 'link-1');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"compression"</tt><tt class="py-op">)</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">gzip</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt id="link-2" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-2', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to import gzip module: disabling gzip compression"</tt><tt class="py-op">)</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-name">gzip</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">bz2</tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt id="link-3" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-3', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to import bz2 module: disabling bz2 compression"</tt><tt class="py-op">)</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-name">bz2</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">zlib</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt id="link-4" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-4', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to import zlib module: disabling zlib compression"</tt><tt class="py-op">)</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-name">zlib</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> </tt>
-<a name="md5sum"></a><div id="md5sum-def"><a name="L39"></a><tt class="py-lineno"> 39</tt> <a class="py-toggle" href="#" id="md5sum-toggle" onclick="return toggle('md5sum');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#md5sum">md5sum</a><tt class="py-op">(</tt><tt class="py-param">blob</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="md5sum-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="md5sum-expanded"><a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"><tt class="py-docstring"> returns the md5sum of an object... </tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">base64</tt><tt class="py-op">.</tt><tt class="py-name">b64encode</tt><tt class="py-op">(</tt><tt class="py-name">hashlib</tt><tt class="py-op">.</tt><tt class="py-name">md5</tt><tt class="py-op">(</tt><tt class="py-name">blob</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">digest</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt cl [...]
-</div><a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="endianness"></a><div id="endianness-def"><a name="L46"></a><tt class="py-lineno"> 46</tt> <a class="py-toggle" href="#" id="endianness-toggle" onclick="return toggle('endianness');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#endianness">endianness</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="endianness-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="endianness-expanded"><a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">little_endian</tt><tt class="py-op">:</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-string">"LITTLE_ENDIAN"</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-string">"BIG_ENDIAN"</tt> </tt>
-</div><a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> </tt>
-<a name="decGzip"></a><div id="decGzip-def"><a name="L53"></a><tt class="py-lineno"> 53</tt> <a class="py-toggle" href="#" id="decGzip-toggle" onclick="return toggle('decGzip');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decGzip">decGzip</a><tt class="py-op">(</tt><tt class="py-param">stream</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="decGzip-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decGzip-expanded"><a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">gzip</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ImportError</tt><tt class="py-op">(</tt><tt class="py-string">"gzip module is not available"</tt><tt class="py-op">)</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-name">fileobj</tt> <tt class="py-op">=</tt> <tt class="py-name">StringIO</tt><tt class="py-op">.</tt><tt class="py-name">StringIO</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">)</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">gzip</tt><tt class="py-op">.</tt><tt class="py-name">GzipFile</tt><tt class="py-op">(</tt><tt class="py-name">fileobj</tt><tt class="py-op">=</tt><tt class="py-name">fileobj</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html# [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-5', 'read', 'link-5');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IOError</tt><tt class="py-op">:</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt id="link-6" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-6', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Encounter the python-gzip bug with trailing garbage, trying subprocess gzip"</tt><tt class="py-op">)</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-comment">#This is as an ugly hack against a bug in Python gzip</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">subprocess</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-name">sub</tt> <tt class="py-op">=</tt> <tt class="py-name">subprocess</tt><tt class="py-op">.</tt><tt class="py-name">Popen</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-string">"gzip"</tt><tt class="py-op">,</tt> <tt class="py-string">"-d"</tt><tt class="py-op">,</tt> <tt class="py-string">"-f"</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">stdou [...]
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-name">rawData</tt><tt class="py-op">,</tt> <tt class="py-name">err</tt> <tt class="py-op">=</tt> <tt class="py-name">sub</tt><tt class="py-op">.</tt><tt class="py-name">communicate</tt><tt class="py-op">(</tt><tt class="py-name">input</tt><tt class="py-op">=</tt><tt class="py-name">stream</tt><tt class="py-op">)</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt id="link-7" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-7', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Gzip subprocess ended with %s err= %s; I got %s bytes back"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">sub</tt><tt class="py-op">.</tt><tt class="py-name">wait</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt [...]
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> <tt class="py-comment">#IGNORE:W0703</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt id="link-9" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-9', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to use the subprocess gzip (%s). Is gzip available? "</tt> <tt class="py-op">%</tt> <tt class="py-name">error</tt><tt class="py-op">)</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-10" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-10', 'i', 'link-10');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-numbe [...]
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-name">fileobj</tt> <tt class="py-op">=</tt> <tt class="py-name">StringIO</tt><tt class="py-op">.</tt><tt class="py-name">StringIO</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt id="link-11" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-11', 'i', [...]
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">gzip</tt><tt class="py-op">.</tt><tt class="py-name">GzipFile</tt><tt class="py-op">(</tt><tt class="py-name">fileobj</tt><tt class="py-op">=</tt><tt class="py-name">fileobj</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-12', 'read', 'link-5');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IOError</tt><tt class="py-op">:</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt id="link-13" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-13', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"trying with %s bytes less, doesn't work"</tt> <tt class="py-op">%</tt> <tt id="link-14" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-14', 'i', 'link-10');">i</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt id="link-15" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-15', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"I am totally unable to read this gzipped compressed data block, giving up"</tt><tt class="py-op">)</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">rawData</tt> </tt>
-</div><a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> </tt>
-<a name="decBzip2"></a><div id="decBzip2-def"><a name="L82"></a><tt class="py-lineno"> 82</tt> <a class="py-toggle" href="#" id="decBzip2-toggle" onclick="return toggle('decBzip2');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decBzip2">decBzip2</a><tt class="py-op">(</tt><tt class="py-param">stream</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="decBzip2-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decBzip2-expanded"><a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt class="py-docstring"> decompress a chunk of data using the bzip2 algorithm</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">bz2</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ImportError</tt><tt class="py-op">(</tt><tt class="py-string">"bz2 module is not available"</tt><tt class="py-op">)</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">bz2</tt><tt class="py-op">.</tt><tt class="py-name">decompress</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> </tt>
-<a name="decZlib"></a><div id="decZlib-def"><a name="L91"></a><tt class="py-lineno"> 91</tt> <a class="py-toggle" href="#" id="decZlib-toggle" onclick="return toggle('decZlib');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decZlib">decZlib</a><tt class="py-op">(</tt><tt class="py-param">stream</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="decZlib-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decZlib-expanded"><a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"><tt class="py-docstring"> decompress a chunk of data using the zlib algorithm</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">zlib</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ImportError</tt><tt class="py-op">(</tt><tt class="py-string">"zlib module is not available"</tt><tt class="py-op">)</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">zlib</tt><tt class="py-op">.</tt><tt class="py-name">decompress</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> </tt>
-<a name="decByteOffet_python"></a><div id="decByteOffet_python-def"><a name="L100"></a><tt class="py-lineno">100</tt> <a class="py-toggle" href="#" id="decByteOffet_python-toggle" onclick="return toggle('decByteOffet_python');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decByteOffet_python">decByteOffet_python</a><tt class="py-op">(</tt><tt class="py-param">stream</tt><tt class="py-op">,</tt> <tt class="py-param">si [...]
-</div><div id="decByteOffet_python-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decByteOffet_python-expanded"><a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"><tt class="py-docstring"> Analyze a stream of char with any length of exception (2,4, or 8 bytes integers)</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"><tt class="py-docstring"> @param stream: string representing the compressed data</tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"><tt class="py-docstring"> @param size: the size of the output array (of longInts)</tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"><tt class="py-docstring"> @return :NParrays </tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt id="link-16" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-16', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"CBF decompression using Python with Cython loops"</tt><tt class="py-op">)</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-name">dataOut</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">size</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int64</tt><tt class=" [...]
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt id="link-17" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-17', 'i', 'link-10');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">j</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt id="link-18" class="py-name" targets="Method fabio.file_series.file_series.last()=fabio.file_series.file_series-class.html#last"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-18', 'last', 'link-18');">last</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt id="link-19" class="py-name" targets="Method fabio.file_series.file_series.current()=fabio.file_series.file_series-class.html#current,Method fabio.file_series.filename_series.current()=fabio.file_series.filename_series-class.html#current"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-19', 'current', 'link-19');">current</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt id="link-20" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-20', 'i', 'link-10');">i</a></tt> <tt class="py-op"><</tt> <tt id="link-21" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-21', 'len', 'link-8'); [...]
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">[</tt><tt id="link-22" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-22', 'i', 'link-10');">i</a></tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'\x80'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">[</tt><tt id="link-23" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-23', 'i', 'link-10');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt id="link-24" class="py-name"><a title="fabio.fabioutils.i" class=" [...]
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">[</tt><tt id="link-25" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-25', 'i', 'link-10');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt><tt id="link-26" class="py-name"><a title="fabio.fabioutils.i" cla [...]
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt id="link-27" class="py-name"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-27', 'current', 'link-19');">current</a></tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name" targets="Method fabio.edfimage.edfimage.unpack()=fabio.edfimage.edfimage-class.html#unpack,Method fabio.tifimage.Image_File_Directory.unpack()=fabio.tifimage.Image_File_Directory-class.html#unpack,Method fabio.tifimage.Image_File_Direc [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-28', 'unpack', 'link-28');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-string">"<q"</tt><tt class="py-op">,</tt> <tt class="py-name">stream</tt><tt class="py-op">[</tt><tt id="link-29" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-29', 'i', 'link-10');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">7</tt>< [...]
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt id="link-31" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-31', 'i', 'link-10');">i</a></tt> <tt class="py-op">+=</tt> <tt class="py-number">15</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt id="link-32" class="py-name"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-32', 'current', 'link-19');">current</a></tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-33', 'unpack', 'link-28');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-string">"<i"</tt><tt class="py-op">,</tt> <tt class="py-name">stream</tt><tt class="py-op">[</tt><tt id="link-34" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-34', 'i', 'link-10');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">3</tt>< [...]
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt id="link-36" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-36', 'i', 'link-10');">i</a></tt> <tt class="py-op">+=</tt> <tt class="py-number">7</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt id="link-37" class="py-name"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-37', 'current', 'link-19');">current</a></tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-38', 'unpack', 'link-28');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-string">"<h"</tt><tt class="py-op">,</tt> <tt class="py-name">stream</tt><tt class="py-op">[</tt><tt id="link-39" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-39', 'i', 'link-10');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt>< [...]
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt id="link-41" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-41', 'i', 'link-10');">i</a></tt> <tt class="py-op">+=</tt> <tt class="py-number">3</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt id="link-42" class="py-name"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-42', 'current', 'link-19');">current</a></tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-43', 'unpack', 'link-28');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-string">"<b"</tt><tt class="py-op">,</tt> <tt class="py-name">stream</tt><tt class="py-op">[</tt><tt id="link-44" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-44', 'i', 'link-10');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt cla [...]
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt id="link-45" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-45', 'i', 'link-10');">i</a></tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt id="link-46" class="py-name"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-46', 'last', 'link-18');">last</a></tt> <tt class="py-op">+=</tt> <tt id="link-47" class="py-name"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-47', 'current', 'link-19');">current</a></tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-name">dataOut</tt><tt class="py-op">[</tt><tt class="py-name">j</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-48" class="py-name"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-48', 'last', 'link-18');">last</a></tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-name">j</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">dataOut</tt> </tt>
-</div><a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> </tt>
-<a name="decByteOffet_weave"></a><div id="decByteOffet_weave-def"><a name="L133"></a><tt class="py-lineno">133</tt> <a class="py-toggle" href="#" id="decByteOffet_weave-toggle" onclick="return toggle('decByteOffet_weave');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decByteOffet_weave">decByteOffet_weave</a><tt class="py-op">(</tt><tt class="py-param">stream</tt><tt class="py-op">,</tt> <tt class="py-param">size</tt [...]
-</div><div id="decByteOffet_weave-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decByteOffet_weave-expanded"><a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"><tt class="py-docstring"> Analyze a stream of char with any length of exception (2,4, or 8 bytes integers)</tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"><tt class="py-docstring"> @return list of NParrays</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt id="link-49" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-49', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"CBF decompression using Weave"</tt><tt class="py-op">)</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-keyword">from</tt> <tt class="py-name">scipy</tt> <tt class="py-keyword">import</tt> <tt class="py-name">weave</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-keyword">from</tt> <tt class="py-name">scipy</tt><tt class="py-op">.</tt><tt class="py-name">weave</tt> <tt class="py-keyword">import</tt> <tt id="link-50" class="py-name" targets="Module fabio.converters=fabio.converters-module.html"><a title="fabio.converters" class="py-name" href="#" onclick="return doclink('link-50', 'converters', 'link-50');">converters</a></tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-name">dataIn</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"uint8"</tt><tt class="py-op">)</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">dataIn</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-name">dataOut</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-name">size</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"int64"</tt><tt class="py-op">)</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-name">codeC</tt> <tt class="py-op">=</tt> <tt class="py-string">"""</tt> </tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"><tt class="py-string">unsigned char key = 0x80;</tt> </tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"><tt class="py-string">long j = 0;</tt> </tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"><tt class="py-string">long last=0;</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"><tt class="py-string">long current=0;</tt> </tt>
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"><tt class="py-string">for (int i=0; i< n; i++){</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"><tt class="py-string"> if (j>=size){</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"><tt class="py-string"> //printf("i= %i<%i, j=%i < size= %i %i\\n",i,n,j,size,dataIn(i));</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"><tt class="py-string"> break;</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"><tt class="py-string"> }</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"><tt class="py-string"> if (dataIn(i) == key){</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"><tt class="py-string"> if ( (dataIn(i+1)==0) and (dataIn(i+2)==key) ){</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"><tt class="py-string"> if ( (dataIn(i+3)==0) and (dataIn(i+4)==0) and (dataIn(i+5)==0) and (dataIn(i+6)==key) ) {</tt> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"><tt class="py-string"> // 64 bits mode</tt> </tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"><tt class="py-string"> char tmp = dataIn(i+14) ;</tt> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"><tt class="py-string"> current = (long(tmp)<<56) | (long(dataIn(i+13))<<48) | (long(dataIn(i+12))<<40) | (long(dataIn(i+11))<<32) | (long(dataIn(i+10))<<24) | (long(dataIn(i+9))<<16) | (long(dataIn(i+8))<<8) | (long(dataIn(i+7)));</tt> </tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"><tt class="py-string">// printf("64 bit int at pos %i, %i, value=%ld \\n",i,j,current);</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"><tt class="py-string"> i+=14;</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"><tt class="py-string"> }else{</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"><tt class="py-string"> // 32 bits mode</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"><tt class="py-string"> char tmp = dataIn(i+6) ;</tt> </tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"><tt class="py-string"> current = (long(tmp)<<24) | (long(dataIn(i+5))<<16) | (long(dataIn(i+4))<<8) | (long(dataIn(i+3)));</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"><tt class="py-string">// printf("32 bit int at pos %i, %i, value=%ld was %i %i %i %i %i %i %i\\n",i,j,current,dataIn(i),dataIn(i+1),dataIn(i+2),dataIn(i+3),dataIn(i+4),dataIn(i+5),dataIn(i+6));</tt> </tt>
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"><tt class="py-string">// printf("%ld %ld %ld %ld\\n",(long(tmp)<<24) , (long(dataIn(i+5))<<16) , (long(dataIn(i+4))<<8) ,long(dataIn(i+3)));</tt> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"><tt class="py-string"> i+=6;</tt> </tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"><tt class="py-string"> }</tt> </tt>
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"><tt class="py-string"> }else{</tt> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"><tt class="py-string"> // 16 bit mode</tt> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"><tt class="py-string"> char tmp = dataIn(i+2);</tt> </tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"><tt class="py-string"> current = (long(tmp)<<8) | (long (dataIn(i+1)));</tt> </tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"><tt class="py-string">// printf("16 bit int at pos %i, %i, value=%ld was %i %i %i\\n",i,j,current,dataIn(i),dataIn(i+1),dataIn(i+2));</tt> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"><tt class="py-string"> i+=2;</tt> </tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"><tt class="py-string"> }</tt> </tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"><tt class="py-string"> }else{</tt> </tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"><tt class="py-string"> // 8 bit mode</tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"><tt class="py-string"> char tmp = dataIn(i) ;</tt> </tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"><tt class="py-string"> current= long(tmp) ;</tt> </tt>
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"><tt class="py-string"> }</tt> </tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"><tt class="py-string"> last+=current;</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"><tt class="py-string"> dataOut(j)=last;</tt> </tt>
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"><tt class="py-string"> j++ ;</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"><tt class="py-string">}</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"><tt class="py-string">return_val=0;</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"><tt class="py-string"> """</tt> </tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-name">rc</tt> <tt class="py-op">=</tt> <tt class="py-name">weave</tt><tt class="py-op">.</tt><tt class="py-name">inline</tt><tt class="py-op">(</tt><tt class="py-name">codeC</tt><tt class="py-op">,</tt> <tt class="py-op">[</tt><tt class="py-string">"dataIn"</tt><tt class="py-op">,</tt> <tt class="py-string">"dataOut"</tt><tt class="py-op">,</tt> <tt class="py-string">"n"</tt><tt class="py-op">,</tt> [...]
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">rc</tt> <tt class="py-op">!=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt id="link-52" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-52', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"weave binary module return error code %s"</tt> <tt class="py-op">%</tt> <tt class="py-name">rc</tt><tt class="py-op">)</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">dataOut</tt> </tt>
-</div><a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> </tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> </tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> </tt>
-<a name="decByteOffet_numpy"></a><div id="decByteOffet_numpy-def"><a name="L196"></a><tt class="py-lineno">196</tt> <a class="py-toggle" href="#" id="decByteOffet_numpy-toggle" onclick="return toggle('decByteOffet_numpy');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decByteOffet_numpy">decByteOffet_numpy</a><tt class="py-op">(</tt><tt class="py-param">stream</tt><tt class="py-op">,</tt> <tt class="py-param">size</tt [...]
-</div><div id="decByteOffet_numpy-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decByteOffet_numpy-expanded"><a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"><tt class="py-docstring"> Analyze a stream of char with any length of exception: </tt> </tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"><tt class="py-docstring"> 2, 4, or 8 bytes integers</tt> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"><tt class="py-docstring"> @return list of NParrays</tt> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt id="link-53" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-53', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"CBF decompression using Numpy"</tt><tt class="py-op">)</tt> </tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-name">listnpa</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-name">key16</tt> <tt class="py-op">=</tt> <tt class="py-string">"\x80"</tt> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-name">key32</tt> <tt class="py-op">=</tt> <tt class="py-string">"\x00\x80"</tt> </tt>
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-name">key64</tt> <tt class="py-op">=</tt> <tt class="py-string">"\x00\x00\x00\x80"</tt> </tt>
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-name">shift</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">True</tt><tt class="py-op">:</tt> </tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-name">idx</tt> <tt class="py-op">=</tt> <tt class="py-name">stream</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-name">key16</tt><tt class="py-op">)</tt> </tt>
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">idx</tt> <tt class="py-op">==</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-name">listnpa</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"int8"</tt><tt class="py-op">)</tt><tt class="py-op"> [...]
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-name">listnpa</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt [...]
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> </tt>
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">stream</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">3</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-name">key32</tt><tt class="py-op">:</tt> </tt>
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">stream</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">7</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-name">key64</tt><tt class="py-op">:</tt> </tt>
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"><tt class="py-comment"># long int 64 bits</tt> </tt>
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-name">listnpa</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">7</tt><tt class="py-op">:</tt><tt class="py-name"> [...]
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"int64"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-name">shift</tt> <tt class="py-op">=</tt> <tt class="py-number">15</tt> </tt>
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-comment">#32 bit int</tt> </tt>
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-name">listnpa</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt><tt class="py-name"> [...]
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"int32"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> <tt class="py-name">shift</tt> <tt class="py-op">=</tt> <tt class="py-number">7</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-comment">#int16 </tt> </tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-name">listnpa</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-name">idx< [...]
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"int16"</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-name">shift</tt> <tt class="py-op">=</tt> <tt class="py-number">3</tt> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-name">stream</tt> <tt class="py-op">=</tt> <tt class="py-name">stream</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt> <tt class="py-op">+</tt> <tt class="py-name">shift</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">hstack</tt><tt class="py-op">(</tt><tt class="py-name">listnpa</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int64"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt cla [...]
-</div><a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> </tt>
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> </tt>
-<a name="decByteOffet_cython"></a><div id="decByteOffet_cython-def"><a name="L234"></a><tt class="py-lineno">234</tt> <a class="py-toggle" href="#" id="decByteOffet_cython-toggle" onclick="return toggle('decByteOffet_cython');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decByteOffet_cython">decByteOffet_cython</a><tt class="py-op">(</tt><tt class="py-param">stream</tt><tt class="py-op">,</tt> <tt class="py-param">si [...]
-</div><div id="decByteOffet_cython-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decByteOffet_cython-expanded"><a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"><tt class="py-docstring"> Analyze a stream of char with any length of exception: </tt> </tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"><tt class="py-docstring"> 2, 4, or 8 bytes integers</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"><tt class="py-docstring"> @return list of NParrays</tt> </tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt id="link-54" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-54', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"CBF decompression using cython"</tt><tt class="py-op">)</tt> </tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt class="py-keyword">from</tt> <tt id="link-55" class="py-name" targets="Package fabio=fabio-module.html"><a title="fabio" class="py-name" href="#" onclick="return doclink('link-55', 'fabio', 'link-55');">fabio</a></tt><tt class="py-op">.</tt><tt id="link-56" class="py-name" targets="Module fabio.byte_offset=fabio.byte_offset-module.html"><a title="fabio.byte_offset" class="py-name" href="#" onclick="return [...]
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt id="link-57" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-57', 'logger', 'link-1');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Failed to import byte_offset cython module, falling back on numpy method"</tt><tt class="py-op">)</tt> </tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-58" class="py-name" targets="Function fabio.compression.decByteOffet_numpy()=fabio.compression-module.html#decByteOffet_numpy"><a title="fabio.compression.decByteOffet_numpy" class="py-name" href="#" onclick="return doclink('link-58', 'decByteOffet_numpy', 'link-58');">decByteOffet_numpy</a></tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py [...]
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">analyseCython</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">,</tt> <tt class="py-name">size</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> </tt>
-<a name="compByteOffet_numpy"></a><div id="compByteOffet_numpy-def"><a name="L250"></a><tt class="py-lineno">250</tt> <a class="py-toggle" href="#" id="compByteOffet_numpy-toggle" onclick="return toggle('compByteOffet_numpy');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#compByteOffet_numpy">compByteOffet_numpy</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="compByteOffet_numpy-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="compByteOffet_numpy-expanded"><a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"><tt class="py-docstring"> Compress a dataset into a string using the byte_offet algorithm</tt> </tt>
-<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"><tt class="py-docstring"> @param data: ndarray</tt> </tt>
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"><tt class="py-docstring"> @return: string/bytes with compressed data</tt> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"><tt class="py-docstring"> test = numpy.array([0,1,2,127,0,1,2,128,0,1,2,32767,0,1,2,32768,0,1,2,2147483647,0,1,2,2147483648,0,1,2,128,129,130,32767,32768,128,129,130,32768,2147483647,2147483648])</tt> </tt>
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-name">flat</tt> <tt class="py-op">=</tt> <tt id="link-59" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-59', 'data', 'link-59');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int64"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">ravel</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-name">delta</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros_like</tt><tt class="py-op">(</tt><tt class="py-name">flat</tt><tt class="py-op">)</tt> </tt>
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">flat</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">flat</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">-</tt> <tt class="py-name">flat</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt c [...]
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-name">mask</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">delta</tt> <tt class="py-op">></tt> <tt class="py-number">127</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-name">delta</tt> <tt class="py-op"><</tt> <tt class="py-op">-</tt><tt class="py-number">127</tt><tt class="py-op">)</tt><tt class="py- [...]
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-name">exceptions</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">nonzero</tt><tt class="py-op">(</tt><tt class="py-name">mask</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">little_endian</tt><tt class="py-op">:</tt> </tt>
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">byteswap</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-name">byteswap</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">stop</tt> <tt class="py-keyword">in</tt> <tt class="py-name">exceptions</tt><tt class="py-op">:</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">stop</tt> <tt class="py-op">-</tt> <tt class="py-name">start</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">start</tt><tt class="py-op">:</tt><tt class="py-name">stop</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int8"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-60" class="p [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-60', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt class="py-name">exc</tt> <tt class="py-op">=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">stop</tt><tt class="py-op">]</tt> </tt>
-<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">exc</tt> <tt class="py-op">></tt> <tt class="py-number">2147483647</tt><tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt class="py-op">(</tt><tt class="py-name">exc</tt> <tt class="py-op"><</tt> <tt class="py-op">-</tt><tt class="py-number">2147483647</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-com [...]
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-string">"\x80\x00\x80\x00\x00\x00\x80"</tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">byteswap</tt><tt class="py-op">:</tt> </tt>
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">stop</tt><tt class="py-op">:</tt><tt class="py-name">stop</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-61', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">stop</tt><tt class="py-op">:</tt><tt class="py-name">stop</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-62', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt class="py-name">exc</tt> <tt class="py-op">></tt> <tt class="py-number">32767</tt><tt class="py-op">)</tt> <tt class="py-keyword">or</tt> <tt class="py-op">(</tt><tt class="py-name">exc</tt> <tt class="py-op"><</tt> <tt class="py-op">-</tt><tt class="py-number">32767</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-comment">#2 [...]
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-string">"\x80\x00\x80"</tt> </tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">byteswap</tt><tt class="py-op">:</tt> </tt>
-<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">stop</tt><tt class="py-op">:</tt><tt class="py-name">stop</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int32"</tt><tt class="py-o [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-63', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">stop</tt><tt class="py-op">:</tt><tt class="py-name">stop</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int32"</tt><tt class="py-o [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-64', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-comment">#>127</tt> </tt>
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-string">"\x80"</tt> </tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">byteswap</tt><tt class="py-op">:</tt> </tt>
-<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">stop</tt><tt class="py-op">:</tt><tt class="py-name">stop</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int16"</tt><tt class="py-o [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-65', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">stop</tt><tt class="py-op">:</tt><tt class="py-name">stop</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int16"</tt><tt class="py-o [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-66', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-name">stop</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
-<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">start</tt> <tt class="py-op"><</tt> <tt class="py-name">delta</tt><tt class="py-op">.</tt><tt class="py-name">size</tt><tt class="py-op">:</tt> </tt>
-<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-name">binary_blob</tt> <tt class="py-op">+=</tt> <tt class="py-name">delta</tt><tt class="py-op">[</tt><tt class="py-name">start</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int8"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.cbfimage. [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-67', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">binary_blob</tt> </tt>
-</div><a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> </tt>
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> </tt>
-<a name="decTY1"></a><div id="decTY1-def"><a name="L300"></a><tt class="py-lineno">300</tt> <a class="py-toggle" href="#" id="decTY1-toggle" onclick="return toggle('decTY1');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decTY1">decTY1</a><tt class="py-op">(</tt><tt class="py-param">raw_8</tt><tt class="py-op">,</tt> <tt class="py-param">raw_16</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op" [...]
-</div><div id="decTY1-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decTY1-expanded"><a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"><tt class="py-docstring"> Modified byte offset decompressor used in Oxford Diffraction images</tt> </tt>
-<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"><tt class="py-docstring"> @param raw_8,raw_16,raw_32: strings containing raw data with integer of the given size</tt> </tt>
-<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"><tt class="py-docstring"> @return numpy.ndarray </tt> </tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> <tt id="link-68" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-68', 'data', 'link-59');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">raw_8</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"uint8"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt cla [...]
-<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt id="link-69" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-69', 'data', 'link-59');">data</a></tt> <tt class="py-op">-=</tt> <tt class="py-number">127</tt> </tt>
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">raw_32</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-name">int32</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">raw_32</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"int32"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</ [...]
-<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt class="py-name">exception32</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">nonzero</tt><tt class="py-op">(</tt><tt id="link-70" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-70', 'data', 'link-59');">data</a></tt> <tt class="py-op">==</tt> <tt class="py-number">128</tt><tt class="py-op">)</tt> </tt>
-<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">raw_16</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt class="py-name">int16</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">raw_16</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"int16"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</ [...]
-<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt class="py-name">exception16</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">nonzero</tt><tt class="py-op">(</tt><tt id="link-71" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-71', 'data', 'link-59');">data</a></tt> <tt class="py-op">==</tt> <tt class="py-number">127</tt><tt class="py-op">)</tt> </tt>
-<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt id="link-72" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-72', 'data', 'link-59');">data</a></tt><tt class="py-op">[</tt><tt class="py-name">exception16</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int16</tt> </tt>
-<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">raw_32</tt><tt class="py-op">:</tt> </tt>
-<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt id="link-73" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-73', 'data', 'link-59');">data</a></tt><tt class="py-op">[</tt><tt class="py-name">exception32</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int32</tt> </tt>
-<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> <tt class="py-name">summed</tt> <tt class="py-op">=</tt> <tt id="link-74" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-74', 'data', 'link-59');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">cumsum</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> <tt class="py-name">smax</tt> <tt class="py-op">=</tt> <tt class="py-name">summed</tt><tt class="py-op">.</tt><tt class="py-name">max</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">smax</tt> <tt class="py-op">></tt> <tt class="py-op">(</tt><tt class="py-number">2</tt> <tt class="py-op">**</tt> <tt class="py-number">31</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> <tt id="link-75" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-75', 'bytecode', 'link-75');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"int64"</tt> </tt>
-<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt class="py-name">smax</tt> <tt class="py-op">></tt> <tt class="py-op">(</tt><tt class="py-number">2</tt> <tt class="py-op">**</tt> <tt class="py-number">15</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt id="link-76" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-76', 'bytecode', 'link-75');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"int32"</tt> </tt>
-<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt class="py-name">smax</tt> <tt class="py-op">></tt> <tt class="py-op">(</tt><tt class="py-number">2</tt> <tt class="py-op">**</tt> <tt class="py-number">7</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt id="link-77" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-77', 'bytecode', 'link-75');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"int16"</tt> </tt>
-<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> <tt id="link-78" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-78', 'bytecode', 'link-75');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"int8"</tt> </tt>
-<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">summed</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt id="link-79" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-79', 'bytecode', 'link-75');">bytecode</a></tt><tt class="py-op">)</tt> </tt>
-</div><a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"><tt class="py-name">decKM4CCD</tt> <tt class="py-op">=</tt> <tt id="link-80" class="py-name" targets="Function fabio.compression.decTY1()=fabio.compression-module.html#decTY1"><a title="fabio.compression.decTY1" class="py-name" href="#" onclick="return doclink('link-80', 'decTY1', 'link-80');">decTY1</a></tt> </tt>
-<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> </tt>
-<a name="compTY1"></a><div id="compTY1-def"><a name="L330"></a><tt class="py-lineno">330</tt> <a class="py-toggle" href="#" id="compTY1-toggle" onclick="return toggle('compTY1');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#compTY1">compTY1</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="compTY1-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="compTY1-expanded"><a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"><tt class="py-docstring"> Modified byte offset compressor used in Oxford Diffraction images</tt> </tt>
-<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"><tt class="py-docstring"> @param data numpy.ndarray</tt> </tt>
-<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"><tt class="py-docstring"> @return raw_8,raw_16,raw_32: strings containing raw data with integer of the given size </tt> </tt>
-<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> <tt class="py-name">fdata</tt> <tt class="py-op">=</tt> <tt id="link-81" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-81', 'data', 'link-59');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">flatten</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"> <tt class="py-name">diff</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros_like</tt><tt class="py-op">(</tt><tt class="py-name">fdata</tt><tt class="py-op">)</tt> </tt>
-<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> <tt class="py-name">diff</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">fdata</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> <tt class="py-name">diff</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">fdata</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">-</tt> <tt class="py-name">fdata</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt [...]
-<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> <tt class="py-name">adiff</tt> <tt class="py-op">=</tt> <tt class="py-name">abs</tt><tt class="py-op">(</tt><tt class="py-name">diff</tt><tt class="py-op">)</tt> </tt>
-<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> <tt class="py-name">exception32</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">adiff</tt> <tt class="py-op">></tt> <tt class="py-number">32767</tt><tt class="py-op">)</tt><tt class="py-comment">#2**15-1</tt> </tt>
-<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"> <tt class="py-name">exception16</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">adiff</tt> <tt class="py-op">>=</tt> <tt class="py-number">127</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-name">exception32</tt> <tt class="py-comment">#2**7-1)</tt> </tt>
-<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> <tt class="py-name">we16</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">where</tt><tt class="py-op">(</tt><tt class="py-name">exception16</tt><tt class="py-op">)</tt> </tt>
-<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"> <tt class="py-name">we32</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">where</tt><tt class="py-op">(</tt><tt class="py-name">exception32</tt><tt class="py-op">)</tt> </tt>
-<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> <tt class="py-name">raw_16</tt> <tt class="py-op">=</tt> <tt class="py-name">diff</tt><tt class="py-op">[</tt><tt class="py-name">we16</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int16"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-82', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"> <tt class="py-name">raw_32</tt> <tt class="py-op">=</tt> <tt class="py-name">diff</tt><tt class="py-op">[</tt><tt class="py-name">we32</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"int32"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-83', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"> <tt class="py-name">diff</tt><tt class="py-op">[</tt><tt class="py-name">we16</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-number">127</tt> </tt>
-<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"> <tt class="py-name">diff</tt><tt class="py-op">[</tt><tt class="py-name">we32</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-number">128</tt> </tt>
-<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"> <tt class="py-name">diff</tt> <tt class="py-op">+=</tt> <tt class="py-number">127</tt> </tt>
-<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> <tt class="py-name">raw_8</tt> <tt class="py-op">=</tt> <tt class="py-name">diff</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"uint8"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-84', 'tostring', 'link-60');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">raw_8</tt><tt class="py-op">,</tt> <tt class="py-name">raw_16</tt><tt class="py-op">,</tt> <tt class="py-name">raw_32</tt> </tt>
-</div><a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"> </tt>
-<a name="decPCK"></a><div id="decPCK-def"><a name="L354"></a><tt class="py-lineno">354</tt> <a class="py-toggle" href="#" id="decPCK-toggle" onclick="return toggle('decPCK');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#decPCK">decPCK</a><tt class="py-op">(</tt><tt class="py-param">stream</tt><tt class="py-op">,</tt> <tt class="py-param">dim1</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op"> [...]
-</div><div id="decPCK-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="decPCK-expanded"><a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"><tt class="py-docstring"> Modified CCP4 pck decompressor used in MAR345 images</tt> </tt>
-<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"><tt class="py-docstring"> @param stream: string or file </tt> </tt>
-<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"><tt class="py-docstring"> @return numpy.ndarray (square array) </tt> </tt>
-<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"> </tt>
-<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"> <tt class="py-keyword">from</tt> <tt id="link-85" class="py-name" targets="Module fabio.mar345_IO=fabio.mar345_IO-module.html"><a title="fabio.mar345_IO" class="py-name" href="#" onclick="return doclink('link-85', 'mar345_IO', 'link-85');">mar345_IO</a></tt> <tt class="py-keyword">import</tt> <tt class="py-name">uncompress_pck</tt> </tt>
-<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to import mar345_IO to read compressed dataset"</tt><tt class="py-op">)</tt> </tt>
-<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"seek"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">dir</tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"> <tt class="py-name">stream</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"> <tt class="py-name">raw</tt> <tt class="py-op">=</tt> <tt class="py-name">stream</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-86', 'read', 'link-5');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> <tt class="py-name">raw</tt> <tt class="py-op">=</tt> <tt id="link-87" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-87', 'str', 'link-0');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">stream</tt><tt class="py-op">)</tt> </tt>
-<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"> </tt>
-<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">uncompress_pck</tt><tt class="py-op">(</tt><tt class="py-name">raw</tt><tt class="py-op">,</tt> <tt id="link-88" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-88', 'dim1', 'link-88');">dim1</a></tt><tt class=" [...]
-</div><a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> </tt>
-<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> </tt>
-<a name="compPCK"></a><div id="compPCK-def"><a name="L375"></a><tt class="py-lineno">375</tt> <a class="py-toggle" href="#" id="compPCK-toggle" onclick="return toggle('compPCK');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.compression-module.html#compPCK">compPCK</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="compPCK-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="compPCK-expanded"><a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"><tt class="py-docstring"> Modified CCP4 pck compressor used in MAR345 images</tt> </tt>
-<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"><tt class="py-docstring"> @param data numpy.ndarray (square array)</tt> </tt>
-<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"><tt class="py-docstring"> @return compressed stream </tt> </tt>
-<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"> <tt class="py-keyword">from</tt> <tt id="link-90" class="py-name"><a title="fabio.mar345_IO" class="py-name" href="#" onclick="return doclink('link-90', 'mar345_IO', 'link-85');">mar345_IO</a></tt> <tt class="py-keyword">import</tt> <tt class="py-name">compress_pck</tt> </tt>
-<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to import mar345_IO to write compressed dataset"</tt><tt class="py-op">)</tt> </tt>
-<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">compress_pck</tt><tt class="py-op">(</tt><tt id="link-91" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-91', 'data', 'link-59');">data</a></tt><tt class="py-op">)</tt> </tt>
-</div><a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
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- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.converters-module.html b/doc/html/fabio.converters-module.html
deleted file mode 100644
index 94481b3..0000000
--- a/doc/html/fabio.converters-module.html
+++ /dev/null
@@ -1,375 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.converters</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module converters
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.converters-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module converters</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.converters-pysrc.html">source code</a></span></p>
-<p>Converter module. This is for the moment empty (populated only with
- almost pass through anonymous functions) but aims to be populated with
- more sofisticated translators ...</p>
-
-<hr />
-<div class="fields"> <p><strong>Author:</strong>
- J\xc3\xa9r\xc3\xb4me Kieffer
- </p>
- <p><strong>Contact:</strong>
- jerome.kieffer at esrf.eu
- </p>
- <p><strong>Copyright:</strong>
- European Synchrotron Radiation Facility, Grenoble, France
- </p>
- <p><strong>License:</strong>
- GPLv3+
- </p>
-</div><!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Functions</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="convert_data_integer"></a><span class="summary-sig-name">convert_data_integer</span>(<span class="summary-sig-arg">data</span>)</span><br />
- convert data to integer</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.converters-pysrc.html#convert_data_integer">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.converters-module.html#convert_data" class="summary-sig-name">convert_data</a>(<span class="summary-sig-arg">inp</span>,
- <span class="summary-sig-arg">outp</span>,
- <span class="summary-sig-arg">data</span>)</span><br />
- Return data converted to the output format ...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.converters-pysrc.html#convert_data">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.converters-module.html#convert_header" class="summary-sig-name">convert_header</a>(<span class="summary-sig-arg">inp</span>,
- <span class="summary-sig-arg">outp</span>,
- <span class="summary-sig-arg">header</span>)</span><br />
- return header converted to the output format</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.converters-pysrc.html#convert_header">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("converter")">logging.getLogger("converter")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.converters-module.html#CONVERSION_HEADER" class="summary-name">CONVERSION_HEADER</a> = <code title="{('edfimage', 'edfimage'): <function <lambda> at 0x1af80c8>}"><code class="variable-group">{</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">edfimage</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string"> [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.converters-module.html#CONVERSION_DATA" class="summary-name">CONVERSION_DATA</a> = <code title="{("edfimage", "edfimage"): lambda data: data, ("edfimage", "cbfimage")\
-: convert_data_integer, ("edfimage", "mar345image"): convert_data_inte\
-ger, ("edfimage", "fit2dmaskimage"): convert_data_integer, ("edfimage"\
-, "kcdimage"): convert_data_integer, ("edfimage", "OXDimage"): convert\
-_data_integer, ("edfimage", "pnmimage"): convert_data_integer,}"><code class="variable-group">{</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">edfimage</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">OXDimage</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-o [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTION DETAILS ==================== -->
-<a name="section-FunctionDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Function Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-FunctionDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="convert_data"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">convert_data</span>(<span class="sig-arg">inp</span>,
- <span class="sig-arg">outp</span>,
- <span class="sig-arg">data</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.converters-pysrc.html#convert_data">source code</a></span>
- </td>
- </tr></table>
-
- <p>Return data converted to the output format ... over-simplistic
- implementation for the moment ...</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>inp</code></strong>, <strong class="pname"><code>outp</code></strong> - input/output format like "cbfimage"</li>
- <li><strong class="pname"><code>data(ndarray)</code></strong> - the actual dataset to be transformed</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="convert_header"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">convert_header</span>(<span class="sig-arg">inp</span>,
- <span class="sig-arg">outp</span>,
- <span class="sig-arg">header</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.converters-pysrc.html#convert_header">source code</a></span>
- </td>
- </tr></table>
-
- <p>return header converted to the output format</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>inp</code></strong>, <strong class="pname"><code>outp</code></strong> - input/output format like "cbfimage"</li>
- <li><strong class="pname"><code>header(dict)</code></strong> - the actual set of headers to be transformed</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="CONVERSION_HEADER"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">CONVERSION_HEADER</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">edfimage</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">edfimage</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">: </code><function <lambda> at 0x1af80c8><code class="variable-group"> [...]
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="CONVERSION_DATA"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">CONVERSION_DATA</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-{("edfimage", "edfimage"): lambda data: data, ("edfimage", "cbfimage")<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-: convert_data_integer, ("edfimage", "mar345image"): convert_data_inte<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-ger, ("edfimage", "fit2dmaskimage"): convert_data_integer, ("edfimage"<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-, "kcdimage"): convert_data_integer, ("edfimage", "OXDimage"): convert<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-_data_integer, ("edfimage", "pnmimage"): convert_data_integer,}
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
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diff --git a/doc/html/fabio.converters-pysrc.html b/doc/html/fabio.converters-pysrc.html
deleted file mode 100644
index 6fc9510..0000000
--- a/doc/html/fabio.converters-pysrc.html
+++ /dev/null
@@ -1,195 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
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- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module converters
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.converters-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.converters-module.html">Module fabio.converters</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python </tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Converter module. </tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">This is for the moment empty (populated only with almost pass through anonymous functions)</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">but aims to be populated with more sofisticated translators ... </tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-name">__author__</tt> <tt class="py-op">=</tt> <tt class="py-string">"Jérôme Kieffer"</tt> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-name">__contact__</tt> <tt class="py-op">=</tt> <tt class="py-string">"jerome.kieffer at esrf.eu"</tt> </tt>
-<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"><tt class="py-name">__license__</tt> <tt class="py-op">=</tt> <tt class="py-string">"GPLv3+"</tt> </tt>
-<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-name">__copyright__</tt> <tt class="py-op">=</tt> <tt class="py-string">"European Synchrotron Radiation Facility, Grenoble, France"</tt> </tt>
-<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> </tt>
-<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">types</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bruk [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"converter"</tt><tt class="py-op">)</tt> </tt>
-<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> </tt>
-<a name="convert_data_integer"></a><div id="convert_data_integer-def"><a name="L17"></a><tt class="py-lineno">17</tt> <a class="py-toggle" href="#" id="convert_data_integer-toggle" onclick="return toggle('convert_data_integer');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.converters-module.html#convert_data_integer">convert_data_integer</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="convert_data_integer-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="convert_data_integer-expanded"><a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"><tt class="py-docstring"> convert data to integer</tt> </tt>
-<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-1" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-1', 'data', 'link-1');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-2" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-2', 'data', 'link-1');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">)</tt> </tt>
-<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-3" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-3', 'data', 'link-1');">data</a></tt> </tt>
-</div><a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> </tt>
-<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> </tt>
-<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable fabio.converters.CONVERSION_HEADER=fabio.converters-module.html#CONVERSION_HEADER"><a title="fabio.converters.CONVERSION_HEADER" class="py-name" href="#" onclick="return doclink('link-4', 'CONVERSION_HEADER', 'link-4');">CONVERSION_HEADER</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">,</tt> <tt class="py-string">"edfimage"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-keyword">lambda</tt> <tt id="link-5" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" oncl [...]
-<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"><tt id="link-7" class="py-name" targets="Variable fabio.converters.CONVERSION_DATA=fabio.converters-module.html#CONVERSION_DATA"><a title="fabio.converters.CONVERSION_DATA" class="py-name" href="#" onclick="return doclink('link-7', 'CONVERSION_DATA', 'link-7');">CONVERSION_DATA</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">,</tt> <tt class="py-string">"edfimage"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-keyword">lambda</tt> <tt id="link-8" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-8', 'data', 'link-1');">data</a></tt><tt class="py-op">:</tt><tt id="link-9" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-9', 'data', 'link-1');">data</a></tt><tt class="py-op">,</tt> </tt>
-<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">,</tt> <tt class="py-string">"cbfimage"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt id="link-10" class="py-name" targets="Function fabio.converters.convert_data_integer()=fabio.converters-module.html#convert_data_integer"><a title="fabio.converters.convert_data_integer" class="py-name" href="#" onclick="return [...]
-<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">,</tt> <tt class="py-string">"mar345image"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt id="link-11" class="py-name"><a title="fabio.converters.convert_data_integer" class="py-name" href="#" onclick="return doclink('link-11', 'convert_data_integer', 'link-10');">convert_data_integer</a></tt><tt class="py-op">,</ [...]
-<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">,</tt> <tt class="py-string">"fit2dmaskimage"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt id="link-12" class="py-name"><a title="fabio.converters.convert_data_integer" class="py-name" href="#" onclick="return doclink('link-12', 'convert_data_integer', 'link-10');">convert_data_integer</a></tt><tt class="py-op"> [...]
-<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">,</tt> <tt class="py-string">"kcdimage"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt id="link-13" class="py-name"><a title="fabio.converters.convert_data_integer" class="py-name" href="#" onclick="return doclink('link-13', 'convert_data_integer', 'link-10');">convert_data_integer</a></tt><tt class="py-op">,</tt> </tt>
-<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">,</tt> <tt class="py-string">"OXDimage"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt id="link-14" class="py-name"><a title="fabio.converters.convert_data_integer" class="py-name" href="#" onclick="return doclink('link-14', 'convert_data_integer', 'link-10');">convert_data_integer</a></tt><tt class="py-op">,</tt> </tt>
-<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">,</tt> <tt class="py-string">"pnmimage"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt id="link-15" class="py-name"><a title="fabio.converters.convert_data_integer" class="py-name" href="#" onclick="return doclink('link-15', 'convert_data_integer', 'link-10');">convert_data_integer</a></tt><tt class="py-op">,</tt> </tt>
-<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"> </tt>
-<a name="convert_data"></a><div id="convert_data-def"><a name="L40"></a><tt class="py-lineno">40</tt> <a class="py-toggle" href="#" id="convert_data-toggle" onclick="return toggle('convert_data');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.converters-module.html#convert_data">convert_data</a><tt class="py-op">(</tt><tt class="py-param">inp</tt><tt class="py-op">,</tt> <tt class="py-param">outp</tt><tt class="py-op">,</tt> <tt class="py-pa [...]
-</div><div id="convert_data-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="convert_data-expanded"><a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"><tt class="py-docstring"> Return data converted to the output format ... over-simplistic implementation for the moment ...</tt> </tt>
-<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"><tt class="py-docstring"> @param inp,outp: input/output format like "cbfimage"</tt> </tt>
-<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"><tt class="py-docstring"> @param data(ndarray): the actual dataset to be transformed</tt> </tt>
-<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-16" class="py-name"><a title="fabio.converters.CONVERSION_DATA" class="py-name" href="#" onclick="return doclink('link-16', 'CONVERSION_DATA', 'link-7');">CONVERSION_DATA</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">inp</tt><tt class="py-op">,</tt> <tt class="py-name">outp</tt><tt class= [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-17', 'data', 'link-1');">data</a></tt><tt class="py-op">:</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-18', 'data', 'link-1');">data</a></tt><tt class="py-op">)</tt><tt class="py-op">(</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-19', 'data', 'link-1');">data</a></tt><tt class="py-op">)</tt> </tt>
-</div><a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"> </tt>
-<a name="convert_header"></a><div id="convert_header-def"><a name="L48"></a><tt class="py-lineno">48</tt> <a class="py-toggle" href="#" id="convert_header-toggle" onclick="return toggle('convert_header');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.converters-module.html#convert_header">convert_header</a><tt class="py-op">(</tt><tt class="py-param">inp</tt><tt class="py-op">,</tt> <tt class="py-param">outp</tt><tt class="py-op">,</tt> <tt [...]
-</div><div id="convert_header-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="convert_header-expanded"><a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"><tt class="py-docstring"> return header converted to the output format</tt> </tt>
-<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"><tt class="py-docstring"> @param inp,outp: input/output format like "cbfimage"</tt> </tt>
-<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"><tt class="py-docstring"> @param header(dict):the actual set of headers to be transformed </tt> </tt>
-<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-20" class="py-name"><a title="fabio.converters.CONVERSION_HEADER" class="py-name" href="#" onclick="return doclink('link-20', 'CONVERSION_HEADER', 'link-4');">CONVERSION_HEADER</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">inp</tt><tt class="py-op">,</tt> <tt class="py-name">outp</tt><tt [...]
-</div><a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
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diff --git a/doc/html/fabio.datIO-module.html b/doc/html/fabio.datIO-module.html
deleted file mode 100644
index 92e5f5d..0000000
--- a/doc/html/fabio.datIO-module.html
+++ /dev/null
@@ -1,179 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
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- <a href="fabio-module.html">Package fabio</a> ::
- Module datIO
- </span>
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- <!-- hide/show private -->
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- target="_top">no frames</a>]</span></td></tr>
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-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module datIO</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.datIO-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
- and Jon Wright, ESRF
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
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- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- </td>
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-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.datIO.fabiodata-class.html" class="summary-name">fabiodata</a><br />
- A common class for dataIO in fable Contains a 2d numpy array for
- keeping data, and two lists (clabels and rlabels) containing labels
- for columns and rows respectively
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.datIO.columnfile-class.html" class="summary-name">columnfile</a><br />
- Concrete fabiodata class
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
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- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="None">None</code><br />
- hash(x)
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.datIO-pysrc.html b/doc/html/fabio.datIO-pysrc.html
deleted file mode 100644
index adcc520..0000000
--- a/doc/html/fabio.datIO-pysrc.html
+++ /dev/null
@@ -1,220 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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- <a href="fabio-module.html">Package fabio</a> ::
- Module datIO
- </span>
- </td>
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- <!-- hide/show private -->
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- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.datIO-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
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-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.datIO-module.html">Module fabio.datIO</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"><tt class="py-docstring"> and Jon Wright, ESRF</tt> </tt>
-<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> </tt>
-<a name="fabiodata"></a><div id="fabiodata-def"><a name="L14"></a><tt class="py-lineno">14</tt> <a class="py-toggle" href="#" id="fabiodata-toggle" onclick="return toggle('fabiodata');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.datIO.fabiodata-class.html">fabiodata</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabiodata-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="fabiodata-expanded"><a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"><tt class="py-docstring"> A common class for dataIO in fable</tt> </tt>
-<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"><tt class="py-docstring"> Contains a 2d numpy array for keeping data, and two lists (clabels and rlabels)</tt> </tt>
-<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"><tt class="py-docstring"> containing labels for columns and rows respectively</tt> </tt>
-<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"> </tt>
-<a name="fabiodata.__init__"></a><div id="fabiodata.__init__-def"><a name="L21"></a><tt class="py-lineno">21</tt> <a class="py-toggle" href="#" id="fabiodata.__init__-toggle" onclick="return toggle('fabiodata.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.datIO.fabiodata-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">data</tt><tt class="py-op [...]
-</div><div id="fabiodata.__init__-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="fabiodata.__init__-expanded"><a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"><tt class="py-docstring"> set up initial values</tt> </tt>
-<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt id="link-0" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-0', 'data', 'link-0');">data</a></tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-string">"string"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"fabioimage.__init__ bad argument - "</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt class="py-string">"data should be numpy array"</tt><tt class="py-op">)</tt> </tt>
-<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-1" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-1', 'data', 'link-0');">data</a></tt> <tt class="py-op">=</tt> <tt id="link-2" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-2', 'data', 'link-0');">data</a></tt> </tt>
-<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-3" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-3', 'data', 'link-0');">data</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Variable fabio.edfimage.edfimage.dims=fabio.edfimage.edfimage-class.html#dims"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-4', 'dims', 'link-4');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-5" class="py-n [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-5', 'data', 'link-0');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">clabels</tt> <tt class="py-op">=</tt> <tt class="py-name">clabels</tt> </tt>
-<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rlabels</tt> <tt class="py-op">=</tt> <tt class="py-name">rlabels</tt> </tt>
-<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDimage.read()=fabio.OXDimage.OXDimage-class.html#re [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-6', 'read', 'link-6');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> </tt>
-<a name="fabiodata.read"></a><div id="fabiodata.read-def"><a name="L36"></a><tt class="py-lineno">36</tt> <a class="py-toggle" href="#" id="fabiodata.read-toggle" onclick="return toggle('fabiodata.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.datIO.fabiodata-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">=</tt><tt class="py-n [...]
-</div><div id="fabiodata.read-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="fabiodata.read-expanded"><a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"><tt class="py-docstring"> To be overridden by format specific subclasses</tt> </tt>
-<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Class has not implemented read method yet"</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> </tt>
-<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"><tt class="py-comment">#import stuff from Jon's columnfile things</tt> </tt>
-<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> </tt>
-<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> </tt>
-<a name="columnfile"></a><div id="columnfile-def"><a name="L45"></a><tt class="py-lineno">45</tt> <a class="py-toggle" href="#" id="columnfile-toggle" onclick="return toggle('columnfile');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.datIO.columnfile-class.html">columnfile</a><tt class="py-op">(</tt><tt class="py-base-class">fabiodata</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="columnfile-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="columnfile-expanded"><a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> <tt class="py-docstring">"Concrete fabiodata class"</tt> </tt>
-<a name="columnfile.read"></a><div id="columnfile.read-def"><a name="L47"></a><tt class="py-lineno">47</tt> <a class="py-toggle" href="#" id="columnfile.read-toggle" onclick="return toggle('columnfile.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.datIO.columnfile-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class [...]
-</div><div id="columnfile.read-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="columnfile.read-expanded"><a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt id="link-7" class="py-name" targets="Module fabio.cf_io=fabio.cf_io-module.html"><a title="fabio.cf_io" class="py-name" href="#" onclick="return doclink('link-7', 'cf_io', 'link-7');">cf_io</a></tt> </tt>
-<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-string">'rb'</tt><tt class="py-op">)</tt> </tt>
-<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"columnfile: file"</tt> <tt class="py-op">+</tt> <tt id="link-8" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-8', 'str', 'link-8');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"not found."</tt><tt class="py-op">)</tt> </tt>
-<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-9', 'data', 'link-0');">data</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">clabels</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt id="link-10" class="py-name"><a title="fabio.cf_io" class="py-name" href="#" onclick="return doclink('link-10', 'cf_io', 'link-7');">cf_io</a></tt><tt class="py-op">.</tt><tt id="link-11" class="py-name"><a [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-11', 'read', 'link-6');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"columnfile: read error, file "</tt> <tt class="py-op">+</tt> <tt id="link-12" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-12', 'str', 'link-8');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">" possibly corrupt"</tt><tt class="py-op">)</tt> </tt>
-<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-13', 'dims', 'link-4');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-14', 'data', 'link-0');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
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- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.datIO.columnfile-class.html b/doc/html/fabio.datIO.columnfile-class.html
deleted file mode 100644
index f3a508b..0000000
--- a/doc/html/fabio.datIO.columnfile-class.html
+++ /dev/null
@@ -1,243 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.datIO.columnfile</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.datIO-module.html">Module datIO</a> ::
- Class columnfile
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.datIO.columnfile-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class columnfile</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.datIO-pysrc.html#columnfile">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <a href="fabio.datIO.fabiodata-class.html">fabiodata</a> --+
- |
- <strong class="uidshort">columnfile</strong>
-</pre>
-
-<hr />
-<p>Concrete fabiodata class</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.datIO.columnfile-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- To be overridden by format specific subclasses</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.datIO-pysrc.html#columnfile.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.datIO.fabiodata-class.html">fabiodata</a></code></b>:
- <code><a href="fabio.datIO.fabiodata-class.html#__init__">__init__</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.datIO-pysrc.html#columnfile.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>To be overridden by format specific subclasses</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.datIO.fabiodata-class.html#read">fabiodata.read</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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- <!--
- // Private objects are initially displayed (because if
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.datIO.fabiodata-class.html b/doc/html/fabio.datIO.fabiodata-class.html
deleted file mode 100644
index b86bc04..0000000
--- a/doc/html/fabio.datIO.fabiodata-class.html
+++ /dev/null
@@ -1,269 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.datIO.fabiodata</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.datIO-module.html">Module datIO</a> ::
- Class fabiodata
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.datIO.fabiodata-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class fabiodata</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.datIO-pysrc.html#fabiodata">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <strong class="uidshort">fabiodata</strong>
-</pre>
-
-<dl><dt>Known Subclasses:</dt>
-<dd>
- <ul class="subclass-list">
-<li><a href="fabio.datIO.columnfile-class.html">columnfile</a></li> </ul>
-</dd></dl>
-
-<hr />
-<p>A common class for dataIO in fable Contains a 2d numpy array for
- keeping data, and two lists (clabels and rlabels) containing labels for
- columns and rows respectively</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.datIO.fabiodata-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">clabels</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">rlabels</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">fname</span>=<span class="summary-sig-default">None</span>)</span><br />
- set up initial values</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.datIO-pysrc.html#fabiodata.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="read"></a><span class="summary-sig-name">read</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- To be overridden by format specific subclasses</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.datIO-pysrc.html#fabiodata.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
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- <table border="0" cellpadding="0" cellspacing="0" width="100%">
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- <td align="left"><span class="table-header">Properties</span></td>
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- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
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- <td align="left"><span class="table-header">Method Details</span></td>
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- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
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- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">data</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">clabels</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">rlabels</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">fname</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.datIO-pysrc.html#fabiodata.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>set up initial values</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.dm3image-module.html b/doc/html/fabio.dm3image-module.html
deleted file mode 100644
index 885dc9f..0000000
--- a/doc/html/fabio.dm3image-module.html
+++ /dev/null
@@ -1,276 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.dm3image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
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-
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- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module dm3image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.dm3image-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module dm3image</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.dm3image-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
- + Jon Wright, ESRF
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.dm3image.dm3image-class.html" class="summary-name">dm3image</a><br />
- Read and try to write the dm3 data format
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("dm3image")">logging.getLogger("dm3image")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.dm3image-module.html#DATA_TYPES" class="summary-name">DATA_TYPES</a> = <code title="{2: <type 'numpy.int16'>,
- 3: <type 'numpy.int32'>,
- 4: <type 'numpy.uint16'>,
- 5: <type 'numpy.uint32'>,
- 6: <type 'numpy.float32'>,
- 7: <type 'float'>,
- 8: <type 'numpy.int8'>,
- 9: None,
-..."><code class="variable-group">{</code>2<code class="variable-op">: </code><type 'numpy.int16'><code class="variable-op">, </code>3<code class="variable-op">: </code><type 'numpy.int32'><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.dm3image-module.html#DATA_BYTES" class="summary-name">DATA_BYTES</a> = <code title="{2: 2,
- 3: 4,
- 4: 2,
- 5: 4,
- 6: 4,
- 7: 8,
- 8: 1,
- 9: None,
-..."><code class="variable-group">{</code>2<code class="variable-op">: </code>2<code class="variable-op">, </code>3<code class="variable-op">: </code>4<code class="variable-op">, </code>4<code class="variable-op">: </code>2<code class="variable-op">, </code>5<code class="variable-op">: </code>4<code class="variable-op">, </code>6<code class="variable-op">: </code>4<code class="variable-op">, </code>7<code class="variable-op">: </code>8<code class="variable-op">, </code>8<code class="vari [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="DATA_TYPES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">DATA_TYPES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>2<code class="variable-op">: </code><type 'numpy.int16'><code class="variable-op">,</code>
- 3<code class="variable-op">: </code><type 'numpy.int32'><code class="variable-op">,</code>
- 4<code class="variable-op">: </code><type 'numpy.uint16'><code class="variable-op">,</code>
- 5<code class="variable-op">: </code><type 'numpy.uint32'><code class="variable-op">,</code>
- 6<code class="variable-op">: </code><type 'numpy.float32'><code class="variable-op">,</code>
- 7<code class="variable-op">: </code><type 'float'><code class="variable-op">,</code>
- 8<code class="variable-op">: </code><type 'numpy.int8'><code class="variable-op">,</code>
- 9<code class="variable-op">: </code>None<code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="DATA_BYTES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">DATA_BYTES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>2<code class="variable-op">: </code>2<code class="variable-op">,</code>
- 3<code class="variable-op">: </code>4<code class="variable-op">,</code>
- 4<code class="variable-op">: </code>2<code class="variable-op">,</code>
- 5<code class="variable-op">: </code>4<code class="variable-op">,</code>
- 6<code class="variable-op">: </code>4<code class="variable-op">,</code>
- 7<code class="variable-op">: </code>8<code class="variable-op">,</code>
- 8<code class="variable-op">: </code>1<code class="variable-op">,</code>
- 9<code class="variable-op">: </code>None<code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- </td>
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- >http://epydoc.sourceforge.net</a>
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.dm3image-pysrc.html b/doc/html/fabio.dm3image-pysrc.html
deleted file mode 100644
index 61ff22e..0000000
--- a/doc/html/fabio.dm3image-pysrc.html
+++ /dev/null
@@ -1,827 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.dm3image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
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- bgcolor="#a0c0ff" cellspacing="0">
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- href="fabio-module.html">Home</a> </th>
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module dm3image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.dm3image-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.dm3image-module.html">Module fabio.dm3image</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> + Jon Wright, ESRF</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-0', 'fabioimage', 'link-0');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-0');">fabioimage</a></tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt id="link-2" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-2', 'logger', 'link-2');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"dm3image"</tt><tt class="py-op">)</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt id="link-3" class="py-name" targets="Variable fabio.cbfimage.DATA_TYPES=fabio.cbfimage-module.html#DATA_TYPES,Variable fabio.dm3image.DATA_TYPES=fabio.dm3image-module.html#DATA_TYPES,Variable fabio.edfimage.DATA_TYPES=fabio.edfimage-module.html#DATA_TYPES,Variable fabio.kcdimage.DATA_TYPES=fabio.kcdimage-module.html#DATA_TYPES"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-3', 'DATA_TYPES', 'link-3');">DATA_TYPES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-number">2</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">,</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt class="py-number">4</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">,</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> <tt class="py-number">3</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-number">5</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">,</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> <tt class="py-number">6</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt class="py-number">7</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float</tt><tt class="py-op">,</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-number">8</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int8</tt><tt class="py-op">,</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt class="py-number">9</tt> <tt class="py-op">:</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-number">10</tt> <tt class="py-op">:</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-number">15</tt> <tt class="py-op">:</tt> <tt class="py-string">'Struct'</tt><tt class="py-op">,</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-number">18</tt> <tt class="py-op">:</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-number">20</tt> <tt class="py-op">:</tt> <tt class="py-name">None</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable fabio.dm3image.DATA_BYTES=fabio.dm3image-module.html#DATA_BYTES"><a title="fabio.dm3image.DATA_BYTES" class="py-name" href="#" onclick="return doclink('link-4', 'DATA_BYTES', 'link-4');">DATA_BYTES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-number">2</tt> <tt class="py-op">:</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-number">4</tt> <tt class="py-op">:</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-number">3</tt> <tt class="py-op">:</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-number">5</tt> <tt class="py-op">:</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-number">6</tt> <tt class="py-op">:</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-number">7</tt> <tt class="py-op">:</tt> <tt class="py-number">8</tt><tt class="py-op">,</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-number">8</tt> <tt class="py-op">:</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-number">9</tt> <tt class="py-op">:</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-number">10</tt> <tt class="py-op">:</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-number">15</tt> <tt class="py-op">:</tt> <tt class="py-string">'Struct'</tt><tt class="py-op">,</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-number">18</tt> <tt class="py-op">:</tt> <tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-number">20</tt> <tt class="py-op">:</tt> <tt class="py-name">None</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="dm3image"></a><div id="dm3image-def"><a name="L46"></a><tt class="py-lineno"> 46</tt> <a class="py-toggle" href="#" id="dm3image-toggle" onclick="return toggle('dm3image');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html">dm3image</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="dm3image-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="dm3image-expanded"><a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-docstring">""" Read and try to write the dm3 data format """</tt> </tt>
-<a name="dm3image.__init__"></a><div id="dm3image.__init__-def"><a name="L48"></a><tt class="py-lineno"> 48</tt> <a class="py-toggle" href="#" id="dm3image.__init__-toggle" onclick="return toggle('dm3image.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-param">ar [...]
-</div><div id="dm3image.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="dm3image.__init__-expanded"><a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt id="link-5" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-5', 'fabioimage', 'link-0');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage.__ini [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-6', '__init__', 'link-6');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-name">args</tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">kwargs</tt><tt class="py-op">)</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">encoded_datatype</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">no_data_elements</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_is_sorted</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_is_open</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_data_type</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_is_data</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_no_tags</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">bytes_in_file</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_label_length</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">go_on</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> </tt>
-<a name="dm3image._readheader"></a><div id="dm3image._readheader-def"><a name="L62"></a><tt class="py-lineno"> 62</tt> <a class="py-toggle" href="#" id="dm3image._readheader-toggle" onclick="return toggle('dm3image._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="dm3image._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="dm3image._readheader-expanded"><a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-name">file_format</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method fabio.dm3image.dm3image.readbytes()=fabio.dm3image.dm3image-class.html#readbytes"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-7', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</t [...]
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">file_format</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">,</tt> <tt class="py-string">'Wrong file type '</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">bytes_in_file</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-8', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py [...]
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">byte_order</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-9', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op [...]
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'read dm3 file - file format '</tt><tt class="py-op">,</tt> <tt class="py-name">file_format</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'Bytes in file : '</tt> <tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">bytes_in_file</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">'Byte order :'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">byte_order</tt><tt class="py-op">,</tt> <tt class="py-string">' - 0 = bigEndian , 1 = littleEndian'</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">byte_order</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">swap</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">byte_order</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">swap</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt> </tt>
-</div><a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> </tt>
-<a name="dm3image.read"></a><div id="dm3image.read-def"><a name="L79"></a><tt class="py-lineno"> 79</tt> <a class="py-toggle" href="#" id="dm3image.read-toggle" onclick="return toggle('dm3image.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py-p [...]
-</div><div id="dm3image.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="dm3image.read-expanded"><a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-10', 'head [...]
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-11', 'resetvals', 'link-11');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-12', '_open', 'link- [...]
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._rea [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-13', '_readheader', 'link-13');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">go_on</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">go_on</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">go_on</tt><tt class="py-op">:</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Method fabio.dm3image.dm3image.read_tag_group()=fabio.dm3image.dm3image-class.html#read_tag_group"><a title="fabio.dm3image.dm3image.read_tag_group" class="py-name" href="#" onclick="return doclink('link-14', 'read_tag_group', 'link-14');">read_tag_group</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Method fabio.dm3image.dm3image.read_tag_entry()=fabio.dm3image.dm3image-class.html#read_tag_entry"><a title="fabio.dm3image.dm3image.read_tag_entry" class="py-name" href="#" onclick="return doclink('link-15', 'read_tag_entry', 'link-15');">read_tag_entry</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">bytes_in_file</tt><tt class="py-op">:</tt> <tt class="py-keyword">break</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_is_data</tt> <tt class="py-op">==</tt> <tt class="py-number">21</tt><tt class="py-op">:</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="fabio.dm3image.dm3image.read_tag_entry" class="py-name" href="#" onclick="return doclink('link-16', 'read_tag_entry', 'link-15');">read_tag_entry</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">bytes_in_file</tt><tt class="py-op">:</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">go_on</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">dim1_raw</tt><tt class="py-op">,</tt> <tt class="py-name">dim2_raw</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-17', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt [...]
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">dim1_raw</tt><tt class="py-op">,</tt> <tt class="py-name">dim2_raw</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">eval</tt><tt class="py-op">(</tt><tt class="py-name">dim1_raw</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">eval</tt><tt class="py-op">(</tt><tt class="py-name">dim2_raw</tt><tt [...]
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">dim1_binning</tt><tt class="py-op">,</tt> <tt class="py-name">dim2_binning</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-18', 'header', 'link-10');">header</a></tt><tt class="py-o [...]
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">dim1_binning</tt><tt class="py-op">,</tt> <tt class="py-name">dim2_binning</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">eval</tt><tt class="py-op">(</tt><tt class="py-name">dim1_binning</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">eval</tt><tt class="py-op">(</tt><tt class="py-name">dim2_ [...]
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-19', 'dim1', 'link-19');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">dim1_raw</tt> <tt class="py-op">/</tt> <tt class="py-name"> [...]
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-20', 'dim2', 'link-20');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">dim2_raw</tt> <tt class="py-op">/</tt> <tt class="py-name"> [...]
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-comment">#print dim1,dim2</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-21', 'header', 'link-10');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt class="py-string">'Data'</tt><tt class="py-op">)</tt><tt class="py-op">: [...]
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-22', 'data', 'link-22');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-23', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Data'</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class=" [...]
-</div><a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> </tt>
-<a name="dm3image.readbytes"></a><div id="dm3image.readbytes-def"><a name="L106"></a><tt class="py-lineno">106</tt> <a class="py-toggle" href="#" id="dm3image.readbytes-toggle" onclick="return toggle('dm3image.readbytes');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html#readbytes">readbytes</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">bytes_to_read</tt>< [...]
-</div><div id="dm3image.readbytes-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="dm3image.readbytes-expanded"><a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-name">raw</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#r [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-26', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">bytes_to_read</tt><tt class="py-op">)</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">format</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt id="link-27" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-27', 'data', 'link-22');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">raw</tt><tt class="py-op">,</tt> <tt class="py-name">format</tt><tt class="py-op">)</tt> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt id="link-28" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-28', 'data', 'link-22');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">raw</tt> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">swap</tt><tt class="py-op">:</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt id="link-29" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-29', 'data', 'link-22');">data</a></tt> <tt class="py-op">=</tt> <tt id="link-30" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-30', 'data', 'link-22');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-31" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-31', 'data', 'link-22');">data</a></tt> </tt>
-</div><a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> </tt>
-<a name="dm3image.read_tag_group"></a><div id="dm3image.read_tag_group-def"><a name="L118"></a><tt class="py-lineno">118</tt> <a class="py-toggle" href="#" id="dm3image.read_tag_group-toggle" onclick="return toggle('dm3image.read_tag_group');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html#read_tag_group">read_tag_group</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="dm3image.read_tag_group-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="dm3image.read_tag_group-expanded"><a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_is_sorted</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-32', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt c [...]
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_is_open</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-33', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt cla [...]
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_no_tags</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-34', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt cla [...]
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt id="link-35" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-35', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'TagGroup is sorted? %s'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_is_sorted</tt><tt class="py-op">)</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt id="link-36" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-36', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'TagGroup is open? %s'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_is_open</tt><tt class="py-op">)</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt id="link-37" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-37', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'no of tags in TagGroup %s'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">grouptag_no_tags</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> </tt>
-<a name="dm3image.read_tag_entry"></a><div id="dm3image.read_tag_entry-def"><a name="L127"></a><tt class="py-lineno">127</tt> <a class="py-toggle" href="#" id="dm3image.read_tag_entry-toggle" onclick="return toggle('dm3image.read_tag_entry');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html#read_tag_entry">read_tag_entry</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="dm3image.read_tag_entry-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="dm3image.read_tag_entry-expanded"><a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_is_data</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-38', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="p [...]
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_label_length</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-39', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">2</tt><tt cla [...]
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt id="link-40" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-40', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'does Tag have data ? %s - 20 = Tag group , 21 = data '</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_is_data</tt><tt class="py-op">)</tt> </tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt id="link-41" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-41', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'length of tag_label '</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_label_length</tt><tt class="py-op">)</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_label_length</tt> <tt class="py-op">!=</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-name">tag_label</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-42', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_label_length</tt><tt class="py-op">)</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-name">tag_label</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_is_data</tt> <tt class="py-op">==</tt> <tt class="py-number">21</tt><tt class="py-op">:</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-comment"># This is data</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-43', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_label</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class [...]
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt id="link-45" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-45', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"%s: %s"</tt><tt class="py-op">,</tt> <tt class="py-name">tag_label</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclin [...]
-</div><a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> </tt>
-<a name="dm3image.read_tag_type"></a><div id="dm3image.read_tag_type-def"><a name="L144"></a><tt class="py-lineno">144</tt> <a class="py-toggle" href="#" id="dm3image.read_tag_type-toggle" onclick="return toggle('dm3image.read_tag_type');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html#read_tag_type">read_tag_type</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op" [...]
-</div><div id="dm3image.read_tag_type-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="dm3image.read_tag_type-expanded"><a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-47', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-string">'%%%%'</tt><tt class="py-op">:</tt> </tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt> </tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_data_type</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-48', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class= [...]
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt id="link-49" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-49', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'data is of type : %s - 1 = simple, 2= string, 3 = array, >3 structs'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_data_type</tt><tt class="py-op">)</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-50', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt cla [...]
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt id="link-51" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-51', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'encode type: %s %s'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt><tt class="py-op">,</tt> <tt id="link-52" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-52', 'DATA_TYPES', 'link-3');">DATA_TYPES</a></tt><tt class="py-op">[</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_data_type</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-comment"># simple type</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-53', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt id="link-54" class="py-name"><a title="fabio.dm3image.DATA_BYTES" class="py-name" href="#" onclick="return docli [...]
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt id="link-55" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-55', 'DATA_TYPES', 'link-3');">DATA_TYPES</a></tt><tt class="py-op">[</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-name">swap</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">swap</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-comment"># are the data stored in a simple array?</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt> <tt class="py-op">==</tt> <tt class="py-number">20</tt> <tt class="py-keyword">and</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_data_type</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt> <tt class="py-op">:</tt> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_type</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-56', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class= [...]
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">no_data_elements</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-57', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt [...]
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_type</tt> <tt class="py-op">==</tt> <tt class="py-number">10</tt><tt class="py-op">:</tt> </tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt id="link-58" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-58', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'skip bytes %s'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">no_data_elements</tt><tt class="py-op">)</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-name">dump</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-59', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">no_data_elements</tt><tt class="py-op">)</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt id="link-60" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-60', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'Data are stored as a simple a array -'</tt><tt class="py-op">)</tt> </tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt id="link-61" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-61', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'%s data elemets stored as %s'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">no_data_elements</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_type</tt><tt cl [...]
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-name">read_no_bytes</tt> <tt class="py-op">=</tt> <tt id="link-62" class="py-name"><a title="fabio.dm3image.DATA_BYTES" class="py-name" href="#" onclick="return doclink('link-62', 'DATA_BYTES', 'link-4');">DATA_BYTES</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_type</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class [...]
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-name">format</tt> <tt class="py-op">=</tt> <tt id="link-63" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-63', 'DATA_TYPES', 'link-3');">DATA_TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">data_type</tt><tt class="py-op">]</tt> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-64', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-name">read_no_bytes</tt><tt class="py-op">,</tt> <tt class="py-name">format</tt><tt class="py-op">,</t [...]
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> </tt>
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-comment"># are the data stored in a complex array ?</tt> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-comment"># print 'tag_type + data_type', self.tag_encoded_type,self.tag_data_type</tt> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> </tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-comment">#print self.tag_encoded_type , self.tag_data_type </tt> </tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt> <tt class="py-op">==</tt> <tt class="py-number">20</tt> <tt class="py-keyword">and</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_data_type</tt> <tt class="py-op">></tt> <tt class="py-number">3</tt> <tt class="py-op">:</tt> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-65', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt [...]
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt id="link-66" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-66', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'found array - new tag_encoded_type %s'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt><tt class="py-op">)</tt> </tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt> <tt class="py-op">==</tt> <tt class="py-number">15</tt><tt class="py-op">:</tt> <tt class="py-comment"># struct type</tt> </tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-comment">###type = self.readbytes(4,numpy.int32)</tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-name">struct_name_length</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-67', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-name">numpy [...]
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-name">struct_number_fields</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-68', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-name">num [...]
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-comment">#print 'struct - name_length, number_field', struct_name_length,struct_number_fields</tt> </tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-comment">#print self.infile.read(struct_name_length)</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-name">field_info</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-69" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-69', 'i', 'link-69');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">struct_number_fields</tt><tt class="py-op">)</t [...]
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-name">field_info</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-70" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-70', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt c [...]
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-comment">#print field_info</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">no_data_elements</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-72', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt [...]
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-comment">#print '%i data elemets stored as ' %self.no_data_elements</tt> </tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-name">bytes_in_struct</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-73" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-73', 'i', 'link-69');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">struct_number_fields</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-name">bytes_in_struct</tt> <tt class="py-op">+=</tt> <tt id="link-74" class="py-name"><a title="fabio.dm3image.DATA_BYTES" class="py-name" href="#" onclick="return doclink('link-74', 'DATA_BYTES', 'link-4');">DATA_BYTES</a></tt><tt class="py-op">[</tt><tt class="py-name">field_info</tt><tt class="py-op">[</tt><tt id="link-75" class="py-name"><a title="fabio.fabioutils.i" class="py-nam [...]
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt id="link-76" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-76', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">'skip bytes %s'</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">no_data_elements</tt> <tt class="py-op">*</tt> <tt class="py-name">bytes_in_struct</tt><tt class="py-op">)</tt> </tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-name">dump</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-77', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">no_data_elements</tt> <tt class="py-op">*</tt> <tt class="py-name">bytes_in_struct</tt><tt class="py-op">)</tt> </tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> </tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> </tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_encoded_type</tt> <tt class="py-op">==</tt> <tt class="py-number">15</tt><tt class="py-op">:</tt> <tt class="py-comment"># struct type</tt> </tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-comment">###type = self.readbytes(4,numpy.int32)</tt> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-name">struct_name_length</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-78', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt [...]
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-name">struct_number_fields</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-79', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</ [...]
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-comment">#print 'struct - name_length, number_field', struct_name_length,struct_number_fields</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-comment">#print self.infile.read(struct_name_length)</tt> </tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-name">field_info</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-80" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-80', 'i', 'link-69');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">struct_number_fields</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-name">field_info</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-81" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-81', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class [...]
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-comment">#print field_info</tt> </tt>
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-name">field_data</tt> <tt class="py-op">=</tt> <tt class="py-string">''</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-83" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-83', 'i', 'link-69');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">struct_number_fields</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-comment">#print type(i)</tt> </tt>
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-name">field_data</tt> <tt class="py-op">=</tt> <tt class="py-name">field_data</tt> <tt class="py-op">+</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-84', 'readbytes', 'link-7');">readbytes</a></tt><tt class="py-op">(</tt><tt class="py-name">field [...]
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-name">field_data</tt> <tt class="py-op">=</tt> <tt class="py-name">field_data</tt> <tt class="py-op">+</tt> <tt class="py-string">'%i '</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-86" class="py-name"><a title="fabio.dm3image.dm3image.readbytes" class="py-name" href="#" onclick="return doclink('link-86', 'readbytes', 'link-7');">readbyte [...]
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt id="link-89" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-89', 'DATA_TYPES', 'link-3');">DATA_TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">field_info</tt><tt class="py-op">[</tt><tt id="link-90" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-90', 'i', 'link-69');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">]</tt><t [...]
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-name">swap</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">swap</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">field_data</tt> </tt>
-</div><a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> </tt>
-<a name="dm3image.read_data"></a><div id="dm3image.read_data-def"><a name="L217"></a><tt class="py-lineno">217</tt> <a class="py-toggle" href="#" id="dm3image.read_data-toggle" onclick="return toggle('dm3image.read_data');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.dm3image.dm3image-class.html#read_data">read_data</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="dm3image.read_data-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="dm3image.read_data-expanded"><a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">encoded_datatype</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="p [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-91', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:28 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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-<script type="text/javascript">
- <!--
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- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.dm3image.dm3image-class.html b/doc/html/fabio.dm3image.dm3image-class.html
deleted file mode 100644
index 149d9a2..0000000
--- a/doc/html/fabio.dm3image.dm3image-class.html
+++ /dev/null
@@ -1,491 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.dm3image.dm3image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
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- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.dm3image-module.html">Module dm3image</a> ::
- Class dm3image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.dm3image.dm3image-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class dm3image</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">dm3image</strong>
-</pre>
-
-<hr />
-<p>Read and try to write the dm3 data format</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.dm3image.dm3image-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">*args</span>,
- <span class="summary-sig-arg">**kwargs</span>)</span><br />
- Set up initial values</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.dm3image.dm3image-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>)</span><br />
- Must be overridden in classes</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.dm3image.dm3image-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- To be overridden - fill in self.header and self.data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="readbytes"></a><span class="summary-sig-name">readbytes</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">bytes_to_read</span>,
- <span class="summary-sig-arg">format</span>,
- <span class="summary-sig-arg">swap</span>=<span class="summary-sig-default">True</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.readbytes">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="read_tag_group"></a><span class="summary-sig-name">read_tag_group</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.read_tag_group">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="read_tag_entry"></a><span class="summary-sig-name">read_tag_entry</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.read_tag_entry">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="read_tag_type"></a><span class="summary-sig-name">read_tag_type</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.read_tag_type">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="read_data"></a><span class="summary-sig-name">read_data</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.read_data">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#write">write</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">*args</span>,
- <span class="sig-arg">**kwargs</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Set up initial values</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Must be overridden in classes</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.dm3image-pysrc.html#dm3image.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>To be overridden - fill in self.header and self.data</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.edfimage-module.html b/doc/html/fabio.edfimage-module.html
deleted file mode 100644
index be88cc6..0000000
--- a/doc/html/fabio.edfimage-module.html
+++ /dev/null
@@ -1,342 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.edfimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module edfimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.edfimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module edfimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.edfimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-License: GPLv2+
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
- + Jon Wright, ESRF
-
-2011-02-11: Mostly rewritten by Jérôme Kieffer (Jerome.Kieffer at esrf.eu)
- European Synchrotron Radiation Facility
- Grenoble (France)
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.Frame-class.html" class="summary-name">Frame</a><br />
- A class representing a single frame in an EDF file
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html" class="summary-name">edfimage</a><br />
- Read and try to write the ESRF edf data format
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("edfimage")">logging.getLogger("edfimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="BLOCKSIZE"></a><span class="summary-name">BLOCKSIZE</span> = <code title="512">512</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage-module.html#DATA_TYPES" class="summary-name">DATA_TYPES</a> = <code title="{'Double': <type 'numpy.float64'>,
- 'DoubleIEEE64': <type 'numpy.float64'>,
- 'DoubleValue': <type 'numpy.float64'>,
- 'FLOAT': <type 'numpy.float32'>,
- 'FLOATVALUE': <type 'numpy.float32'>,
- 'Float': <type 'numpy.float32'>,
- 'Float32': <type 'numpy.float32'>,
- 'FloatIEEE32': <type 'numpy.float32'>,
-..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">Double</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float64'><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">DoubleIEEE64</code><code class="variable-quote">'</code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage-module.html#NUMPY_EDF_DTYPE" class="summary-name">NUMPY_EDF_DTYPE</a> = <code title="{'float32': 'FloatValue',
- 'float64': 'DoubleValue',
- 'int16': 'SignedShort',
- 'int32': 'SignedInteger',
- 'int64': 'Signed64',
- 'int8': 'SignedByte',
- 'uint16': 'UnsignedShort',
- 'uint32': 'UnsignedInteger',
-..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">float32</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">FloatValue</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">float64</code><code class="variable-quote">'</code><code class="variable-o [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage-module.html#MINIMUM_KEYS" class="summary-name">MINIMUM_KEYS</a> = <code title="['HEADERID',
- 'IMAGE',
- 'BYTEORDER',
- 'DATATYPE',
- 'DIM_1',
- 'DIM_2',
- 'SIZE']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">HEADERID</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">IMAGE</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">BYTEORDER</code><code class="variable-quote">'</code><code class="variabl [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="DEFAULT_VALUES"></a><span class="summary-name">DEFAULT_VALUES</span> = <code title="{}"><code class="variable-group">{</code><code class="variable-group">}</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="DATA_TYPES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">DATA_TYPES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">Double</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float64'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">DoubleIEEE64</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float64'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">DoubleValue</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float64'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">FLOAT</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float32'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">FLOATVALUE</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float32'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Float</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float32'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Float32</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float32'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">FloatIEEE32</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float32'><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="NUMPY_EDF_DTYPE"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">NUMPY_EDF_DTYPE</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">float32</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">FloatValue</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">float64</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">DoubleValue</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">int16</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">SignedShort</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">int32</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">SignedInteger</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">int64</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Signed64</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">int8</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">SignedByte</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">uint16</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">UnsignedShort</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">uint32</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">UnsignedInteger</code><code class="variable-quote">'</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="MINIMUM_KEYS"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">MINIMUM_KEYS</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">HEADERID</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">IMAGE</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">BYTEORDER</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">DATATYPE</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">DIM_1</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">DIM_2</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">SIZE</code><code class="variable-quote">'</code><code class="variable-group">]</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
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- href="module-tree.html">Trees</a> </th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.edfimage-pysrc.html b/doc/html/fabio.edfimage-pysrc.html
deleted file mode 100644
index 41092ff..0000000
--- a/doc/html/fabio.edfimage-pysrc.html
+++ /dev/null
@@ -1,1966 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.edfimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module edfimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
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- >[<a href="frames.html" target="_top">frames</a
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- target="_top">no frames</a>]</span></td></tr>
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- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.edfimage-module.html">Module fabio.edfimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"># -*- coding: utf8 -*-</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">License: GPLv2+</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring"> + Jon Wright, ESRF</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-docstring">2011-02-11: Mostly rewritten by Jérôme Kieffer (Jerome.Kieffer at esrf.eu) </tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-docstring"> European Synchrotron Radiation Facility</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-docstring"> Grenoble (France)</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">os</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">types</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"edfimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-3" class="py-name" targets="Module fabio.fabioutils=fabio.fabioutils-module.html"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-3', 'fabioutils', 'link-3');">fabioutils</a></tt> <tt class="py-keyword">import</tt> <tt id="link-4" class="py-name" targets="Static Method fabio.cbfimage.CIF.isAscii()=fabio.cbfimage.CIF-class.html#isAscii,Func [...]
-fabio.fabioutils.isAscii" class="py-name" href="#" onclick="return doclink('link-4', 'isAscii', 'link-4');">isAscii</a></tt><tt class="py-op">,</tt> <tt id="link-5" class="py-name" targets="Function fabio.fabioutils.toAscii()=fabio.fabioutils-module.html#toAscii"><a title="fabio.fabioutils.toAscii" class="py-name" href="#" onclick="return doclink('link-5', 'toAscii', 'link-5');">toAscii</a></tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-6" class="py-name" targets="Module fabio.compression=fabio.compression-module.html"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-6', 'compression', 'link-6');">compression</a></tt> <tt class="py-keyword">import</tt> <tt id="link-7" class="py-name" targets="Function fabio.compression.decBzip2()=fabio.compression-module.html#decBzip2"><a [...]
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt id="link-10" class="py-name" targets="Variable fabio.edfimage.BLOCKSIZE=fabio.edfimage-module.html#BLOCKSIZE"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick="return doclink('link-10', 'BLOCKSIZE', 'link-10');">BLOCKSIZE</a></tt> <tt class="py-op">=</tt> <tt class="py-number">512</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt id="link-11" class="py-name" targets="Variable fabio.cbfimage.DATA_TYPES=fabio.cbfimage-module.html#DATA_TYPES,Variable fabio.dm3image.DATA_TYPES=fabio.dm3image-module.html#DATA_TYPES,Variable fabio.edfimage.DATA_TYPES=fabio.edfimage-module.html#DATA_TYPES,Variable fabio.kcdimage.DATA_TYPES=fabio.kcdimage-module.html#DATA_TYPES"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-11', 'DATA_TYPES', 'link-11');">DATA_TYPES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-string">"SignedByte"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int8</tt><tt class="py-op">,</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-string">"Signed8"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int8</tt><tt class="py-op">,</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-string">"UnsignedByte"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">,</tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-string">"Unsigned8"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">,</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-string">"SignedShort"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">,</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-string">"Signed16"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">,</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-string">"UnsignedShort"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">,</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-string">"Unsigned16"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">,</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-string">"UnsignedShortInteger"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">,</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-string">"SignedInteger"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-string">"Signed32"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-string">"UnsignedInteger"</tt><tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">,</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-string">"Unsigned32"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">,</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-string">"SignedLong"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-string">"UnsignedLong"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">,</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-string">"Signed64"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int64</tt><tt class="py-op">,</tt> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-string">"Unsigned64"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint64</tt><tt class="py-op">,</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-string">"FloatValue"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-string">"FLOATVALUE"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-string">"FLOAT"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> <tt class="py-comment"># fit2d</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-string">"Float"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> <tt class="py-comment"># fit2d</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-string">"FloatIEEE32"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-string">"Float32"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-string">"Double"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">,</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-string">"DoubleValue"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">,</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-string">"FloatIEEE64"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt><tt class="py-op">,</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-string">"DoubleIEEE64"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"><tt id="link-12" class="py-name" targets="Variable fabio.edfimage.NUMPY_EDF_DTYPE=fabio.edfimage-module.html#NUMPY_EDF_DTYPE"><a title="fabio.edfimage.NUMPY_EDF_DTYPE" class="py-name" href="#" onclick="return doclink('link-12', 'NUMPY_EDF_DTYPE', 'link-12');">NUMPY_EDF_DTYPE</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">"int8"</tt> <tt class="py-op">:</tt><tt class="py-string">"S [...]
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-string">"int16"</tt> <tt class="py-op">:</tt><tt class="py-string">"SignedShort"</tt><tt class="py-op">,</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-string">"int32"</tt> <tt class="py-op">:</tt><tt class="py-string">"SignedInteger"</tt><tt class="py-op">,</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-string">"int64"</tt> <tt class="py-op">:</tt><tt class="py-string">"Signed64"</tt><tt class="py-op">,</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-string">"uint8"</tt> <tt class="py-op">:</tt><tt class="py-string">"UnsignedByte"</tt><tt class="py-op">,</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-string">"uint16"</tt> <tt class="py-op">:</tt><tt class="py-string">"UnsignedShort"</tt><tt class="py-op">,</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-string">"uint32"</tt> <tt class="py-op">:</tt><tt class="py-string">"UnsignedInteger"</tt><tt class="py-op">,</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-string">"uint64"</tt> <tt class="py-op">:</tt><tt class="py-string">"Unsigned64"</tt><tt class="py-op">,</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-string">"float32"</tt> <tt class="py-op">:</tt><tt class="py-string">"FloatValue"</tt><tt class="py-op">,</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-string">"float64"</tt> <tt class="py-op">:</tt><tt class="py-string">"DoubleValue"</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"><tt id="link-13" class="py-name" targets="Variable fabio.cbfimage.MINIMUM_KEYS=fabio.cbfimage-module.html#MINIMUM_KEYS,Variable fabio.edfimage.MINIMUM_KEYS=fabio.edfimage-module.html#MINIMUM_KEYS,Variable fabio.kcdimage.MINIMUM_KEYS=fabio.kcdimage-module.html#MINIMUM_KEYS"><a title="fabio.cbfimage.MINIMUM_KEYS
-fabio.edfimage.MINIMUM_KEYS
-fabio.kcdimage.MINIMUM_KEYS" class="py-name" href="#" onclick="return doclink('link-13', 'MINIMUM_KEYS', 'link-13');">MINIMUM_KEYS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">'HEADERID'</tt><tt class="py-op">,</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-string">'IMAGE'</tt><tt class="py-op">,</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-string">'BYTEORDER'</tt><tt class="py-op">,</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-string">'DATATYPE'</tt><tt class="py-op">,</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-string">'DIM_1'</tt><tt class="py-op">,</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-string">'DIM_2'</tt><tt class="py-op">,</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-string">'SIZE'</tt><tt class="py-op">]</tt> <tt class="py-comment"># Size is thought to be essential for writing at least</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt id="link-14" class="py-name" targets="Variable fabio.edfimage.DEFAULT_VALUES=fabio.edfimage-module.html#DEFAULT_VALUES,Variable fabio.kcdimage.DEFAULT_VALUES=fabio.kcdimage-module.html#DEFAULT_VALUES"><a title="fabio.edfimage.DEFAULT_VALUES
-fabio.kcdimage.DEFAULT_VALUES" class="py-name" href="#" onclick="return doclink('link-14', 'DEFAULT_VALUES', 'link-14');">DEFAULT_VALUES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-comment"># I do not define default values as they will be calculated at write time</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-comment"># JK20110415</tt> </tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="Frame"></a><div id="Frame-def"><a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <a class="py-toggle" href="#" id="Frame-toggle" onclick="return toggle('Frame');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.edfimage.Frame-class.html">Frame</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="Frame-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Frame-expanded"><a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt class="py-docstring"> A class representing a single frame in an EDF file</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="Frame.__init__"></a><div id="Frame.__init__-def"><a name="L88"></a><tt class="py-lineno"> 88</tt> <a class="py-toggle" href="#" id="Frame.__init__-toggle" onclick="return toggle('Frame.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.Frame-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">data</tt><tt class="py-op">=</tt><tt clas [...]
-</div><div id="Frame.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Frame.__init__-expanded"><a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-15" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-15', 'header', 'link-15');">he [...]
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-16', 'header', 'link-15');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-17', 'header', 'link-15');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">dict</tt><tt class="py-op">(</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" oncli [...]
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-19" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimage.edfimage-class.html#header_keys"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-19', 'header_keys', 'link-19');">header_keys</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-20', 'header_keys', 'link-19');">header_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" [...]
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-22', 'header_keys', 'link-19');">header_keys</a></tt> <tt class="py-op">=</tt> <tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-23', 'he [...]
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-24" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-24', 'key', 'link-24');">key</a></tt> <tt class="py-keyword">in</tt> <tt id="link-25" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="re [...]
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-26" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-26', 'key', 'link-24');">key</a></tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" o [...]
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt id="link-28" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-28', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Header key %s, in header_keys is not in header dictionary, poping !!!"</tt> <tt class="py-op">%</tt> <tt id="link-29" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-29', 'key', 'link-24');">key</a></tt><tt class=" [...]
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-30', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt id="link-31" class="py-name"><a title="fabio.fabioutils.key" class="py-name" [...]
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name" targets="Variable fabio.edfimage.edfimage.capsHeader=fabio.edfimage.edfimage-class.html#capsHeader"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-32', 'capsHeader', 'link-32');">capsHeader</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-33" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-33', 'key', 'link-24');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-34', [...]
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-35', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">[</tt><tt id="link-36" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-36', 'key', 'link-24'); [...]
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt id="link-38" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-38', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Header key %s is not a string"</tt> <tt class="py-op">%</tt> <tt id="link-39" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-39', 'key', 'link-24');">key</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_data</tt> <tt class="py-op">=</tt> <tt id="link-40" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-40', 'data', 'link-40');">data</a></tt> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name" targets="Variable fabio.edfimage.edfimage.dims=fabio.edfimage.edfimage-class.html#dims"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-41', 'dims', 'link-41');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-42', 'dim1', 'link-42');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-43', 'dim2', 'link-43');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-44', 'bpp', 'link-44');">bpp</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-45', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">number</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">number</tt><tt class="py-op">,</tt> <tt class="py-name">int</tt><tt class="py-op">)</tt><tt class= [...]
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">iFrame</tt> <tt class="py-op">=</tt> <tt class="py-name">number</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">iFrame</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-</div><a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> </tt>
-<a name="Frame.parseheader"></a><div id="Frame.parseheader-def"><a name="L123"></a><tt class="py-lineno">123</tt> <a class="py-toggle" href="#" id="Frame.parseheader-toggle" onclick="return toggle('Frame.parseheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.Frame-class.html#parseheader">parseheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">block</tt><tt class="p [...]
-</div><div id="Frame.parseheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Frame.parseheader-expanded"><a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"><tt class="py-docstring"> Parse the header in some EDF format from an already open file</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"><tt class="py-docstring"> @param block: string representing the header block</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"><tt class="py-docstring"> @type block: string, should be full ascii</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"><tt class="py-docstring"> @return: size of the binary blob</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-comment">#reset values ...</tt> </tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-46', 'header', 'link-15');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-47', 'capsHeader', 'link-32');">capsHeader</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-48', 'header_keys', 'link-19');">header_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-name">calcsize</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-49', 'dims', 'link-41');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">line</tt> <tt class="py-keyword">in</tt> <tt class="py-name">block</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">';'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'='</tt> <tt class="py-keyword">in</tt> <tt class="py-name">line</tt><tt class="py-op">:</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt id="link-50" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-50', 'key', 'link-24');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">'='</tt> <tt class="py-op">,</tt> <tt cl [...]
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt id="link-51" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-51', 'key', 'link-24');">key</a></tt> <tt class="py-op">=</tt> <tt id="link-52" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-52', 'key', 'link-24');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class=" [...]
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-53', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt id="link-54" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-54', 'key', 'link-24');">key</a></t [...]
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-55', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">[</tt><tt id="link-56" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-56', 'key', 'link-24'); [...]
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-58', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-59" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href [...]
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> </tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-comment"># Compute image size</tt> </tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"SIZE"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-60', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-61', 'header', 'link-15');">header</a></tt><tt class="py-op">[ [...]
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt id="link-63" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-63', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to convert to integer : %s %s "</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doc [...]
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"DIM_1"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-67', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt id="link-68" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-68', 'dim1', 'link-42');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick [...]
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt id="link-71" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-71', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to convert to integer Dim_1: %s %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return d [...]
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-name">calcsize</tt> <tt class="py-op">*=</tt> <tt id="link-75" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-75', 'dim1', 'link-42');">dim1</a></tt> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-76', 'dims', 'link-41');">dims</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-77" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick= [...]
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt id="link-78" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-78', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"No Dim_1 in headers !!!"</tt><tt class="py-op">)</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"DIM_2"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-79', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt id="link-80" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-80', 'dim2', 'link-43');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-81" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick [...]
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt id="link-83" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-83', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to convert to integer Dim_3: %s %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return d [...]
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-name">calcsize</tt> <tt class="py-op">*=</tt> <tt id="link-87" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-87', 'dim2', 'link-43');">dim2</a></tt> </tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-88', 'dims', 'link-41');">dims</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-89" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick= [...]
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt id="link-90" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-90', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"No Dim_2 in headers !!!"</tt><tt class="py-op">)</tt> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt class="py-name">iDim</tt> <tt class="py-op">=</tt> <tt class="py-number">3</tt> </tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">iDim</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-name">strDim</tt> <tt class="py-op">=</tt> <tt class="py-string">"DIM_%i"</tt> <tt class="py-op">%</tt> <tt class="py-name">iDim</tt> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">strDim</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-91" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-91', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-name">dim3</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-92', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-o [...]
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt id="link-94" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-94', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to convert to integer %s: %s %s"</tt> </tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">strDim</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-95', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">[</tt><tt class="py-name"> [...]
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-name">dim3</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-name">iDim</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-name">calcsize</tt> <tt class="py-op">*=</tt> <tt class="py-name">dim3</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-98" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-98', 'dims', 'link-41');">dims</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">dim3</tt><tt class="py-op">)</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-name">iDim</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt id="link-99" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-99', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"No Dim_3 -> it is a 2D image"</tt><tt class="py-op">)</tt> </tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-name">iDim</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-100', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"DATATYPE"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-101" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-101', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-102" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-102', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-op">=</tt> <tt id="link-103" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-103', 'DATA_TYPES', 'link-11');">DATA_TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-104" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-104', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-105" class="py-n [...]
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-106" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-106', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> </tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt id="link-107" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-107', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Defaulting type to uint16"</tt><tt class="py-op">)</tt> </tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-108" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-108', 'bpp', 'link-44');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-109" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_ser [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-111', 'tostring', 'link-111');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-name">calcsize</tt> <tt class="py-op">*=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-112" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-112', 'bpp', 'link-44');">bpp</a></tt> </tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">calcsize</tt> </tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">!=</tt> <tt class="py-name">calcsize</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-string">"COMPRESSION"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-113" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-113', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">)</tt> <tt class="py-key [...]
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt id="link-116" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-116', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">"Mismatch between the expected size %s and the calculated one %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt><tt class="py-op">,</tt> <tt class="py-name">calcsize</tt><tt class="p [...]
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">calcsize</tt> </tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-117" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-117', 'i', 'link-117');">i</a></tt><tt class="py-op">,</tt> <tt class="py-name">n</tt> <tt class="py-keyword">in</tt> <tt class="py-name">enumerate</tt><tt class="py-op">(</tt><tt class="py-nam [...]
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-name">setattr</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-string">"dim%i"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-119" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-119', 'i', 'link-117');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt cla [...]
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> </tt>
-</div><a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> </tt>
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> </tt>
-<a name="Frame.swap_needed"></a><div id="Frame.swap_needed-def"><a name="L212"></a><tt class="py-lineno">212</tt> <a class="py-toggle" href="#" id="Frame.swap_needed-toggle" onclick="return toggle('Frame.swap_needed');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.Frame-class.html#swap_needed">swap_needed</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="Frame.swap_needed-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Frame.swap_needed-expanded"><a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"><tt class="py-docstring"> Decide if we need to byteswap</tt> </tt>
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-string">'Low'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-120" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-120', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="p [...]
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'High'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-122" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-122', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-123 [...]
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">False</tt> </tt>
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-string">'High'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-124', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class=" [...]
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'Low'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-126" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-126', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-127" [...]
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-128" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-128', 'bpp', 'link-44');">bpp</a></tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</t [...]
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">True</tt> </tt>
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">False</tt> </tt>
-</div><a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> </tt>
-<a name="Frame.getData"></a><div id="Frame.getData-def"><a name="L227"></a><tt class="py-lineno">227</tt> <a class="py-toggle" href="#" id="Frame.getData-toggle" onclick="return toggle('Frame.getData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.Frame-class.html#getData">getData</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="Frame.getData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Frame.getData-expanded"><a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"><tt class="py-docstring"> Unpack a binary blob according to the specification given in the header</tt> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"><tt class="py-docstring"> @return: dataset as numpy.ndarray</tt> </tt>
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt id="link-129" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-129', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_data</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt id="link-130" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-130', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_data</tt> </tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt id="link-131" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-131', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_data</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-132" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-132', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"DATATYPE"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-133" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-133', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-134" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-134', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-op">=</tt> <tt id="link-135" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-135', 'DATA_TYPES', 'link-11');">DATA_TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-136" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-136', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-137" class="py-n [...]
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-138" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-138', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> </tt>
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt id="link-139" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-139', 'dims', 'link-41');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-140" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-140', 'dims', 'link-41');">dims< [...]
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt id="link-141" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-141', 'dims', 'link-41');">dims</a></tt><tt class="py-op">.</tt><tt class="py-name">reverse</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> </tt>
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-string">"COMPRESSION"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-142" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-142', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">)</tt><tt class="py-op"> [...]
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt id="link-143" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-143', 'compression', 'link-6');">compression</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-144" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-144', 'header', 'link-15 [...]
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-name">uncompressed_size</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-146" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-146', 'bpp', 'link-44');">bpp</a></tt> </tt>
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-147" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-147', 'i', 'link-117');">i</a></tt> <tt class="py-keyword">in</tt> <tt id="link-148" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-148', 'dims', 'link-41');">dims</a></tt><tt class="py-op"> [...]
-<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt class="py-name">uncompressed_size</tt> <tt class="py-op">*=</tt> <tt id="link-149" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-149', 'i', 'link-117');">i</a></tt> </tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"OFFSET"</tt> <tt class="py-keyword">in</tt> <tt id="link-150" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-150', 'compression', 'link-6');">compression</a></tt> <tt class="py-op">:</tt> </tt>
-<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt id="link-151" class="py-name" targets="Module fabio.byte_offset=fabio.byte_offset-module.html"><a title="fabio.byte_offset" class="py-name" href="#" onclick="return doclink('link-151', 'byte_offset', 'link-151');">byte_offset</a></tt><tt class="py-comment">#IGNORE:F0401</tt> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt id="link-152" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-152', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Unimplemented compression scheme: %s (%s)"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-153" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-153', 'compression', 'link-6');">compression</a></tt>< [...]
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-name">myData</tt> <tt class="py-op">=</tt> <tt id="link-154" class="py-name"><a title="fabio.byte_offset" class="py-name" href="#" onclick="return doclink('link-154', 'byte_offset', 'link-151');">byte_offset</a></tt><tt class="py-op">.</tt><tt class="py-name">analyseCython</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData< [...]
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">myData</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-155" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-155', 'bytecode', 'link-45');">bytecode</a> [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-156', 'tostring', 'link-111');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">uncompressed_size</tt> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-157" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-157', 'compression', 'link-6');">compression</a></tt> <tt class="py-op">==</tt> <tt class="py-string">"NONE"</tt><tt class="py-op">:</tt> </tt>
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> </tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-string">"GZIP"</tt> <tt class="py-keyword">in</tt> <tt id="link-158" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-158', 'compression', 'link-6');">compression</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt id="link-159" class="py-name"><a title="fabio.compression.decGzip" class="py-name" href="#" onclick="return doclink('link-159', 'decGzip', 'link-8');">decGzip</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> </tt>
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">uncompressed_size</tt> </tt>
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-string">"BZ"</tt> <tt class="py-keyword">in</tt> <tt id="link-160" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-160', 'compression', 'link-6');">compression</a></tt> <tt class="py-op">:</tt> </tt>
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt id="link-161" class="py-name"><a title="fabio.compression.decBzip2" class="py-name" href="#" onclick="return doclink('link-161', 'decBzip2', 'link-7');">decBzip2</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> </tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">uncompressed_size</tt> </tt>
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-string">"Z"</tt> <tt class="py-keyword">in</tt> <tt id="link-162" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-162', 'compression', 'link-6');">compression</a></tt> <tt class="py-op">:</tt> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt id="link-163" class="py-name"><a title="fabio.compression.decZlib" class="py-name" href="#" onclick="return doclink('link-163', 'decZlib', 'link-9');">decZlib</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> </tt>
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">uncompressed_size</tt> </tt>
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt id="link-164" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-164', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Unknown compression scheme %s"</tt> <tt class="py-op">%</tt> <tt id="link-165" class="py-name"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-165', 'compression', 'link-6');">compression</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> </tt>
-<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> </tt>
-<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> </tt>
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-name">expected</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> </tt>
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-name">obtained</tt> <tt class="py-op">=</tt> <tt id="link-166" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-166', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">expected</tt> <tt class="py-op">></tt> <tt class="py-name">obtained</tt><tt class="py-op">:</tt> </tt>
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt id="link-167" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-167', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Data stream is incomplete: %s < expected %s bytes"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">obtained</tt><tt class="py-op">,</tt> <tt class="py-name">expected</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">+=</tt> <tt class="py-string">"\x00"</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-name">expected</tt> <tt class="py-op">-</tt> <tt class="py-name">obtained</tt><tt class="py-op">)</tt> </tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">expected</tt> <tt class="py-op"><</tt> <tt id="link-168" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-168', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt id="link-169" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-169', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">"Data stream contains trailing junk : %s > expected %s bytes"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">obtained</tt><tt class="py-op">,</tt> <tt class="py-name">expected</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> <tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">rawData</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">expected</tt><tt class="py-op">]</tt> </tt>
-<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-170" class="py-name" targets="Static Method fabio.binaryimage.binaryimage.swap_needed()=fabio.binaryimage.binaryimage-class.html#swap_needed,Method fabio.edfimage.Frame.swap_needed()=fabio.edfimage.Frame-class.html#swap_needed,Method fabio.edfimage.edfimage.swap_needed()=fabio.edfimage.edfimage-class.html#swap_ [...]
-fabio.edfimage.Frame.swap_needed
-fabio.edfimage.edfimage.swap_needed" class="py-name" href="#" onclick="return doclink('link-170', 'swap_needed', 'link-170');">swap_needed</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt id="link-171" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-171', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">rawData</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-172" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return [...]
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> <tt id="link-174" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-174', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">rawData</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-175" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return [...]
-<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_data</tt> <tt class="py-op">=</tt> <tt id="link-177" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-177', 'data', 'link-40');">data</a></tt> </tt>
-<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> <tt class="py-comment">#no need to keep garbage in memory</tt> </tt>
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-178" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-178', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-op">=</tt> <tt id="link-179" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-179', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> </tt>
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-180" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-180', 'data', 'link-40');">data</a></tt> </tt>
-</div><a name="Frame.setData"></a><div id="Frame.setData-def"><a name="L295"></a><tt class="py-lineno">295</tt> <a class="py-toggle" href="#" id="Frame.setData-toggle" onclick="return toggle('Frame.setData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.Frame-class.html#setData">setData</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">npa</tt><tt class="py-op">=</tt><tt clas [...]
-</div><div id="Frame.setData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Frame.setData-expanded"><a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-docstring">"""Setter for data in edf frame"""</tt> </tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_data</tt> <tt class="py-op">=</tt> <tt class="py-name">npa</tt> </tt>
-</div><a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt id="link-181" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-181', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-182" class="py-name" targets="Method fabio.TiffIO.TiffIO.getData()=fabio.TiffIO.TiffIO-class.html#getData,Method fabio.edfimage.Frame.getData()=fabio.edfimage.Frame-class.html#getData,Method fabio.edfimage.edfimage.getData()=fabio.edfimage.edfimage-class.html#getData"><a [...]
-fabio.edfimage.Frame.getData
-fabio.edfimage.edfimage.getData" class="py-name" href="#" onclick="return doclink('link-182', 'getData', 'link-182');">getData</a></tt><tt class="py-op">,</tt> <tt id="link-183" class="py-name" targets="Method fabio.OXDimage.Section.setData()=fabio.OXDimage.Section-class.html#setData,Method fabio.edfimage.Frame.setData()=fabio.edfimage.Frame-class.html#setData,Method fabio.edfimage.edfimage.setData()=fabio.edfimage.edfimage-class.html#setData"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-183', 'setData', 'link-183');">setData</a></tt><tt class="py-op">,</tt> <tt class="py-string">"property: (edf)frame.data, uncompress the datablock when needed"</tt><tt class="py-op">)</tt> </tt>
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> </tt>
-<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> </tt>
-<a name="Frame.getEdfBlock"></a><div id="Frame.getEdfBlock-def"><a name="L301"></a><tt class="py-lineno">301</tt> <a class="py-toggle" href="#" id="Frame.getEdfBlock-toggle" onclick="return toggle('Frame.getEdfBlock');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.Frame-class.html#getEdfBlock">getEdfBlock</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">force_type</tt><tt cla [...]
-</div><div id="Frame.getEdfBlock-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Frame.getEdfBlock-expanded"><a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"><tt class="py-docstring"> @param force_type: type of the dataset to be enforced like "float64" or "uint16"</tt> </tt>
-<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"><tt class="py-docstring"> @type force_type: string or numpy.dtype</tt> </tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"><tt class="py-docstring"> @param fit2dMode: enforce compatibility with fit2d and starts countimg number of images at 1 </tt> </tt>
-<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"><tt class="py-docstring"> @type fit2dMode: boolean</tt> </tt>
-<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"><tt class="py-docstring"> @return: ascii header block </tt> </tt>
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: python string with the concatenation of the ascii header and the binary data block</tt> </tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">force_type</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> <tt id="link-184" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-184', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-185" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-185', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">force_type</tt><tt class="py-op">)</tt> </tt>
-<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt id="link-186" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-186', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-187" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-187', 'data', 'link-40');">data</a></tt> </tt>
-<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt class="py-name">fit2dMode</tt> <tt class="py-op">=</tt> <tt class="py-name">bool</tt><tt class="py-op">(</tt><tt class="py-name">fit2dMode</tt><tt class="py-op">)</tt> </tt>
-<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-188" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-188', 'key', 'link-24');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-189" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-189', [...]
-<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-name">KEY</tt> <tt class="py-op">=</tt> <tt id="link-190" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-190', 'key', 'link-24');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">upper</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">KEY</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-191" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-191', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-192" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-192', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">[</tt><tt class="py-name">KEY</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-193" class="py-name"><a title="fabio.fabioutils.ke [...]
-<a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-194" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-194', 'key', 'link-24');">key</a></tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href= [...]
-<a name="L320"></a><tt class="py-lineno">320</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-196" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-196', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-197" class="py-name"><a title="fabio.fabioutils.key" class="py-name" h [...]
-<a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> </tt>
-<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"> <tt id="link-198" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-198', 'header', 'link-15');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-199" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-199', 'header', 'link-15');" [...]
-<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"> <tt id="link-200" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-200', 'header_keys', 'link-19');">header_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-201" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-201', 'h [...]
-<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt id="link-202" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-202', 'capsHeader', 'link-32');">capsHeader</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-203" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-203', 'capsH [...]
-<a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> </tt>
-<a name="L326"></a><tt class="py-lineno">326</tt> <tt class="py-line"> <tt class="py-name">listHeader</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"{\n"</tt><tt class="py-op">]</tt> </tt>
-<a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"><tt class="py-comment"># First of all clean up the headers:</tt> </tt>
-<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-204" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-204', 'i', 'link-117');">i</a></tt> <tt class="py-keyword">in</tt> <tt id="link-205" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-205', 'capsHeader', 'link-32');">capsHeader</a></tt><tt clas [...]
-<a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"DIM_"</tt> <tt class="py-keyword">in</tt> <tt id="link-206" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-206', 'i', 'link-117');">i</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L330"></a><tt class="py-lineno">330</tt> <tt class="py-line"> <tt id="link-207" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-207', 'header', 'link-15');">header</a></tt><tt class="py-op">.</tt><tt id="link-208" class="py-name" targets="Method fabio.cbfimage.CIF.pop()=fabio.cbfimage.CIF-class.html#pop"><a title="fabio.cbfimage.CIF.pop" class="py-name" href="#" onclick="return doclink('link-208', ' [...]
-<a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"> <tt id="link-211" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-211', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt id="link-212" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-2 [...]
-<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">KEY</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">"SIZE"</tt><tt class="py-op">,</tt> <tt class="py-string">"EDF_BINARYSIZE"</tt><tt class="py-op">,</tt> <tt class="py-string">"EDF_HEADERSIZE"</tt><tt class="py-op">,</tt> <tt class="py-string">"BYTEORDER"</tt><tt class="py-op">,</tt> <tt class="py-string">"DATATYPE"</tt><tt [...]
-<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">KEY</tt> <tt class="py-keyword">in</tt> <tt id="link-214" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-214', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> <tt id="link-215" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-215', 'header', 'link-15');">header</a></tt><tt class="py-op">.</tt><tt id="link-216" class="py-name"><a title="fabio.cbfimage.CIF.pop" class="py-name" href="#" onclick="return doclink('link-216', 'pop', 'link-208');">pop</a></tt><tt class="py-op">(</tt><tt id="link-217" cl [...]
-<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"> <tt id="link-218" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-218', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt id="link-219" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-2 [...]
-<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"EDF_DATABLOCKID"</tt> <tt class="py-keyword">in</tt> <tt id="link-220" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-220', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> <tt id="link-221" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-221', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt id="link-222" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-222', [...]
-<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"> <tt class="py-comment">#but do not remove the value from dict, instead reset the key ...</tt> </tt>
-<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-223" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-223', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">[</tt><tt class="py-string">"EDF_DATABLOCKID"</tt><tt class="py-op">]</tt> <tt class="py-op">!=</tt> <tt class="py-string">"EDF_DataBlockID"</tt><tt class="py-op">:</tt> </tt>
-<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> <tt id="link-224" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-224', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"EDF_DataBlockID"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-225" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="re [...]
-<a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> <tt id="link-228" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-228', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">[</tt><tt class="py-string">"EDF_DATABLOCKID"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"EDF_DataBlockID"</tt> </tt>
-<a name="L342"></a><tt class="py-lineno">342</tt> <tt class="py-line"> </tt>
-<a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"><tt class="py-comment"># Then update static headers freshly deleted</tt> </tt>
-<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"> <tt id="link-229" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-229', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"Size"</tt><tt class="py-op">)</tt> </tt>
-<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"> <tt id="link-230" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-230', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"Size"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-231" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('li [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-232', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt id="link-233" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-233', 'tostring', 'link-111');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> <tt id="link-234" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-234', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"HeaderID"</tt><tt class="py-op">)</tt> </tt>
-<a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"> <tt id="link-235" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-235', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"HeaderID"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"EH:%06d:000000:000000"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</t [...]
-<a name="L348"></a><tt class="py-lineno">348</tt> <tt class="py-line"> <tt id="link-236" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-236', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"Image"</tt><tt class="py-op">)</tt> </tt>
-<a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"> <tt id="link-237" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-237', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"Image"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-238" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.ht [...]
-str" class="py-name" href="#" onclick="return doclink('link-238', 'str', 'link-238');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">iFrame</tt> <tt class="py-op">+</tt> <tt class="py-name">fit2dMode</tt><tt class="py-op">)</tt> </tt>
-<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"> </tt>
-<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"> <tt id="link-239" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-239', 'dims', 'link-41');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-name">list</tt><tt class="py-op">(</tt><tt id="link-240" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-240', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
-<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"> <tt class="py-name">nbdim</tt> <tt class="py-op">=</tt> <tt id="link-241" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-241', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt id="link-242" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-242', 'dims', 'link-41');">dims [...]
-<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-243" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-243', 'i', 'link-117');">i</a></tt> <tt class="py-keyword">in</tt> <tt id="link-244" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-244', 'dims', 'link-41');">dims</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"> <tt id="link-245" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-245', 'key', 'link-24');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"Dim_%i"</tt> <tt class="py-op">%</tt> <tt class="py-name">nbdim</tt> </tt>
-<a name="L355"></a><tt class="py-lineno">355</tt> <tt class="py-line"> <tt id="link-246" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-246', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt id="link-247" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-247', 'key', 'link-24');">key</a></tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> < [...]
-<a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"> <tt id="link-249" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-249', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt id="link-250" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href= [...]
-<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"> <tt class="py-name">nbdim</tt> <tt class="py-op">-=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"> <tt id="link-251" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-251', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"DataType"</tt><tt class="py-op">)</tt> </tt>
-<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> <tt id="link-252" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-252', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"DataType"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-253" class="py-name"><a title="fabio.edfimage.NUMPY_EDF_DTYPE" class="py-name" href="#" onclick="return doclink('l [...]
-str" class="py-name" href="#" onclick="return doclink('link-254', 'str', 'link-238');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">(</tt><tt id="link-255" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-255', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"> <tt id="link-256" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-256', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"ByteOrder"</tt><tt class="py-op">)</tt> </tt>
-<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">little_endian</tt><tt class="py-op">:</tt> </tt>
-<a name="L362"></a><tt class="py-lineno">362</tt> <tt class="py-line"> <tt id="link-257" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-257', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"ByteOrder"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"LowByteFirst"</tt> </tt>
-<a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt id="link-258" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-258', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"ByteOrder"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"HighByteFirst"</tt> </tt>
-<a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> <tt class="py-name">approxHeaderSize</tt> <tt class="py-op">=</tt> <tt class="py-number">100</tt> </tt>
-<a name="L366"></a><tt class="py-lineno">366</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-259" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-259', 'key', 'link-24');">key</a></tt> <tt class="py-keyword">in</tt> <tt id="link-260" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-260', 'header', 'link-15');">header</a></tt><tt class="py-o [...]
-<a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"> <tt class="py-name">approxHeaderSize</tt> <tt class="py-op">+=</tt> <tt class="py-number">7</tt> <tt class="py-op">+</tt> <tt id="link-261" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-261', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt id="link-262" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" [...]
-str" class="py-name" href="#" onclick="return doclink('link-264', 'str', 'link-238');">str</a></tt><tt class="py-op">(</tt><tt id="link-265" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-265', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt id="link-266" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-266', 'key', 'link-24');">key</a></tt><tt class=" [...]
-<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"> <tt class="py-name">approxHeaderSize</tt> <tt class="py-op">=</tt> <tt id="link-267" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick="return doclink('link-267', 'BLOCKSIZE', 'link-10');">BLOCKSIZE</a></tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-name">approxHeaderSize</tt> <tt class="py-op">//</tt> <tt id="link-268" class="py-name"><a title="fabio.edf [...]
-<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"> <tt id="link-269" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-269', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"EDF_HeaderSize"</tt><tt class="py-op">)</tt> </tt>
-<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"> <tt id="link-270" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-270', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"EDF_HeaderSize"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-271" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-271', 'str', 'link-238');">str</a></tt><tt class="py-op">(</tt><tt id="link-272" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick="return doclink('link-272', 'BLOCKSIZE', 'link-10');">BLOCKSIZE</a></tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-name">approxHeaderSize</tt> <tt class="py-op">//</tt> <tt id="link-273" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class= [...]
-<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"> <tt id="link-274" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-274', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"EDF_BinarySize"</tt><tt class="py-op">)</tt> </tt>
-<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt id="link-275" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-275', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"EDF_BinarySize"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-276" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return d [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-277', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt id="link-278" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-278', 'tostring', 'link-111');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> <tt id="link-279" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-279', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">insert</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-string">"EDF_DataBlockID"</tt><tt class="py-op">)</tt> </tt>
-<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-string">"EDF_DataBlockID"</tt> <tt class="py-keyword">in</tt> <tt id="link-280" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-280', 'header', 'link-15');">header</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> <tt id="link-281" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-281', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"EDF_DataBlockID"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">"%i.Image.Psd"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self< [...]
-<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt class="py-name">preciseSize</tt> <tt class="py-op">=</tt> <tt class="py-number">4</tt> <tt class="py-comment">#2 before {\n 2 after }\n</tt> </tt>
-<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-282" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-282', 'key', 'link-24');">key</a></tt> <tt class="py-keyword">in</tt> <tt id="link-283" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-283', 'header_keys', 'link-19');">header_keys</a></tt> [...]
-<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> <tt class="py-comment">#Escape keys or values that are no ascii</tt> </tt>
-<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"> <tt class="py-name">strKey</tt> <tt class="py-op">=</tt> <tt id="link-284" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-284', 'str', 'link-238');">str</a></tt><tt class="py-op">(</tt><tt id="link-285" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-285', 'key', 'link-24');">key</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-286" class="py-name"><a title="fabio.cbfimage.CIF.isAscii
-fabio.fabioutils.isAscii" class="py-name" href="#" onclick="return doclink('link-286', 'isAscii', 'link-4');">isAscii</a></tt><tt class="py-op">(</tt><tt class="py-name">strKey</tt><tt class="py-op">,</tt> <tt class="py-name">listExcluded</tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-string">"}"</tt><tt class="py-op">,</tt> <tt class="py-string">"{"</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> <tt id="link-287" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-287', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Non ascii key %s, skipping"</tt> <tt class="py-op">%</tt> <tt class="py-name">strKey</tt><tt class="py-op">)</tt> </tt>
-<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L383"></a><tt class="py-lineno">383</tt> <tt class="py-line"> <tt class="py-name">strValue</tt> <tt class="py-op">=</tt> <tt id="link-288" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-288', 'str', 'link-238');">str</a></tt><tt class="py-op">(</tt><tt id="link-289" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-289', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt id="link-290" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-290', 'key', 'link-24');">key</a></tt><tt class=" [...]
-<a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt id="link-291" class="py-name"><a title="fabio.cbfimage.CIF.isAscii
-fabio.fabioutils.isAscii" class="py-name" href="#" onclick="return doclink('link-291', 'isAscii', 'link-4');">isAscii</a></tt><tt class="py-op">(</tt><tt class="py-name">strValue</tt><tt class="py-op">,</tt> <tt class="py-name">listExcluded</tt><tt class="py-op">=</tt><tt class="py-op">[</tt><tt class="py-string">"}"</tt><tt class="py-op">,</tt> <tt class="py-string">"{"</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"> <tt id="link-292" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-292', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Non ascii value %s, skipping"</tt> <tt class="py-op">%</tt> <tt class="py-name">strValue</tt><tt class="py-op">)</tt> </tt>
-<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">strKey</tt> <tt class="py-op">+</tt> <tt class="py-string">" = "</tt> <tt class="py-op">+</tt> <tt class="py-name">strValue</tt> <tt class="py-op">+</tt> <tt class="py-string">" ;\n"</tt> </tt>
-<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"> <tt class="py-name">preciseSize</tt> <tt class="py-op">+=</tt> <tt id="link-293" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-293', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
-<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> <tt class="py-name">listHeader</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
-<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"><tt class="py-comment"># print type(line), line</tt> </tt>
-<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">preciseSize</tt> <tt class="py-op">></tt> <tt class="py-name">approxHeaderSize</tt><tt class="py-op">:</tt> </tt>
-<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt id="link-294" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-294', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"I expected the header block only at %s in fact it is %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">approxHeaderSize</tt><tt class="py-op">,</tt> <tt class="py-name">preciseSize</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">idx</tt><tt class="py-op">,</tt> <tt class="py-name">line</tt> <tt class="py-keyword">in</tt> <tt class="py-name">enumerate</tt><tt class="py-op">(</tt><tt class="py-name">listHeader</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-string">"EDF_HeaderSize"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> <tt class="py-name">headerSize</tt> <tt class="py-op">=</tt> <tt id="link-295" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick="return doclink('link-295', 'BLOCKSIZE', 'link-10');">BLOCKSIZE</a></tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-name">preciseSize</tt> <tt class="py-op">//</tt> <tt id="link-296" class="py-name"><a title="fabio.ed [...]
-<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> <tt class="py-name">newline</tt> <tt class="py-op">=</tt> <tt class="py-string">"EDF_HeaderSize = %s ;\n"</tt> <tt class="py-op">%</tt> <tt class="py-name">headerSize</tt> </tt>
-<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"> <tt class="py-name">delta</tt> <tt class="py-op">=</tt> <tt id="link-297" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-297', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">newline</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt id="link-298" class="py-name"><a title="fabio.file_series.file [...]
-<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">preciseSize</tt> <tt class="py-op">//</tt> <tt id="link-299" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick="return doclink('link-299', 'BLOCKSIZE', 'link-10');">BLOCKSIZE</a></tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt class [...]
-<a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"> <tt class="py-name">headerSize</tt> <tt class="py-op">=</tt> <tt id="link-301" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick="return doclink('link-301', 'BLOCKSIZE', 'link-10');">BLOCKSIZE</a></tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">preciseSize</tt> <tt class="py-op">+</tt> <tt class="py-name">delta [...]
-<a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"> <tt class="py-name">newline</tt> <tt class="py-op">=</tt> <tt class="py-string">"EDF_HeaderSize = %s ;\n"</tt> <tt class="py-op">%</tt> <tt class="py-name">headerSize</tt> </tt>
-<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"> <tt class="py-name">preciseSize</tt> <tt class="py-op">=</tt> <tt class="py-name">preciseSize</tt> <tt class="py-op">+</tt> <tt class="py-name">delta</tt> </tt>
-<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"> <tt class="py-name">listHeader</tt><tt class="py-op">[</tt><tt class="py-name">idx</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">newline</tt> </tt>
-<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line"> <tt class="py-name">headerSize</tt> <tt class="py-op">=</tt> <tt class="py-name">approxHeaderSize</tt> </tt>
-<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"> <tt class="py-name">listHeader</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">" "</tt><tt class="py-op">*</tt><tt class="py-op">(</tt><tt class="py-name">headerSize</tt> <tt class="py-op">-</tt> <tt class="py-name">preciseSize</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"}\n"</tt><tt class="py-op">)</tt> </tt>
-<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-string">""</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">listHeader</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt id="link-303" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-303', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt id="link-304" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-304', 'tostring', 'link-111');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"> </tt>
-<a name="edfimage"></a><div id="edfimage-def"><a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"> </tt>
-<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> </tt>
-<a name="L411"></a><tt class="py-lineno">411</tt> <a class="py-toggle" href="#" id="edfimage-toggle" onclick="return toggle('edfimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html">edfimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="edfimage-expanded"><a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"> <tt class="py-docstring">""" Read and try to write the ESRF edf data format """</tt> </tt>
-<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"> </tt>
-<a name="edfimage.__init__"></a><div id="edfimage.__init__-def"><a name="L414"></a><tt class="py-lineno">414</tt> <a class="py-toggle" href="#" id="edfimage.__init__-toggle" onclick="return toggle('edfimage.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">data</tt><tt class="py-op [...]
-</div><div id="edfimage.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.__init__-expanded"><a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"> <tt class="py-name">dim</tt> <tt class="py-op">=</tt> <tt id="link-305" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-305', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt id="link-306" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-306', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
-<a name="L418"></a><tt class="py-lineno">418</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> <tt class="py-comment">#IGNORE:W0703</tt> </tt>
-<a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> <tt id="link-307" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-307', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Data don't look like a numpy array (%s), resetting all!!"</tt> <tt class="py-op">%</tt> <tt class="py-name">error</tt><tt class="py-op">)</tt> </tt>
-<a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line"> <tt id="link-308" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-308', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"> <tt class="py-name">dim</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> <tt id="link-309" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-309', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-310" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage._ [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-310', '__init__', 'link-310');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-311" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-311', 'data', 'link-40');">data</a></tt><tt class="py-op">,</tt> <tt id="link-312" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-312', 'header', 'link-15');">header</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">dim</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
-<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"> <tt id="link-313" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-313', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-314" class="py-name"><a title="fabio.OXDimage.Section.__init__
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-314', '__init__', 'link-310');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-315" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-315', 'data', 'link-40');">data</a></tt><tt class="py-op">,</tt> <tt id="link-316" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-316', 'header', 'link-15');">header</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">dim</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt> <tt class="py-op">:</tt> </tt>
-<a name="L426"></a><tt class="py-lineno">426</tt> <tt class="py-line"> <tt id="link-317" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-317', 'data', 'link-40');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt id="link-318" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-318', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt id="link- [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-319', 'data', 'link-40');">data</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"> <tt id="link-320" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-320', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-321" class="py-name"><a title="fabio.OXDimage.Section.__init__
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-321', '__init__', 'link-310');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-322" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-322', 'data', 'link-40');">data</a></tt><tt class="py-op">,</tt> <tt id="link-323" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-323', 'header', 'link-15');">header</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">dim</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt> <tt class="py-op">:</tt> </tt>
-<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"> <tt id="link-324" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-324', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-325" class="py-name"><a title="fabio.OXDimage.Section.__init__
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-325', '__init__', 'link-310');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-326" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-326', 'data', 'link-40');">data</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt id="link-327" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-327', 'header', 'link-15');">header</ [...]
-<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">dim</tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt> <tt class="py-op">:</tt> </tt>
-<a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"> <tt id="link-328" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-328', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-329" class="py-name"><a title="fabio.OXDimage.Section.__init__
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-329', '__init__', 'link-310');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-330" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-330', 'data', 'link-40');">data</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt id="link-331" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="retur [...]
-<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">dim</tt> <tt class="py-op">==</tt> <tt class="py-number">5</tt> <tt class="py-op">:</tt> </tt>
-<a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"> <tt id="link-332" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-332', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-333" class="py-name"><a title="fabio.OXDimage.Section.__init__
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-333', '__init__', 'link-310');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-334" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-334', 'data', 'link-40');">data</a></tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt id="link-335" class="py-name"><a title="fabio.edfimage.edf [...]
-<a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"> </tt>
-<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">frames</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> <tt class="py-name">frame</tt> <tt class="py-op">=</tt> <tt id="link-336" class="py-name" targets="Class fabio.edfimage.Frame=fabio.edfimage.Frame-class.html"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-336', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt id="link-337" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-337', 'data', 'link-40');">data</a></tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-338" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-338', 'data', 'link-40');">data</a></tt><tt class="py-op">,</tt> <tt id="link-339" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-339', 'header', 'link-15');">header</a></tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-340" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name [...]
-<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> <tt id="link-341" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-341', 'header_keys', 'link-19');">header_keys</a></tt><tt class="py-op">=</tt><tt id="link-342" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-342', 'header_keys', 'link-19');">header_keys [...]
-<a name="L438"></a><tt class="py-lineno">438</tt> <tt class="py-line"> <tt class="py-name">number</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">)</tt> </tt>
-<a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">frame</tt><tt class="py-op">]</tt> </tt>
-<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-name">frames</tt> </tt>
-</div><a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"> </tt>
-<a name="L443"></a><tt class="py-lineno">443</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="edfimage.checkHeader"></a><div id="edfimage.checkHeader-def"><a name="L444"></a><tt class="py-lineno">444</tt> <a class="py-toggle" href="#" id="edfimage.checkHeader-toggle" onclick="return toggle('edfimage.checkHeader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#checkHeader">checkHeader</a><tt class="py-op">(</tt><tt class="py-param">header</tt><tt class="py-op">=</tt><tt class="py-name">None</t [...]
-</div><div id="edfimage.checkHeader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.checkHeader-expanded"><a name="L445"></a><tt class="py-lineno">445</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L446"></a><tt class="py-lineno">446</tt> <tt class="py-line"><tt class="py-docstring"> Empty for fabioimage but may be populated by others classes</tt> </tt>
-<a name="L447"></a><tt class="py-lineno">447</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L448"></a><tt class="py-lineno">448</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt id="link-343" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-343', 'header', 'link-15');">header</a></tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-name">types</tt><tt class="py-op">.</tt><tt class="py-name">DictionaryType</tt><tt class= [...]
-<a name="L449"></a><tt class="py-lineno">449</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L450"></a><tt class="py-lineno">450</tt> <tt class="py-line"> <tt class="py-name">new</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L451"></a><tt class="py-lineno">451</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-344" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-344', 'key', 'link-24');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">value</tt> <tt class="py-keyword">in</tt> <tt id="link-345" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-345' [...]
-<a name="L452"></a><tt class="py-lineno">452</tt> <tt class="py-line"> <tt class="py-name">new</tt><tt class="py-op">[</tt><tt id="link-346" class="py-name"><a title="fabio.fabioutils.toAscii" class="py-name" href="#" onclick="return doclink('link-346', 'toAscii', 'link-5');">toAscii</a></tt><tt class="py-op">(</tt><tt id="link-347" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-347', 'key', 'link-24');">key</a></tt><tt [...]
-<a name="L453"></a><tt class="py-lineno">453</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">new</tt> </tt>
-</div><a name="L454"></a><tt class="py-lineno">454</tt> <tt class="py-line"> </tt>
-<a name="L455"></a><tt class="py-lineno">455</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="edfimage._readHeaderBlock"></a><div id="edfimage._readHeaderBlock-def"><a name="L456"></a><tt class="py-lineno">456</tt> <a class="py-toggle" href="#" id="edfimage._readHeaderBlock-toggle" onclick="return toggle('edfimage._readHeaderBlock');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#_readHeaderBlock">_readHeaderBlock</a><tt class="py-op">(</tt><tt class="py-param">infile</tt><tt class="py-op">)</ [...]
-</div><div id="edfimage._readHeaderBlock-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage._readHeaderBlock-expanded"><a name="L457"></a><tt class="py-lineno">457</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L458"></a><tt class="py-lineno">458</tt> <tt class="py-line"><tt class="py-docstring"> Read in a header in some EDF format from an already open file</tt> </tt>
-<a name="L459"></a><tt class="py-lineno">459</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L460"></a><tt class="py-lineno">460</tt> <tt class="py-line"><tt class="py-docstring"> @param infile: file object open in read mode</tt> </tt>
-<a name="L461"></a><tt class="py-lineno">461</tt> <tt class="py-line"><tt class="py-docstring"> @return: string (or None if no header was found. </tt> </tt>
-<a name="L462"></a><tt class="py-lineno">462</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L463"></a><tt class="py-lineno">463</tt> <tt class="py-line"> </tt>
-<a name="L464"></a><tt class="py-lineno">464</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-349" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDi [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-349', 'read', 'link-349');">read</a></tt><tt class="py-op">(</tt><tt id="link-350" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick="return doclink('link-350', 'BLOCKSIZE', 'link-10');">BLOCKSIZE</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L465"></a><tt class="py-lineno">465</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-351" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-351', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">)</tt> <tt class="py-op"><</tt> <tt id="link-352" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick [...]
-<a name="L466"></a><tt class="py-lineno">466</tt> <tt class="py-line"> <tt id="link-353" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-353', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Under-short header: only %i bytes in %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-354" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-354', 'len', 'link-109');">len</a></tt><t [...]
-<a name="L467"></a><tt class="py-lineno">467</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
-<a name="L468"></a><tt class="py-lineno">468</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"{"</tt><tt class="py-op">)</tt> <tt class="py-op"><</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> </tt>
-<a name="L469"></a><tt class="py-lineno">469</tt> <tt class="py-line"> <tt class="py-comment"># This does not look like an edf file</tt> </tt>
-<a name="L470"></a><tt class="py-lineno">470</tt> <tt class="py-line"> <tt id="link-355" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-355', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"no opening {. Corrupt header of EDF file %s"</tt> <tt class="py-op">%</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L471"></a><tt class="py-lineno">471</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
-<a name="L472"></a><tt class="py-lineno">472</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-string">'}'</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">block</tt><tt class="py-op">:</tt> </tt>
-<a name="L473"></a><tt class="py-lineno">473</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt> <tt class="py-op">+</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-356" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-356', 'read', 'link-349');">read</a></tt><tt class="py-op">(</tt><tt id="link-357" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onclick="return doclink('link-357', 'BLOCKSIZE', 'link-10');">BLOCKSIZE</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L474"></a><tt class="py-lineno">474</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-358" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-358', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt id="link-359" class="py-name"><a title="fabio.edfimage.BLOCKSIZE" class="py-name" href="#" onc [...]
-<a name="L475"></a><tt class="py-lineno">475</tt> <tt class="py-line"> <tt id="link-360" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-360', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Runaway header in EDF file"</tt><tt class="py-op">)</tt> </tt>
-<a name="L476"></a><tt class="py-lineno">476</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
-<a name="L477"></a><tt class="py-lineno">477</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"{"</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
-<a name="L478"></a><tt class="py-lineno">478</tt> <tt class="py-line"> <tt class="py-name">end</tt> <tt class="py-op">=</tt> <tt class="py-name">block</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"}"</tt><tt class="py-op">)</tt> </tt>
-<a name="L479"></a><tt class="py-lineno">479</tt> <tt class="py-line"> </tt>
-<a name="L480"></a><tt class="py-lineno">480</tt> <tt class="py-line"> <tt class="py-comment"># Now it is essential to go to the start of the binary part</tt> </tt>
-<a name="L481"></a><tt class="py-lineno">481</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-name">end</tt><tt class="py-op">:</tt> <tt class="py-name">end</tt> <tt class="py-op">+</tt> <tt class="py-number">3</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"}\r\n"</tt><tt class="py-op">:</tt> </tt>
-<a name="L482"></a><tt class="py-lineno">482</tt> <tt class="py-line"> <tt class="py-name">offset</tt> <tt class="py-op">=</tt> <tt class="py-name">end</tt> <tt class="py-op">+</tt> <tt class="py-number">3</tt> <tt class="py-op">-</tt> <tt id="link-361" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-361', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op" [...]
-<a name="L483"></a><tt class="py-lineno">483</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-name">end</tt><tt class="py-op">:</tt> <tt class="py-name">end</tt> <tt class="py-op">+</tt> <tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"}\n"</tt><tt class="py-op">:</tt> </tt>
-<a name="L484"></a><tt class="py-lineno">484</tt> <tt class="py-line"> <tt class="py-name">offset</tt> <tt class="py-op">=</tt> <tt class="py-name">end</tt> <tt class="py-op">+</tt> <tt class="py-number">2</tt> <tt class="py-op">-</tt> <tt id="link-362" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-362', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op" [...]
-<a name="L485"></a><tt class="py-lineno">485</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L486"></a><tt class="py-lineno">486</tt> <tt class="py-line"> <tt id="link-363" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-363', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to locate start of the binary section"</tt><tt class="py-op">)</tt> </tt>
-<a name="L487"></a><tt class="py-lineno">487</tt> <tt class="py-line"> <tt class="py-name">offset</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L488"></a><tt class="py-lineno">488</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">offset</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L489"></a><tt class="py-lineno">489</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L490"></a><tt class="py-lineno">490</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">offset</tt><tt class="py-op">,</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">SEEK_CUR</tt><tt class="py-op">)</tt> </tt>
-<a name="L491"></a><tt class="py-lineno">491</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">TypeError</tt><tt class="py-op">:</tt> <tt class="py-comment">#JK20110407 bugfix specific to MacOSX</tt> </tt>
-<a name="L492"></a><tt class="py-lineno">492</tt> <tt class="py-line"> <tt class="py-name">pos</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">tell</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L493"></a><tt class="py-lineno">493</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">pos</tt> <tt class="py-op">+</tt> <tt class="py-name">offset</tt><tt class="py-op">)</tt> </tt>
-<a name="L494"></a><tt class="py-lineno">494</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">block</tt><tt class="py-op">[</tt><tt class="py-name">start</tt><tt class="py-op">:</tt><tt class="py-name">end</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L495"></a><tt class="py-lineno">495</tt> <tt class="py-line"> </tt>
-<a name="L496"></a><tt class="py-lineno">496</tt> <tt class="py-line"> </tt>
-<a name="edfimage._readheader"></a><div id="edfimage._readheader-def"><a name="L497"></a><tt class="py-lineno">497</tt> <a class="py-toggle" href="#" id="edfimage._readheader-toggle" onclick="return toggle('edfimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">infile< [...]
-</div><div id="edfimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage._readheader-expanded"><a name="L498"></a><tt class="py-lineno">498</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L499"></a><tt class="py-lineno">499</tt> <tt class="py-line"><tt class="py-docstring"> Read all headers in a file and populate self.header</tt> </tt>
-<a name="L500"></a><tt class="py-lineno">500</tt> <tt class="py-line"><tt class="py-docstring"> data is not yet populated</tt> </tt>
-<a name="L501"></a><tt class="py-lineno">501</tt> <tt class="py-line"><tt class="py-docstring"> @type infile: file object open in read mode</tt> </tt>
-<a name="L502"></a><tt class="py-lineno">502</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L503"></a><tt class="py-lineno">503</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L504"></a><tt class="py-lineno">504</tt> <tt class="py-line"> </tt>
-<a name="L505"></a><tt class="py-lineno">505</tt> <tt class="py-line"> <tt class="py-name">bContinue</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L506"></a><tt class="py-lineno">506</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">bContinue</tt><tt class="py-op">:</tt> </tt>
-<a name="L507"></a><tt class="py-lineno">507</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-364" class="py-name" targets="Static Method fabio.edfimage.edfimage._readHeaderBlock()=fabio.edfimage.edfimage-class.html#_readHeaderBlock"><a title="fabio.edfimage.edfimage._readHeaderBlock" class="py-name" href="#" onclick="return doclink('link-364', '_readHeaderBlock', 'link-364');"> [...]
-<a name="L508"></a><tt class="py-lineno">508</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">block</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L509"></a><tt class="py-lineno">509</tt> <tt class="py-line"> <tt class="py-name">bContinue</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L510"></a><tt class="py-lineno">510</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L511"></a><tt class="py-lineno">511</tt> <tt class="py-line"> <tt class="py-name">frame</tt> <tt class="py-op">=</tt> <tt id="link-365" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-365', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-name">number</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-366" class="py-name" targets="Variable fabio [...]
-<a name="L512"></a><tt class="py-lineno">512</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">frame</tt><tt class="py-op">)</tt> </tt>
-<a name="L513"></a><tt class="py-lineno">513</tt> <tt class="py-line"> <tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">frame</tt><tt class="py-op">.</tt><tt id="link-367" class="py-name" targets="Method fabio.edfimage.Frame.parseheader()=fabio.edfimage.Frame-class.html#parseheader"><a title="fabio.edfimage.Frame.parseheader" class="py-name" href="#" onclick="return doclink('link-367', 'parseheader', 'link-367');">parseheader</a></tt><tt class="py-op [...]
-<a name="L514"></a><tt class="py-lineno">514</tt> <tt class="py-line"> <tt class="py-name">frame</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-368" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-368', 'read', 'link-349');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">size</tt><tt class="py-op">)</tt> </tt>
-<a name="L515"></a><tt class="py-lineno">515</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-369" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-369', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">frame</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-name">size</tt><tt class="py-o [...]
-<a name="L516"></a><tt class="py-lineno">516</tt> <tt class="py-line"> <tt id="link-370" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-370', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Non complete datablock: got %s, expected %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt id="link-371" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-371', 'len', 'link-109');">len</a>< [...]
-<a name="L517"></a><tt class="py-lineno">517</tt> <tt class="py-line"> <tt class="py-name">bContinue</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L518"></a><tt class="py-lineno">518</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L519"></a><tt class="py-lineno">519</tt> <tt class="py-line"> </tt>
-<a name="L520"></a><tt class="py-lineno">520</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-372" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-372', 'i', 'link-117');">i</a></tt><tt class="py-op">,</tt> <tt class="py-name">frame</tt> <tt class="py-keyword">in</tt> <tt class="py-name">enumerate</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames< [...]
-<a name="L521"></a><tt class="py-lineno">521</tt> <tt class="py-line"> <tt class="py-name">missing</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L522"></a><tt class="py-lineno">522</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">item</tt> <tt class="py-keyword">in</tt> <tt id="link-373" class="py-name"><a title="fabio.cbfimage.MINIMUM_KEYS
-fabio.edfimage.MINIMUM_KEYS
-fabio.kcdimage.MINIMUM_KEYS" class="py-name" href="#" onclick="return doclink('link-373', 'MINIMUM_KEYS', 'link-13');">MINIMUM_KEYS</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L523"></a><tt class="py-lineno">523</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">item</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">frame</tt><tt class="py-op">.</tt><tt id="link-374" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-374', 'capsHeader', 'link-32');">capsHeader</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L524"></a><tt class="py-lineno">524</tt> <tt class="py-line"> <tt class="py-name">missing</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">item</tt><tt class="py-op">)</tt> </tt>
-<a name="L525"></a><tt class="py-lineno">525</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-375" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-375', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">missing</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L526"></a><tt class="py-lineno">526</tt> <tt class="py-line"> <tt id="link-376" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-376', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">info</tt><tt class="py-op">(</tt><tt class="py-string">"EDF file %s frame %i misses mandatory keys: %s "</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt id="link-377" class="py-name"><a title="fabio.fabiout [...]
-<a name="L527"></a><tt class="py-lineno">527</tt> <tt class="py-line"> </tt>
-<a name="L528"></a><tt class="py-lineno">528</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-</div><a name="L529"></a><tt class="py-lineno">529</tt> <tt class="py-line"> </tt>
-<a name="L530"></a><tt class="py-lineno">530</tt> <tt class="py-line"> </tt>
-<a name="edfimage.read"></a><div id="edfimage.read-def"><a name="L531"></a><tt class="py-lineno">531</tt> <a class="py-toggle" href="#" id="edfimage.read-toggle" onclick="return toggle('edfimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py- [...]
-</div><div id="edfimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.read-expanded"><a name="L532"></a><tt class="py-lineno">532</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L533"></a><tt class="py-lineno">533</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and</tt> </tt>
-<a name="L534"></a><tt class="py-lineno">534</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data</tt> </tt>
-<a name="L535"></a><tt class="py-lineno">535</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L536"></a><tt class="py-lineno">536</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-378" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-378', 'resetvals', 'link-378');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L537"></a><tt class="py-lineno">537</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L538"></a><tt class="py-lineno">538</tt> <tt class="py-line"> </tt>
-<a name="L539"></a><tt class="py-lineno">539</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-379" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-379', '_open', 'link-379');">_open</a></tt><tt class="py-op">(</tt><tt [...]
-<a name="L540"></a><tt class="py-lineno">540</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-380" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._r [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-380', '_readheader', 'link-380');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L541"></a><tt class="py-lineno">541</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">frame</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L542"></a><tt class="py-lineno">542</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-381" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-381', 'data', 'link-40');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L543"></a><tt class="py-lineno">543</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-382" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-382', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-383" class="py-name" targets="Method fabio.edfimage.edfimage.unpack()=fabio.edfimage.edfimage-class.html#unpack,Method fabio.tifimage.Image_File_Directory.unpack()=fabio.tifimage.Image_File_Directory-class.html#unpack,Method fabio.tifimage.Image_File_Directory_entry.unpack() [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-383', 'unpack', 'link-383');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L544"></a><tt class="py-lineno">544</tt> <tt class="py-line"> <tt class="py-comment"># self.bytecode = self.data.dtype.type</tt> </tt>
-<a name="L545"></a><tt class="py-lineno">545</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">frame</tt> <tt class="py-op"><</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-384" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-384', 'nframes', 'link-366');">nframes</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L546"></a><tt class="py-lineno">546</tt> <tt class="py-line"> <tt class="py-name">self</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-385" class="py-name" targets="Method fabio.GEimage.GEimage.getframe()=fabio.GEimage.GEimage-class.html#getframe,Method fabio.edfimage.edfimage.getframe()=fabio.edfimage.edfimage-class.html#getframe,Method fabio.fabioimage.fabioimage.getframe()=fabio.fabioimage.fabioimage-class.html#getfr [...]
-fabio.edfimage.edfimage.getframe
-fabio.fabioimage.fabioimage.getframe" class="py-name" href="#" onclick="return doclink('link-385', 'getframe', 'link-385');">getframe</a></tt><tt class="py-op">(</tt><tt class="py-name">frame</tt><tt class="py-op">)</tt> </tt>
-<a name="L547"></a><tt class="py-lineno">547</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L548"></a><tt class="py-lineno">548</tt> <tt class="py-line"> <tt id="link-386" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-386', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Reading file %s You requested frame %s but only %s frames are available"</tt><tt class="py-op">,</tt> <tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">frame</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt i [...]
-<a name="L549"></a><tt class="py-lineno">549</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-388" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-388', 'resetvals', 'link-378');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L550"></a><tt class="py-lineno">550</tt> <tt class="py-line"> <tt class="py-comment"># ensure the PIL image is reset</tt> </tt>
-<a name="L551"></a><tt class="py-lineno">551</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L552"></a><tt class="py-lineno">552</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L553"></a><tt class="py-lineno">553</tt> <tt class="py-line"> </tt>
-<a name="edfimage.swap_needed"></a><div id="edfimage.swap_needed-def"><a name="L554"></a><tt class="py-lineno">554</tt> <a class="py-toggle" href="#" id="edfimage.swap_needed-toggle" onclick="return toggle('edfimage.swap_needed');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#swap_needed">swap_needed</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.swap_needed-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.swap_needed-expanded"><a name="L555"></a><tt class="py-lineno">555</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L556"></a><tt class="py-lineno">556</tt> <tt class="py-line"><tt class="py-docstring"> Decide if we need to byteswap</tt> </tt>
-<a name="L557"></a><tt class="py-lineno">557</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L558"></a><tt class="py-lineno">558</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-string">'Low'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-389" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-389', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="p [...]
-<a name="L559"></a><tt class="py-lineno">559</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'High'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-391" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-391', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-392 [...]
-<a name="L560"></a><tt class="py-lineno">560</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">False</tt> </tt>
-<a name="L561"></a><tt class="py-lineno">561</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-string">'High'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-393" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-393', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class=" [...]
-<a name="L562"></a><tt class="py-lineno">562</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'Low'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-395" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-395', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-396" [...]
-<a name="L563"></a><tt class="py-lineno">563</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-397" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-397', 'bpp', 'link-44');">bpp</a></tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">,</t [...]
-<a name="L564"></a><tt class="py-lineno">564</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">True</tt> </tt>
-<a name="L565"></a><tt class="py-lineno">565</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L566"></a><tt class="py-lineno">566</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">False</tt> </tt>
-</div><a name="L567"></a><tt class="py-lineno">567</tt> <tt class="py-line"> </tt>
-<a name="L568"></a><tt class="py-lineno">568</tt> <tt class="py-line"> </tt>
-<a name="edfimage.unpack"></a><div id="edfimage.unpack-def"><a name="L569"></a><tt class="py-lineno">569</tt> <a class="py-toggle" href="#" id="edfimage.unpack-toggle" onclick="return toggle('edfimage.unpack');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#unpack">unpack</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.unpack-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.unpack-expanded"><a name="L570"></a><tt class="py-lineno">570</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L571"></a><tt class="py-lineno">571</tt> <tt class="py-line"><tt class="py-docstring"> Unpack a binary blob according to the specification given in the header and return the dataset</tt> </tt>
-<a name="L572"></a><tt class="py-lineno">572</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L573"></a><tt class="py-lineno">573</tt> <tt class="py-line"><tt class="py-docstring"> @return: dataset as numpy.ndarray</tt> </tt>
-<a name="L574"></a><tt class="py-lineno">574</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L575"></a><tt class="py-lineno">575</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-398" class="py-name"><a title="fabio.TiffIO.TiffIO.getData
-fabio.edfimage.Frame.getData
-fabio.edfimage.edfimage.getData" class="py-name" href="#" onclick="return doclink('link-398', 'getData', 'link-182');">getData</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L576"></a><tt class="py-lineno">576</tt> <tt class="py-line"> </tt>
-<a name="L577"></a><tt class="py-lineno">577</tt> <tt class="py-line"> </tt>
-<a name="edfimage.getframe"></a><div id="edfimage.getframe-def"><a name="L578"></a><tt class="py-lineno">578</tt> <a class="py-toggle" href="#" id="edfimage.getframe-toggle" onclick="return toggle('edfimage.getframe');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getframe">getframe</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">num</tt><tt class="py-op" [...]
-</div><div id="edfimage.getframe-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getframe-expanded"><a name="L579"></a><tt class="py-lineno">579</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the file numbered 'num' in the series as a fabioimage """</tt> </tt>
-<a name="L580"></a><tt class="py-lineno">580</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L581"></a><tt class="py-lineno">581</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-399" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-399', 'nframes', 'link-366');">nframes</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L582"></a><tt class="py-lineno">582</tt> <tt class="py-line"> <tt id="link-400" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-400', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Single frame EDF; having fabioimage default behavour: %s"</tt> <tt class="py-op">%</tt> <tt class="py-name">num</tt><tt class="py-op">)</tt> </tt>
-<a name="L583"></a><tt class="py-lineno">583</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt id="link-401" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-401', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-402" class="py-name"><a title="fabio.GEimage.GEimage.getframe
-fabio.edfimage.edfimage.getframe
-fabio.fabioimage.fabioimage.getframe" class="py-name" href="#" onclick="return doclink('link-402', 'getframe', 'link-385');">getframe</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-name">num</tt><tt class="py-op">)</tt> </tt>
-<a name="L584"></a><tt class="py-lineno">584</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">num</tt> <tt class="py-keyword">in</tt> <tt class="py-name">xrange</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-403" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-403', 'nframes', 'link-366');">nframes</a></tt><tt class="py-op">)</tt><tt class [...]
-<a name="L585"></a><tt class="py-lineno">585</tt> <tt class="py-line"> <tt id="link-404" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-404', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Multi frame EDF; having edfimage specific behavour: %s/%s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-405" class="py-name"><a title="fabio.e [...]
-<a name="L586"></a><tt class="py-lineno">586</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt id="link-406" class="py-name" targets="Module fabio.edfimage=fabio.edfimage-module.html,Class fabio.edfimage.edfimage=fabio.edfimage.edfimage-class.html"><a title="fabio.edfimage
-fabio.edfimage.edfimage" class="py-name" href="#" onclick="return doclink('link-406', 'edfimage', 'link-406');">edfimage</a></tt><tt class="py-op">(</tt><tt class="py-name">frames</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">)</tt> </tt>
-<a name="L587"></a><tt class="py-lineno">587</tt> <tt class="py-line"> <tt class="py-name">newImage</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">=</tt> <tt class="py-name">num</tt> </tt>
-<a name="L588"></a><tt class="py-lineno">588</tt> <tt class="py-line"> <tt class="py-name">newImage</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> </tt>
-<a name="L589"></a><tt class="py-lineno">589</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L590"></a><tt class="py-lineno">590</tt> <tt class="py-line"> <tt class="py-name">txt</tt> <tt class="py-op">=</tt> <tt class="py-string">"Cannot access frame: %s/%s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-407" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-407', 'nfram [...]
-<a name="L591"></a><tt class="py-lineno">591</tt> <tt class="py-line"> <tt id="link-408" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-408', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-name">txt</tt><tt class="py-op">)</tt> </tt>
-<a name="L592"></a><tt class="py-lineno">592</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">ValueError</tt><tt class="py-op">(</tt><tt class="py-string">"edfimage.getframe:"</tt> <tt class="py-op">+</tt> <tt class="py-name">txt</tt><tt class="py-op">)</tt> </tt>
-<a name="L593"></a><tt class="py-lineno">593</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">newImage</tt> </tt>
-</div><a name="L594"></a><tt class="py-lineno">594</tt> <tt class="py-line"> </tt>
-<a name="L595"></a><tt class="py-lineno">595</tt> <tt class="py-line"> </tt>
-<a name="edfimage.previous"></a><div id="edfimage.previous-def"><a name="L596"></a><tt class="py-lineno">596</tt> <a class="py-toggle" href="#" id="edfimage.previous-toggle" onclick="return toggle('edfimage.previous');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#previous">previous</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.previous-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.previous-expanded"><a name="L597"></a><tt class="py-lineno">597</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the previous file in the series as a fabioimage """</tt> </tt>
-<a name="L598"></a><tt class="py-lineno">598</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L599"></a><tt class="py-lineno">599</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-409" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-409', 'nframes', 'link-366');">nframes</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L600"></a><tt class="py-lineno">600</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt id="link-410" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-410', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-411" class="py-name" targets="Method fabio.GEimage.GEimage.previous()=fabio.GEimage.GEimage-class.html#previous,Method fabio.edfimage.edfimage.previous()=fabio.edfimage.edfimage-class.html#previous,Method fabio.fabioimage.fabioimage.previous()=fabio.fabioimage.fabioimage-class.html#previous,Method fabio.file_series.fil [...]
-fabio.edfimage.edfimage.previous
-fabio.fabioimage.fabioimage.previous
-fabio.file_series.file_series.previous
-fabio.file_series.filename_series.previous" class="py-name" href="#" onclick="return doclink('link-411', 'previous', 'link-411');">previous</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">)</tt> </tt>
-<a name="L601"></a><tt class="py-lineno">601</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L602"></a><tt class="py-lineno">602</tt> <tt class="py-line"> <tt class="py-name">newFrameId</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">-</tt> <tt class="py-number">1</tt> </tt>
-<a name="L603"></a><tt class="py-lineno">603</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-412" class="py-name"><a title="fabio.GEimage.GEimage.getframe
-fabio.edfimage.edfimage.getframe
-fabio.fabioimage.fabioimage.getframe" class="py-name" href="#" onclick="return doclink('link-412', 'getframe', 'link-385');">getframe</a></tt><tt class="py-op">(</tt><tt class="py-name">newFrameId</tt><tt class="py-op">)</tt> </tt>
-<a name="L604"></a><tt class="py-lineno">604</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">newImage</tt> </tt>
-</div><a name="L605"></a><tt class="py-lineno">605</tt> <tt class="py-line"> </tt>
-<a name="L606"></a><tt class="py-lineno">606</tt> <tt class="py-line"> </tt>
-<a name="edfimage.next"></a><div id="edfimage.next-def"><a name="L607"></a><tt class="py-lineno">607</tt> <a class="py-toggle" href="#" id="edfimage.next-toggle" onclick="return toggle('edfimage.next');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#next">next</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.next-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.next-expanded"><a name="L608"></a><tt class="py-lineno">608</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the next file in the series as a fabioimage """</tt> </tt>
-<a name="L609"></a><tt class="py-lineno">609</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L610"></a><tt class="py-lineno">610</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-413" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-413', 'nframes', 'link-366');">nframes</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L611"></a><tt class="py-lineno">611</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt id="link-414" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-414', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-415" class="py-name" targets="Method fabio.GEimage.GEimage.next()=fabio.GEimage.GEimage-class.html#next,Method fabio.edfimage.edfimage.next()=fabio.edfimage.edfimage-class.html#next,Method fabio.fabioimage.fabioimage.next()=fabio.fabioimage.fabioimage-class.html#next,Method fabio.file_series.file_series.next()=fabio.fi [...]
-fabio.edfimage.edfimage.next
-fabio.fabioimage.fabioimage.next
-fabio.file_series.file_series.next
-fabio.file_series.filename_series.next" class="py-name" href="#" onclick="return doclink('link-415', 'next', 'link-415');">next</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">)</tt> </tt>
-<a name="L612"></a><tt class="py-lineno">612</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L613"></a><tt class="py-lineno">613</tt> <tt class="py-line"> <tt class="py-name">newFrameId</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
-<a name="L614"></a><tt class="py-lineno">614</tt> <tt class="py-line"> <tt class="py-name">newImage</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-416" class="py-name"><a title="fabio.GEimage.GEimage.getframe
-fabio.edfimage.edfimage.getframe
-fabio.fabioimage.fabioimage.getframe" class="py-name" href="#" onclick="return doclink('link-416', 'getframe', 'link-385');">getframe</a></tt><tt class="py-op">(</tt><tt class="py-name">newFrameId</tt><tt class="py-op">)</tt> </tt>
-<a name="L615"></a><tt class="py-lineno">615</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">newImage</tt> </tt>
-</div><a name="L616"></a><tt class="py-lineno">616</tt> <tt class="py-line"> </tt>
-<a name="L617"></a><tt class="py-lineno">617</tt> <tt class="py-line"> </tt>
-<a name="edfimage.write"></a><div id="edfimage.write-def"><a name="L618"></a><tt class="py-lineno">618</tt> <a class="py-toggle" href="#" id="edfimage.write-toggle" onclick="return toggle('edfimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt clas [...]
-</div><div id="edfimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.write-expanded"><a name="L619"></a><tt class="py-lineno">619</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L620"></a><tt class="py-lineno">620</tt> <tt class="py-line"><tt class="py-docstring"> Try to write a file</tt> </tt>
-<a name="L621"></a><tt class="py-lineno">621</tt> <tt class="py-line"><tt class="py-docstring"> check we can write zipped also</tt> </tt>
-<a name="L622"></a><tt class="py-lineno">622</tt> <tt class="py-line"><tt class="py-docstring"> mimics that fabian was writing uint16 (we sometimes want floats)</tt> </tt>
-<a name="L623"></a><tt class="py-lineno">623</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L624"></a><tt class="py-lineno">624</tt> <tt class="py-line"><tt class="py-docstring"> @param force_type: can be numpy.uint16 or simply "float"</tt> </tt>
-<a name="L625"></a><tt class="py-lineno">625</tt> <tt class="py-line"><tt class="py-docstring"> @return: None</tt> </tt>
-<a name="L626"></a><tt class="py-lineno">626</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L627"></a><tt class="py-lineno">627</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L628"></a><tt class="py-lineno">628</tt> <tt class="py-line"> </tt>
-<a name="L629"></a><tt class="py-lineno">629</tt> <tt class="py-line"> <tt class="py-name">outfile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-417" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-417', '_open', 'link-379');">_open</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op" [...]
-<a name="L630"></a><tt class="py-lineno">630</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-418" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-418', 'i', 'link-117');">i</a></tt><tt class="py-op">,</tt> <tt class="py-name">frame</tt> <tt class="py-keyword">in</tt> <tt class="py-name">enumerate</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames< [...]
-<a name="L631"></a><tt class="py-lineno">631</tt> <tt class="py-line"> <tt class="py-name">frame</tt><tt class="py-op">.</tt><tt class="py-name">iFrame</tt> <tt class="py-op">=</tt> <tt id="link-419" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-419', 'i', 'link-117');">i</a></tt> </tt>
-<a name="L632"></a><tt class="py-lineno">632</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-420" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryi [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-420', 'write', 'link-420');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">frame</tt><tt class="py-op">.</tt><tt id="link-421" class="py-name" targets="Method fabio.edfimage.Frame.getEdfBlock()=fabio.edfimage.Frame-class.html#getEdfBlock"><a title="fabio.edfimage.Frame.getEdfBlock" class="py-name" href="#" onclick="return doclink('link-421', 'getEdfBlock', 'link-421');">getEdfBlock</a></tt>< [...]
-<a name="L633"></a><tt class="py-lineno">633</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L634"></a><tt class="py-lineno">634</tt> <tt class="py-line"> </tt>
-<a name="L635"></a><tt class="py-lineno">635</tt> <tt class="py-line"> </tt>
-<a name="edfimage.appendFrame"></a><div id="edfimage.appendFrame-def"><a name="L636"></a><tt class="py-lineno">636</tt> <a class="py-toggle" href="#" id="edfimage.appendFrame-toggle" onclick="return toggle('edfimage.appendFrame');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#appendFrame">appendFrame</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">frame</ [...]
-</div><div id="edfimage.appendFrame-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.appendFrame-expanded"><a name="L637"></a><tt class="py-lineno">637</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L638"></a><tt class="py-lineno">638</tt> <tt class="py-line"><tt class="py-docstring"> Method used add a frame to an EDF file</tt> </tt>
-<a name="L639"></a><tt class="py-lineno">639</tt> <tt class="py-line"><tt class="py-docstring"> @param frame: frame to append to edf image </tt> </tt>
-<a name="L640"></a><tt class="py-lineno">640</tt> <tt class="py-line"><tt class="py-docstring"> @type frame: instance of Frame</tt> </tt>
-<a name="L641"></a><tt class="py-lineno">641</tt> <tt class="py-line"><tt class="py-docstring"> @return: None</tt> </tt>
-<a name="L642"></a><tt class="py-lineno">642</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L643"></a><tt class="py-lineno">643</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">frame</tt><tt class="py-op">,</tt> <tt id="link-422" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-422', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L644"></a><tt class="py-lineno">644</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">frame</tt><tt class="py-op">)</tt> </tt>
-<a name="L645"></a><tt class="py-lineno">645</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L646"></a><tt class="py-lineno">646</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-423" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-423', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt id="link-424" class="py-name"><a title="fabio.edfima [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-424', 'data', 'link-40');">data</a></tt><tt class="py-op">,</tt> <tt id="link-425" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-425', 'header', 'link-15');">header</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L647"></a><tt class="py-lineno">647</tt> <tt class="py-line"> </tt>
-<a name="L648"></a><tt class="py-lineno">648</tt> <tt class="py-line"> </tt>
-<a name="edfimage.deleteFrame"></a><div id="edfimage.deleteFrame-def"><a name="L649"></a><tt class="py-lineno">649</tt> <a class="py-toggle" href="#" id="edfimage.deleteFrame-toggle" onclick="return toggle('edfimage.deleteFrame');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#deleteFrame">deleteFrame</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">frameNb [...]
-</div><div id="edfimage.deleteFrame-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.deleteFrame-expanded"><a name="L650"></a><tt class="py-lineno">650</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L651"></a><tt class="py-lineno">651</tt> <tt class="py-line"><tt class="py-docstring"> Method used to remove a frame from an EDF image. by default the last one is removed.</tt> </tt>
-<a name="L652"></a><tt class="py-lineno">652</tt> <tt class="py-line"><tt class="py-docstring"> @param frameNb: frame number to remove, by default the last.</tt> </tt>
-<a name="L653"></a><tt class="py-lineno">653</tt> <tt class="py-line"><tt class="py-docstring"> @type frameNb: integer</tt> </tt>
-<a name="L654"></a><tt class="py-lineno">654</tt> <tt class="py-line"><tt class="py-docstring"> @return: None</tt> </tt>
-<a name="L655"></a><tt class="py-lineno">655</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L656"></a><tt class="py-lineno">656</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">frameNb</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L657"></a><tt class="py-lineno">657</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt id="link-426" class="py-name"><a title="fabio.cbfimage.CIF.pop" class="py-name" href="#" onclick="return doclink('link-426', 'pop', 'link-208');">pop</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L658"></a><tt class="py-lineno">658</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L659"></a><tt class="py-lineno">659</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt id="link-427" class="py-name"><a title="fabio.cbfimage.CIF.pop" class="py-name" href="#" onclick="return doclink('link-427', 'pop', 'link-208');">pop</a></tt><tt class="py-op">(</tt><tt class="py-name">frameNb</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L660"></a><tt class="py-lineno">660</tt> <tt class="py-line"> </tt>
-<a name="L661"></a><tt class="py-lineno">661</tt> <tt class="py-line"> </tt>
-<a name="L662"></a><tt class="py-lineno">662</tt> <tt class="py-line"><tt class="py-comment">################################################################################</tt> </tt>
-<a name="L663"></a><tt class="py-lineno">663</tt> <tt class="py-line"><tt class="py-comment"># Properties definition for header, data, header_keys and capsHeader </tt> </tt>
-<a name="L664"></a><tt class="py-lineno">664</tt> <tt class="py-line"><tt class="py-comment">################################################################################</tt> </tt>
-<a name="edfimage.getNbFrames"></a><div id="edfimage.getNbFrames-def"><a name="L665"></a><tt class="py-lineno">665</tt> <a class="py-toggle" href="#" id="edfimage.getNbFrames-toggle" onclick="return toggle('edfimage.getNbFrames');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getNbFrames">getNbFrames</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.getNbFrames-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getNbFrames-expanded"><a name="L666"></a><tt class="py-lineno">666</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L667"></a><tt class="py-lineno">667</tt> <tt class="py-line"><tt class="py-docstring"> Getter for number of frames</tt> </tt>
-<a name="L668"></a><tt class="py-lineno">668</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L669"></a><tt class="py-lineno">669</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-428" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-428', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">)</tt> </tt>
-</div><a name="edfimage.setNbFrames"></a><div id="edfimage.setNbFrames-def"><a name="L670"></a><tt class="py-lineno">670</tt> <a class="py-toggle" href="#" id="edfimage.setNbFrames-toggle" onclick="return toggle('edfimage.setNbFrames');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setNbFrames">setNbFrames</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">v [...]
-</div><div id="edfimage.setNbFrames-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setNbFrames-expanded"><a name="L671"></a><tt class="py-lineno">671</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L672"></a><tt class="py-lineno">672</tt> <tt class="py-line"><tt class="py-docstring"> Setter for number of frames ... should do nothing. Here just to avoid bugs </tt> </tt>
-<a name="L673"></a><tt class="py-lineno">673</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L674"></a><tt class="py-lineno">674</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">val</tt> <tt class="py-op">!=</tt> <tt id="link-429" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-429', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">)</tt><tt class="py-op">:< [...]
-<a name="L675"></a><tt class="py-lineno">675</tt> <tt class="py-line"> <tt id="link-430" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-430', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"trying to set the number of frames "</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L676"></a><tt class="py-lineno">676</tt> <tt class="py-line"> <tt id="link-431" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-431', 'nframes', 'link-366');">nframes</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-432" class="py-name" targets="Method fabio.edfimage.edfimage.getNbFrames()=fabio.edfimage.edfimage-class.html#getNbFrames"><a title="fab [...]
-<a name="L677"></a><tt class="py-lineno">677</tt> <tt class="py-line"> </tt>
-<a name="L678"></a><tt class="py-lineno">678</tt> <tt class="py-line"> </tt>
-<a name="edfimage.getHeader"></a><div id="edfimage.getHeader-def"><a name="L679"></a><tt class="py-lineno">679</tt> <a class="py-toggle" href="#" id="edfimage.getHeader-toggle" onclick="return toggle('edfimage.getHeader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getHeader">getHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.getHeader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getHeader-expanded"><a name="L680"></a><tt class="py-lineno">680</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L681"></a><tt class="py-lineno">681</tt> <tt class="py-line"><tt class="py-docstring"> Getter for the headers. used by the property header,</tt> </tt>
-<a name="L682"></a><tt class="py-lineno">682</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L683"></a><tt class="py-lineno">683</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-434" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link [...]
-</div><a name="edfimage.setHeader"></a><div id="edfimage.setHeader-def"><a name="L684"></a><tt class="py-lineno">684</tt> <a class="py-toggle" href="#" id="edfimage.setHeader-toggle" onclick="return toggle('edfimage.setHeader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setHeader">setHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_dictHeader</ [...]
-</div><div id="edfimage.setHeader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setHeader-expanded"><a name="L685"></a><tt class="py-lineno">685</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L686"></a><tt class="py-lineno">686</tt> <tt class="py-line"><tt class="py-docstring"> Enforces the propagation of the header to the list of frames</tt> </tt>
-<a name="L687"></a><tt class="py-lineno">687</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L688"></a><tt class="py-lineno">688</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L689"></a><tt class="py-lineno">689</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-435" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-435', 'header', 'link-15');">h [...]
-<a name="L690"></a><tt class="py-lineno">690</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L691"></a><tt class="py-lineno">691</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-436" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-436', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt id="link-437" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py [...]
-<a name="L692"></a><tt class="py-lineno">692</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
-<a name="L693"></a><tt class="py-lineno">693</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt id="link-438" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-438', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class [...]
-<a name="L694"></a><tt class="py-lineno">694</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-439" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-439', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt id="link-440" class="py-name"><a title="fabio.ed [...]
-</div><a name="edfimage.delHeader"></a><div id="edfimage.delHeader-def"><a name="L695"></a><tt class="py-lineno">695</tt> <a class="py-toggle" href="#" id="edfimage.delHeader-toggle" onclick="return toggle('edfimage.delHeader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#delHeader">delHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.delHeader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.delHeader-expanded"><a name="L696"></a><tt class="py-lineno">696</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L697"></a><tt class="py-lineno">697</tt> <tt class="py-line"><tt class="py-docstring"> Deleter for edf header</tt> </tt>
-<a name="L698"></a><tt class="py-lineno">698</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L699"></a><tt class="py-lineno">699</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-441" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-441', 'header', 'link-15');">heade [...]
-</div><a name="L700"></a><tt class="py-lineno">700</tt> <tt class="py-line"> <tt id="link-442" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-442', 'header', 'link-15');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-443" class="py-name" targets="Method fabio.edfimage.edfimage.getHeader()=fabio.edfimage.edfimage-class.html#getHeader"><a title="fabio.edfim [...]
-<a name="L701"></a><tt class="py-lineno">701</tt> <tt class="py-line"> </tt>
-<a name="edfimage.getHeaderKeys"></a><div id="edfimage.getHeaderKeys-def"><a name="L702"></a><tt class="py-lineno">702</tt> <a class="py-toggle" href="#" id="edfimage.getHeaderKeys-toggle" onclick="return toggle('edfimage.getHeaderKeys');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getHeaderKeys">getHeaderKeys</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op" [...]
-</div><div id="edfimage.getHeaderKeys-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getHeaderKeys-expanded"><a name="L703"></a><tt class="py-lineno">703</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L704"></a><tt class="py-lineno">704</tt> <tt class="py-line"><tt class="py-docstring"> Getter for edf header_keys</tt> </tt>
-<a name="L705"></a><tt class="py-lineno">705</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L706"></a><tt class="py-lineno">706</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-446" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink( [...]
-</div><a name="edfimage.setHeaderKeys"></a><div id="edfimage.setHeaderKeys-def"><a name="L707"></a><tt class="py-lineno">707</tt> <a class="py-toggle" href="#" id="edfimage.setHeaderKeys-toggle" onclick="return toggle('edfimage.setHeaderKeys');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setHeaderKeys">setHeaderKeys</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class= [...]
-</div><div id="edfimage.setHeaderKeys-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setHeaderKeys-expanded"><a name="L708"></a><tt class="py-lineno">708</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L709"></a><tt class="py-lineno">709</tt> <tt class="py-line"><tt class="py-docstring"> Enforces the propagation of the header_keys to the list of frames</tt> </tt>
-<a name="L710"></a><tt class="py-lineno">710</tt> <tt class="py-line"><tt class="py-docstring"> @param _listtHeader: list of the (ordered) keys in the header</tt> </tt>
-<a name="L711"></a><tt class="py-lineno">711</tt> <tt class="py-line"><tt class="py-docstring"> @type _listtHeader: python list</tt> </tt>
-<a name="L712"></a><tt class="py-lineno">712</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L713"></a><tt class="py-lineno">713</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L714"></a><tt class="py-lineno">714</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-447" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-447', 'header_keys', 'lin [...]
-<a name="L715"></a><tt class="py-lineno">715</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L716"></a><tt class="py-lineno">716</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-448" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-448', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt id="link-449" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" clas [...]
-<a name="L717"></a><tt class="py-lineno">717</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
-<a name="L718"></a><tt class="py-lineno">718</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt id="link-450" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-450', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class [...]
-<a name="L719"></a><tt class="py-lineno">719</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-451" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-451', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt id="link-452" class="py-name"><a title="fabio.ed [...]
-</div><a name="edfimage.delHeaderKeys"></a><div id="edfimage.delHeaderKeys-def"><a name="L720"></a><tt class="py-lineno">720</tt> <a class="py-toggle" href="#" id="edfimage.delHeaderKeys-toggle" onclick="return toggle('edfimage.delHeaderKeys');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#delHeaderKeys">delHeaderKeys</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="edfimage.delHeaderKeys-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.delHeaderKeys-expanded"><a name="L721"></a><tt class="py-lineno">721</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L722"></a><tt class="py-lineno">722</tt> <tt class="py-line"><tt class="py-docstring"> Deleter for edf header_keys</tt> </tt>
-<a name="L723"></a><tt class="py-lineno">723</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L724"></a><tt class="py-lineno">724</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-453" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-453', 'header_keys', 'link-19 [...]
-</div><a name="L725"></a><tt class="py-lineno">725</tt> <tt class="py-line"> <tt id="link-454" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-454', 'header_keys', 'link-19');">header_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-455" class="py-name" targets="Method fabio.edfimage.edfimage.getHeaderKeys()=fabio.edfimage.edfimage-class.html#getHeaderKeys [...]
-<a name="L726"></a><tt class="py-lineno">726</tt> <tt class="py-line"> </tt>
-<a name="edfimage.getData"></a><div id="edfimage.getData-def"><a name="L727"></a><tt class="py-lineno">727</tt> <a class="py-toggle" href="#" id="edfimage.getData-toggle" onclick="return toggle('edfimage.getData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getData">getData</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.getData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getData-expanded"><a name="L728"></a><tt class="py-lineno">728</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L729"></a><tt class="py-lineno">729</tt> <tt class="py-line"><tt class="py-docstring"> getter for edf Data</tt> </tt>
-<a name="L730"></a><tt class="py-lineno">730</tt> <tt class="py-line"><tt class="py-docstring"> @return: data for current frame </tt> </tt>
-<a name="L731"></a><tt class="py-lineno">731</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: numpy.ndarray</tt> </tt>
-<a name="L732"></a><tt class="py-lineno">732</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L733"></a><tt class="py-lineno">733</tt> <tt class="py-line"> <tt class="py-name">npaData</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L734"></a><tt class="py-lineno">734</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L735"></a><tt class="py-lineno">735</tt> <tt class="py-line"> <tt class="py-name">npaData</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-458" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-458', 'data', 'link-40');">data</a></tt> </tt>
-<a name="L736"></a><tt class="py-lineno">736</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L737"></a><tt class="py-lineno">737</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-459" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-459', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L738"></a><tt class="py-lineno">738</tt> <tt class="py-line"> <tt class="py-name">npaData</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-460" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-460', 'data', 'link-40');">data</a></tt> </tt>
-<a name="L739"></a><tt class="py-lineno">739</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
-<a name="L740"></a><tt class="py-lineno">740</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt id="link-461" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-461', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class [...]
-<a name="L741"></a><tt class="py-lineno">741</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-462" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-462', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L742"></a><tt class="py-lineno">742</tt> <tt class="py-line"> <tt class="py-name">npaData</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-463" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-463', 'data', 'link-40');">data</a></tt> </tt>
-<a name="L743"></a><tt class="py-lineno">743</tt> <tt class="py-line"><tt class="py-comment"># logger.warning("Data of %s, currentframe=%s is type %s" % (id(self), self.currentframe, type(npaData)))</tt> </tt>
-<a name="L744"></a><tt class="py-lineno">744</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">npaData</tt> </tt>
-</div><a name="L745"></a><tt class="py-lineno">745</tt> <tt class="py-line"> </tt>
-<a name="edfimage.setData"></a><div id="edfimage.setData-def"><a name="L746"></a><tt class="py-lineno">746</tt> <a class="py-toggle" href="#" id="edfimage.setData-toggle" onclick="return toggle('edfimage.setData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setData">setData</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_data</tt><tt class="py-op">)</ [...]
-</div><div id="edfimage.setData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setData-expanded"><a name="L747"></a><tt class="py-lineno">747</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L748"></a><tt class="py-lineno">748</tt> <tt class="py-line"><tt class="py-docstring"> Enforces the propagation of the data to the list of frames</tt> </tt>
-<a name="L749"></a><tt class="py-lineno">749</tt> <tt class="py-line"><tt class="py-docstring"> @param _data: numpy array representing data </tt> </tt>
-<a name="L750"></a><tt class="py-lineno">750</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L751"></a><tt class="py-lineno">751</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L752"></a><tt class="py-lineno">752</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-464" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-464', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">_data</tt> </tt>
-<a name="L753"></a><tt class="py-lineno">753</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L754"></a><tt class="py-lineno">754</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-465" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-465', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt id="link-466" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-466', 'data', 'link-40');">data</a></tt><tt class="py-op">=</tt><tt class="py-name">_data</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L755"></a><tt class="py-lineno">755</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
-<a name="L756"></a><tt class="py-lineno">756</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt id="link-467" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-467', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class [...]
-<a name="L757"></a><tt class="py-lineno">757</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-468" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-468', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt id="link-469" class="py-name"><a title="fabio.ed [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-469', 'data', 'link-40');">data</a></tt><tt class="py-op">=</tt><tt class="py-name">_data</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="edfimage.delData"></a><div id="edfimage.delData-def"><a name="L758"></a><tt class="py-lineno">758</tt> <a class="py-toggle" href="#" id="edfimage.delData-toggle" onclick="return toggle('edfimage.delData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#delData">delData</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.delData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.delData-expanded"><a name="L759"></a><tt class="py-lineno">759</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L760"></a><tt class="py-lineno">760</tt> <tt class="py-line"><tt class="py-docstring"> deleter for edf Data</tt> </tt>
-<a name="L761"></a><tt class="py-lineno">761</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L762"></a><tt class="py-lineno">762</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-470" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-470', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L763"></a><tt class="py-lineno">763</tt> <tt class="py-line"> <tt id="link-471" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-471', 'data', 'link-40');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-472" class="py-name"><a title="fabio.TiffIO.TiffIO.getData
-fabio.edfimage.Frame.getData
-fabio.edfimage.edfimage.getData" class="py-name" href="#" onclick="return doclink('link-472', 'getData', 'link-182');">getData</a></tt><tt class="py-op">,</tt> <tt id="link-473" class="py-name"><a title="fabio.OXDimage.Section.setData
-fabio.edfimage.Frame.setData
-fabio.edfimage.edfimage.setData" class="py-name" href="#" onclick="return doclink('link-473', 'setData', 'link-183');">setData</a></tt><tt class="py-op">,</tt> <tt id="link-474" class="py-name" targets="Method fabio.edfimage.edfimage.delData()=fabio.edfimage.edfimage-class.html#delData"><a title="fabio.edfimage.edfimage.delData" class="py-name" href="#" onclick="return doclink('link-474', 'delData', 'link-474');">delData</a></tt><tt class="py-op">,</tt> <tt class="py-string">"property: d [...]
-<a name="L764"></a><tt class="py-lineno">764</tt> <tt class="py-line"> </tt>
-<a name="edfimage.getCapsHeader"></a><div id="edfimage.getCapsHeader-def"><a name="L765"></a><tt class="py-lineno">765</tt> <a class="py-toggle" href="#" id="edfimage.getCapsHeader-toggle" onclick="return toggle('edfimage.getCapsHeader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getCapsHeader">getCapsHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op" [...]
-</div><div id="edfimage.getCapsHeader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getCapsHeader-expanded"><a name="L766"></a><tt class="py-lineno">766</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L767"></a><tt class="py-lineno">767</tt> <tt class="py-line"><tt class="py-docstring"> getter for edf headers keys in upper case </tt> </tt>
-<a name="L768"></a><tt class="py-lineno">768</tt> <tt class="py-line"><tt class="py-docstring"> @return: data for current frame </tt> </tt>
-<a name="L769"></a><tt class="py-lineno">769</tt> <tt class="py-line"><tt class="py-docstring"> @rtype: dict</tt> </tt>
-<a name="L770"></a><tt class="py-lineno">770</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L771"></a><tt class="py-lineno">771</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-475" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink(' [...]
-</div><a name="edfimage.setCapsHeader"></a><div id="edfimage.setCapsHeader-def"><a name="L772"></a><tt class="py-lineno">772</tt> <a class="py-toggle" href="#" id="edfimage.setCapsHeader-toggle" onclick="return toggle('edfimage.setCapsHeader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setCapsHeader">setCapsHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class= [...]
-</div><div id="edfimage.setCapsHeader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setCapsHeader-expanded"><a name="L773"></a><tt class="py-lineno">773</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L774"></a><tt class="py-lineno">774</tt> <tt class="py-line"><tt class="py-docstring"> Enforces the propagation of the header_keys to the list of frames</tt> </tt>
-<a name="L775"></a><tt class="py-lineno">775</tt> <tt class="py-line"><tt class="py-docstring"> @param _data: numpy array representing data </tt> </tt>
-<a name="L776"></a><tt class="py-lineno">776</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L777"></a><tt class="py-lineno">777</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-476" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-476', 'capsHeader', 'link-32') [...]
-</div><a name="edfimage.delCapsHeader"></a><div id="edfimage.delCapsHeader-def"><a name="L778"></a><tt class="py-lineno">778</tt> <a class="py-toggle" href="#" id="edfimage.delCapsHeader-toggle" onclick="return toggle('edfimage.delCapsHeader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#delCapsHeader">delCapsHeader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="edfimage.delCapsHeader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.delCapsHeader-expanded"><a name="L779"></a><tt class="py-lineno">779</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L780"></a><tt class="py-lineno">780</tt> <tt class="py-line"><tt class="py-docstring"> deleter for edf capsHeader</tt> </tt>
-<a name="L781"></a><tt class="py-lineno">781</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L782"></a><tt class="py-lineno">782</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-477" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-477', 'capsHeader', 'link-32') [...]
-</div><a name="L783"></a><tt class="py-lineno">783</tt> <tt class="py-line"> <tt id="link-478" class="py-name"><a title="fabio.edfimage.edfimage.capsHeader" class="py-name" href="#" onclick="return doclink('link-478', 'capsHeader', 'link-32');">capsHeader</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-479" class="py-name" targets="Method fabio.edfimage.edfimage.getCapsHeader()=fabio.edfimage.edfimage-class.html#getCapsHeader">< [...]
-<a name="L784"></a><tt class="py-lineno">784</tt> <tt class="py-line"> </tt>
-<a name="edfimage.getDim1"></a><div id="edfimage.getDim1-def"><a name="L785"></a><tt class="py-lineno">785</tt> <a class="py-toggle" href="#" id="edfimage.getDim1-toggle" onclick="return toggle('edfimage.getDim1');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getDim1">getDim1</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.getDim1-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getDim1-expanded"><a name="L786"></a><tt class="py-lineno">786</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">. [...]
-</div><a name="edfimage.setDim1"></a><div id="edfimage.setDim1-def"><a name="L787"></a><tt class="py-lineno">787</tt> <a class="py-toggle" href="#" id="edfimage.setDim1-toggle" onclick="return toggle('edfimage.setDim1');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setDim1">setDim1</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_iVal</tt><tt class="py-o [...]
-</div><div id="edfimage.setDim1-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setDim1-expanded"><a name="L788"></a><tt class="py-lineno">788</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L789"></a><tt class="py-lineno">789</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-483" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-483', 'dim1', 'link-42');">dim1< [...]
-<a name="L790"></a><tt class="py-lineno">790</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L791"></a><tt class="py-lineno">791</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-484" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-484', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L792"></a><tt class="py-lineno">792</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
-<a name="L793"></a><tt class="py-lineno">793</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt id="link-485" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-485', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class [...]
-<a name="L794"></a><tt class="py-lineno">794</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-486" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-486', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L795"></a><tt class="py-lineno">795</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-487" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-487', 'dim1', 'link-42');">d [...]
-</div><a name="L796"></a><tt class="py-lineno">796</tt> <tt class="py-line"> <tt id="link-488" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-488', 'dim1', 'link-42');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-489" class="py-name" targets="Method fabio.edfimage.edfimage.getDim1()=fabio.edfimage.edfimage-class.html#getDim1"><a title="fabio.edfimage.edfima [...]
-<a name="edfimage.getDim2"></a><div id="edfimage.getDim2-def"><a name="L797"></a><tt class="py-lineno">797</tt> <a class="py-toggle" href="#" id="edfimage.getDim2-toggle" onclick="return toggle('edfimage.getDim2');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getDim2">getDim2</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.getDim2-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getDim2-expanded"><a name="L798"></a><tt class="py-lineno">798</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">. [...]
-</div><a name="edfimage.setDim2"></a><div id="edfimage.setDim2-def"><a name="L799"></a><tt class="py-lineno">799</tt> <a class="py-toggle" href="#" id="edfimage.setDim2-toggle" onclick="return toggle('edfimage.setDim2');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setDim2">setDim2</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_iVal</tt><tt class="py-o [...]
-</div><div id="edfimage.setDim2-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setDim2-expanded"><a name="L800"></a><tt class="py-lineno">800</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L801"></a><tt class="py-lineno">801</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-492" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-492', 'dim2', 'link-43');">dim2< [...]
-<a name="L802"></a><tt class="py-lineno">802</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L803"></a><tt class="py-lineno">803</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-493" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-493', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L804"></a><tt class="py-lineno">804</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
-<a name="L805"></a><tt class="py-lineno">805</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt id="link-494" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-494', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class [...]
-<a name="L806"></a><tt class="py-lineno">806</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-495" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-495', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L807"></a><tt class="py-lineno">807</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-496" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-496', 'dim2', 'link-43');">d [...]
-</div><a name="L808"></a><tt class="py-lineno">808</tt> <tt class="py-line"> <tt id="link-497" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-497', 'dim2', 'link-43');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-498" class="py-name" targets="Method fabio.edfimage.edfimage.getDim2()=fabio.edfimage.edfimage-class.html#getDim2"><a title="fabio.edfimage.edfima [...]
-<a name="L809"></a><tt class="py-lineno">809</tt> <tt class="py-line"> </tt>
-<a name="edfimage.getDims"></a><div id="edfimage.getDims-def"><a name="L810"></a><tt class="py-lineno">810</tt> <a class="py-toggle" href="#" id="edfimage.getDims-toggle" onclick="return toggle('edfimage.getDims');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getDims">getDims</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.getDims-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getDims-expanded"><a name="L811"></a><tt class="py-lineno">811</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">. [...]
-</div><a name="L812"></a><tt class="py-lineno">812</tt> <tt class="py-line"> <tt id="link-501" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-501', 'dims', 'link-41');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-502" class="py-name" targets="Method fabio.edfimage.edfimage.getDims()=fabio.edfimage.edfimage-class.html#getDims"><a title="fabio.edfimage.edfima [...]
-<a name="edfimage.getByteCode"></a><div id="edfimage.getByteCode-def"><a name="L813"></a><tt class="py-lineno">813</tt> <a class="py-toggle" href="#" id="edfimage.getByteCode-toggle" onclick="return toggle('edfimage.getByteCode');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getByteCode">getByteCode</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.getByteCode-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getByteCode-expanded"><a name="L814"></a><tt class="py-lineno">814</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class=" [...]
-</div><a name="edfimage.setByteCode"></a><div id="edfimage.setByteCode-def"><a name="L815"></a><tt class="py-lineno">815</tt> <a class="py-toggle" href="#" id="edfimage.setByteCode-toggle" onclick="return toggle('edfimage.setByteCode');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setByteCode">setByteCode</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_ [...]
-</div><div id="edfimage.setByteCode-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setByteCode-expanded"><a name="L816"></a><tt class="py-lineno">816</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L817"></a><tt class="py-lineno">817</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-504" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-504', 'bytecode', 'link-45') [...]
-<a name="L818"></a><tt class="py-lineno">818</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L819"></a><tt class="py-lineno">819</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-505" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-505', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L820"></a><tt class="py-lineno">820</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
-<a name="L821"></a><tt class="py-lineno">821</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt id="link-506" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-506', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class [...]
-<a name="L822"></a><tt class="py-lineno">822</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-507" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-507', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L823"></a><tt class="py-lineno">823</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-508" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-508', 'bytecode', 'link- [...]
-</div><a name="L824"></a><tt class="py-lineno">824</tt> <tt class="py-line"> </tt>
-<a name="L825"></a><tt class="py-lineno">825</tt> <tt class="py-line"> <tt id="link-509" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-509', 'bytecode', 'link-45');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-510" class="py-name" targets="Method fabio.edfimage.edfimage.getByteCode()=fabio.edfimage.edfimage-class.html#getByteCode"><a title="fabio.e [...]
-<a name="edfimage.getBpp"></a><div id="edfimage.getBpp-def"><a name="L826"></a><tt class="py-lineno">826</tt> <a class="py-toggle" href="#" id="edfimage.getBpp-toggle" onclick="return toggle('edfimage.getBpp');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#getBpp">getBpp</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="edfimage.getBpp-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.getBpp-expanded"><a name="L827"></a><tt class="py-lineno">827</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</ [...]
-</div><a name="edfimage.setBpp"></a><div id="edfimage.setBpp-def"><a name="L828"></a><tt class="py-lineno">828</tt> <a class="py-toggle" href="#" id="edfimage.setBpp-toggle" onclick="return toggle('edfimage.setBpp');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.edfimage.edfimage-class.html#setBpp">setBpp</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">_iVal</tt><tt class="py-op">)</ [...]
-</div><div id="edfimage.setBpp-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="edfimage.setBpp-expanded"><a name="L829"></a><tt class="py-lineno">829</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L830"></a><tt class="py-lineno">830</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-513" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-513', 'bpp', 'link-44');">bpp</a> [...]
-<a name="L831"></a><tt class="py-lineno">831</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L832"></a><tt class="py-lineno">832</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-514" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-514', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L833"></a><tt class="py-lineno">833</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IndexError</tt><tt class="py-op">:</tt> </tt>
-<a name="L834"></a><tt class="py-lineno">834</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op"><</tt> <tt id="link-515" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-515', 'len', 'link-109');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class [...]
-<a name="L835"></a><tt class="py-lineno">835</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-516" class="py-name"><a title="fabio.edfimage.Frame" class="py-name" href="#" onclick="return doclink('link-516', 'Frame', 'link-336');">Frame</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L836"></a><tt class="py-lineno">836</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__frames</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-517" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-517', 'bpp', 'link-44');">bpp [...]
-</div><a name="L837"></a><tt class="py-lineno">837</tt> <tt class="py-line"> <tt id="link-518" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-518', 'bpp', 'link-44');">bpp</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-519" class="py-name" targets="Method fabio.edfimage.edfimage.getBpp()=fabio.edfimage.edfimage-class.html#getBpp"><a title="fabio.edfimage.edfimage.ge [...]
-</div><a name="L838"></a><tt class="py-lineno">838</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- href="module-tree.html">Trees</a> </th>
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- </tr>
-</table>
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- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:29 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.edfimage.Frame-class.html b/doc/html/fabio.edfimage.Frame-class.html
deleted file mode 100644
index 43e9d13..0000000
--- a/doc/html/fabio.edfimage.Frame-class.html
+++ /dev/null
@@ -1,471 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.edfimage.Frame</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.edfimage-module.html">Module edfimage</a> ::
- Class Frame
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.edfimage.Frame-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class Frame</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <strong class="uidshort">Frame</strong>
-</pre>
-
-<hr />
-<p>A class representing a single frame in an EDF file</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.Frame-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">header</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">header_keys</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">number</span>=<span class="summary-sig-default">None</span>)</span><br />
- x.__init__(...) initializes x; see x.__class__.__doc__ for signature</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.Frame-class.html#parseheader" class="summary-sig-name">parseheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">block</span>)</span><br />
- Parse the header in some EDF format from an already open file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.parseheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="swap_needed"></a><span class="summary-sig-name">swap_needed</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Decide if we need to byteswap</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.swap_needed">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.Frame-class.html#getData" class="summary-sig-name">getData</a>(<span class="summary-sig-arg">self</span>)</span><br />
- Unpack a binary blob according to the specification given in the
- header</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.getData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="setData"></a><span class="summary-sig-name">setData</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">npa</span>=<span class="summary-sig-default">None</span>)</span><br />
- Setter for data in edf frame</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.setData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">python string with the concatenation of the ascii header and the
- binary data block</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.Frame-class.html#getEdfBlock" class="summary-sig-name">getEdfBlock</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">force_type</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">fit2dMode</span>=<span class="summary-sig-default">False</span>)</span><br />
- Returns:
- ascii header block</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.getEdfBlock">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.Frame-class.html#data" class="summary-name">data</a><br />
- Unpack a binary blob according to the specification given in the
- header
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">data</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">header</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">header_keys</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">number</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>x.__init__(...) initializes x; see x.__class__.__doc__ for
- signature</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="parseheader"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">parseheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">block</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.parseheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Parse the header in some EDF format from an already open file</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>block</code></strong> (string, should be full ascii) - string representing the header block</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>size of the binary blob</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="getData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">getData</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.getData">source code</a></span>
- </td>
- </tr></table>
-
- <p>Unpack a binary blob according to the specification given in the
- header</p>
- <dl class="fields">
- <dt>Returns:</dt>
- <dd>dataset as numpy.ndarray</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="getEdfBlock"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">getEdfBlock</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">force_type</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">fit2dMode</span>=<span class="sig-default">False</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#Frame.getEdfBlock">source code</a></span>
- </td>
- </tr></table>
-
-
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>force_type</code></strong> (string or numpy.dtype) - type of the dataset to be enforced like "float64" or
- "uint16"</li>
- <li><strong class="pname"><code>fit2dMode</code></strong> (boolean) - enforce compatibility with fit2d and starts countimg number of
- images at 1</li>
- </ul></dd>
- <dt>Returns: python string with the concatenation of the ascii header and the
- binary data block</dt>
- <dd>ascii header block</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== PROPERTY DETAILS ==================== -->
-<a name="section-PropertyDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Property Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-PropertyDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="data"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">data</h3>
- <p>Unpack a binary blob according to the specification given in the
- header</p>
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.Frame-class.html#getData" class="summary-sig-name">getData</a>(<span class="summary-sig-arg">self</span>)</span>
- - Unpack a binary blob according to the specification given in the
- header
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.Frame-class.html#setData" class="summary-sig-name">setData</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">npa</span>=<span class="summary-sig-default">None</span>)</span>
- - Setter for data in edf frame
- </dd>
- <dt>Delete Method:</dt>
- <dd class="value"><table><tr><td><pre class="variable">
-<code class="variable-quote">'</code><code class="variable-string">property: (edf)frame.data, uncompress the datablock when needed</code><code class="variable-quote">'</code>
-</pre></td></tr></table>
-
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
-
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- href="help.html">Help</a> </th>
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- <th class="navbar" width="100%"></th>
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-</table>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
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- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.edfimage.edfimage-class.html b/doc/html/fabio.edfimage.edfimage-class.html
deleted file mode 100644
index 9fa0dbd..0000000
--- a/doc/html/fabio.edfimage.edfimage-class.html
+++ /dev/null
@@ -1,1671 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.edfimage.edfimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
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- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.edfimage-module.html">Module edfimage</a> ::
- Class edfimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.edfimage.edfimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class edfimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">edfimage</strong>
-</pre>
-
-<hr />
-<p>Read and try to write the ESRF edf data format</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">header</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">header_keys</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">frames</span>=<span class="summary-sig-default">None</span>)</span><br />
- Set up initial values</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Read all headers in a file and populate self.header data is not yet
- populated</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="swap_needed"></a><span class="summary-sig-name">swap_needed</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Decide if we need to byteswap</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.swap_needed">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#unpack" class="summary-sig-name">unpack</a>(<span class="summary-sig-arg">self</span>)</span><br />
- Unpack a binary blob according to the specification given in the
- header and return the dataset</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.unpack">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getframe" class="summary-sig-name">getframe</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- returns the file numbered 'num' in the series as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getframe">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#previous" class="summary-sig-name">previous</a>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the previous file in the series as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.previous">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#next" class="summary-sig-name">next</a>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the next file in the series as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.next">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">force_type</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">fit2dMode</span>=<span class="summary-sig-default">False</span>)</span><br />
- Try to write a file check we can write zipped also mimics that fabian
- was writing uint16 (we sometimes want floats)</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#appendFrame" class="summary-sig-name">appendFrame</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">header</span>=<span class="summary-sig-default">None</span>)</span><br />
- Method used add a frame to an EDF file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.appendFrame">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#deleteFrame" class="summary-sig-name">deleteFrame</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">frameNb</span>=<span class="summary-sig-default">None</span>)</span><br />
- Method used to remove a frame from an EDF image.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.deleteFrame">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getNbFrames"></a><span class="summary-sig-name">getNbFrames</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Getter for number of frames</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getNbFrames">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setNbFrames" class="summary-sig-name">setNbFrames</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">val</span>)</span><br />
- Setter for number of frames ...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setNbFrames">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getHeader" class="summary-sig-name">getHeader</a>(<span class="summary-sig-arg">self</span>)</span><br />
- Getter for the headers.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getHeader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="setHeader"></a><span class="summary-sig-name">setHeader</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_dictHeader</span>)</span><br />
- Enforces the propagation of the header to the list of frames</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setHeader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="delHeader"></a><span class="summary-sig-name">delHeader</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Deleter for edf header</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.delHeader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getHeaderKeys"></a><span class="summary-sig-name">getHeaderKeys</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Getter for edf header_keys</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getHeaderKeys">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setHeaderKeys" class="summary-sig-name">setHeaderKeys</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_listtHeader</span>)</span><br />
- Enforces the propagation of the header_keys to the list of frames</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setHeaderKeys">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="delHeaderKeys"></a><span class="summary-sig-name">delHeaderKeys</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Deleter for edf header_keys</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.delHeaderKeys">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">numpy.ndarray</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getData" class="summary-sig-name">getData</a>(<span class="summary-sig-arg">self</span>)</span><br />
- getter for edf Data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setData" class="summary-sig-name">setData</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_data</span>)</span><br />
- Enforces the propagation of the data to the list of frames</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="delData"></a><span class="summary-sig-name">delData</span>(<span class="summary-sig-arg">self</span>)</span><br />
- deleter for edf Data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.delData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">dict</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getCapsHeader" class="summary-sig-name">getCapsHeader</a>(<span class="summary-sig-arg">self</span>)</span><br />
- getter for edf headers keys in upper case</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getCapsHeader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setCapsHeader" class="summary-sig-name">setCapsHeader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_data</span>)</span><br />
- Enforces the propagation of the header_keys to the list of frames</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setCapsHeader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="delCapsHeader"></a><span class="summary-sig-name">delCapsHeader</span>(<span class="summary-sig-arg">self</span>)</span><br />
- deleter for edf capsHeader</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.delCapsHeader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getDim1"></a><span class="summary-sig-name">getDim1</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getDim1">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="setDim1"></a><span class="summary-sig-name">setDim1</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_iVal</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setDim1">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getDim2"></a><span class="summary-sig-name">getDim2</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getDim2">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="setDim2"></a><span class="summary-sig-name">setDim2</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_iVal</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setDim2">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getDims"></a><span class="summary-sig-name">getDims</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getDims">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getByteCode"></a><span class="summary-sig-name">getByteCode</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getByteCode">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="setByteCode"></a><span class="summary-sig-name">setByteCode</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_iVal</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setByteCode">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getBpp"></a><span class="summary-sig-name">getBpp</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getBpp">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="setBpp"></a><span class="summary-sig-name">setBpp</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_iVal</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setBpp">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#checkHeader" class="summary-sig-name">checkHeader</a>(<span class="summary-sig-arg">header</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.checkHeader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#_readHeaderBlock" class="summary-sig-name" onclick="show_private();">_readHeaderBlock</a>(<span class="summary-sig-arg">infile</span>)</span><br />
- Read in a header in some EDF format from an already open file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage._readHeaderBlock">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#nframes" class="summary-name">nframes</a><br />
- Getter for number of frames
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#header" class="summary-name">header</a><br />
- property: header of EDF file
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#header_keys" class="summary-name">header_keys</a><br />
- property: header_keys of EDF file
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#data" class="summary-name">data</a><br />
- property: data of EDF file
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#capsHeader" class="summary-name">capsHeader</a><br />
- property: capsHeader of EDF file, i.e.
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#dim1" class="summary-name">dim1</a>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#dim2" class="summary-name">dim2</a>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#dims" class="summary-name">dims</a>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#bytecode" class="summary-name">bytecode</a>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.edfimage.edfimage-class.html#bpp" class="summary-name">bpp</a>
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">data</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">header</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">header_keys</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">frames</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Set up initial values</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="checkHeader"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">checkHeader</span>(<span class="sig-arg">header</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.checkHeader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Empty for fabioimage but may be populated by others classes</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#checkHeader">fabioimage.fabioimage.checkHeader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readHeaderBlock"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readHeaderBlock</span>(<span class="sig-arg">infile</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage._readHeaderBlock">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in a header in some EDF format from an already open file</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>infile</code></strong> - file object open in read mode</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>string (or None if no header was found.</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read all headers in a file and populate self.header data is not yet
- populated</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>infile</code></strong> (file object open in read mode)</li>
- </ul></dd>
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Read in header into self.header and
- the data into self.data
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="unpack"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">unpack</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.unpack">source code</a></span>
- </td>
- </tr></table>
-
- <p>Unpack a binary blob according to the specification given in the
- header and return the dataset</p>
- <dl class="fields">
- <dt>Returns:</dt>
- <dd>dataset as numpy.ndarray</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="getframe"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">getframe</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">num</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getframe">source code</a></span>
- </td>
- </tr></table>
-
- <p>returns the file numbered 'num' in the series as a fabioimage</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#getframe">fabioimage.fabioimage.getframe</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="previous"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">previous</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.previous">source code</a></span>
- </td>
- </tr></table>
-
- <p>returns the previous file in the series as a fabioimage</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#previous">fabioimage.fabioimage.previous</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="next"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">next</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.next">source code</a></span>
- </td>
- </tr></table>
-
- <p>returns the next file in the series as a fabioimage</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#next">fabioimage.fabioimage.next</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">force_type</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">fit2dMode</span>=<span class="sig-default">False</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>Try to write a file check we can write zipped also mimics that fabian
- was writing uint16 (we sometimes want floats)</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>force_type</code></strong> - can be numpy.uint16 or simply "float"</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>None</dd>
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="appendFrame"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">appendFrame</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">data</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">header</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.appendFrame">source code</a></span>
- </td>
- </tr></table>
-
- <p>Method used add a frame to an EDF file</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>frame</code></strong> (instance of Frame) - frame to append to edf image</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>None</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="deleteFrame"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">deleteFrame</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">frameNb</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.deleteFrame">source code</a></span>
- </td>
- </tr></table>
-
- <p>Method used to remove a frame from an EDF image. by default the last
- one is removed.</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>frameNb</code></strong> (integer) - frame number to remove, by default the last.</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>None</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="setNbFrames"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">setNbFrames</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">val</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setNbFrames">source code</a></span>
- </td>
- </tr></table>
-
- <p>Setter for number of frames ... should do nothing. Here just to avoid
- bugs</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="getHeader"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">getHeader</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getHeader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Getter for the headers. used by the property header,</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="setHeaderKeys"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">setHeaderKeys</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_listtHeader</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setHeaderKeys">source code</a></span>
- </td>
- </tr></table>
-
- <p>Enforces the propagation of the header_keys to the list of frames</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_listtHeader</code></strong> (python list) - list of the (ordered) keys in the header</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="getData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">getData</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getData">source code</a></span>
- </td>
- </tr></table>
-
- <p>getter for edf Data</p>
- <dl class="fields">
- <dt>Returns: numpy.ndarray</dt>
- <dd>data for current frame</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="setData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">setData</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_data</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setData">source code</a></span>
- </td>
- </tr></table>
-
- <p>Enforces the propagation of the data to the list of frames</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_data</code></strong> - numpy array representing data</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="getCapsHeader"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">getCapsHeader</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.getCapsHeader">source code</a></span>
- </td>
- </tr></table>
-
- <p>getter for edf headers keys in upper case</p>
- <dl class="fields">
- <dt>Returns: dict</dt>
- <dd>data for current frame</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="setCapsHeader"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">setCapsHeader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">_data</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.edfimage-pysrc.html#edfimage.setCapsHeader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Enforces the propagation of the header_keys to the list of frames</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_data</code></strong> - numpy array representing data</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== PROPERTY DETAILS ==================== -->
-<a name="section-PropertyDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Property Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-PropertyDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="nframes"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">nframes</h3>
- <p>Getter for number of frames</p>
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getNbFrames" class="summary-sig-name">getNbFrames</a>(<span class="summary-sig-arg">self</span>)</span>
- - Getter for number of frames
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setNbFrames" class="summary-sig-name">setNbFrames</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">val</span>)</span>
- - Setter for number of frames ...
- </dd>
- <dt>Delete Method:</dt>
- <dd class="value"><table><tr><td><pre class="variable">
-<code class="variable-quote">'</code><code class="variable-string">property: number of frames in EDF file</code><code class="variable-quote">'</code>
-</pre></td></tr></table>
-
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="header"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">header</h3>
- <p>property: header of EDF file</p>
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getHeader" class="summary-sig-name">getHeader</a>(<span class="summary-sig-arg">self</span>)</span>
- - Getter for the headers.
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setHeader" class="summary-sig-name">setHeader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_dictHeader</span>)</span>
- - Enforces the propagation of the header to the list of frames
- </dd>
- <dt>Delete Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#delHeader" class="summary-sig-name">delHeader</a>(<span class="summary-sig-arg">self</span>)</span>
- - Deleter for edf header
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="header_keys"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">header_keys</h3>
- <p>property: header_keys of EDF file</p>
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getHeaderKeys" class="summary-sig-name">getHeaderKeys</a>(<span class="summary-sig-arg">self</span>)</span>
- - Getter for edf header_keys
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setHeaderKeys" class="summary-sig-name">setHeaderKeys</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_listtHeader</span>)</span>
- - Enforces the propagation of the header_keys to the list of frames
- </dd>
- <dt>Delete Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#delHeaderKeys" class="summary-sig-name">delHeaderKeys</a>(<span class="summary-sig-arg">self</span>)</span>
- - Deleter for edf header_keys
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="data"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">data</h3>
- <p>property: data of EDF file</p>
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getData" class="summary-sig-name">getData</a>(<span class="summary-sig-arg">self</span>)</span>
- - getter for edf Data
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setData" class="summary-sig-name">setData</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_data</span>)</span>
- - Enforces the propagation of the data to the list of frames
- </dd>
- <dt>Delete Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#delData" class="summary-sig-name">delData</a>(<span class="summary-sig-arg">self</span>)</span>
- - deleter for edf Data
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="capsHeader"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">capsHeader</h3>
- <p>property: capsHeader of EDF file, i.e. the keys of the header in UPPER
- case.</p>
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getCapsHeader" class="summary-sig-name">getCapsHeader</a>(<span class="summary-sig-arg">self</span>)</span>
- - getter for edf headers keys in upper case
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setCapsHeader" class="summary-sig-name">setCapsHeader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_data</span>)</span>
- - Enforces the propagation of the header_keys to the list of frames
- </dd>
- <dt>Delete Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#delCapsHeader" class="summary-sig-name">delCapsHeader</a>(<span class="summary-sig-arg">self</span>)</span>
- - deleter for edf capsHeader
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="dim1"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">dim1</h3>
-
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getDim1" class="summary-sig-name">getDim1</a>(<span class="summary-sig-arg">self</span>)</span>
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setDim1" class="summary-sig-name">setDim1</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_iVal</span>)</span>
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="dim2"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">dim2</h3>
-
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getDim2" class="summary-sig-name">getDim2</a>(<span class="summary-sig-arg">self</span>)</span>
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setDim2" class="summary-sig-name">setDim2</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_iVal</span>)</span>
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="dims"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">dims</h3>
-
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getDims" class="summary-sig-name">getDims</a>(<span class="summary-sig-arg">self</span>)</span>
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="bytecode"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">bytecode</h3>
-
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getByteCode" class="summary-sig-name">getByteCode</a>(<span class="summary-sig-arg">self</span>)</span>
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setByteCode" class="summary-sig-name">setByteCode</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_iVal</span>)</span>
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="bpp"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">bpp</h3>
-
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#getBpp" class="summary-sig-name">getBpp</a>(<span class="summary-sig-arg">self</span>)</span>
- </dd>
- <dt>Set Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.edfimage.edfimage-class.html#setBpp" class="summary-sig-name">setBpp</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">_iVal</span>)</span>
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.fabioimage-module.html b/doc/html/fabio.fabioimage-module.html
deleted file mode 100644
index c3d937f..0000000
--- a/doc/html/fabio.fabioimage-module.html
+++ /dev/null
@@ -1,221 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fabioimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module fabioimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fabioimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module fabioimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fabioimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
- and Jon Wright, Jerome Kieffer: ESRF
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fabioimage.fabioStream-class.html" class="summary-name">fabioStream</a><br />
- just an interface providing the name and mode property to a
- StringIO
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fabioimage.fabioimage-class.html" class="summary-name">fabioimage</a><br />
- A common object for images in fable Contains a numpy array (.data)
- and dict of meta data (.header)
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Functions</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="test"></a><span class="summary-sig-name">test</span>()</span><br />
- check some basic fabioimage functionality</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#test">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("fabioimage")">logging.getLogger("fabioimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
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- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.fabioimage-pysrc.html b/doc/html/fabio.fabioimage-pysrc.html
deleted file mode 100644
index 86add7b..0000000
--- a/doc/html/fabio.fabioimage-pysrc.html
+++ /dev/null
@@ -1,1214 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fabioimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module fabioimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fabioimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.fabioimage-module.html">Module fabio.fabioimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python </tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring"> and Jon Wright, Jerome Kieffer: ESRF</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">os</tt><tt class="py-op">,</tt> <tt class="py-name">gzip</tt><tt class="py-op">,</tt> <tt class="py-name">bz2</tt><tt class="py-op">,</tt> <tt class="py-name">StringIO</tt><tt class="py-op">,</tt> <tt class="py-name">types</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">sys</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"fabioimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">Image</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt id="link-1" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-1', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"PIL is not installed ... trying to do without"</tt><tt class="py-op">)</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-name">Image</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Module fabio.fabioutils=fabio.fabioutils-module.html"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-2', 'fabioutils', 'link-2');">fabioutils</a></tt><tt class="py-op">,</tt> <tt id="link-3" class="py-name" targets="Module fabio.converters=fabio.converters-module.html"><a title="fabio.converters" class="py-na [...]
-<a name="fabioStream"></a><div id="fabioStream-def"><a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <a class="py-toggle" href="#" id="fabioStream-toggle" onclick="return toggle('fabioStream');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.fabioimage.fabioStream-class.html">fabioStream</a><tt class="py-op">(</tt><tt class="py-base-class">StringIO</tt><tt class="py-op">.</tt><tt class="py-base-class">StringIO</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioStream-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="fabioStream-expanded"><a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-docstring">""" </tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-docstring"> just an interface providing the name and mode property to a StringIO</tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-docstring"> BugFix for MacOSX</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="fabioStream.__init__"></a><div id="fabioStream.__init__-def"><a name="L32"></a><tt class="py-lineno"> 32</tt> <a class="py-toggle" href="#" id="fabioStream.__init__-toggle" onclick="return toggle('fabioStream.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioStream-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">data</tt> [...]
-</div><div id="fabioStream.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioStream.__init__-expanded"><a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-name">StringIO</tt><tt class="py-op">.</tt><tt class="py-name">StringIO</tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__ini [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-4', '__init__', 'link-4');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-5" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-5', 'data', 'link-5');">data</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">closed</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fname</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">name</tt> <tt class="py-op">=</tt> <tt class="py-string">"fabioStream"</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">name</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mode</tt> <tt class="py-op">=</tt> <tt class="py-name">mode</tt> </tt>
-</div></div><a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> </tt>
-<a name="fabioimage"></a><div id="fabioimage-def"><a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <a class="py-toggle" href="#" id="fabioimage-toggle" onclick="return toggle('fabioimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html">fabioimage</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="fabioimage-expanded"><a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt class="py-docstring"> A common object for images in fable</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"><tt class="py-docstring"> Contains a numpy array (.data) and dict of meta data (.header)</tt> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt id="link-6" class="py-name" targets="Variable fabio.GEimage.GEimage._need_a_seek_to_read=fabio.GEimage.GEimage-class.html#_need_a_seek_to_read,Variable fabio.fabioimage.fabioimage._need_a_seek_to_read=fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read,Variable fabio.tifimage.tifimage._need_a_seek_to_read=fabio.tifimage.tifimage-class.html#_need_a_seek_to_read"><a title="fabio.GEimage.GEimage._need_a_se [...]
-fabio.fabioimage.fabioimage._need_a_seek_to_read
-fabio.tifimage.tifimage._need_a_seek_to_read" class="py-name" href="#" onclick="return doclink('link-6', '_need_a_seek_to_read', 'link-6');">_need_a_seek_to_read</a></tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt id="link-7" class="py-name" targets="Variable fabio.fabioimage.fabioimage._need_a_real_file=fabio.fabioimage.fabioimage-class.html#_need_a_real_file,Variable fabio.mar345image.mar345image._need_a_real_file=fabio.mar345image.mar345image-class.html#_need_a_real_file"><a title="fabio.fabioimage.fabioimage._need_a_real_file
-fabio.mar345image.mar345image._need_a_real_file" class="py-name" href="#" onclick="return doclink('link-7', '_need_a_real_file', 'link-7');">_need_a_real_file</a></tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.__init__"></a><div id="fabioimage.__init__-def"><a name="L51"></a><tt class="py-lineno"> 51</tt> <a class="py-toggle" href="#" id="fabioimage.__init__-toggle" onclick="return toggle('fabioimage.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">data</tt><tt c [...]
-</div><div id="fabioimage.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.__init__-expanded"><a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt class="py-docstring"> Set up initial values</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_classname</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt id="link-8" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-8', 'data', 'link-5');">data</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">in</tt> <tt class="py-name">types</tt><tt class="py-op">.</tt><tt class="py-name">StringTypes</tt><tt class="py-op">:</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"fabioimage.__init__ bad argument - "</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-string">"data should be numpy array"</tt><tt class="py-op">)</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-9', 'data', 'link-5');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Static Method fabio.OXDimage.OXDimage.checkData()=fabio.OXDimage.OXDimage-class.html#checkData,Static Method fabio.cbfimage.cbfimage.checkData()=fabio.cbfimage.cbfimage-class.html#checkData,Static Method fabio.fabioimage.fabioimage.checkData()=fabio [...]
-fabio.cbfimage.cbfimage.checkData
-fabio.fabioimage.fabioimage.checkData
-fabio.fit2dmaskimage.fit2dmaskimage.checkData
-fabio.kcdimage.kcdimage.checkData
-fabio.mar345image.mar345image.checkData
-fabio.pnmimage.pnmimage.checkData" class="py-name" href="#" onclick="return doclink('link-10', 'checkData', 'link-10');">checkData</a></tt><tt class="py-op">(</tt><tt id="link-11" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-11', 'data', 'link-5');">data</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-12" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-12', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-13', 'header', 'link-12');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-14', 'header', 'link-12');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Static Method fabio.edfimage.edfimage.checkHeader()=fabio.edfim [...]
-fabio.fabioimage.fabioimage.checkHeader" class="py-name" href="#" onclick="return doclink('link-15', 'checkHeader', 'link-15');">checkHeader</a></tt><tt class="py-op">(</tt><tt id="link-16" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-16', 'header', 'link-12');">header</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimage.edfimage-class.html#header_keys"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-17', 'header_keys', 'link-17');">header_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op [...]
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-19', 'data', 'link-5');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-20', 'dim1', 'link-20');">dim1</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class=" [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-22', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-23', 'dim1', 'link-20');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="retu [...]
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-25', 'bytecode', 'link-25');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> <tt class="py-comment"># n [...]
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-26', 'bpp', 'link-26');">bpp</a></tt> <tt class="py-op">=</tt> <tt class="py-number">2</tt> <tt class="py-comment"># bytes per pixel</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-comment"># cache for image statistics</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mean</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">maxval</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stddev</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">minval</tt> < [...]
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-comment"># Cache roi</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">roi</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">area_sum</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-comment"># New for multiframe files</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name" targets="Variable fabio.edfimage.edfimage.nframes=fabio.edfimage.edfimage-class.html#nframes"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-27', 'nframes', 'link-27');">nframes</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">currentframe</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="fabioimage.checkHeader"></a><div id="fabioimage.checkHeader-def"><a name="L84"></a><tt class="py-lineno"> 84</tt> <a class="py-toggle" href="#" id="fabioimage.checkHeader-toggle" onclick="return toggle('fabioimage.checkHeader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a><tt class="py-op">(</tt><tt class="py-param">header</tt><tt class="py-op">=</tt><tt class="py-na [...]
-</div><div id="fabioimage.checkHeader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.checkHeader-expanded"><a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt class="py-docstring"> Empty for fabioimage but may be populated by others classes</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-28" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-28', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-29" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-29', 'header', 'link-12');">header</a></tt> </tt>
-</div><a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="fabioimage.checkData"></a><div id="fabioimage.checkData-def"><a name="L94"></a><tt class="py-lineno"> 94</tt> <a class="py-toggle" href="#" id="fabioimage.checkData-toggle" onclick="return toggle('fabioimage.checkData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">=</tt><tt class="py-name">None</tt>< [...]
-</div><div id="fabioimage.checkData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.checkData-expanded"><a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt class="py-docstring"> Empty for fabioimage but may be populated by others classes, especially for format accepting only integers</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-30" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-30', 'data', 'link-5');">data</a></tt> </tt>
-</div><a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.getclassname"></a><div id="fabioimage.getclassname-def"><a name="L101"></a><tt class="py-lineno">101</tt> <a class="py-toggle" href="#" id="fabioimage.getclassname-toggle" onclick="return toggle('fabioimage.getclassname');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="fabioimage.getclassname-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.getclassname-expanded"><a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"><tt class="py-docstring"> Retrieves the name of the class</tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"><tt class="py-docstring"> @return: the name of the class </tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_classname</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_classname</tt> <tt class="py-op">=</tt> <tt id="link-31" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-31', 'str', 'link-31');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">replace</tt><tt class="py-op">(</tt><tt class="py-string">"<class '"</tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">replace</tt><tt cl [...]
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_classname</tt> </tt>
-</div><a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt id="link-32" class="py-name" targets="Variable fabio.fabioimage.fabioimage.classname=fabio.fabioimage.fabioimage-class.html#classname"><a title="fabio.fabioimage.fabioimage.classname" class="py-name" href="#" onclick="return doclink('link-32', 'classname', 'link-32');">classname</a></tt> <tt class="py-op">=</tt> <tt class="py-name">property</tt><tt class="py-op">(</tt><tt id="link-33" class="py-name" tar [...]
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.getframe"></a><div id="fabioimage.getframe-def"><a name="L111"></a><tt class="py-lineno">111</tt> <a class="py-toggle" href="#" id="fabioimage.getframe-toggle" onclick="return toggle('fabioimage.getframe');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">num</tt><tt c [...]
-</div><div id="fabioimage.getframe-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.getframe-expanded"><a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the file numbered 'num' in the series as a fabioimage """</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="fabio.edfimage.edfimage.nframes" class="py-name" href="#" onclick="return doclink('link-34', 'nframes', 'link-27');">nframes</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-comment"># single image per file</tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt id="link-35" class="py-name" targets="Module fabio.openimage=fabio.openimage-module.html,Function fabio.openimage.openimage()=fabio.openimage-module.html#openimage"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-35', 'openimage', 'link-35');">openimage</a></tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-36" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-36', 'openimage', 'link-35');">openimage</a></tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-37', 'openimage', 'link-35');">openimage</a></tt><tt class="py-op">(</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt id="link-38" class="py-name"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-38', 'fabioutils', 'link-2');">fabioutils</a></tt><tt class="py-op">.</tt><tt id="link-39" class="py-name" targets="Function fabio.fabioutils.jump_filename()=fabio.fabioutils-module.html#jump_filename"><a title="fabio.fabioutils.jump_filename" class="py-name" href="#" onclick="return docl [...]
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"getframe out of range"</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.previous"></a><div id="fabioimage.previous-def"><a name="L120"></a><tt class="py-lineno">120</tt> <a class="py-toggle" href="#" id="fabioimage.previous-toggle" onclick="return toggle('fabioimage.previous');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#previous">previous</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage.previous-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.previous-expanded"><a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the previous file in the series as a fabioimage """</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt id="link-40" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-40', 'openimage', 'link-35');">openimage</a></tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-41" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-41', 'openimage', 'link-35');">openimage</a></tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-42', 'openimage', 'link-35');">openimage</a></tt><tt class="py-op">(</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-43', 'fabioutils', 'link-2');">fabioutils</a></tt><tt class="py-op">.</tt><tt id="link-44" class="py-name" targets="Function fabio.fabioutils.previous_filename()=fabio.fabioutils-module.html#previous_filename"><a title="fabio.fabioutils.previous_filename" class="py-name" href="#" onclick="ret [...]
-</div><a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.next"></a><div id="fabioimage.next-def"><a name="L126"></a><tt class="py-lineno">126</tt> <a class="py-toggle" href="#" id="fabioimage.next-toggle" onclick="return toggle('fabioimage.next');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#next">next</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage.next-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.next-expanded"><a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the next file in the series as a fabioimage """</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt id="link-45" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-45', 'openimage', 'link-35');">openimage</a></tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-46" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-46', 'openimage', 'link-35');">openimage</a></tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-47', 'openimage', 'link-35');">openimage</a></tt><tt class="py-op">(</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt id="link-48" class="py-name"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-48', 'fabioutils', 'link-2');">fabioutils</a></tt><tt class="py-op">.</tt><tt id="link-49" class="py-name" targets="Function fabio.fabioutils.next_filename()=fabio.fabioutils-module.html#next_filename"><a title="fabio.fabioutils.next_filename" class="py-name" href="#" onclick="return doclink( [...]
-</div><a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.toPIL16"></a><div id="fabioimage.toPIL16-def"><a name="L132"></a><tt class="py-lineno">132</tt> <a class="py-toggle" href="#" id="fabioimage.toPIL16-toggle" onclick="return toggle('fabioimage.toPIL16');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">filename</tt><tt cl [...]
-</div><div id="fabioimage.toPIL16-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.toPIL16-expanded"><a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"><tt class="py-docstring"> Convert to Python Imaging Library 16 bit greyscale image</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"><tt class="py-docstring"> FIXME - this should be handled by the libraries now</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">Image</tt><tt class="py-op">:</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">"PIL is not installed !!! "</tt><tt class="py-op">)</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">filename</tt><tt class="py-op">:</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDimage.read()=fabio.OXDimage.OXDimage-class.html [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-50', 'read', 'link-50');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-comment"># mode map</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-51', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-name">typmap</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-string">'float32'</tt> <tt class="py-op">:</tt> <tt class="py-string">"F"</tt> <tt class="py-op">,</tt> </tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-string">'int32'</tt> <tt class="py-op">:</tt> <tt class="py-string">"F;32S"</tt> <tt class="py-op">,</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-string">'uint32'</tt> <tt class="py-op">:</tt> <tt class="py-string">"F;32"</tt> <tt class="py-op">,</tt> </tt>
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-string">'int16'</tt> <tt class="py-op">:</tt> <tt class="py-string">"F;16S"</tt> <tt class="py-op">,</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-string">'uint16'</tt> <tt class="py-op">:</tt> <tt class="py-string">"F;16"</tt> <tt class="py-op">,</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-string">'int8'</tt> <tt class="py-op">:</tt> <tt class="py-string">"F;8S"</tt> <tt class="py-op">,</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-string">'uint8'</tt> <tt class="py-op">:</tt> <tt class="py-string">"F;8"</tt> <tt class="py-op">}</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">typmap</tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-52', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-name">mode2</tt> <tt class="py-op">=</tt> <tt class="py-name">typmap</tt><tt class="py-op">[</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-53', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">name</tt> <tt class="py-op">]</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-name">mode1</tt> <tt class="py-op">=</tt> <tt class="py-name">mode2</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Unknown numpy type "</tt> <tt class="py-op">+</tt> <tt id="link-54" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-54', 'str', 'link-31');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-55', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">type</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-comment"># </tt> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-comment"># hack for byteswapping for PIL in MacOS</tt> </tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-name">testval</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class [...]
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">testval</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-name">dats</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-56', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt id="link-57" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,Method fabio.fabioutils.filename_object.tostring()=fabio.fabioutils.filename_object-class.html#tostring"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-57', 'tostring', 'link-57');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">testval</tt> <tt class="py-op">==</tt> <tt class="py-number">256</tt><tt class="py-op">:</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-name">dats</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-58', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-59', 'tostring', 'link-57');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Endian unknown in fabioimage.toPIL16"</tt><tt class="py-op">)</tt> </tt>
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">Image</tt><tt class="py-op">.</tt><tt class="py-name">frombuffer</tt><tt class="py-op">(</tt><tt class="py-name">mode1</tt><tt class="py-op">,</tt> </tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-name">size</tt><tt class="py-op">,</tt> </tt>
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-name">dats</tt><tt class="py-op">,</tt> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-string">"raw"</tt><tt class="py-op">,</tt> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt class="py-name">mode2</tt><tt class="py-op">,</tt> </tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-number">0</tt><tt class="py-op">,</tt> </tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> </tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> </tt>
-</div><a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.getheader"></a><div id="fabioimage.getheader-def"><a name="L179"></a><tt class="py-lineno">179</tt> <a class="py-toggle" href="#" id="fabioimage.getheader-toggle" onclick="return toggle('fabioimage.getheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage.getheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.getheader-expanded"><a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-docstring">""" returns self.header """</tt> </tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-60', 'header', 'link-12');">header</a></tt> </tt>
-</div><a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.getmax"></a><div id="fabioimage.getmax-def"><a name="L183"></a><tt class="py-lineno">183</tt> <a class="py-toggle" href="#" id="fabioimage.getmax-toggle" onclick="return toggle('fabioimage.getmax');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage.getmax-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.getmax-expanded"><a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-docstring">""" Find max value in self.data, caching for the future """</tt> </tt>
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">maxval</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">maxval</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-61', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">max</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">maxval</tt> </tt>
-</div><a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.getmin"></a><div id="fabioimage.getmin-def"><a name="L189"></a><tt class="py-lineno">189</tt> <a class="py-toggle" href="#" id="fabioimage.getmin-toggle" onclick="return toggle('fabioimage.getmin');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage.getmin-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.getmin-expanded"><a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-docstring">""" Find min value in self.data, caching for the future """</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">minval</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">minval</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-62', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">min</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">minval</tt> </tt>
-</div><a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.make_slice"></a><div id="fabioimage.make_slice-def"><a name="L195"></a><tt class="py-lineno">195</tt> <a class="py-toggle" href="#" id="fabioimage.make_slice-toggle" onclick="return toggle('fabioimage.make_slice');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">c [...]
-</div><div id="fabioimage.make_slice-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.make_slice-expanded"><a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"><tt class="py-docstring"> Convert a len(4) set of coords into a len(2) </tt> </tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"><tt class="py-docstring"> tuple (pair) of slice objects</tt> </tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"><tt class="py-docstring"> the latter are immutable, meaning the roi can be cached</tt> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-63" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-63', 'len', 'link-63');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">coords</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt [...]
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-64" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-64', 'len', 'link-63');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">coords</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-comment"># fabian edfimage preference</tt> </tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">></tt> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">:</tt><tt class="py-number">3</tt><tt class="py-op">:</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="p [...]
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">></tt> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">3</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-number">2</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">3</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="p [...]
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-comment">#in fabian: normally coordinates are given as (x,y) whereas </tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-comment"># a matrix is given as row,col </tt> </tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-comment"># also the (for whichever reason) the image is flipped upside </tt> </tt>
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-comment"># down wrt to the matrix hence these tranformations</tt> </tt>
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-name">fixme</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-65" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-65', 'dim2', 'link-21');">dim2</a></tt> <tt class="py-op">-</tt> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">3</tt> [...]
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">,</tt> </tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-66', 'dim2', 'link-21');">dim2</a></tt> <tt class="py-op">-</tt> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">-</tt> <tt class="py-number" [...]
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-op">(</tt><tt class="py-name">slice</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">fixme</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">fixme</tt><tt class=" [...]
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-name">slice</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">fixme</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">fixme</tt><tt class="py-op">[</tt><tt class="py-number">3</tt><tt class [...]
-</div><a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> </tt>
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.integrate_area"></a><div id="fabioimage.integrate_area-def"><a name="L220"></a><tt class="py-lineno">220</tt> <a class="py-toggle" href="#" id="fabioimage.integrate_area-toggle" onclick="return toggle('fabioimage.integrate_area');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt [...]
-</div><div id="fabioimage.integrate_area-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.integrate_area-expanded"><a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-docstring">""" </tt> </tt>
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"><tt class="py-docstring"> Sums up a region of interest </tt> </tt>
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"><tt class="py-docstring"> if len(coords) == 4 -> convert coords to slices</tt> </tt>
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"><tt class="py-docstring"> if len(coords) == 2 -> use as slices</tt> </tt>
-<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"><tt class="py-docstring"> floor -> ? removed as unused in the function.</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-67', 'data', 'link-5');">data</a></tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-comment"># This should return NAN, not zero ?</tt> </tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-number">0</tt> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-68" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-68', 'len', 'link-63');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">coords</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-name">sli</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name" targets="Method fabio.fabioimage.fabioimage.make_slice()=fabio.fabioimage.fabioimage-class.html#make_slice"><a title="fabio.fabioimage.fabioimage.make_slice" class="py-name" href="#" onclick="return doclink('link-69', 'make_slice', 'link-69');">make_slice</a></tt><tt c [...]
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-70" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-70', 'len', 'link-63');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">coords</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt> <tt class="py-keyword">and</tt> <tt class="py-name">isinstance</tt><tt clas [...]
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">slice</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt class="py-name">sli</tt> <tt class="py-op">=</tt> <tt class="py-name">coords</tt> </tt>
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> </tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">sli</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-keyword">and</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">area_sum</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">sli</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-keyword">and</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">roi</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">area_sum</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">roi</tt><tt class="py-op">.</tt><tt class="py-name">sum</tt><tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float</tt><t [...]
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-op">=</tt> <tt class="py-name">sli</tt> </tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">roi</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-71" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-71', 'data', 'link-5');">data</a></tt><tt class="py-op">[</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-op">]</tt> </tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">area_sum</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">roi</tt><tt class="py-op">.</tt><tt class="py-name">sum</tt><tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float</tt><t [...]
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">area_sum</tt> </tt>
-</div><a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.getmean"></a><div id="fabioimage.getmean-def"><a name="L246"></a><tt class="py-lineno">246</tt> <a class="py-toggle" href="#" id="fabioimage.getmean-toggle" onclick="return toggle('fabioimage.getmean');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage.getmean-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.getmean-expanded"><a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-docstring">""" return the mean """</tt> </tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mean</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mean</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-72', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">mean</tt><tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">double</tt><tt class="py-op">)</tt> </tt>
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mean</tt> </tt>
-</div><a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.getstddev"></a><div id="fabioimage.getstddev-def"><a name="L252"></a><tt class="py-lineno">252</tt> <a class="py-toggle" href="#" id="fabioimage.getstddev-toggle" onclick="return toggle('fabioimage.getstddev');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage.getstddev-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.getstddev-expanded"><a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-docstring">""" return the standard deviation """</tt> </tt>
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stddev</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stddev</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-73', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">std</tt><tt class="py-op">(</tt><tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">double</tt><tt class="py-op">)</tt> </tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stddev</tt> </tt>
-</div><a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.add"></a><div id="fabioimage.add-def"><a name="L258"></a><tt class="py-lineno">258</tt> <a class="py-toggle" href="#" id="fabioimage.add-toggle" onclick="return toggle('fabioimage.add');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#add">add</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">other</tt><tt class="py-op">)</tt><tt class [...]
-</div><div id="fabioimage.add-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.add-expanded"><a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"><tt class="py-docstring"> Add another Image - warning, does not clip to 16 bit images by default</tt> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">other</tt><tt class="py-op">,</tt> <tt class="py-string">'data'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt id="link-74" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-74', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">'edfimage.add() called with something that '</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-string">'does not have a data field'</tt><tt class="py-op">)</tt> </tt>
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-75', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">==</tt> <tt class="py-name">other</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-76', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">,</tt> \ </tt>
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-string">'incompatible images - Do they have the same size?'</tt> </tt>
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-77', 'data', 'link-5');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-78', 'data', 'link-5');">data</a></tt> <tt class="py-op">+</tt> <tt class="py-name">other</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-79', 'data', 'link-5');">data</a></tt> </tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-80', 'resetvals', 'link-80');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.resetvals"></a><div id="fabioimage.resetvals-def"><a name="L271"></a><tt class="py-lineno">271</tt> <a class="py-toggle" href="#" id="fabioimage.resetvals-toggle" onclick="return toggle('fabioimage.resetvals');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage.resetvals-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.resetvals-expanded"><a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-docstring">""" Reset cache - call on changing data """</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">mean</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stddev</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">maxval</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">minval</tt> [...]
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">roi</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">area_sum</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.rebin"></a><div id="fabioimage.rebin-def"><a name="L276"></a><tt class="py-lineno">276</tt> <a class="py-toggle" href="#" id="fabioimage.rebin-toggle" onclick="return toggle('fabioimage.rebin');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">x_rebin_fact</tt><tt class="py- [...]
-</div><div id="fabioimage.rebin-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.rebin-expanded"><a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-docstring">""" </tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"><tt class="py-docstring"> Rebin the data and adjust dims </tt> </tt>
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"><tt class="py-docstring"> @param x_rebin_fact: x binning factor</tt> </tt>
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"><tt class="py-docstring"> @param y_rebin_fact: y binning factor</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"><tt class="py-docstring"> @param keep_I: shall the signal increase ?</tt> </tt>
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"><tt class="py-docstring"> @type x_rebin_fact: int</tt> </tt>
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"><tt class="py-docstring"> @type y_rebin_fact: int</tt> </tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"><tt class="py-docstring"> @type keep_I: boolean</tt> </tt>
-<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-81" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-81', 'data', 'link-5');">data</a></tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">'Please read in the file you wish to rebin first'</tt><tt class="py-op">)</tt> </tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> </tt>
-<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-82', 'dim1', 'link-20');">dim1</a></tt> <tt class="py-op">%</tt> <tt class="py-name">x_rebin_fact</tt> <tt class="py-op">!=</tt> <tt class="py-number">0</tt><tt class="py-op">)< [...]
-<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">RuntimeError</tt><tt class="py-op">(</tt><tt class="py-string">'image size is not divisible by rebin factor - '</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-string">'skipping rebin'</tt><tt class="py-op">)</tt> </tt>
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt class="py-name">dataIn</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-84', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"float64"</tt><tt class="py-op">)</tt> </tt>
-<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-name">shapeIn</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-85" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-85', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-name">shapeOut</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">shapeIn</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">/</tt> <tt class="py-name">y_rebin_fact</tt><tt class="py-op">,</tt> <tt class="py-name">shapeIn</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">/</ [...]
-<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt class="py-name">binsize</tt> <tt class="py-op">=</tt> <tt class="py-name">y_rebin_fact</tt> <tt class="py-op">*</tt> <tt class="py-name">x_rebin_fact</tt> </tt>
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">binsize</tt> <tt class="py-op"><</tt> <tt class="py-number">50</tt><tt class="py-op">:</tt> <tt class="py-comment">#method faster for small binning (4x4)</tt> </tt>
-<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-name">shapeOut</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"float64"</tt><tt class="py-op">)</tt> </tt>
-<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">j</tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">x_rebin_fact</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-86" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-86', 'i', 'link-86');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">y_rebin_fact</tt><tt class="py-op">)</tt><t [...]
-<a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">+=</tt> <tt class="py-name">dataIn</tt><tt class="py-op">[</tt><tt id="link-87" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-87', 'i', 'link-86');">i</a></tt><tt class="py-op">:</tt><tt class="py-op">:</tt><tt class="py-name">y_rebin_fact</tt><tt class="py-op">,</tt> <tt class="py-name">j</tt> [...]
-<a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-comment">#method faster for large binning (8x8)</tt> </tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> <tt class="py-name">temp</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-88" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-88', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-string">"float64"</tt><tt class="py-op">)</tt> </tt>
-<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"> <tt class="py-name">temp</tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">shapeOut</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">y_rebin_fact</tt><tt class="py-op">,</tt> <tt class="py-name">shapeOut</tt><tt class="py-op">[</tt><tt class="py-numbe [...]
-<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-name">temp</tt><tt class="py-op">.</tt><tt class="py-name">sum</tt><tt class="py-op">(</tt><tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="py-number">3</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">sum</tt><tt class="py-op">(</tt><tt class="py-name">axis</tt><tt class="py-op">=</tt><tt class="p [...]
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-89" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-89', 'resetvals', 'link-80');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">keep_I</tt><tt class="py-op">:</tt> </tt>
-<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-90', 'data', 'link-5');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">out</tt> <tt class="py-op">/</tt> <tt class="py-op">(</tt><tt class="py-name">y_rebin_fact</tt> <tt class="py-op">*</tt> <tt class="py-name">x_rebin_fact</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py- [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-91', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-92" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-92', 'data', 'link-5');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">out</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-93', 'data', 'link-5');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt> </tt>
-<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> </tt>
-<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-94" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-94', 'dim1', 'link-20');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-95" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return [...]
-<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-96', 'dim2', 'link-21');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-97" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return [...]
-<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> </tt>
-<a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> <tt class="py-comment">#update header</tt> </tt>
-<a name="L318"></a><tt class="py-lineno">318</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-98" class="py-name" targets="Method fabio.fabioimage.fabioimage.update_header()=fabio.fabioimage.fabioimage-class.html#update_header"><a title="fabio.fabioimage.fabioimage.update_header" class="py-name" href="#" onclick="return doclink('link-98', 'update_header', 'link-98');">update_header</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L319"></a><tt class="py-lineno">319</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.write"></a><div id="fabioimage.write-def"><a name="L320"></a><tt class="py-lineno">320</tt> <a class="py-toggle" href="#" id="fabioimage.write-toggle" onclick="return toggle('fabioimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">)</ [...]
-</div><div id="fabioimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.write-expanded"><a name="L321"></a><tt class="py-lineno">321</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L322"></a><tt class="py-lineno">322</tt> <tt class="py-line"><tt class="py-docstring"> To be overwritten - write the file</tt> </tt>
-<a name="L323"></a><tt class="py-lineno">323</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L324"></a><tt class="py-lineno">324</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Class has not implemented readheader method yet"</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L325"></a><tt class="py-lineno">325</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.save"></a><div id="fabioimage.save-def"><a name="L326"></a><tt class="py-lineno">326</tt> <a class="py-toggle" href="#" id="fabioimage.save-toggle" onclick="return toggle('fabioimage.save');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#save">save</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">)</tt><tt [...]
-</div><div id="fabioimage.save-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.save-expanded"><a name="L327"></a><tt class="py-lineno">327</tt> <tt class="py-line"> <tt class="py-docstring">'wrapper for write'</tt> </tt>
-<a name="L328"></a><tt class="py-lineno">328</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-99" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryimage-cla [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-99', 'write', 'link-99');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L329"></a><tt class="py-lineno">329</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.readheader"></a><div id="fabioimage.readheader-def"><a name="L330"></a><tt class="py-lineno">330</tt> <a class="py-toggle" href="#" id="fabioimage.readheader-toggle" onclick="return toggle('fabioimage.readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">f [...]
-</div><div id="fabioimage.readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.readheader-expanded"><a name="L331"></a><tt class="py-lineno">331</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L332"></a><tt class="py-lineno">332</tt> <tt class="py-line"><tt class="py-docstring"> Call the _readheader function...</tt> </tt>
-<a name="L333"></a><tt class="py-lineno">333</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L334"></a><tt class="py-lineno">334</tt> <tt class="py-line"> <tt class="py-comment"># Override the needs asserting that all headers can be read via python modules</tt> </tt>
-<a name="L335"></a><tt class="py-lineno">335</tt> <tt class="py-line"> <tt class="py-name">save_state</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="fabio.fabioimage.fabioimage._need_a_real_file
-fabio.mar345image.mar345image._need_a_real_file" class="py-name" href="#" onclick="return doclink('link-100', '_need_a_real_file', 'link-7');">_need_a_real_file</a></tt> <tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-101" class="py-name"><a title="fabio.GEimage.GEimage._need_a_seek_to_read
-fabio.fabioimage.fabioimage._need_a_seek_to_read
-fabio.tifimage.tifimage._need_a_seek_to_read" class="py-name" href="#" onclick="return doclink('link-101', '_need_a_seek_to_read', 'link-6');">_need_a_seek_to_read</a></tt> </tt>
-<a name="L336"></a><tt class="py-lineno">336</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-102" class="py-name"><a title="fabio.fabioimage.fabioimage._need_a_real_file
-fabio.mar345image.mar345image._need_a_real_file" class="py-name" href="#" onclick="return doclink('link-102', '_need_a_real_file', 'link-7');">_need_a_real_file</a></tt> <tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-103" class="py-name"><a title="fabio.GEimage.GEimage._need_a_seek_to_read
-fabio.fabioimage.fabioimage._need_a_seek_to_read
-fabio.tifimage.tifimage._need_a_seek_to_read" class="py-name" href="#" onclick="return doclink('link-103', '_need_a_seek_to_read', 'link-6');">_need_a_seek_to_read</a></tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt><tt class="py-op">,</tt> <tt class="py-name">False</tt> </tt>
-<a name="L337"></a><tt class="py-lineno">337</tt> <tt class="py-line"> <tt class="py-name">fin</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-104" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-104', '_open', 'link-104');">_open</a></tt><tt class="py-op">(</tt><tt cla [...]
-<a name="L338"></a><tt class="py-lineno">338</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-105" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._r [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-105', '_readheader', 'link-105');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">fin</tt><tt class="py-op">)</tt> </tt>
-<a name="L339"></a><tt class="py-lineno">339</tt> <tt class="py-line"> <tt class="py-name">fin</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L340"></a><tt class="py-lineno">340</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-106" class="py-name"><a title="fabio.fabioimage.fabioimage._need_a_real_file
-fabio.mar345image.mar345image._need_a_real_file" class="py-name" href="#" onclick="return doclink('link-106', '_need_a_real_file', 'link-7');">_need_a_real_file</a></tt> <tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-107" class="py-name"><a title="fabio.GEimage.GEimage._need_a_seek_to_read
-fabio.fabioimage.fabioimage._need_a_seek_to_read
-fabio.tifimage.tifimage._need_a_seek_to_read" class="py-name" href="#" onclick="return doclink('link-107', '_need_a_seek_to_read', 'link-6');">_need_a_seek_to_read</a></tt> <tt class="py-op">=</tt> <tt class="py-name">save_state</tt> </tt>
-</div><a name="L341"></a><tt class="py-lineno">341</tt> <tt class="py-line"> </tt>
-<a name="fabioimage._readheader"></a><div id="fabioimage._readheader-def"><a name="L342"></a><tt class="py-lineno">342</tt> <a class="py-toggle" href="#" id="fabioimage._readheader-toggle" onclick="return toggle('fabioimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-pa [...]
-</div><div id="fabioimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage._readheader-expanded"><a name="L343"></a><tt class="py-lineno">343</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L344"></a><tt class="py-lineno">344</tt> <tt class="py-line"><tt class="py-docstring"> Must be overridden in classes</tt> </tt>
-<a name="L345"></a><tt class="py-lineno">345</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L346"></a><tt class="py-lineno">346</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Class has not implemented _readheader method yet"</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L347"></a><tt class="py-lineno">347</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.update_header"></a><div id="fabioimage.update_header-def"><a name="L348"></a><tt class="py-lineno">348</tt> <a class="py-toggle" href="#" id="fabioimage.update_header-toggle" onclick="return toggle('fabioimage.update_header');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a><tt class="py-op">(</tt><tt class="py-param">self</tt> <tt class="py-op">,</tt> <tt [...]
-</div><div id="fabioimage.update_header-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.update_header-expanded"><a name="L349"></a><tt class="py-lineno">349</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L350"></a><tt class="py-lineno">350</tt> <tt class="py-line"><tt class="py-docstring"> update the header entries</tt> </tt>
-<a name="L351"></a><tt class="py-lineno">351</tt> <tt class="py-line"><tt class="py-docstring"> by default pass in a dict of key, values.</tt> </tt>
-<a name="L352"></a><tt class="py-lineno">352</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L353"></a><tt class="py-lineno">353</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-108" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-108', 'header', 'link-12');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">update</tt><tt class="py-op">(</tt><tt class="py-name">kwds</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L354"></a><tt class="py-lineno">354</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.read"></a><div id="fabioimage.read-def"><a name="L355"></a><tt class="py-lineno">355</tt> <a class="py-toggle" href="#" id="fabioimage.read-toggle" onclick="return toggle('fabioimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">filename</tt><tt class="py-op">,</tt> [...]
-</div><div id="fabioimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.read-expanded"><a name="L356"></a><tt class="py-lineno">356</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L357"></a><tt class="py-lineno">357</tt> <tt class="py-line"><tt class="py-docstring"> To be overridden - fill in self.header and self.data</tt> </tt>
-<a name="L358"></a><tt class="py-lineno">358</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L359"></a><tt class="py-lineno">359</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Class has not implemented read method yet"</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L360"></a><tt class="py-lineno">360</tt> <tt class="py-line"><tt class="py-comment"># return self</tt> </tt>
-<a name="L361"></a><tt class="py-lineno">361</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.load"></a><div id="fabioimage.load-def"><a name="L362"></a><tt class="py-lineno">362</tt> <a class="py-toggle" href="#" id="fabioimage.load-toggle" onclick="return toggle('fabioimage.load');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#load">load</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-param">arg</tt><tt c [...]
-</div><div id="fabioimage.load-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.load-expanded"><a name="L363"></a><tt class="py-lineno">363</tt> <tt class="py-line"> <tt class="py-docstring">"Wrapper for read"</tt> </tt>
-<a name="L364"></a><tt class="py-lineno">364</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-109" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-109', 'read', 'link-50');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">*</tt><tt class="py-name">arg</tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">kwarg</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L365"></a><tt class="py-lineno">365</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.readROI"></a><div id="fabioimage.readROI-def"><a name="L366"></a><tt class="py-lineno">366</tt> <a class="py-toggle" href="#" id="fabioimage.readROI-toggle" onclick="return toggle('fabioimage.readROI');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">filename</tt><tt cl [...]
-</div><div id="fabioimage.readROI-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.readROI-expanded"><a name="L367"></a><tt class="py-lineno">367</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L368"></a><tt class="py-lineno">368</tt> <tt class="py-line"><tt class="py-docstring"> Method reading Region of Interest.</tt> </tt>
-<a name="L369"></a><tt class="py-lineno">369</tt> <tt class="py-line"><tt class="py-docstring"> This implementation is the trivial one, just doing read and crop</tt> </tt>
-<a name="L370"></a><tt class="py-lineno">370</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L371"></a><tt class="py-lineno">371</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-110" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-110', 'read', 'link-50');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-name">frame</tt><tt class="py-op">)</tt> </tt>
-<a name="L372"></a><tt class="py-lineno">372</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-111" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-111', 'len', 'link-63');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">coord</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt> </tt>
-<a name="L373"></a><tt class="py-lineno">373</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-112" class="py-name"><a title="fabio.fabioimage.fabioimage.make_slice" class="py-name" href="#" onclick="return doclink('link-112', 'make_slice', 'link-69');">make_slice</a></tt><tt class="py-op">(</tt><tt class="py-name">coords</tt>< [...]
-<a name="L374"></a><tt class="py-lineno">374</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-113" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-113', 'len', 'link-63');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">coords</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt> <tt class="py-keyword">and</tt> <tt class="py-name">isinstance</tt><tt cl [...]
-<a name="L375"></a><tt class="py-lineno">375</tt> <tt class="py-line"> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">coords</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">slice</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L376"></a><tt class="py-lineno">376</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-op">=</tt> <tt class="py-name">coords</tt> </tt>
-<a name="L377"></a><tt class="py-lineno">377</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L378"></a><tt class="py-lineno">378</tt> <tt class="py-line"> <tt id="link-114" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-114', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">'readROI: Unable to understand Region Of Interest: got %s'</tt><tt class="py-op">,</tt> <tt class="py-name">coords</tt><tt class="py-op">)</tt> </tt>
-<a name="L379"></a><tt class="py-lineno">379</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">roi</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-115" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-115', 'data', 'link-5');">data</a></tt><tt class="py-op">[</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">slice</tt> <tt class="py-op">]</tt> </tt>
-<a name="L380"></a><tt class="py-lineno">380</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">roi</tt> </tt>
-</div><a name="L381"></a><tt class="py-lineno">381</tt> <tt class="py-line"> </tt>
-<a name="L382"></a><tt class="py-lineno">382</tt> <tt class="py-line"> </tt>
-<a name="fabioimage._open"></a><div id="fabioimage._open-def"><a name="L383"></a><tt class="py-lineno">383</tt> <a class="py-toggle" href="#" id="fabioimage._open-toggle" onclick="return toggle('fabioimage._open');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#_open">_open</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</ [...]
-</div><div id="fabioimage._open-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage._open-expanded"><a name="L384"></a><tt class="py-lineno">384</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L385"></a><tt class="py-lineno">385</tt> <tt class="py-line"><tt class="py-docstring"> Try to handle compressed files, streams, shared memory etc</tt> </tt>
-<a name="L386"></a><tt class="py-lineno">386</tt> <tt class="py-line"><tt class="py-docstring"> Return an object which can be used for "read" and "write" </tt> </tt>
-<a name="L387"></a><tt class="py-lineno">387</tt> <tt class="py-line"><tt class="py-docstring"> ... FIXME - what about seek ? </tt> </tt>
-<a name="L388"></a><tt class="py-lineno">388</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L389"></a><tt class="py-lineno">389</tt> <tt class="py-line"> <tt class="py-name">fileObject</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L390"></a><tt class="py-lineno">390</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L391"></a><tt class="py-lineno">391</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-string">"read"</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-string">"write"</tt><tt class="py-op">)</tt><tt class="p [...]
-<a name="L392"></a><tt class="py-lineno">392</tt> <tt class="py-line"> <tt class="py-comment"># It is already something we can use</tt> </tt>
-<a name="L393"></a><tt class="py-lineno">393</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L394"></a><tt class="py-lineno">394</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt id="link-116" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-116', 'str', 'link-31');">str</a></tt><tt class="py-op">,</tt> <tt class="py-name">unicode</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L395"></a><tt class="py-lineno">395</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-117" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-117', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"filename"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L396"></a><tt class="py-lineno">396</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">splitext</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">".gz"</tt><tt class="py-op">:</tt> </tt>
-<a name="L397"></a><tt class="py-lineno">397</tt> <tt class="py-line"> <tt class="py-name">fileObject</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-118" class="py-name" targets="Method fabio.fabioimage.fabioimage._compressed_stream()=fabio.fabioimage.fabioimage-class.html#_compressed_stream"><a title="fabio.fabioimage.fabioimage._compressed_stream" class="py-name" href="#" onclick="return doclink('link-118', '_compressed_s [...]
-<a name="L398"></a><tt class="py-lineno">398</tt> <tt class="py-line"> <tt id="link-119" class="py-name"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-119', 'fabioutils', 'link-2');">fabioutils</a></tt><tt class="py-op">.</tt><tt id="link-120" class="py-name" targets="Variable fabio.fabioutils.COMPRESSORS=fabio.fabioutils-module.html#COMPRESSORS"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" on [...]
-<a name="L399"></a><tt class="py-lineno">399</tt> <tt class="py-line"> <tt class="py-name">gzip</tt><tt class="py-op">.</tt><tt class="py-name">GzipFile</tt><tt class="py-op">,</tt> </tt>
-<a name="L400"></a><tt class="py-lineno">400</tt> <tt class="py-line"> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L401"></a><tt class="py-lineno">401</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">splitext</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'.bz2'</tt><tt class="py-op">:</tt> </tt>
-<a name="L402"></a><tt class="py-lineno">402</tt> <tt class="py-line"> <tt class="py-name">fileObject</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-121" class="py-name"><a title="fabio.fabioimage.fabioimage._compressed_stream" class="py-name" href="#" onclick="return doclink('link-121', '_compressed_stream', 'link-118');">_compressed_stream</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</ [...]
-<a name="L403"></a><tt class="py-lineno">403</tt> <tt class="py-line"> <tt id="link-122" class="py-name"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-122', 'fabioutils', 'link-2');">fabioutils</a></tt><tt class="py-op">.</tt><tt id="link-123" class="py-name"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" onclick="return doclink('link-123', 'COMPRESSORS', 'link-120');">COMPRESSORS</a></tt><tt cl [...]
-<a name="L404"></a><tt class="py-lineno">404</tt> <tt class="py-line"> <tt class="py-name">bz2</tt><tt class="py-op">.</tt><tt class="py-name">BZ2File</tt><tt class="py-op">,</tt> </tt>
-<a name="L405"></a><tt class="py-lineno">405</tt> <tt class="py-line"> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L406"></a><tt class="py-lineno">406</tt> <tt class="py-line"> <tt class="py-comment">#</tt> </tt>
-<a name="L407"></a><tt class="py-lineno">407</tt> <tt class="py-line"> <tt class="py-comment"># Here we return the file even though it may be bzipped or gzipped</tt> </tt>
-<a name="L408"></a><tt class="py-lineno">408</tt> <tt class="py-line"> <tt class="py-comment"># but named incorrectly...</tt> </tt>
-<a name="L409"></a><tt class="py-lineno">409</tt> <tt class="py-line"> <tt class="py-comment">#</tt> </tt>
-<a name="L410"></a><tt class="py-lineno">410</tt> <tt class="py-line"> <tt class="py-comment"># FIXME - should we fix that or complain about the daft naming?</tt> </tt>
-<a name="L411"></a><tt class="py-lineno">411</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L412"></a><tt class="py-lineno">412</tt> <tt class="py-line"> <tt class="py-name">fileObject</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L413"></a><tt class="py-lineno">413</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"name"</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">dir</tt><tt class="py-op">(</tt><tt class="py-name">fileObject</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L414"></a><tt class="py-lineno">414</tt> <tt class="py-line"> <tt class="py-name">fileObject</tt><tt class="py-op">.</tt><tt class="py-name">name</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L415"></a><tt class="py-lineno">415</tt> <tt class="py-line"> </tt>
-<a name="L416"></a><tt class="py-lineno">416</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">fileObject</tt> </tt>
-</div><a name="L417"></a><tt class="py-lineno">417</tt> <tt class="py-line"> </tt>
-<a name="fabioimage._compressed_stream"></a><div id="fabioimage._compressed_stream-def"><a name="L418"></a><tt class="py-lineno">418</tt> <a class="py-toggle" href="#" id="fabioimage._compressed_stream-toggle" onclick="return toggle('fabioimage._compressed_stream');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#_compressed_stream">_compressed_stream</a><tt class="py-op">(</tt><tt class="py-param">self</tt [...]
-<a name="L419"></a><tt class="py-lineno">419</tt> <tt class="py-line"> <tt class="py-param">fname</tt><tt class="py-op">,</tt> </tt>
-<a name="L420"></a><tt class="py-lineno">420</tt> <tt class="py-line"> <tt class="py-param">system_uncompress</tt><tt class="py-op">,</tt> </tt>
-<a name="L421"></a><tt class="py-lineno">421</tt> <tt class="py-line"> <tt class="py-param">python_uncompress</tt><tt class="py-op">,</tt> </tt>
-<a name="L422"></a><tt class="py-lineno">422</tt> <tt class="py-line"> <tt class="py-param">mode</tt><tt class="py-op">=</tt><tt class="py-string">'rb'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fabioimage._compressed_stream-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage._compressed_stream-expanded"><a name="L423"></a><tt class="py-lineno">423</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L424"></a><tt class="py-lineno">424</tt> <tt class="py-line"><tt class="py-docstring"> Try to transparently handle gzip / bzip without always getting python </tt> </tt>
-<a name="L425"></a><tt class="py-lineno">425</tt> <tt class="py-line"><tt class="py-docstring"> performance</tt> </tt>
-<a name="L426"></a><tt class="py-lineno">426</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L427"></a><tt class="py-lineno">427</tt> <tt class="py-line"> <tt class="py-comment"># assert that python modules are always OK based on performance benchmark</tt> </tt>
-<a name="L428"></a><tt class="py-lineno">428</tt> <tt class="py-line"> <tt class="py-comment"># Try to fix the way we are using them?</tt> </tt>
-<a name="L429"></a><tt class="py-lineno">429</tt> <tt class="py-line"> <tt class="py-name">fobj</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L430"></a><tt class="py-lineno">430</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-124" class="py-name"><a title="fabio.fabioimage.fabioimage._need_a_real_file
-fabio.mar345image.mar345image._need_a_real_file" class="py-name" href="#" onclick="return doclink('link-124', '_need_a_real_file', 'link-7');">_need_a_real_file</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">mode</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"r"</tt><tt class="py-op">:</tt> </tt>
-<a name="L431"></a><tt class="py-lineno">431</tt> <tt class="py-line"> <tt class="py-name">fo</tt> <tt class="py-op">=</tt> <tt class="py-name">python_uncompress</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L432"></a><tt class="py-lineno">432</tt> <tt class="py-line"> <tt class="py-name">fobj</tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">tmpfile</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L433"></a><tt class="py-lineno">433</tt> <tt class="py-line"> <tt class="py-name">fobj</tt><tt class="py-op">.</tt><tt id="link-125" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-125', 'write', 'link-99');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">fo</tt><tt class="py-op">.</tt><tt id="link-126" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-126', 'read', 'link-50');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L434"></a><tt class="py-lineno">434</tt> <tt class="py-line"> <tt class="py-name">fo</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L435"></a><tt class="py-lineno">435</tt> <tt class="py-line"> <tt class="py-name">fobj</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L436"></a><tt class="py-lineno">436</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-127" class="py-name"><a title="fabio.GEimage.GEimage._need_a_seek_to_read
-fabio.fabioimage.fabioimage._need_a_seek_to_read
-fabio.tifimage.tifimage._need_a_seek_to_read" class="py-name" href="#" onclick="return doclink('link-127', '_need_a_seek_to_read', 'link-6');">_need_a_seek_to_read</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">mode</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"r"</tt><tt class="py-op">:</tt> </tt>
-<a name="L437"></a><tt class="py-lineno">437</tt> <tt class="py-line"> <tt class="py-name">fo</tt> <tt class="py-op">=</tt> <tt class="py-name">python_uncompress</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L438"></a><tt class="py-lineno">438</tt> <tt class="py-line"> <tt class="py-name">fobj</tt> <tt class="py-op">=</tt> <tt id="link-128" class="py-name" targets="Class fabio.fabioimage.fabioStream=fabio.fabioimage.fabioStream-class.html"><a title="fabio.fabioimage.fabioStream" class="py-name" href="#" onclick="return doclink('link-128', 'fabioStream', 'link-128');">fabioStream</a></tt><tt class="py-op">(</tt><tt class="py-name">fo</tt><tt class="py-op">.</tt><tt id="li [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-129', 'read', 'link-50');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L439"></a><tt class="py-lineno">439</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L440"></a><tt class="py-lineno">440</tt> <tt class="py-line"> <tt class="py-name">fobj</tt> <tt class="py-op">=</tt> <tt class="py-name">python_uncompress</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">)</tt> </tt>
-<a name="L441"></a><tt class="py-lineno">441</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">fobj</tt> </tt>
-</div><a name="L442"></a><tt class="py-lineno">442</tt> <tt class="py-line"> </tt>
-<a name="fabioimage.convert"></a><div id="fabioimage.convert-def"><a name="L443"></a><tt class="py-lineno">443</tt> <a class="py-toggle" href="#" id="fabioimage.convert-toggle" onclick="return toggle('fabioimage.convert');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage.fabioimage-class.html#convert">convert</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">dest</tt><tt class= [...]
-</div><div id="fabioimage.convert-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="fabioimage.convert-expanded"><a name="L444"></a><tt class="py-lineno">444</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L445"></a><tt class="py-lineno">445</tt> <tt class="py-line"><tt class="py-docstring"> Convert a fabioimage object into another fabioimage object (with possible conversions)</tt> </tt>
-<a name="L446"></a><tt class="py-lineno">446</tt> <tt class="py-line"><tt class="py-docstring"> @param dest: destination type "EDF", "edfimage" or the class itself </tt> </tt>
-<a name="L447"></a><tt class="py-lineno">447</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L448"></a><tt class="py-lineno">448</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">dest</tt><tt class="py-op">)</tt> <tt class="py-keyword">in</tt> <tt class="py-name">types</tt><tt class="py-op">.</tt><tt class="py-name">StringTypes</tt><tt class="py-op">:</tt> </tt>
-<a name="L449"></a><tt class="py-lineno">449</tt> <tt class="py-line"> <tt class="py-name">dest</tt> <tt class="py-op">=</tt> <tt class="py-name">dest</tt><tt class="py-op">.</tt><tt class="py-name">lower</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L450"></a><tt class="py-lineno">450</tt> <tt class="py-line"> <tt class="py-name">modules</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L451"></a><tt class="py-lineno">451</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">val</tt> <tt class="py-keyword">in</tt> <tt id="link-130" class="py-name"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-130', 'fabioutils', 'link-2');">fabioutils</a></tt><tt class="py-op">.</tt><tt id="link-131" class="py-name" targets="Variable fabio.fabioutils.FILETYPES=fabio.fabioutils-module.html#FILETYPES"><a ti [...]
-<a name="L452"></a><tt class="py-lineno">452</tt> <tt class="py-line"> <tt class="py-name">modules</tt> <tt class="py-op">+=</tt> <tt class="py-op">[</tt><tt id="link-132" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-132', 'i', 'link-86');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-string">"image"</tt> <tt class="py-keyword">for</tt> <tt id="link-133" class="py-name"><a title="fabio.fabioutils.i" class="py-na [...]
-<a name="L453"></a><tt class="py-lineno">453</tt> <tt class="py-line"> <tt class="py-name">klass</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L454"></a><tt class="py-lineno">454</tt> <tt class="py-line"> <tt class="py-name">module</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L455"></a><tt class="py-lineno">455</tt> <tt class="py-line"> <tt class="py-name">klass_name</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L456"></a><tt class="py-lineno">456</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">klass_name</tt> <tt class="py-keyword">in</tt> <tt class="py-name">modules</tt><tt class="py-op">:</tt> </tt>
-<a name="L457"></a><tt class="py-lineno">457</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">klass_name</tt><tt class="py-op">.</tt><tt class="py-name">startswith</tt><tt class="py-op">(</tt><tt class="py-name">dest</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L458"></a><tt class="py-lineno">458</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L459"></a><tt class="py-lineno">459</tt> <tt class="py-line"> <tt class="py-name">module</tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">modules</tt><tt class="py-op">[</tt><tt class="py-string">"fabio."</tt> <tt class="py-op">+</tt> <tt class="py-name">klass_name</tt><tt class="py-op">]</tt> </tt>
-<a name="L460"></a><tt class="py-lineno">460</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
-<a name="L461"></a><tt class="py-lineno">461</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L462"></a><tt class="py-lineno">462</tt> <tt class="py-line"> <tt class="py-name">module</tt> <tt class="py-op">=</tt> <tt class="py-name">__import__</tt><tt class="py-op">(</tt><tt class="py-name">klass_name</tt><tt class="py-op">)</tt> </tt>
-<a name="L463"></a><tt class="py-lineno">463</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L464"></a><tt class="py-lineno">464</tt> <tt class="py-line"> <tt id="link-135" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-135', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Failed to import %s"</tt><tt class="py-op">,</tt> <tt class="py-name">klass_name</tt><tt class="py-op">)</tt> </tt>
-<a name="L465"></a><tt class="py-lineno">465</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L466"></a><tt class="py-lineno">466</tt> <tt class="py-line"> <tt id="link-136" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-136', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"imported %simage"</tt><tt class="py-op">,</tt> <tt class="py-name">klass_name</tt><tt class="py-op">)</tt> </tt>
-<a name="L467"></a><tt class="py-lineno">467</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">module</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L468"></a><tt class="py-lineno">468</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L469"></a><tt class="py-lineno">469</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">module</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L470"></a><tt class="py-lineno">470</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">module</tt><tt class="py-op">,</tt> <tt class="py-name">klass_name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L471"></a><tt class="py-lineno">471</tt> <tt class="py-line"> <tt class="py-name">klass</tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt class="py-name">module</tt><tt class="py-op">,</tt> <tt class="py-name">klass_name</tt><tt class="py-op">)</tt> </tt>
-<a name="L472"></a><tt class="py-lineno">472</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L473"></a><tt class="py-lineno">473</tt> <tt class="py-line"> <tt id="link-137" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-137', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Module %s has no image class"</tt> <tt class="py-op">%</tt> <tt class="py-name">module</tt><tt class="py-op">)</tt> </tt>
-<a name="L474"></a><tt class="py-lineno">474</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">dest</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L475"></a><tt class="py-lineno">475</tt> <tt class="py-line"> <tt class="py-name">klass</tt> <tt class="py-op">=</tt> <tt class="py-name">dest</tt><tt class="py-op">.</tt><tt class="py-name">__class__</tt> </tt>
-<a name="L476"></a><tt class="py-lineno">476</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt class="py-string">"__new__"</tt> <tt class="py-keyword">in</tt> <tt class="py-name">dir</tt><tt class="py-op">(</tt><tt class="py-name">dest</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">dest</tt><tt class="py-op">(</tt><tt class="py- [...]
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-138', 'fabioimage', 'link-138');">fabioimage</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L477"></a><tt class="py-lineno">477</tt> <tt class="py-line"> <tt class="py-name">klass</tt> <tt class="py-op">=</tt> <tt class="py-name">dest</tt> </tt>
-<a name="L478"></a><tt class="py-lineno">478</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L479"></a><tt class="py-lineno">479</tt> <tt class="py-line"> <tt id="link-139" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-139', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Unrecognized destination format: %s "</tt> <tt class="py-op">%</tt> <tt class="py-name">dest</tt><tt class="py-op">)</tt> </tt>
-<a name="L480"></a><tt class="py-lineno">480</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-<a name="L481"></a><tt class="py-lineno">481</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">klass</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L482"></a><tt class="py-lineno">482</tt> <tt class="py-line"> <tt id="link-140" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-140', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Unrecognized destination format: %s "</tt> <tt class="py-op">%</tt> <tt class="py-name">dest</tt><tt class="py-op">)</tt> </tt>
-<a name="L483"></a><tt class="py-lineno">483</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-<a name="L484"></a><tt class="py-lineno">484</tt> <tt class="py-line"> <tt class="py-name">other</tt> <tt class="py-op">=</tt> <tt class="py-name">klass</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-comment">#temporary instance (to be overwritten)</tt> </tt>
-<a name="L485"></a><tt class="py-lineno">485</tt> <tt class="py-line"> <tt class="py-name">other</tt> <tt class="py-op">=</tt> <tt class="py-name">klass</tt><tt class="py-op">(</tt><tt id="link-141" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-141', 'data', 'link-5');">data</a></tt><tt class="py-op">=</tt><tt id="link-142" class="py-name"><a title="fabio.converters" class="py-name" href="#" onclick="return doclink('link-142', 'converters', 'link-3');">converters</a></tt><tt class="py-op">.</tt><tt id="link-143" class="py-name" targets="Function fabio.converters.convert_data()=fabio.converters-module.html#convert_data"><a title="fabio.converter [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-146', 'data', 'link-5');">data</a></tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L486"></a><tt class="py-lineno">486</tt> <tt class="py-line"> <tt id="link-147" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-147', 'header', 'link-12');">header</a></tt><tt class="py-op">=</tt><tt id="link-148" class="py-name"><a title="fabio.converters" class="py-name" href="#" onclick="return doclink('link-148', 'converters', 'link-3');">converters</a></tt><tt class="py-op">.</tt><tt id="li [...]
-<a name="L487"></a><tt class="py-lineno">487</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">other</tt> </tt>
-</div></div><a name="L488"></a><tt class="py-lineno">488</tt> <tt class="py-line"> </tt>
-<a name="test"></a><div id="test-def"><a name="L489"></a><tt class="py-lineno">489</tt> <a class="py-toggle" href="#" id="test-toggle" onclick="return toggle('test');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioimage-module.html#test">test</a><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="test-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="test-expanded"><a name="L490"></a><tt class="py-lineno">490</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L491"></a><tt class="py-lineno">491</tt> <tt class="py-line"><tt class="py-docstring"> check some basic fabioimage functionality</tt> </tt>
-<a name="L492"></a><tt class="py-lineno">492</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L493"></a><tt class="py-lineno">493</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">time</tt> </tt>
-<a name="L494"></a><tt class="py-lineno">494</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">time</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L495"></a><tt class="py-lineno">495</tt> <tt class="py-line"> </tt>
-<a name="L496"></a><tt class="py-lineno">496</tt> <tt class="py-line"> <tt class="py-name">dat</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">ones</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">1024</tt><tt class="py-op">,</tt> <tt class="py-number">1024</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class=" [...]
-<a name="L497"></a><tt class="py-lineno">497</tt> <tt class="py-line"> <tt class="py-name">dat</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">dat</tt> <tt class="py-op">*</tt> <tt class="py-number">50000</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L498"></a><tt class="py-lineno">498</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">dat</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">char</tt> <tt class="py-op">==</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">ones</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="p [...]
-<a name="L499"></a><tt class="py-lineno">499</tt> <tt class="py-line"> <tt class="py-name">hed</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">"Title"</tt><tt class="py-op">:</tt><tt class="py-string">"50000 everywhere"</tt><tt class="py-op">}</tt> </tt>
-<a name="L500"></a><tt class="py-lineno">500</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-153" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-153', 'fabioimage', 'link-138');">fabioimage</a></tt><tt class="py-op">(</tt><tt class="py-name">dat</tt><tt class="py-op">,</tt> <tt class="py-name">hed</tt><tt class="py-op">)</tt> </tt>
-<a name="L501"></a><tt class="py-lineno">501</tt> <tt class="py-line"> </tt>
-<a name="L502"></a><tt class="py-lineno">502</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-154" class="py-name" targets="Method fabio.fabioimage.fabioimage.getmax()=fabio.fabioimage.fabioimage-class.html#getmax"><a title="fabio.fabioimage.fabioimage.getmax" class="py-name" href="#" onclick="return doclink('link-154', 'getmax', 'link-154');">getmax</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> < [...]
-<a name="L503"></a><tt class="py-lineno">503</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-155" class="py-name" targets="Method fabio.fabioimage.fabioimage.getmin()=fabio.fabioimage.fabioimage-class.html#getmin"><a title="fabio.fabioimage.fabioimage.getmin" class="py-name" href="#" onclick="return doclink('link-155', 'getmin', 'link-155');">getmin</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> < [...]
-<a name="L504"></a><tt class="py-lineno">504</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-156" class="py-name" targets="Method fabio.fabioimage.fabioimage.getmean()=fabio.fabioimage.fabioimage-class.html#getmean"><a title="fabio.fabioimage.fabioimage.getmean" class="py-name" href="#" onclick="return doclink('link-156', 'getmean', 'link-156');">getmean</a></tt><tt class="py-op">(</tt><tt class="py-op">)</ [...]
-<a name="L505"></a><tt class="py-lineno">505</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-158" class="py-name" targets="Method fabio.fabioimage.fabioimage.getstddev()=fabio.fabioimage.fabioimage-class.html#getstddev"><a title="fabio.fabioimage.fabioimage.getstddev" class="py-name" href="#" onclick="return doclink('link-158', 'getstddev', 'link-158');">getstddev</a></tt><tt class="py-op">(</tt><tt class=" [...]
-<a name="L506"></a><tt class="py-lineno">506</tt> <tt class="py-line"> </tt>
-<a name="L507"></a><tt class="py-lineno">507</tt> <tt class="py-line"> <tt class="py-name">dat2</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">1024</tt><tt class="py-op">,</tt> <tt class="py-number">1024</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class [...]
-<a name="L508"></a><tt class="py-lineno">508</tt> <tt class="py-line"> <tt class="py-name">cord</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> <tt class="py-number">256</tt><tt class="py-op">,</tt> <tt class="py-number">256</tt><tt class="py-op">,</tt> <tt class="py-number">790</tt><tt class="py-op">,</tt> <tt class="py-number">768</tt> <tt class="py-op">]</tt> </tt>
-<a name="L509"></a><tt class="py-lineno">509</tt> <tt class="py-line"> <tt class="py-name">slic</tt> <tt class="py-op">=</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-159" class="py-name"><a title="fabio.fabioimage.fabioimage.make_slice" class="py-name" href="#" onclick="return doclink('link-159', 'make_slice', 'link-69');">make_slice</a></tt><tt class="py-op">(</tt><tt class="py-name">cord</tt><tt class="py-op">)</tt> </tt>
-<a name="L510"></a><tt class="py-lineno">510</tt> <tt class="py-line"> <tt class="py-name">dat2</tt><tt class="py-op">[</tt><tt class="py-name">slic</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">dat2</tt><tt class="py-op">[</tt><tt class="py-name">slic</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-number">100</tt> </tt>
-<a name="L511"></a><tt class="py-lineno">511</tt> <tt class="py-line"> </tt>
-<a name="L512"></a><tt class="py-lineno">512</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-160" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-160', 'fabioimage', 'link-138');">fabioimage</a></tt><tt class="py-op">(</tt><tt class="py-name">dat2</tt><tt class="py-op">,</tt> <tt class="py-name">hed</tt><tt class="py-op">)</tt> </tt>
-<a name="L513"></a><tt class="py-lineno">513</tt> <tt class="py-line"> </tt>
-<a name="L514"></a><tt class="py-lineno">514</tt> <tt class="py-line"> <tt class="py-comment"># New object, so...</tt> </tt>
-<a name="L515"></a><tt class="py-lineno">515</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">maxval</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt> </tt>
-<a name="L516"></a><tt class="py-lineno">516</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">minval</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt> </tt>
-<a name="L517"></a><tt class="py-lineno">517</tt> <tt class="py-line"> </tt>
-<a name="L518"></a><tt class="py-lineno">518</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-161" class="py-name"><a title="fabio.fabioimage.fabioimage.getmax" class="py-name" href="#" onclick="return doclink('link-161', 'getmax', 'link-154');">getmax</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">100</tt><tt class="py-op">,</tt> <tt class="py-name"> [...]
-<a name="L519"></a><tt class="py-lineno">519</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-163" class="py-name"><a title="fabio.fabioimage.fabioimage.getmin" class="py-name" href="#" onclick="return doclink('link-163', 'getmin', 'link-155');">getmin</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt> <tt class="py-op">,</tt> <tt class="py-name">o [...]
-<a name="L520"></a><tt class="py-lineno">520</tt> <tt class="py-line"> <tt class="py-name">npix</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">slic</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">stop</tt> <tt class="py-op">-</tt> <tt class="py-name">slic</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">start [...]
-<a name="L521"></a><tt class="py-lineno">521</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-165" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-165', 'resetvals', 'link-80');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L522"></a><tt class="py-lineno">522</tt> <tt class="py-line"> <tt class="py-name">area1</tt> <tt class="py-op">=</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-166" class="py-name" targets="Method fabio.fabioimage.fabioimage.integrate_area()=fabio.fabioimage.fabioimage-class.html#integrate_area"><a title="fabio.fabioimage.fabioimage.integrate_area" class="py-name" href="#" onclick="return doclink('link-166', 'integrate_area', 'link-166');">integrate_ar [...]
-<a name="L523"></a><tt class="py-lineno">523</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-167" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-167', 'resetvals', 'link-80');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L524"></a><tt class="py-lineno">524</tt> <tt class="py-line"> <tt class="py-name">area2</tt> <tt class="py-op">=</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-168" class="py-name"><a title="fabio.fabioimage.fabioimage.integrate_area" class="py-name" href="#" onclick="return doclink('link-168', 'integrate_area', 'link-166');">integrate_area</a></tt><tt class="py-op">(</tt><tt class="py-name">slic</tt><tt class="py-op">)</tt> </tt>
-<a name="L525"></a><tt class="py-lineno">525</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">area1</tt> <tt class="py-op">==</tt> <tt class="py-name">area2</tt> </tt>
-<a name="L526"></a><tt class="py-lineno">526</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-169" class="py-name"><a title="fabio.fabioimage.fabioimage.integrate_area" class="py-name" href="#" onclick="return doclink('link-169', 'integrate_area', 'link-166');">integrate_area</a></tt><tt class="py-op">(</tt><tt class="py-name">cord</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">ob [...]
-<a name="L527"></a><tt class="py-lineno">527</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-171" class="py-name"><a title="fabio.fabioimage.fabioimage.integrate_area" class="py-name" href="#" onclick="return doclink('link-171', 'integrate_area', 'link-166');">integrate_area</a></tt><tt class="py-op">(</tt><tt class="py-name">cord</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">np [...]
-<a name="L528"></a><tt class="py-lineno">528</tt> <tt class="py-line"> </tt>
-<a name="L529"></a><tt class="py-lineno">529</tt> <tt class="py-line"> </tt>
-<a name="L530"></a><tt class="py-lineno">530</tt> <tt class="py-line"> <tt class="py-keyword">def</tt> <tt class="py-def-name">clean</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L531"></a><tt class="py-lineno">531</tt> <tt class="py-line"> <tt class="py-docstring">""" clean up the created testfiles"""</tt> </tt>
-<a name="L532"></a><tt class="py-lineno">532</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">name</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">"testfile"</tt><tt class="py-op">,</tt> <tt class="py-string">"testfile.gz"</tt><tt class="py-op">,</tt> <tt class="py-string">"testfile.bz2"</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L533"></a><tt class="py-lineno">533</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L534"></a><tt class="py-lineno">534</tt> <tt class="py-line"> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L535"></a><tt class="py-lineno">535</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L536"></a><tt class="py-lineno">536</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-</div><a name="L537"></a><tt class="py-lineno">537</tt> <tt class="py-line"> </tt>
-<a name="L538"></a><tt class="py-lineno">538</tt> <tt class="py-line"> </tt>
-<a name="L539"></a><tt class="py-lineno">539</tt> <tt class="py-line"> <tt class="py-name">clean</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L540"></a><tt class="py-lineno">540</tt> <tt class="py-line"> </tt>
-<a name="L541"></a><tt class="py-lineno">541</tt> <tt class="py-line"> <tt class="py-name">gzip</tt><tt class="py-op">.</tt><tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-string">"testfile.gz"</tt><tt class="py-op">,</tt> <tt class="py-string">"wb"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-173" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-173', 'write', 'link-99');">write</a></tt><tt class="py-op">(</tt><tt class="py-string">"{ hello }"</tt><tt class="py-op">)</tt> </tt>
-<a name="L542"></a><tt class="py-lineno">542</tt> <tt class="py-line"> <tt class="py-name">fout</tt> <tt class="py-op">=</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-174" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-174', '_open', 'link-104');">_open</a></tt><tt class="py-op">(</tt><tt class="py-string">"testfile.gz"</tt><tt class="py-op">)</tt> </tt>
-<a name="L543"></a><tt class="py-lineno">543</tt> <tt class="py-line"> <tt class="py-name">readin</tt> <tt class="py-op">=</tt> <tt class="py-name">fout</tt><tt class="py-op">.</tt><tt id="link-175" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-175', 'read', 'link-50');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L544"></a><tt class="py-lineno">544</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">readin</tt> <tt class="py-op">==</tt> <tt class="py-string">"{ hello }"</tt><tt class="py-op">,</tt> <tt class="py-name">readin</tt> <tt class="py-op">+</tt> <tt class="py-string">" gzipped file"</tt> </tt>
-<a name="L545"></a><tt class="py-lineno">545</tt> <tt class="py-line"> </tt>
-<a name="L546"></a><tt class="py-lineno">546</tt> <tt class="py-line"> </tt>
-<a name="L547"></a><tt class="py-lineno">547</tt> <tt class="py-line"> <tt class="py-name">bz2</tt><tt class="py-op">.</tt><tt class="py-name">BZ2File</tt><tt class="py-op">(</tt><tt class="py-string">"testfilebz"</tt><tt class="py-op">,</tt> <tt class="py-string">"wb"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-176" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-176', 'write', 'link-99');">write</a></tt><tt class="py-op">(</tt><tt class="py-string">"{ hello }"</tt><tt class="py-op">)</tt> </tt>
-<a name="L548"></a><tt class="py-lineno">548</tt> <tt class="py-line"> <tt class="py-name">fout</tt> <tt class="py-op">=</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-177" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-177', '_open', 'link-104');">_open</a></tt><tt class="py-op">(</tt><tt class="py-string">"testfile.bz2"</tt><tt class="py-op">)</tt> </tt>
-<a name="L549"></a><tt class="py-lineno">549</tt> <tt class="py-line"> <tt class="py-name">readin</tt> <tt class="py-op">=</tt> <tt class="py-name">fout</tt><tt class="py-op">.</tt><tt id="link-178" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-178', 'read', 'link-50');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L550"></a><tt class="py-lineno">550</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">readin</tt> <tt class="py-op">==</tt> <tt class="py-string">"{ hello }"</tt><tt class="py-op">,</tt> <tt class="py-name">readin</tt> <tt class="py-op">+</tt> <tt class="py-string">" bzipped file"</tt> </tt>
-<a name="L551"></a><tt class="py-lineno">551</tt> <tt class="py-line"> </tt>
-<a name="L552"></a><tt class="py-lineno">552</tt> <tt class="py-line"> <tt class="py-name">ftest</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-string">"testfile"</tt><tt class="py-op">,</tt> <tt class="py-string">"wb"</tt><tt class="py-op">)</tt> </tt>
-<a name="L553"></a><tt class="py-lineno">553</tt> <tt class="py-line"> <tt class="py-name">ftest</tt><tt class="py-op">.</tt><tt id="link-179" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-179', 'write', 'link-99');">write</a></tt><tt class="py-op">(</tt><tt class="py-string">"{ hello }"</tt><tt class="py-op">)</tt> </tt>
-<a name="L554"></a><tt class="py-lineno">554</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">ftest</tt> <tt class="py-op">==</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-180" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-180', '_open', 'link-104');">_open</a></tt><tt class="py-op">(</tt><tt class="py-name">ftest</tt><tt class="py-op">)</tt> </tt>
-<a name="L555"></a><tt class="py-lineno">555</tt> <tt class="py-line"> <tt class="py-name">ftest</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L556"></a><tt class="py-lineno">556</tt> <tt class="py-line"> <tt class="py-name">fout</tt> <tt class="py-op">=</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-181" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-181', '_open', 'link-104');">_open</a></tt><tt class="py-op">(</tt><tt class="py-string">"testfile"</tt><tt class="py-op">)</tt> </tt>
-<a name="L557"></a><tt class="py-lineno">557</tt> <tt class="py-line"> <tt class="py-name">readin</tt> <tt class="py-op">=</tt> <tt class="py-name">fout</tt><tt class="py-op">.</tt><tt id="link-182" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-182', 'read', 'link-50');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L558"></a><tt class="py-lineno">558</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">readin</tt> <tt class="py-op">==</tt> <tt class="py-string">"{ hello }"</tt><tt class="py-op">,</tt> <tt class="py-name">readin</tt> <tt class="py-op">+</tt> <tt class="py-string">"plain file"</tt> </tt>
-<a name="L559"></a><tt class="py-lineno">559</tt> <tt class="py-line"> <tt class="py-name">fout</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L560"></a><tt class="py-lineno">560</tt> <tt class="py-line"> <tt class="py-name">ftest</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L561"></a><tt class="py-lineno">561</tt> <tt class="py-line"> <tt class="py-name">clean</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L562"></a><tt class="py-lineno">562</tt> <tt class="py-line"> </tt>
-<a name="L563"></a><tt class="py-lineno">563</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-string">"Passed in"</tt><tt class="py-op">,</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">time</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-name">start</tt><tt class="py-op">,</tt> <tt class="py-string">"s"</tt> </tt>
-</div><a name="L564"></a><tt class="py-lineno">564</tt> <tt class="py-line"> </tt>
-<a name="L565"></a><tt class="py-lineno">565</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">'__main__'</tt><tt class="py-op">:</tt> </tt>
-<a name="L566"></a><tt class="py-lineno">566</tt> <tt class="py-line"> <tt id="link-183" class="py-name" targets="Function fabio.adscimage.test()=fabio.adscimage-module.html#test,Function fabio.brukerimage.test()=fabio.brukerimage-module.html#test,Function fabio.fabioimage.test()=fabio.fabioimage-module.html#test"><a title="fabio.adscimage.test
-fabio.brukerimage.test
-fabio.fabioimage.test" class="py-name" href="#" onclick="return doclink('link-183', 'test', 'link-183');">test</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L567"></a><tt class="py-lineno">567</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
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- <th> <a
- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:28 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.fabioimage.fabioStream-class.html b/doc/html/fabio.fabioimage.fabioStream-class.html
deleted file mode 100644
index 6b9cef1..0000000
--- a/doc/html/fabio.fabioimage.fabioStream-class.html
+++ /dev/null
@@ -1,218 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fabioimage.fabioStream</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.fabioimage-module.html">Module fabioimage</a> ::
- Class fabioStream
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fabioimage.fabioStream-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class fabioStream</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioStream">source code</a></span></p>
-<pre class="base-tree">
-StringIO.StringIO --+
- |
- <strong class="uidshort">fabioStream</strong>
-</pre>
-
-<hr />
-<p>just an interface providing the name and mode property to a
- StringIO</p>
- <p>BugFix for MacOSX</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioimage.fabioStream-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">data</span>,
- <span class="summary-sig-arg">fname</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">mode</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">r</code><code class="variable-quote">'</code></span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioStream.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>StringIO.StringIO</code></b>:
- <code>__iter__</code>,
- <code>close</code>,
- <code>flush</code>,
- <code>getvalue</code>,
- <code>isatty</code>,
- <code>next</code>,
- <code>read</code>,
- <code>readline</code>,
- <code>readlines</code>,
- <code>seek</code>,
- <code>tell</code>,
- <code>truncate</code>,
- <code>write</code>,
- <code>writelines</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">data</span>,
- <span class="sig-arg">fname</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">mode</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">r</code><code class="variable-quote">'</code></span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioStream.__init__">source code</a></span>
- </td>
- </tr></table>
-
-
- <dl class="fields">
- <dt>Overrides:
- StringIO.StringIO.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.fabioimage.fabioimage-class.html b/doc/html/fabio.fabioimage.fabioimage-class.html
deleted file mode 100644
index 9e09208..0000000
--- a/doc/html/fabio.fabioimage.fabioimage-class.html
+++ /dev/null
@@ -1,991 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fabioimage.fabioimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.fabioimage-module.html">Module fabioimage</a> ::
- Class fabioimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fabioimage.fabioimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class fabioimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <strong class="uidshort">fabioimage</strong>
-</pre>
-
-<dl><dt>Known Subclasses:</dt>
-<dd>
- <ul class="subclass-list">
-<li><a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html">fit2dmaskimage.fit2dmaskimage</a></li><li>, <a href="fabio.tifimage.tifimage-class.html">tifimage.tifimage</a></li><li>, <a href="fabio.brukerimage.brukerimage-class.html">brukerimage.brukerimage</a></li><li>, <a href="fabio.binaryimage.binaryimage-class.html">binaryimage.binaryimage</a></li><li>, <a href="fabio.xsdimage.xsdimage-class.html">xsdimage.xsdimage</a></li><li>, <a href="fabio.GEimage.GEimage-class.html">GEimage.GEim [...]
-</dd></dl>
-
-<hr />
-<p>A common object for images in fable Contains a numpy array (.data) and
- dict of meta data (.header)</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioimage.fabioimage-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">header</span>=<span class="summary-sig-default">None</span>)</span><br />
- Set up initial values</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioimage.fabioimage-class.html#getclassname" class="summary-sig-name">getclassname</a>(<span class="summary-sig-arg">self</span>)</span><br />
- Retrieves the name of the class</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.getclassname">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getframe"></a><span class="summary-sig-name">getframe</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- returns the file numbered 'num' in the series as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.getframe">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="previous"></a><span class="summary-sig-name">previous</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the previous file in the series as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.previous">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="next"></a><span class="summary-sig-name">next</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the next file in the series as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.next">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioimage.fabioimage-class.html#toPIL16" class="summary-sig-name">toPIL16</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filename</span>=<span class="summary-sig-default">None</span>)</span><br />
- Convert to Python Imaging Library 16 bit greyscale image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.toPIL16">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getheader"></a><span class="summary-sig-name">getheader</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns self.header</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.getheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getmax"></a><span class="summary-sig-name">getmax</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Find max value in self.data, caching for the future</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.getmax">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getmin"></a><span class="summary-sig-name">getmin</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Find min value in self.data, caching for the future</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.getmin">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="make_slice"></a><span class="summary-sig-name">make_slice</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">coords</span>)</span><br />
- Convert a len(4) set of coords into a len(2) tuple (pair) of slice
- objects the latter are immutable, meaning the roi can be cached</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.make_slice">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="integrate_area"></a><span class="summary-sig-name">integrate_area</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">coords</span>)</span><br />
- Sums up a region of interest if len(coords) == 4 -> convert coords
- to slices if len(coords) == 2 -> use as slices floor -> ?
- removed as unused in the function.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.integrate_area">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getmean"></a><span class="summary-sig-name">getmean</span>(<span class="summary-sig-arg">self</span>)</span><br />
- return the mean</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.getmean">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getstddev"></a><span class="summary-sig-name">getstddev</span>(<span class="summary-sig-arg">self</span>)</span><br />
- return the standard deviation</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.getstddev">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="add"></a><span class="summary-sig-name">add</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">other</span>)</span><br />
- Add another Image - warning, does not clip to 16 bit images by
- default</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.add">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="resetvals"></a><span class="summary-sig-name">resetvals</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Reset cache - call on changing data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.resetvals">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioimage.fabioimage-class.html#rebin" class="summary-sig-name">rebin</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">x_rebin_fact</span>,
- <span class="summary-sig-arg">y_rebin_fact</span>,
- <span class="summary-sig-arg">keep_I</span>=<span class="summary-sig-default">True</span>)</span><br />
- Rebin the data and adjust dims</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.rebin">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="write"></a><span class="summary-sig-name">write</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- To be overwritten - write the file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="save"></a><span class="summary-sig-name">save</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- wrapper for write</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.save">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="readheader"></a><span class="summary-sig-name">readheader</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filename</span>)</span><br />
- Call the _readheader function...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_readheader"></a><span class="summary-sig-name">_readheader</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fik_obj</span>)</span><br />
- Must be overridden in classes</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="update_header"></a><span class="summary-sig-name">update_header</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">**kwds</span>)</span><br />
- update the header entries by default pass in a dict of key, values.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.update_header">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="read"></a><span class="summary-sig-name">read</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filename</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- To be overridden - fill in self.header and self.data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="load"></a><span class="summary-sig-name">load</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">*arg</span>,
- <span class="summary-sig-arg">**kwarg</span>)</span><br />
- Wrapper for read</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.load">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioimage.fabioimage-class.html#readROI" class="summary-sig-name">readROI</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filename</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">coords</span>=<span class="summary-sig-default">None</span>)</span><br />
- Method reading Region of Interest.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.readROI">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioimage.fabioimage-class.html#_open" class="summary-sig-name" onclick="show_private();">_open</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">mode</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">rb</code><code class="variable-quote">'</code></span>)</span><br />
- Try to handle compressed files, streams, shared memory etc Return an
- object which can be used for "read" and "write"
- ...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage._open">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_compressed_stream"></a><span class="summary-sig-name">_compressed_stream</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">system_uncompress</span>,
- <span class="summary-sig-arg">python_uncompress</span>,
- <span class="summary-sig-arg">mode</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">rb</code><code class="variable-quote">'</code></span>)</span><br />
- Try to transparently handle gzip / bzip without always getting python
- performance</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage._compressed_stream">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioimage.fabioimage-class.html#convert" class="summary-sig-name">convert</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">dest</span>)</span><br />
- Convert a fabioimage object into another fabioimage object (with
- possible conversions)</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.convert">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="checkHeader"></a><span class="summary-sig-name">checkHeader</span>(<span class="summary-sig-arg">header</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="checkData"></a><span class="summary-sig-name">checkData</span>(<span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="_need_a_seek_to_read"></a><span class="summary-name">_need_a_seek_to_read</span> = <code title="False">False</code>
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="_need_a_real_file"></a><span class="summary-name">_need_a_real_file</span> = <code title="False">False</code>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fabioimage.fabioimage-class.html#classname" class="summary-name">classname</a><br />
- Retrieves the name of the class
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">data</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">header</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Set up initial values</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="getclassname"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">getclassname</span>(<span class="sig-arg">self</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.getclassname">source code</a></span>
- </td>
- </tr></table>
-
- <p>Retrieves the name of the class</p>
- <dl class="fields">
- <dt>Returns:</dt>
- <dd>the name of the class</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="toPIL16"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">toPIL16</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">filename</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.toPIL16">source code</a></span>
- </td>
- </tr></table>
-
- <p>Convert to Python Imaging Library 16 bit greyscale image</p>
- <p>FIXME - this should be handled by the libraries now</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="rebin"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">rebin</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">x_rebin_fact</span>,
- <span class="sig-arg">y_rebin_fact</span>,
- <span class="sig-arg">keep_I</span>=<span class="sig-default">True</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.rebin">source code</a></span>
- </td>
- </tr></table>
-
- <p>Rebin the data and adjust dims</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>x_rebin_fact</code></strong> (int) - x binning factor</li>
- <li><strong class="pname"><code>y_rebin_fact</code></strong> (int) - y binning factor</li>
- <li><strong class="pname"><code>keep_I</code></strong> (boolean) - shall the signal increase ?</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="readROI"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">readROI</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">filename</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">coords</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.readROI">source code</a></span>
- </td>
- </tr></table>
-
- <p>Method reading Region of Interest. This implementation is the trivial
- one, just doing read and crop</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="_open"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_open</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">mode</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">rb</code><code class="variable-quote">'</code></span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage._open">source code</a></span>
- </td>
- </tr></table>
-
- <p>Try to handle compressed files, streams, shared memory etc Return an
- object which can be used for "read" and "write" ...
- FIXME - what about seek ?</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="convert"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">convert</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">dest</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioimage-pysrc.html#fabioimage.convert">source code</a></span>
- </td>
- </tr></table>
-
- <p>Convert a fabioimage object into another fabioimage object (with
- possible conversions)</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>dest</code></strong> - destination type "EDF", "edfimage" or the
- class itself</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== PROPERTY DETAILS ==================== -->
-<a name="section-PropertyDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Property Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-PropertyDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="classname"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">classname</h3>
- <p>Retrieves the name of the class</p>
- <dl class="fields">
- <dt>Get Method:</dt>
- <dd class="value"><span class="summary-sig"><a href="fabio.fabioimage.fabioimage-class.html#getclassname" class="summary-sig-name">getclassname</a>(<span class="summary-sig-arg">self</span>)</span>
- - Retrieves the name of the class
- </dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- // -->
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diff --git a/doc/html/fabio.fabioutils-module.html b/doc/html/fabio.fabioutils-module.html
deleted file mode 100644
index 48c8a3f..0000000
--- a/doc/html/fabio.fabioutils-module.html
+++ /dev/null
@@ -1,598 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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- <title>fabio.fabioutils</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
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- alink="#204080">
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- <a href="fabio-module.html">Package fabio</a> ::
- Module fabioutils
- </span>
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- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fabioutils-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module fabioutils</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fabioutils-pysrc.html">source code</a></span></p>
-<p>General purpose utilities functions for fabio</p>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
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- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fabioutils.filename_object-class.html" class="summary-name">filename_object</a><br />
- The 'meaning' of a filename
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Functions</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="getnum"></a><span class="summary-sig-name">getnum</span>(<span class="summary-sig-arg">name</span>)</span><br />
- # try to figure out a file number # guess it starts at the back</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#getnum">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="numstem"></a><span class="summary-sig-name">numstem</span>(<span class="summary-sig-arg">name</span>)</span><br />
- cant see how to do without reversing strings Match 1 or more digits
- going backwards from the end of the string</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#numstem">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="deconstruct_filename"></a><span class="summary-sig-name">deconstruct_filename</span>(<span class="summary-sig-arg">filename</span>)</span><br />
- Break up a filename to get image type and number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#deconstruct_filename">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="construct_filename"></a><span class="summary-sig-name">construct_filename</span>(<span class="summary-sig-arg">filename</span>,
- <span class="summary-sig-arg">frame</span>)</span><br />
- Try to construct the filename for a given frame</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#construct_filename">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="next_filename"></a><span class="summary-sig-name">next_filename</span>(<span class="summary-sig-arg">name</span>,
- <span class="summary-sig-arg">padding</span>=<span class="summary-sig-default">True</span>)</span><br />
- increment number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#next_filename">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="previous_filename"></a><span class="summary-sig-name">previous_filename</span>(<span class="summary-sig-arg">name</span>,
- <span class="summary-sig-arg">padding</span>=<span class="summary-sig-default">True</span>)</span><br />
- decrement number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#previous_filename">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="jump_filename"></a><span class="summary-sig-name">jump_filename</span>(<span class="summary-sig-arg">name</span>,
- <span class="summary-sig-arg">num</span>,
- <span class="summary-sig-arg">padding</span>=<span class="summary-sig-default">True</span>)</span><br />
- jump to number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#jump_filename">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="extract_filenumber"></a><span class="summary-sig-name">extract_filenumber</span>(<span class="summary-sig-arg">name</span>)</span><br />
- extract file number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#extract_filenumber">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioutils-module.html#isAscii" class="summary-sig-name">isAscii</a>(<span class="summary-sig-arg">name</span>,
- <span class="summary-sig-arg">listExcluded</span>=<span class="summary-sig-default">None</span>)</span><br />
- Returns:
- True of False whether name is pure ascii or not</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#isAscii">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fabioutils-module.html#toAscii" class="summary-sig-name">toAscii</a>(<span class="summary-sig-arg">name</span>,
- <span class="summary-sig-arg">excluded</span>=<span class="summary-sig-default">None</span>)</span><br />
- Returns:
- the name with all non valid char removed</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#toAscii">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("fabioutils")">logging.getLogger("fabioutils")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fabioutils-module.html#FILETYPES" class="summary-name">FILETYPES</a> = <code title="{'cbf': ['cbf'],
- 'cbf.bz2': ['cbf'],
- 'cbf.gz': ['cbf'],
- 'cor': ['edf'],
- 'cor.bz2': ['edf'],
- 'cor.gz': ['edf'],
- 'dm3': ['dm3'],
- 'dm3.bz2': ['dm3'],
-..."><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">cbf</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">cbf</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">cbf.bz2</co [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="COMPRESSORS"></a><span class="summary-name">COMPRESSORS</span> = <code title="{'.bz2': 'bzip2 -dc ', '.gz': 'gzip -dc '}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">.bz2</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">bzip2 -dc </code><code class="variable-quote">'</code><code class="variable-op">, </code><code clas [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fabioutils-module.html#dictAscii" class="summary-name">dictAscii</a> = <code title="{None: [' ',
- '!',
- '"',
- '#',
- '$',
- '%',
- '&',
- '\'',
-..."><code class="variable-group">{</code>None<code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string"> </code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">!</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">"</code> [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fabioutils-module.html#lines" class="summary-name">lines</a> = <code title="'''bzip2, a block-sorting file compressor. Version 1.0.5, 10-Dec-2007\
-.
-
- usage: bzip2 [flags and input files in any order]
-
- -h --help print this message
- -d --decompress force decompression
- -z --compress force compression
-..."><code class="variable-quote">'</code><code class="variable-string">bzip2, a block-sorting file compressor. Version 1.0.</code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="i"></a><span class="summary-name">i</span> = <code title="126">126</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="key"></a><span class="summary-name">key</span> = <code title="'cbf'"><code class="variable-quote">'</code><code class="variable-string">cbf</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTION DETAILS ==================== -->
-<a name="section-FunctionDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Function Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-FunctionDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="isAscii"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">isAscii</span>(<span class="sig-arg">name</span>,
- <span class="sig-arg">listExcluded</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioutils-pysrc.html#isAscii">source code</a></span>
- </td>
- </tr></table>
-
-
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>name</code></strong> - string to check</li>
- <li><strong class="pname"><code>listExcluded</code></strong> - list of char or string excluded.</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>True of False whether name is pure ascii or not</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="toAscii"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">toAscii</span>(<span class="sig-arg">name</span>,
- <span class="sig-arg">excluded</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fabioutils-pysrc.html#toAscii">source code</a></span>
- </td>
- </tr></table>
-
-
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>name</code></strong> - string to check</li>
- <li><strong class="pname"><code>excluded</code></strong> - tuple of char or string excluded (not list: they are mutable).</li>
- </ul></dd>
- <dt>Returns:</dt>
- <dd>the name with all non valid char removed</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="FILETYPES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">FILETYPES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">cbf</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">cbf</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">cbf.bz2</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">cbf</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">cbf.gz</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">cbf</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">cor</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">edf</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">cor.bz2</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">edf</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">cor.gz</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">edf</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">dm3</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">dm3</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">dm3.bz2</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">dm3</code><code class="variable-quote">'</code><code class="variable-group">]</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="dictAscii"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">dictAscii</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>None<code class="variable-op">: </code><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string"> </code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">!</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">"</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">#</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">$</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">%</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">&</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">\'</code><code class="variable-quote">'</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="lines"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">lines</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-quote">'''</code><code class="variable-string">bzip2, a block-sorting file compressor. Version 1.0.5, 10-Dec-2007</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">.</code>
-<code class="variable-string"></code>
-<code class="variable-string"> usage: bzip2 [flags and input files in any order]</code>
-<code class="variable-string"></code>
-<code class="variable-string"> -h --help print this message</code>
-<code class="variable-string"> -d --decompress force decompression</code>
-<code class="variable-string"> -z --compress force compression</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
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diff --git a/doc/html/fabio.fabioutils-pysrc.html b/doc/html/fabio.fabioutils-pysrc.html
deleted file mode 100644
index c80119e..0000000
--- a/doc/html/fabio.fabioutils-pysrc.html
+++ /dev/null
@@ -1,487 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module fabioutils
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fabioutils-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
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-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.fabioutils-module.html">Module fabio.fabioutils</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">General purpose utilities functions for fabio</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">re</tt><tt class="py-op">,</tt> <tt class="py-name">os</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bruk [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"fabioutils"</tt><tt class="py-op">)</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable fabio.fabioutils.FILETYPES=fabio.fabioutils-module.html#FILETYPES"><a title="fabio.fabioutils.FILETYPES" class="py-name" href="#" onclick="return doclink('link-1', 'FILETYPES', 'link-1');">FILETYPES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"> <tt class="py-comment"># extension NNNimage fabioclass</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"> <tt class="py-comment"># type consistency - always use a list if one case is</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> <tt class="py-string">'edf'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'edf'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"> <tt class="py-string">'cor'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'edf'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> <tt class="py-string">'pnm'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'pnm'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> <tt class="py-string">'pgm'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'pnm'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-string">'pbm'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'pnm'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> <tt class="py-string">'tif'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'tif'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt class="py-string">'tiff'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'tif'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-string">'img'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'adsc'</tt><tt class="py-op">,</tt> <tt class="py-string">'OXD'</tt><tt class="py-op">,</tt> <tt class="py-string">'HiPiC'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt class="py-string">'mccd'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'marccd'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-string">'mar2300'</tt><tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'mar345'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-string">'sfrm'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'bruker100'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-string">'msk'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'fit2dmask'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-string">'spr'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'fit2dspreadsheet'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-string">'dm3'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'dm3'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-string">'kcd'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'kcd'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-string">'cbf'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">'cbf'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-string">'xml'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">"xsd"</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-string">'xsd'</tt> <tt class="py-op">:</tt> <tt class="py-op">[</tt><tt class="py-string">"xsd"</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt class="py-comment"># Add bzipped and gzipped</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-keyword">for</tt> <tt id="link-2" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-2', 'key', 'link-2');">key</a></tt> <tt class="py-keyword">in</tt> <tt id="link-3" class="py-name"><a title="fabio.fabioutils.FILETYPES" class="py-name" href="#" onclick="return doclink('link-3', 'F [...]
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt id="link-4" class="py-name"><a title="fabio.fabioutils.FILETYPES" class="py-name" href="#" onclick="return doclink('link-4', 'FILETYPES', 'link-1');">FILETYPES</a></tt><tt class="py-op">[</tt><tt id="link-5" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-5', 'key', 'link-2');">key</a></tt> <tt class="py-op">+</tt> <tt class="py-string">".bz2"</tt><tt class [...]
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt id="link-8" class="py-name"><a title="fabio.fabioutils.FILETYPES" class="py-name" href="#" onclick="return doclink('link-8', 'FILETYPES', 'link-1');">FILETYPES</a></tt><tt class="py-op">[</tt><tt id="link-9" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-9', 'key', 'link-2');">key</a></tt> <tt class="py-op">+</tt> <tt class="py-string">".gz"</tt><tt class= [...]
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"><tt class="py-comment"># Compressors</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"><tt id="link-12" class="py-name" targets="Variable fabio.fabioutils.COMPRESSORS=fabio.fabioutils-module.html#COMPRESSORS"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" onclick="return doclink('link-12', 'COMPRESSORS', 'link-12');">COMPRESSORS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt id="link-13" class="py-name" targets="Variable fabio.fabioutils.dictAscii=fabio.fabioutils-module.html#dictAscii"><a title="fabio.fabioutils.dictAscii" class="py-name" href="#" onclick="return doclink('link-13', 'dictAscii', 'link-13');">dictAscii</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-name">None</tt><tt class="py-op">:</tt><tt class="py-op">[</tt><tt class="py-name">chr</tt><tt cla [...]
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt id="link-16" class="py-name" targets="Variable fabio.fabioutils.lines=fabio.fabioutils-module.html#lines"><a title="fabio.fabioutils.lines" class="py-name" href="#" onclick="return doclink('link-16', 'lines', 'link-16');">lines</a></tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">popen</tt><tt class="py-op">(</tt><tt class="py-string">"gzip -h 2>&1"</tt [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-17', 'read', 'link-17');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-comment"># Looking for "usage"</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"sage"</tt> <tt class="py-keyword">in</tt> <tt id="link-18" class="py-name"><a title="fabio.fabioutils.lines" class="py-name" href="#" onclick="return doclink('link-18', 'lines', 'link-16');">lines</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt id="link-19" class="py-name"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" onclick="return doclink('link-19', 'COMPRESSORS', 'link-12');">COMPRESSORS</a></tt><tt class="py-op">[</tt><tt class="py-string">'.gz'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">'gzip -dc '</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt id="link-20" class="py-name"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" onclick="return doclink('link-20', 'COMPRESSORS', 'link-12');">COMPRESSORS</a></tt><tt class="py-op">[</tt><tt class="py-string">'.gz'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt id="link-21" class="py-name"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" onclick="return doclink('link-21', 'COMPRESSORS', 'link-12');">COMPRESSORS</a></tt><tt class="py-op">[</tt><tt class="py-string">'.gz'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt id="link-22" class="py-name"><a title="fabio.fabioutils.lines" class="py-name" href="#" onclick="return doclink('link-22', 'lines', 'link-16');">lines</a></tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">popen</tt><tt class="py-op">(</tt><tt class="py-string">"bzip2 -h 2>&1"</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-23" class="py- [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-23', 'read', 'link-17');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-comment"># Looking for "usage" </tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">"sage"</tt> <tt class="py-keyword">in</tt> <tt id="link-24" class="py-name"><a title="fabio.fabioutils.lines" class="py-name" href="#" onclick="return doclink('link-24', 'lines', 'link-16');">lines</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt id="link-25" class="py-name"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" onclick="return doclink('link-25', 'COMPRESSORS', 'link-12');">COMPRESSORS</a></tt><tt class="py-op">[</tt><tt class="py-string">'.bz2'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">'bzip2 -dc '</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt id="link-26" class="py-name"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" onclick="return doclink('link-26', 'COMPRESSORS', 'link-12');">COMPRESSORS</a></tt><tt class="py-op">[</tt><tt class="py-string">'.bz2'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"><tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt id="link-27" class="py-name"><a title="fabio.fabioutils.COMPRESSORS" class="py-name" href="#" onclick="return doclink('link-27', 'COMPRESSORS', 'link-12');">COMPRESSORS</a></tt><tt class="py-op">[</tt><tt class="py-string">'.bz2'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> </tt>
-<a name="getnum"></a><div id="getnum-def"><a name="L70"></a><tt class="py-lineno"> 70</tt> <a class="py-toggle" href="#" id="getnum-toggle" onclick="return toggle('getnum');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#getnum">getnum</a><tt class="py-op">(</tt><tt class="py-param">name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="getnum-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="getnum-expanded"><a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"><tt class="py-docstring"> # try to figure out a file number</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"><tt class="py-docstring"> # guess it starts at the back</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-name">stem</tt> <tt class="py-op">,</tt> <tt class="py-name">num</tt><tt class="py-op">,</tt> <tt class="py-name">post_num</tt> <tt class="py-op">=</tt> <tt id="link-28" class="py-name" targets="Function fabio.fabioutils.numstem()=fabio.fabioutils-module.html#numstem"><a title="fabio.fabioutils.numstem" class="py-name" href="#" onclick="return doclink('link-28', 'numstem', 'link-28');">numstem</a></tt [...]
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">)</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> </tt>
-<a name="filename_object"></a><div id="filename_object-def"><a name="L81"></a><tt class="py-lineno"> 81</tt> <a class="py-toggle" href="#" id="filename_object-toggle" onclick="return toggle('filename_object');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.fabioutils.filename_object-class.html">filename_object</a><tt class="py-op">:</tt> </tt>
-</div><div id="filename_object-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="filename_object-expanded"><a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"><tt class="py-docstring"> The 'meaning' of a filename</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="filename_object.__init__"></a><div id="filename_object.__init__-def"><a name="L85"></a><tt class="py-lineno"> 85</tt> <a class="py-toggle" href="#" id="filename_object.__init__-toggle" onclick="return toggle('filename_object.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils.filename_object-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class= [...]
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-param">num</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-param">directory</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-param">format</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-param">extension</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-param">postnum</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="py-op">,</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-param">digits</tt><tt class="py-op">=</tt><tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="filename_object.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_object.__init__-expanded"><a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stem</tt> <tt class="py-op">=</tt> <tt class="py-name">stem</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">num</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">format</tt> <tt class="py-op">=</tt> <tt class="py-name">format</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extension</tt> <tt class="py-op">=</tt> <tt class="py-name">extension</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">digits</tt> <tt class="py-op">=</tt> <tt class="py-name">digits</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">postnum</tt> <tt class="py-op">=</tt> <tt class="py-name">postnum</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">directory</tt> <tt class="py-op">=</tt> <tt class="py-name">directory</tt> </tt>
-</div><a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> </tt>
-<a name="filename_object.str"></a><div id="filename_object.str-def"><a name="L100"></a><tt class="py-lineno">100</tt> <a class="py-toggle" href="#" id="filename_object.str-toggle" onclick="return toggle('filename_object.str');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils.filename_object-class.html#str">str</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="filename_object.str-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_object.str-expanded"><a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-docstring">""" Return a string representation """</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-string">"stem %s, num %s format %s extension %s "</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-string">"postnum = %s digits %s dir %s"</tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">fmt</tt> <tt class="py-op">%</tt> <tt class="py-name">tuple</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt id="link-29" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-29', 'str', 'link-29');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">x</tt><tt class="py-op">)</tt> <tt class="py-keyword">for</tt> <tt class="py-name">x</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stem</tt> <tt class="py-op">,</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">,</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">format</tt> <tt class="py-op">,</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extension</tt> <tt class="py-op">,</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">postnum</tt> <tt class="py-op">,</tt> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">digits</tt> <tt class="py-op">,</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">directory</tt> <tt class="py-op">]</tt> <tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> </tt>
-<a name="filename_object.tostring"></a><div id="filename_object.tostring-def"><a name="L114"></a><tt class="py-lineno">114</tt> <a class="py-toggle" href="#" id="filename_object.tostring-toggle" onclick="return toggle('filename_object.tostring');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils.filename_object-class.html#tostring">tostring</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class= [...]
-</div><div id="filename_object.tostring-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_object.tostring-expanded"><a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"><tt class="py-docstring"> convert yourself to a string</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-name">name</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stem</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">digits</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt> <tt class="py-keyword">and</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</t [...]
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-string">"%0"</tt> <tt class="py-op">+</tt> <tt id="link-30" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-30', 'str', 'link-29');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">digits</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"d"</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">name</tt> <tt class="py-op">+=</tt> <tt class="py-name">fmt</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">postnum</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">name</tt> <tt class="py-op">+=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">postnum</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extension</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">name</tt> <tt class="py-op">+=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">extension</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">directory</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-name">name</tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">directory</tt><tt class="py-op">,</tt> <tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">name</tt> </tt>
-</div></div><a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> </tt>
-<a name="numstem"></a><div id="numstem-def"><a name="L131"></a><tt class="py-lineno">131</tt> <a class="py-toggle" href="#" id="numstem-toggle" onclick="return toggle('numstem');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#numstem">numstem</a><tt class="py-op">(</tt><tt class="py-param">name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="numstem-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="numstem-expanded"><a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-docstring">""" cant see how to do without reversing strings</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"><tt class="py-docstring"> Match 1 or more digits going backwards from the end of the string</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt class="py-name">reg</tt> <tt class="py-op">=</tt> <tt class="py-name">re</tt><tt class="py-op">.</tt><tt class="py-name">compile</tt><tt class="py-op">(</tt><tt class="py-string">r"^(.*?)(-?[0-9]{0,9})(\D*)$"</tt><tt class="py-op">)</tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-comment">#reg = re.compile("""(\D*)(\d\d*)(\w*)""")</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-name">res</tt> <tt class="py-op">=</tt> <tt class="py-name">reg</tt><tt class="py-op">.</tt><tt class="py-name">match</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">groups</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-comment">#res = reg.match(name[::-1]).groups()</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-comment">#return [ r[::-1] for r in res[::-1]]</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-31" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-31', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">res</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class= [...]
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-op">[</tt><tt class="py-name">res</tt><tt class="py-op">[</tt><tt class="py-number">2</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-string">''</tt><tt class="py-op">,</tt> <tt class="py-string">''</tt><tt class="py-op">]</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-op">[</tt> <tt class="py-name">r</tt> <tt class="py-keyword">for</tt> <tt class="py-name">r</tt> <tt class="py-keyword">in</tt> <tt class="py-name">res</tt><tt class="py-op">]</tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> <tt class="py-comment"># no digits found</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">,</tt> <tt class="py-string">""</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> </tt>
-<a name="deconstruct_filename"></a><div id="deconstruct_filename-def"><a name="L147"></a><tt class="py-lineno">147</tt> <a class="py-toggle" href="#" id="deconstruct_filename-toggle" onclick="return toggle('deconstruct_filename');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#deconstruct_filename">deconstruct_filename</a><tt class="py-op">(</tt><tt class="py-param">filename</tt><tt class="py-op">)</tt><tt class="py-op" [...]
-</div><div id="deconstruct_filename-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="deconstruct_filename-expanded"><a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"><tt class="py-docstring"> Break up a filename to get image type and number</tt> </tt>
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-name">direc</tt> <tt class="py-op">,</tt> <tt class="py-name">name</tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-33" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-33', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">direc</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">direc</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-name">parts</tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">path</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">split< [...]
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-comment"># loop back from end</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-name">compressed</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-name">extn</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-name">postnum</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-name">ndigit</tt> <tt class="py-op">=</tt> <tt class="py-number">4</tt> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">"gz"</tt><tt class="py-op">,</tt> <tt class="py-string">"bz2"</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-name">extn</tt> <tt class="py-op">=</tt> <tt class="py-string">"."</tt> <tt class="py-op">+</tt> <tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-name">parts</tt> <tt class="py-op">=</tt> <tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-name">compressed</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt id="link-34" class="py-name"><a title="fabio.fabioutils.FILETYPES" class="py-name" href="#" onclick="return doclink('link-34', 'FILETYPES', 'link-1');">FILETYPES</a></tt><tt class="py-op">.</tt><tt class="py-name">keys</ [...]
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-name">typ</tt> <tt class="py-op">=</tt> <tt id="link-35" class="py-name"><a title="fabio.fabioutils.FILETYPES" class="py-name" href="#" onclick="return doclink('link-35', 'FILETYPES', 'link-1');">FILETYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> </tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-name">extn</tt> <tt class="py-op">=</tt> <tt class="py-string">"."</tt> <tt class="py-op">+</tt> <tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-name">extn</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-name">stem</tt> <tt class="py-op">,</tt> <tt class="py-name">numstring</tt><tt class="py-op">,</tt> <tt class="py-name">postnum</tt> <tt class="py-op">=</tt> <tt id="link-36" class="py-name"><a title="fabio.fabioutils.numstem" class="py-name" href="#" onclick="return doclink('link-36', 'numstem', 'link-28');">numstem</a></tt><tt class="py-op">(</tt><tt class="py-string">"."</tt><tt class="py- [...]
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">numstring</tt><tt class="py-op">)</tt> </tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-name">ndigit</tt> <tt class="py-op">=</tt> <tt id="link-37" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-37', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">numstring</tt><tt class="py-op">)</tt> </tt>
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-comment"># There is no number - hence make num be None, not 0</tt> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-name">stem</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-comment"># Probably two type left</tt> </tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-38" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-38', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">parts</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-comment"># Probably GE format stem_numb</tt> </tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-name">parts2</tt> <tt class="py-op">=</tt> <tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">"_"</tt><tt class="py-op">)</tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">parts2</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-name">ndigit</tt> <tt class="py-op">=</tt> <tt id="link-39" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-39', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">parts2</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-name">typ</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">'GE'</tt><tt class="py-op">]</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-name">stem</tt> <tt class="py-op">=</tt> <tt class="py-string">"_"</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">parts2</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"_"</tt> </tt>
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-name">ndigit</tt> <tt class="py-op">=</tt> <tt id="link-40" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-40', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-name">typ</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">'bruker'</tt><tt class="py-op">]</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-name">stem</tt> <tt class="py-op">=</tt> <tt class="py-string">"."</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"."</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-name">typ</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-name">extn</tt> <tt class="py-op">=</tt> <tt class="py-string">"."</tt> <tt class="py-op">+</tt> <tt class="py-name">parts</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-name">extn</tt> </tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-name">stem</tt> <tt class="py-op">,</tt> <tt class="py-name">numstring</tt><tt class="py-op">,</tt> <tt class="py-name">postnum</tt> <tt class="py-op">=</tt> <tt id="link-41" class="py-name"><a title="fabio.fabioutils.numstem" class="py-name" href="#" onclick="return doclink('link-41', 'numstem', 'link-28');">numstem</a></tt><tt class="py-op">(</tt><tt class="py-string">"."</tt><tt cl [...]
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">numstring</tt><tt class="py-op">)</tt> </tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-name">ndigit</tt> <tt class="py-op">=</tt> <tt id="link-42" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-42', 'len', 'link-31');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">numstring</tt><tt class="py-op">)</tt> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-comment"># raise Exception("Cannot decode "+filename)</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-43" class="py-name" targets="Class fabio.fabioutils.filename_object=fabio.fabioutils.filename_object-class.html"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-43', 'filename_object', 'link-43');">filename_object</a></tt><tt class="py-op">(</tt><tt class="py-name">stem</tt><tt class="py-op">,</tt> </tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-name">num</tt><tt class="py-op">=</tt><tt class="py-name">num</tt><tt class="py-op">,</tt> </tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-name">directory</tt><tt class="py-op">=</tt><tt class="py-name">direc</tt><tt class="py-op">,</tt> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-name">format</tt><tt class="py-op">=</tt><tt class="py-name">typ</tt><tt class="py-op">,</tt> </tt>
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-name">extension</tt><tt class="py-op">=</tt><tt class="py-name">extn</tt><tt class="py-op">,</tt> </tt>
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-name">postnum</tt><tt class="py-op">=</tt><tt class="py-name">postnum</tt><tt class="py-op">,</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-name">digits</tt><tt class="py-op">=</tt><tt class="py-name">ndigit</tt><tt class="py-op">)</tt> </tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt> </tt>
-</div><a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> </tt>
-<a name="construct_filename"></a><div id="construct_filename-def"><a name="L212"></a><tt class="py-lineno">212</tt> <a class="py-toggle" href="#" id="construct_filename-toggle" onclick="return toggle('construct_filename');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#construct_filename">construct_filename</a><tt class="py-op">(</tt><tt class="py-param">filename</tt><tt class="py-op">,</tt> <tt class="py-param">frame</ [...]
-</div><div id="construct_filename-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="construct_filename-expanded"><a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-docstring">"Try to construct the filename for a given frame"</tt> </tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-name">fo</tt> <tt class="py-op">=</tt> <tt id="link-44" class="py-name" targets="Function fabio.fabioutils.deconstruct_filename()=fabio.fabioutils-module.html#deconstruct_filename"><a title="fabio.fabioutils.deconstruct_filename" class="py-name" href="#" onclick="return doclink('link-44', 'deconstruct_filename', 'link-44');">deconstruct_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">fil [...]
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-name">fo</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">frame</tt> </tt>
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">fo</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,Method fabio.fabioutils.filename_object.tostring()=fabio.fabioutils.filename_object-class.html#tostring"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-45', 'tostring', 'link-45');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> </tt>
-<a name="next_filename"></a><div id="next_filename-def"><a name="L218"></a><tt class="py-lineno">218</tt> <a class="py-toggle" href="#" id="next_filename-toggle" onclick="return toggle('next_filename');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#next_filename">next_filename</a><tt class="py-op">(</tt><tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">padding</tt><tt class="py-op">=</tt><tt c [...]
-</div><div id="next_filename-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="next_filename-expanded"><a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-docstring">""" increment number """</tt> </tt>
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-46" class="py-name"><a title="fabio.fabioutils.deconstruct_filename" class="py-name" href="#" onclick="return doclink('link-46', 'deconstruct_filename', 'link-44');">deconstruct_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">padding</tt><tt class="py-op">:</tt> </tt>
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">digits</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-47', 'tostring', 'link-45');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> </tt>
-<a name="previous_filename"></a><div id="previous_filename-def"><a name="L226"></a><tt class="py-lineno">226</tt> <a class="py-toggle" href="#" id="previous_filename-toggle" onclick="return toggle('previous_filename');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#previous_filename">previous_filename</a><tt class="py-op">(</tt><tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">padding</tt><tt c [...]
-</div><div id="previous_filename-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="previous_filename-expanded"><a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-docstring">""" decrement number """</tt> </tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-48" class="py-name"><a title="fabio.fabioutils.deconstruct_filename" class="py-name" href="#" onclick="return doclink('link-48', 'deconstruct_filename', 'link-44');">deconstruct_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">-=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">padding</tt><tt class="py-op">:</tt> </tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">digits</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-49" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-49', 'tostring', 'link-45');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> </tt>
-<a name="jump_filename"></a><div id="jump_filename-def"><a name="L234"></a><tt class="py-lineno">234</tt> <a class="py-toggle" href="#" id="jump_filename-toggle" onclick="return toggle('jump_filename');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#jump_filename">jump_filename</a><tt class="py-op">(</tt><tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">num</tt><tt class="py-op">,</tt> <tt clas [...]
-</div><div id="jump_filename-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="jump_filename-expanded"><a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-docstring">""" jump to number """</tt> </tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-50" class="py-name"><a title="fabio.fabioutils.deconstruct_filename" class="py-name" href="#" onclick="return doclink('link-50', 'deconstruct_filename', 'link-44');">deconstruct_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">num</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">padding</tt><tt class="py-op">:</tt> </tt>
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">digits</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-51', 'tostring', 'link-45');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> </tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> </tt>
-<a name="extract_filenumber"></a><div id="extract_filenumber-def"><a name="L243"></a><tt class="py-lineno">243</tt> <a class="py-toggle" href="#" id="extract_filenumber-toggle" onclick="return toggle('extract_filenumber');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#extract_filenumber">extract_filenumber</a><tt class="py-op">(</tt><tt class="py-param">name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="extract_filenumber-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="extract_filenumber-expanded"><a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-docstring">""" extract file number """</tt> </tt>
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-52" class="py-name"><a title="fabio.fabioutils.deconstruct_filename" class="py-name" href="#" onclick="return doclink('link-52', 'deconstruct_filename', 'link-44');">deconstruct_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> </tt>
-</div><a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> </tt>
-<a name="isAscii"></a><div id="isAscii-def"><a name="L248"></a><tt class="py-lineno">248</tt> <a class="py-toggle" href="#" id="isAscii-toggle" onclick="return toggle('isAscii');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#isAscii">isAscii</a><tt class="py-op">(</tt><tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">listExcluded</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt cla [...]
-</div><div id="isAscii-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="isAscii-expanded"><a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"><tt class="py-docstring"> @param name: string to check</tt> </tt>
-<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"><tt class="py-docstring"> @param listExcluded: list of char or string excluded.</tt> </tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"><tt class="py-docstring"> @return: True of False whether name is pure ascii or not</tt> </tt>
-<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-name">isascii</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt class="py-name">name</tt><tt class="py-op">.</tt><tt class="py-name">decode</tt><tt class="py-op">(</tt><tt class="py-string">"ascii"</tt><tt class="py-op">)</tt> </tt>
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">UnicodeDecodeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-name">isascii</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">listExcluded</tt><tt class="py-op">:</tt> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-name">isascii</tt> <tt class="py-op">=</tt> <tt class="py-keyword">not</tt><tt class="py-op">(</tt><tt class="py-name">any</tt><tt class="py-op">(</tt><tt class="py-name">bad</tt> <tt class="py-keyword">in</tt> <tt class="py-name">name</tt> <tt class="py-keyword">for</tt> <tt class="py-name">bad</tt> <tt class="py-keyword">in</tt> <tt class="py-name">listExcluded</tt><tt class="py-op">)</tt> [...]
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-name">isascii</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">isascii</tt> </tt>
-</div><a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> </tt>
-<a name="toAscii"></a><div id="toAscii-def"><a name="L266"></a><tt class="py-lineno">266</tt> <a class="py-toggle" href="#" id="toAscii-toggle" onclick="return toggle('toAscii');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fabioutils-module.html#toAscii">toAscii</a><tt class="py-op">(</tt><tt class="py-param">name</tt><tt class="py-op">,</tt> <tt class="py-param">excluded</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class=" [...]
-</div><div id="toAscii-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="toAscii-expanded"><a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"><tt class="py-docstring"> @param name: string to check</tt> </tt>
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"><tt class="py-docstring"> @param excluded: tuple of char or string excluded (not list: they are mutable).</tt> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"><tt class="py-docstring"> @return: the name with all non valid char removed</tt> </tt>
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">excluded</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt id="link-53" class="py-name"><a title="fabio.fabioutils.dictAscii" class="py-name" href="#" onclick="return doclink('link-53', 'dictAscii', 'link-13');">dictAscii</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-name">ascii</tt> <tt class="py-op">=</tt> <tt id="link-54" class="py-name"><a title="fabio.fabioutils.dictAscii" class="py-name" href="#" onclick="return doclink('link-54', 'dictAscii', 'link-13');">dictAscii</a></tt><tt class="py-op">[</tt><tt class="py-name">None</tt><tt class="py-op">]</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-55" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-55', 'i', 'link-14');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">excluded</tt><tt class="py-op">:</tt> </tt>
-<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-56" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-56', 'i', 'link-14');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">ascii</tt><tt class="py-op">:</tt> </tt>
-<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-name">ascii</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt id="link-57" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-57', 'i', 'link-14');">i</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt id="link-58" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-58', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"toAscii: % not in ascii table"</tt> <tt class="py-op">%</tt> <tt id="link-59" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-59', 'i', 'link-14');">i</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt id="link-60" class="py-name"><a title="fabio.fabioutils.dictAscii" class="py-name" href="#" onclick="return doclink('link-60', 'dictAscii', 'link-13');">dictAscii</a></tt><tt class="py-op">[</tt><tt class="py-name">excluded</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">ascii</tt> </tt>
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-name">ascii</tt> <tt class="py-op">=</tt> <tt id="link-61" class="py-name"><a title="fabio.fabioutils.dictAscii" class="py-name" href="#" onclick="return doclink('link-61', 'dictAscii', 'link-13');">dictAscii</a></tt><tt class="py-op">[</tt><tt class="py-name">excluded</tt><tt class="py-op">]</tt> </tt>
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-name">out</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-62" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-62', 'i', 'link-14');">i</a></tt> <tt class="py-keyword">for</tt> <tt id="link-63" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-63', 'i', 'link-14');">i</a></tt> <tt [...]
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-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-string">""</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">out</tt><tt class="py-op">)</tt> </tt>
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diff --git a/doc/html/fabio.fabioutils.filename_object-class.html b/doc/html/fabio.fabioutils.filename_object-class.html
deleted file mode 100644
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--- a/doc/html/fabio.fabioutils.filename_object-class.html
+++ /dev/null
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- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.fabioutils-module.html">Module fabioutils</a> ::
- Class filename_object
- </span>
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-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class filename_object</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fabioutils-pysrc.html#filename_object">source code</a></span></p>
-<p>The 'meaning' of a filename</p>
-
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- <span class="summary-sig-arg">num</span>=<span class="summary-sig-default">None</span>,
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- <span class="summary-sig-arg">postnum</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">digits</span>=<span class="summary-sig-default">4</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#filename_object.__init__">source code</a></span>
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- <td><span class="summary-sig"><a name="str"></a><span class="summary-sig-name">str</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Return a string representation</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#filename_object.str">source code</a></span>
-
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-
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- <tr>
- <td><span class="summary-sig"><a name="tostring"></a><span class="summary-sig-name">tostring</span>(<span class="summary-sig-arg">self</span>)</span><br />
- convert yourself to a string</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fabioutils-pysrc.html#filename_object.tostring">source code</a></span>
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diff --git a/doc/html/fabio.file_series-module.html b/doc/html/fabio.file_series-module.html
deleted file mode 100644
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+++ /dev/null
@@ -1,320 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
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- <a href="fabio-module.html">Package fabio</a> ::
- Module file_series
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
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- target="_top">no frames</a>]</span></td></tr>
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- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module file_series</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.file_series-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
-
- + Jon Wright, ESRF
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
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- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
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- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.file_series.file_series-class.html" class="summary-name">file_series</a><br />
- represents a series of files to iterate
-has an idea of a current position to do next and prev
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.file_series.numbered_file_series-class.html" class="summary-name">numbered_file_series</a><br />
- mydata0001.edf = "mydata" + 0001 + ".edf"
- mydata0002.edf = "mydata" + 0002 + ".edf"
- mydata0003.edf = "mydata" + 0003 + ".edf"
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.file_series.filename_series-class.html" class="summary-name">filename_series</a><br />
- Much like the others, but created from a string filename
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
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- <td align="left"><span class="table-header">Functions</span></td>
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- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="new_file_series0"></a><span class="summary-sig-name">new_file_series0</span>(<span class="summary-sig-arg">first_object</span>,
- <span class="summary-sig-arg">first</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">last</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">step</span>=<span class="summary-sig-default">1</span>)</span><br />
- Created from a fabio image first and last are file numbers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#new_file_series0">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.file_series-module.html#new_file_series" class="summary-sig-name">new_file_series</a>(<span class="summary-sig-arg">first_object</span>,
- <span class="summary-sig-arg">nimages</span>=<span class="summary-sig-default">0</span>,
- <span class="summary-sig-arg">step</span>=<span class="summary-sig-default">1</span>,
- <span class="summary-sig-arg">traceback</span>=<span class="summary-sig-default">False</span>)</span><br />
- A generator function that creates a file series starting from a a fabioimage.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#new_file_series">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
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- cellspacing="0" width="100%" bgcolor="white">
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- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- </td>
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-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("fileseries")">logging.getLogger("fileseries")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
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-<!-- ==================== FUNCTION DETAILS ==================== -->
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-<a name="new_file_series"></a>
-<div>
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- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">new_file_series</span>(<span class="sig-arg">first_object</span>,
- <span class="sig-arg">nimages</span>=<span class="sig-default">0</span>,
- <span class="sig-arg">step</span>=<span class="sig-default">1</span>,
- <span class="sig-arg">traceback</span>=<span class="sig-default">False</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.file_series-pysrc.html#new_file_series">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-A generator function that creates a file series starting from a a fabioimage.
-Iterates through all images in a file (if more than 1), then proceeds to
-the next file as determined by fabio.next_filename.
-
-first_object: the starting fabioimage, which will be the first one yielded
- in the sequence
-nimages: the maximum number of images to consider
-step: step size, will yield the first and every step'th image until nimages
- is reached. (e.g. nimages = 5, step = 2 will yield 3 images (0, 2, 4)
-traceback: if True causes it to print a traceback in the event of an
- exception (missing image, etc.). Otherwise the calling routine can handle
- the exception as it chooses
-yields: the next fabioimage in the series.
- In the event there is an exception, it yields the sys.exec_info for the
- exception instead. sys.exec_info is a tuple:
- ( exceptionType, exceptionValue, exceptionTraceback )
- from which all the exception information can be obtained.
- Suggested usage:
- for obj in new_file_series( ... ):
- if not isinstance( obj, fabio.fabioimage.fabioimage ):
- # deal with errors like missing images, non readable files, etc
- # e.g.
- traceback.print_exception(obj[0], obj[1], obj[2])
-
-</pre>
- <dl class="fields">
- </dl>
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- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module file_series
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.file_series-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.file_series-module.html">Module fabio.file_series</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring"> + Jon Wright, ESRF</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">sys</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"fileseries"</tt><tt class="py-op">)</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">traceback</tt> <tt class="py-keyword">as</tt> <tt class="py-name">pytraceback</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioutils=fabio.fabioutils-module.html"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-1', 'fabioutils', 'link-1');">fabioutils</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Class fabio.fabioutils.filename_object=fabio.fabioutils.filename_object-class.html">< [...]
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-4" class="py-name" targets="Module fabio.openimage=fabio.openimage-module.html,Function fabio.openimage.openimage()=fabio.openimage-module.html#openimage"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-4', 'openimage', 'link-4');">openimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-5', 'openimage', 'link-4');">openimage</a></tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> </tt>
-<a name="new_file_series0"></a><div id="new_file_series0-def"><a name="L23"></a><tt class="py-lineno"> 23</tt> <a class="py-toggle" href="#" id="new_file_series0-toggle" onclick="return toggle('new_file_series0');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series-module.html#new_file_series0">new_file_series0</a><tt class="py-op">(</tt><tt class="py-param">first_object</tt><tt class="py-op">,</tt> <tt class="py-param">first</tt><tt c [...]
-</div><div id="new_file_series0-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="new_file_series0-expanded"><a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-docstring"> Created from a fabio image</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-docstring"> first and last are file numbers</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-name">im</tt> <tt class="py-op">=</tt> <tt id="link-6" class="py-name" targets="Method fabio.file_series.file_series.first_object()=fabio.file_series.file_series-class.html#first_object"><a title="fabio.file_series.file_series.first_object" class="py-name" href="#" onclick="return doclink('link-6', 'first_object', 'link-6');">first_object</a></tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-name">nimages</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-comment"># for counting images</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">None</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt id="link-7" class="py-name" targets="Method fabio.file_series.file_series.first()=fabio.file_series.file_series-class.html#first"><a title="fabio.file_series.file_series.first" class="py-name" href="#" onclick="return doclink('link-7', 'first', 'link-7');">first</a></tt><tt class="py-op">,</tt> <t [...]
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-name">step</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-name">total</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-name">total</tt> <tt class="py-op">=</tt> <tt id="link-9" class="py-name"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-9', 'last', 'link-8');">last</a></tt> <tt class="py-op">-</tt> <tt id="link-10" class="py-name"><a title="fabio.file_series.file_series.first" class="py-name" href="#" onclick="return doclink('link-10', 'first', 'link-7');">f [...]
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-keyword">yield</tt> <tt class="py-name">im</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">nimages</tt> <tt class="py-op"><</tt> <tt class="py-name">total</tt><tt class="py-op">:</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-name">nimages</tt> <tt class="py-op">+=</tt> <tt class="py-name">step</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">newim</tt> <tt class="py-op">=</tt> <tt class="py-name">im</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Method fabio.GEimage.GEimage.next()=fabio.GEimage.GEimage-class.html#next,Method fabio.edfimage.edfimage.next()=fabio.edfimage.edfimage-class.html#next,Method fabio.fabioimage.fabioimage.next()=fabio.fabioimage.fabioimage-class.html#next,Method fabio.file_serie [...]
-fabio.edfimage.edfimage.next
-fabio.fabioimage.fabioimage.next
-fabio.file_series.file_series.next
-fabio.file_series.filename_series.next" class="py-name" href="#" onclick="return doclink('link-11', 'next', 'link-11');">next</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">im</tt> <tt class="py-op">=</tt> <tt class="py-name">newim</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-name">pytraceback</tt><tt class="py-op">.</tt><tt class="py-name">print_exc</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-comment"># Skip bad images</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt id="link-12" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-12', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Got a problem here: %s"</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">)</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-name">im</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt id="link-13" class="py-name"><a title="fabio.fabioutils.next_filename" class="py-name" href="#" onclick="return doclink('link-13', 'next_filename', 'link-3');">next_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">im</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt><t [...]
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-comment"># KE: This will not work and will throw an exception</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-comment"># fabio.next_filename doesn't understand %nnnn on the end</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt id="link-14" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-14', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Got another problem here: %s"</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">)</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-name">im</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt id="link-15" class="py-name"><a title="fabio.fabioutils.next_filename" class="py-name" href="#" onclick="return doclink('link-15', 'next_filename', 'link-3');">next_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">im</tt><tt class="py-op">.</tt><tt class="py-name">sequencefilenam [...]
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-keyword">yield</tt> <tt class="py-name">None</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-keyword">yield</tt> <tt class="py-name">im</tt> </tt>
-</div><a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> </tt>
-<a name="new_file_series"></a><div id="new_file_series-def"><a name="L60"></a><tt class="py-lineno"> 60</tt> <a class="py-toggle" href="#" id="new_file_series-toggle" onclick="return toggle('new_file_series');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series-module.html#new_file_series">new_file_series</a><tt class="py-op">(</tt><tt class="py-param">first_object</tt><tt class="py-op">,</tt> <tt class="py-param">nimages</tt><tt class [...]
-</div><div id="new_file_series-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="new_file_series-expanded"><a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"><tt class="py-docstring"> A generator function that creates a file series starting from a a fabioimage.</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"><tt class="py-docstring"> Iterates through all images in a file (if more than 1), then proceeds to</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"><tt class="py-docstring"> the next file as determined by fabio.next_filename.</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"><tt class="py-docstring"> first_object: the starting fabioimage, which will be the first one yielded</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"><tt class="py-docstring"> in the sequence</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"><tt class="py-docstring"> nimages: the maximum number of images to consider</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"><tt class="py-docstring"> step: step size, will yield the first and every step'th image until nimages</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"><tt class="py-docstring"> is reached. (e.g. nimages = 5, step = 2 will yield 3 images (0, 2, 4) </tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"><tt class="py-docstring"> traceback: if True causes it to print a traceback in the event of an</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"><tt class="py-docstring"> exception (missing image, etc.). Otherwise the calling routine can handle</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"><tt class="py-docstring"> the exception as it chooses </tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"><tt class="py-docstring"> yields: the next fabioimage in the series.</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"><tt class="py-docstring"> In the event there is an exception, it yields the sys.exec_info for the</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt class="py-docstring"> exception instead. sys.exec_info is a tuple:</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt class="py-docstring"> ( exceptionType, exceptionValue, exceptionTraceback )</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"><tt class="py-docstring"> from which all the exception information can be obtained.</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt class="py-docstring"> Suggested usage:</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"><tt class="py-docstring"> for obj in new_file_series( ... ):</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"><tt class="py-docstring"> if not isinstance( obj, fabio.fabioimage.fabioimage ):</tt> </tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"><tt class="py-docstring"> # deal with errors like missing images, non readable files, etc</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"><tt class="py-docstring"> # e.g.</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt class="py-docstring"> traceback.print_exception(obj[0], obj[1], obj[2])</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-name">im</tt> <tt class="py-op">=</tt> <tt id="link-16" class="py-name"><a title="fabio.file_series.file_series.first_object" class="py-name" href="#" onclick="return doclink('link-16', 'first_object', 'link-6');">first_object</a></tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-name">nprocessed</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">abort</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nimages</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-keyword">yield</tt> <tt class="py-name">im</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-name">nprocessed</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">nprocessed</tt> <tt class="py-op"><</tt> <tt class="py-name">nimages</tt><tt class="py-op">:</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-name">newim</tt> <tt class="py-op">=</tt> <tt class="py-name">im</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name"><a title="fabio.GEimage.GEimage.next
-fabio.edfimage.edfimage.next
-fabio.fabioimage.fabioimage.next
-fabio.file_series.file_series.next
-fabio.file_series.filename_series.next" class="py-name" href="#" onclick="return doclink('link-17', 'next', 'link-11');">next</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-name">im</tt> <tt class="py-op">=</tt> <tt class="py-name">newim</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-name">retVal</tt> <tt class="py-op">=</tt> <tt class="py-name">im</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">ex</tt><tt class="py-op">:</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-name">retVal</tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">exc_info</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt><tt class="py-name">traceback</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">pytraceback</tt><tt class="py-op">.</tt><tt class="py-name">print_exc</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-comment"># Skip bad images</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt id="link-18" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-18', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Got a problem here: next() failed %s"</tt><tt class="py-op">,</tt> <tt class="py-name">ex</tt><tt class="py-op">)</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-comment"># Skip bad images</tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">im</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt id="link-19" class="py-name"><a title="fabio.fabioutils.next_filename" class="py-name" href="#" onclick="return doclink('link-19', 'next_filename', 'link-3');">next_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">im</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt>< [...]
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">ex</tt><tt class="py-op">:</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt id="link-20" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-20', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Got another problem here: next_filename(im.filename) %s"</tt><tt class="py-op">,</tt> <tt class="py-name">ex</tt><tt class="py-op">)</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nprocessed</tt> <tt class="py-op">%</tt> <tt class="py-name">step</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-keyword">yield</tt> <tt class="py-name">retVal</tt> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-comment"># Avoid cyclic references with exc_info ?</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-name">retVal</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">abort</tt><tt class="py-op">:</tt> <tt class="py-keyword">break</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-name">nprocessed</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-</div><a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> </tt>
-<a name="file_series"></a><div id="file_series-def"><a name="L117"></a><tt class="py-lineno">117</tt> <a class="py-toggle" href="#" id="file_series-toggle" onclick="return toggle('file_series');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html">file_series</a><tt class="py-op">(</tt><tt class="py-base-class">list</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="file_series-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="file_series-expanded"><a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt class="py-docstring"> represents a series of files to iterate</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"><tt class="py-docstring"> has an idea of a current position to do next and prev</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"><tt class="py-docstring"> You also get from the list python superclass:</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"><tt class="py-docstring"> append</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"><tt class="py-docstring"> count</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"><tt class="py-docstring"> extend</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"><tt class="py-docstring"> insert</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"><tt class="py-docstring"> pop</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"><tt class="py-docstring"> remove</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"><tt class="py-docstring"> reverse</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"><tt class="py-docstring"> sort</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="file_series.__init__"></a><div id="file_series.__init__-def"><a name="L132"></a><tt class="py-lineno">132</tt> <a class="py-toggle" href="#" id="file_series.__init__-toggle" onclick="return toggle('file_series.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">list_of [...]
-</div><div id="file_series.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.__init__-expanded"><a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"><tt class="py-docstring"> arg should be a list of strings which are filenames</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-name">super</tt><tt class="py-op">(</tt><tt id="link-21" class="py-name" targets="Module fabio.file_series=fabio.file_series-module.html,Class fabio.file_series.file_series=fabio.file_series.file_series-class.html"><a title="fabio.file_series
-fabio.file_series.file_series" class="py-name" href="#" onclick="return doclink('link-21', 'file_series', 'link-21');">file_series</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fab [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-22', '__init__', 'link-22');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">list_of_strings</tt><tt class="py-op">)</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-comment"># track current position in list</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-</div><a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-comment"># methods which return a filename</tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> </tt>
-<a name="file_series.first"></a><div id="file_series.first-def"><a name="L143"></a><tt class="py-lineno">143</tt> <a class="py-toggle" href="#" id="file_series.first-toggle" onclick="return toggle('file_series.first');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#first">first</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="file_series.first-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.first-expanded"><a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-docstring">""" first image in series """</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> </tt>
-<a name="file_series.last"></a><div id="file_series.last-def"><a name="L147"></a><tt class="py-lineno">147</tt> <a class="py-toggle" href="#" id="file_series.last-toggle" onclick="return toggle('file_series.last');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#last">last</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="file_series.last-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.last-expanded"><a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-docstring">""" last in series """</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> </tt>
-<a name="file_series.previous"></a><div id="file_series.previous-def"><a name="L151"></a><tt class="py-lineno">151</tt> <a class="py-toggle" href="#" id="file_series.previous-toggle" onclick="return toggle('file_series.previous');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#previous">previous</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="file_series.previous-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.previous-expanded"><a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-docstring">""" prev in a sequence"""</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current</tt> <tt class="py-op">-=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> </tt>
-<a name="file_series.current"></a><div id="file_series.current-def"><a name="L156"></a><tt class="py-lineno">156</tt> <a class="py-toggle" href="#" id="file_series.current-toggle" onclick="return toggle('file_series.current');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#current">current</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="file_series.current-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.current-expanded"><a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-docstring">""" current position in a sequence """</tt> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> </tt>
-<a name="file_series.next"></a><div id="file_series.next-def"><a name="L160"></a><tt class="py-lineno">160</tt> <a class="py-toggle" href="#" id="file_series.next-toggle" onclick="return toggle('file_series.next');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#next">next</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="file_series.next-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.next-expanded"><a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-docstring">""" next in a sequence """</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> </tt>
-<a name="file_series.jump"></a><div id="file_series.jump-def"><a name="L165"></a><tt class="py-lineno">165</tt> <a class="py-toggle" href="#" id="file_series.jump-toggle" onclick="return toggle('file_series.jump');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#jump">jump</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">num</tt><tt class="py-op">)</tt [...]
-</div><div id="file_series.jump-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.jump-expanded"><a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-docstring">""" goto a position in sequence """</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">num</tt> <tt class="py-op"><</tt> <tt id="link-23" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-23', 'len', 'link-23');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt> [...]
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current</tt> <tt class="py-op">=</tt> <tt class="py-name">num</tt> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">_current</tt><tt class="py-op">]</tt> </tt>
-</div><a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> </tt>
-<a name="file_series.len"></a><div id="file_series.len-def"><a name="L171"></a><tt class="py-lineno">171</tt> <a class="py-toggle" href="#" id="file_series.len-toggle" onclick="return toggle('file_series.len');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#len">len</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="file_series.len-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.len-expanded"><a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-docstring">""" number of files"""</tt> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-24" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-24', 'len', 'link-23');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> </tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-comment"># Methods which return a fabioimage</tt> </tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> </tt>
-<a name="file_series.first_image"></a><div id="file_series.first_image-def"><a name="L178"></a><tt class="py-lineno">178</tt> <a class="py-toggle" href="#" id="file_series.first_image-toggle" onclick="return toggle('file_series.first_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#first_image">first_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="file_series.first_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.first_image-expanded"><a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-docstring">""" first image in a sequence """</tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-25" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-25', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="fabio.file_series.file_series.first" class="py-name" href="#" onclick="return doclink('link-26', 'first', 'link-7');">first</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> </tt>
-<a name="file_series.last_image"></a><div id="file_series.last_image-def"><a name="L182"></a><tt class="py-lineno">182</tt> <a class="py-toggle" href="#" id="file_series.last_image-toggle" onclick="return toggle('file_series.last_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#last_image">last_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op" [...]
-</div><div id="file_series.last_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.last_image-expanded"><a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-docstring">""" last image in a sequence """</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-27" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-27', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-28', 'last', 'link-8');">last</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> </tt>
-<a name="file_series.next_image"></a><div id="file_series.next_image-def"><a name="L186"></a><tt class="py-lineno">186</tt> <a class="py-toggle" href="#" id="file_series.next_image-toggle" onclick="return toggle('file_series.next_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#next_image">next_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op" [...]
-</div><div id="file_series.next_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.next_image-expanded"><a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-docstring">""" Return the next image """</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-29" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-29', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.GEimage.GEimage.next
-fabio.edfimage.edfimage.next
-fabio.fabioimage.fabioimage.next
-fabio.file_series.file_series.next
-fabio.file_series.filename_series.next" class="py-name" href="#" onclick="return doclink('link-30', 'next', 'link-11');">next</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> </tt>
-<a name="file_series.previous_image"></a><div id="file_series.previous_image-def"><a name="L190"></a><tt class="py-lineno">190</tt> <a class="py-toggle" href="#" id="file_series.previous_image-toggle" onclick="return toggle('file_series.previous_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#previous_image">previous_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op" [...]
-</div><div id="file_series.previous_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.previous_image-expanded"><a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-docstring">""" Return the previous image """</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-31" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-31', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name" targets="Method fabio.GEimage.GEimage.previous()=fabio.GEimage.GEimage-class.html#previous,Method fabio.edfimage.edfimage.previous()=fabio.edfimage.edfimage-class.html#previous,Method fabio.fabioimage.fabioimage.previous()=fabio.fabioimage.fabioimage-c [...]
-fabio.edfimage.edfimage.previous
-fabio.fabioimage.fabioimage.previous
-fabio.file_series.file_series.previous
-fabio.file_series.filename_series.previous" class="py-name" href="#" onclick="return doclink('link-32', 'previous', 'link-32');">previous</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> </tt>
-<a name="file_series.jump_image"></a><div id="file_series.jump_image-def"><a name="L194"></a><tt class="py-lineno">194</tt> <a class="py-toggle" href="#" id="file_series.jump_image-toggle" onclick="return toggle('file_series.jump_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#jump_image">jump_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-pa [...]
-</div><div id="file_series.jump_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.jump_image-expanded"><a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-docstring">""" jump to and read image """</tt> </tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-33" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-33', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name" targets="Method fabio.file_series.file_series.jump()=fabio.file_series.file_series-class.html#jump,Method fabio.file_series.filename_series.jump()=fabio.file_series.filename_series-class.html#jump"><a title="fabio.file_series.file_series.jump
-fabio.file_series.filename_series.jump" class="py-name" href="#" onclick="return doclink('link-34', 'jump', 'link-34');">jump</a></tt><tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> </tt>
-<a name="file_series.current_image"></a><div id="file_series.current_image-def"><a name="L198"></a><tt class="py-lineno">198</tt> <a class="py-toggle" href="#" id="file_series.current_image-toggle" onclick="return toggle('file_series.current_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#current_image">current_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt [...]
-</div><div id="file_series.current_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.current_image-expanded"><a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-docstring">""" current image in sequence """</tt> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-35" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-35', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name" targets="Method fabio.file_series.file_series.current()=fabio.file_series.file_series-class.html#current,Method fabio.file_series.filename_series.current()=fabio.file_series.filename_series-class.html#current"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-36', 'current', 'link-36');">current</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-comment"># methods which return a file_object</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> </tt>
-<a name="file_series.first_object"></a><div id="file_series.first_object-def"><a name="L204"></a><tt class="py-lineno">204</tt> <a class="py-toggle" href="#" id="file_series.first_object-toggle" onclick="return toggle('file_series.first_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#first_object">first_object</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt c [...]
-</div><div id="file_series.first_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.first_object-expanded"><a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-docstring">""" first image in a sequence """</tt> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-37" class="py-name"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-37', 'filename_object', 'link-2');">filename_object</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.file_series.file_series.first" class="py-name" href="#" oncl [...]
-</div><a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> </tt>
-<a name="file_series.last_object"></a><div id="file_series.last_object-def"><a name="L208"></a><tt class="py-lineno">208</tt> <a class="py-toggle" href="#" id="file_series.last_object-toggle" onclick="return toggle('file_series.last_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#last_object">last_object</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="file_series.last_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.last_object-expanded"><a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-docstring">""" last image in a sequence """</tt> </tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-39" class="py-name"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-39', 'filename_object', 'link-2');">filename_object</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="fabio.file_series.file_series.last" class="py-name" href="#" oncli [...]
-</div><a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> </tt>
-<a name="file_series.next_object"></a><div id="file_series.next_object-def"><a name="L212"></a><tt class="py-lineno">212</tt> <a class="py-toggle" href="#" id="file_series.next_object-toggle" onclick="return toggle('file_series.next_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#next_object">next_object</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class=" [...]
-</div><div id="file_series.next_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.next_object-expanded"><a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-docstring">""" Return the next image """</tt> </tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-41" class="py-name"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-41', 'filename_object', 'link-2');">filename_object</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="fabio.GEimage.GEimage.next
-fabio.edfimage.edfimage.next
-fabio.fabioimage.fabioimage.next
-fabio.file_series.file_series.next
-fabio.file_series.filename_series.next" class="py-name" href="#" onclick="return doclink('link-42', 'next', 'link-11');">next</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> </tt>
-<a name="file_series.previous_object"></a><div id="file_series.previous_object-def"><a name="L216"></a><tt class="py-lineno">216</tt> <a class="py-toggle" href="#" id="file_series.previous_object-toggle" onclick="return toggle('file_series.previous_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#previous_object">previous_object</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class=" [...]
-</div><div id="file_series.previous_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.previous_object-expanded"><a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-docstring">""" Return the previous image """</tt> </tt>
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-43" class="py-name"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-43', 'filename_object', 'link-2');">filename_object</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="fabio.GEimage.GEimage.previous
-fabio.edfimage.edfimage.previous
-fabio.fabioimage.fabioimage.previous
-fabio.file_series.file_series.previous
-fabio.file_series.filename_series.previous" class="py-name" href="#" onclick="return doclink('link-44', 'previous', 'link-32');">previous</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> </tt>
-<a name="file_series.jump_object"></a><div id="file_series.jump_object-def"><a name="L220"></a><tt class="py-lineno">220</tt> <a class="py-toggle" href="#" id="file_series.jump_object-toggle" onclick="return toggle('file_series.jump_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#jump_object">jump_object</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class= [...]
-</div><div id="file_series.jump_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.jump_object-expanded"><a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-docstring">""" jump to and read image """</tt> </tt>
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-45" class="py-name"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-45', 'filename_object', 'link-2');">filename_object</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.file_series.file_series.jump
-fabio.file_series.filename_series.jump" class="py-name" href="#" onclick="return doclink('link-46', 'jump', 'link-34');">jump</a></tt><tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> </tt>
-<a name="file_series.current_object"></a><div id="file_series.current_object-def"><a name="L224"></a><tt class="py-lineno">224</tt> <a class="py-toggle" href="#" id="file_series.current_object-toggle" onclick="return toggle('file_series.current_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.file_series-class.html#current_object">current_object</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op" [...]
-</div><div id="file_series.current_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="file_series.current_object-expanded"><a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> <tt class="py-docstring">""" current image in sequence """</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-47" class="py-name"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-47', 'filename_object', 'link-2');">filename_object</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-48', 'current', 'link-36');">current</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> </tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> </tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> </tt>
-<a name="numbered_file_series"></a><div id="numbered_file_series-def"><a name="L231"></a><tt class="py-lineno">231</tt> <a class="py-toggle" href="#" id="numbered_file_series-toggle" onclick="return toggle('numbered_file_series');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.file_series.numbered_file_series-class.html">numbered_file_series</a><tt class="py-op">(</tt><tt class="py-base-class">file_series</tt><tt class="py-op">)</tt><tt cla [...]
-</div><div id="numbered_file_series-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="numbered_file_series-expanded"><a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"><tt class="py-docstring"> mydata0001.edf = "mydata" + 0001 + ".edf"</tt> </tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"><tt class="py-docstring"> mydata0002.edf = "mydata" + 0002 + ".edf"</tt> </tt>
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"><tt class="py-docstring"> mydata0003.edf = "mydata" + 0003 + ".edf"</tt> </tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="numbered_file_series.__init__"></a><div id="numbered_file_series.__init__-def"><a name="L237"></a><tt class="py-lineno">237</tt> <a class="py-toggle" href="#" id="numbered_file_series.__init__-toggle" onclick="return toggle('numbered_file_series.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.numbered_file_series-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt clas [...]
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-param">digits</tt><tt class="py-op">=</tt><tt class="py-number">4</tt><tt class="py-op">,</tt> <tt class="py-param">padding</tt><tt class="py-op">=</tt><tt class="py-string">'Y'</tt><tt class="py-op">,</tt> <tt class="py-param">step</tt><tt class="py-op">=</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="numbered_file_series.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="numbered_file_series.__init__-expanded"><a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"><tt class="py-docstring"> stem - first part of the name</tt> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"><tt class="py-docstring"> step - in case of every nth file</tt> </tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"><tt class="py-docstring"> padding - possibility for specifying that numbers are not padded</tt> </tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"><tt class="py-docstring"> with zeroes up to digits</tt> </tt>
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">padding</tt> <tt class="py-op">==</tt> <tt class="py-string">'Y'</tt><tt class="py-op">:</tt> </tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s%0"</tt> <tt class="py-op">+</tt> <tt id="link-49" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-49', 'str', 'link-49');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">digits</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">"d%s"</tt> </tt>
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-string">"%s%i%s"</tt> </tt>
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> </tt>
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-name">super</tt><tt class="py-op">(</tt><tt id="link-50" class="py-name" targets="Class fabio.file_series.numbered_file_series=fabio.file_series.numbered_file_series-class.html"><a title="fabio.file_series.numbered_file_series" class="py-name" href="#" onclick="return doclink('link-50', 'numbered_file_series', 'link-50');">numbered_file_series</a></tt><tt class="py-op">,</tt> <tt class="py-name"> [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-51', '__init__', 'link-22');">__init__</a></tt><tt class="py-op">(</tt> </tt>
-<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt class="py-op">[</tt> <tt class="py-name">fmt</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">stem</tt><tt class="py-op">,</tt> <tt id="link-52" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-52', 'i', 'link-52');">i</a></tt><tt class="py-op">,</tt> <tt cla [...]
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt id="link-55" class="py-name"><a title="fabio.file_series.file_series.last" class="py-name" href="#" onclick="return doclink('link-55', 'last', 'link-8');">last</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-name">step</tt><tt class="py-op">)</tt> <tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> </tt>
-<a name="filename_series"></a><div id="filename_series-def"><a name="L256"></a><tt class="py-lineno">256</tt> <a class="py-toggle" href="#" id="filename_series-toggle" onclick="return toggle('filename_series');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html">filename_series</a><tt class="py-op">:</tt> </tt>
-</div><div id="filename_series-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="filename_series-expanded"><a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-docstring">""" Much like the others, but created from a string filename """</tt> </tt>
-<a name="filename_series.__init__"></a><div id="filename_series.__init__-def"><a name="L258"></a><tt class="py-lineno">258</tt> <a class="py-toggle" href="#" id="filename_series.__init__-toggle" onclick="return toggle('filename_series.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt clas [...]
-</div><div id="filename_series.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.__init__-expanded"><a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-docstring">""" create from a filename (String)"""</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-56" class="py-name"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-56', 'filename_object', 'link-2');">filename_object</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> </tt>
-<a name="filename_series.next"></a><div id="filename_series.next-def"><a name="L262"></a><tt class="py-lineno">262</tt> <a class="py-toggle" href="#" id="filename_series.next-toggle" onclick="return toggle('filename_series.next');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#next">next</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="filename_series.next-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.next-expanded"><a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-docstring">""" increment number """</tt> </tt>
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,Method fabio.fabioutils.filename_object.tostring()=fabio.fabioutils.filename_object-class.html#tostring"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-57', 'tostring', 'link-57');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> </tt>
-<a name="filename_series.previous"></a><div id="filename_series.previous-def"><a name="L267"></a><tt class="py-lineno">267</tt> <a class="py-toggle" href="#" id="filename_series.previous-toggle" onclick="return toggle('filename_series.previous');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#previous">previous</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class [...]
-</div><div id="filename_series.previous-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.previous-expanded"><a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-docstring">""" decrement number """</tt> </tt>
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">-=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-58', 'tostring', 'link-57');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> </tt>
-<a name="filename_series.current"></a><div id="filename_series.current-def"><a name="L272"></a><tt class="py-lineno">272</tt> <a class="py-toggle" href="#" id="filename_series.current-toggle" onclick="return toggle('filename_series.current');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#current">current</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</tt><tt class="py-o [...]
-</div><div id="filename_series.current-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.current-expanded"><a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-docstring">""" return current filename string"""</tt> </tt>
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-59', 'tostring', 'link-57');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> </tt>
-<a name="filename_series.jump"></a><div id="filename_series.jump-def"><a name="L276"></a><tt class="py-lineno">276</tt> <a class="py-toggle" href="#" id="filename_series.jump-toggle" onclick="return toggle('filename_series.jump');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#jump">jump</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">num</tt><tt [...]
-</div><div id="filename_series.jump-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.jump-expanded"><a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-docstring">""" jump to a specific number """</tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">num</tt> </tt>
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-60', 'tostring', 'link-57');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-comment"># image methods</tt> </tt>
-<a name="filename_series.next_image"></a><div id="filename_series.next_image-def"><a name="L282"></a><tt class="py-lineno">282</tt> <a class="py-toggle" href="#" id="filename_series.next_image-toggle" onclick="return toggle('filename_series.next_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#next_image">next_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">)</ [...]
-</div><div id="filename_series.next_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.next_image-expanded"><a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the next image as a fabioimage """</tt> </tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-61" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-61', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-62" class="py-name"><a title="fabio.GEimage.GEimage.next
-fabio.edfimage.edfimage.next
-fabio.fabioimage.fabioimage.next
-fabio.file_series.file_series.next
-fabio.file_series.filename_series.next" class="py-name" href="#" onclick="return doclink('link-62', 'next', 'link-11');">next</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="filename_series.prev_image"></a><div id="filename_series.prev_image-def"><a name="L285"></a><tt class="py-lineno">285</tt> <a class="py-toggle" href="#" id="filename_series.prev_image-toggle" onclick="return toggle('filename_series.prev_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#prev_image">prev_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-o [...]
-</div><div id="filename_series.prev_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.prev_image-expanded"><a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the previos image as a fabioimage """</tt> </tt>
-<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-63" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-63', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-64" class="py-name"><a title="fabio.GEimage.GEimage.previous
-fabio.edfimage.edfimage.previous
-fabio.fabioimage.fabioimage.previous
-fabio.file_series.file_series.previous
-fabio.file_series.filename_series.previous" class="py-name" href="#" onclick="return doclink('link-64', 'previous', 'link-32');">previous</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="filename_series.current_image"></a><div id="filename_series.current_image-def"><a name="L288"></a><tt class="py-lineno">288</tt> <a class="py-toggle" href="#" id="filename_series.current_image-toggle" onclick="return toggle('filename_series.current_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#current_image">current_image</a><tt class="py-op">(</tt><tt class="py-param">self</ [...]
-</div><div id="filename_series.current_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.current_image-expanded"><a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the current image as a fabioimage"""</tt> </tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-65" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-65', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name"><a title="fabio.file_series.file_series.current
-fabio.file_series.filename_series.current" class="py-name" href="#" onclick="return doclink('link-66', 'current', 'link-36');">current</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="filename_series.jump_image"></a><div id="filename_series.jump_image-def"><a name="L291"></a><tt class="py-lineno">291</tt> <a class="py-toggle" href="#" id="filename_series.jump_image-toggle" onclick="return toggle('filename_series.jump_image');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#jump_image">jump_image</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-o [...]
-</div><div id="filename_series.jump_image-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.jump_image-expanded"><a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the image number as a fabioimage"""</tt> </tt>
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-67" class="py-name"><a title="fabio.openimage
-fabio.openimage.openimage" class="py-name" href="#" onclick="return doclink('link-67', 'openimage', 'link-4');">openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-68" class="py-name"><a title="fabio.file_series.file_series.jump
-fabio.file_series.filename_series.jump" class="py-name" href="#" onclick="return doclink('link-68', 'jump', 'link-34');">jump</a></tt><tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-comment"># object methods</tt> </tt>
-<a name="filename_series.next_object"></a><div id="filename_series.next_object-def"><a name="L295"></a><tt class="py-lineno">295</tt> <a class="py-toggle" href="#" id="filename_series.next_object-toggle" onclick="return toggle('filename_series.next_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#next_object">next_object</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-o [...]
-</div><div id="filename_series.next_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.next_object-expanded"><a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the next filename as a fabio.filename_object"""</tt> </tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">+=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt> </tt>
-</div><a name="filename_series.previous_object"></a><div id="filename_series.previous_object-def"><a name="L299"></a><tt class="py-lineno">299</tt> <a class="py-toggle" href="#" id="filename_series.previous_object-toggle" onclick="return toggle('filename_series.previous_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#previous_object">previous_object</a><tt class="py-op">(</tt><tt class="py-p [...]
-</div><div id="filename_series.previous_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.previous_object-expanded"><a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the previous filename as a fabio.filename_object"""</tt> </tt>
-<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">-=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt> </tt>
-</div><a name="filename_series.current_object"></a><div id="filename_series.current_object-def"><a name="L303"></a><tt class="py-lineno">303</tt> <a class="py-toggle" href="#" id="filename_series.current_object-toggle" onclick="return toggle('filename_series.current_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#current_object">current_object</a><tt class="py-op">(</tt><tt class="py-param"> [...]
-</div><div id="filename_series.current_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.current_object-expanded"><a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the current filename as a fabio.filename_object"""</tt> </tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt> </tt>
-</div><a name="filename_series.jump_object"></a><div id="filename_series.jump_object-def"><a name="L306"></a><tt class="py-lineno">306</tt> <a class="py-toggle" href="#" id="filename_series.jump_object-toggle" onclick="return toggle('filename_series.jump_object');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.file_series.filename_series-class.html#jump_object">jump_object</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class [...]
-</div><div id="filename_series.jump_object-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="filename_series.jump_object-expanded"><a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt class="py-docstring">""" returns the filename num as a fabio.filename_object"""</tt> </tt>
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt><tt class="py-op">.</tt><tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">num</tt> </tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">obj</tt> </tt>
-</div></div><a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> </tt><script type="text/javascript">
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diff --git a/doc/html/fabio.file_series.file_series-class.html b/doc/html/fabio.file_series.file_series-class.html
deleted file mode 100644
index 6b75ea7..0000000
--- a/doc/html/fabio.file_series.file_series-class.html
+++ /dev/null
@@ -1,642 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.file_series.file_series</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
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-<table class="navbar" border="0" width="100%" cellpadding="0"
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- href="help.html">Help</a> </th>
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-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.file_series-module.html">Module file_series</a> ::
- Class file_series
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.file_series.file_series-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class file_series</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.file_series-pysrc.html#file_series">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- list --+
- |
- <strong class="uidshort">file_series</strong>
-</pre>
-
-<dl><dt>Known Subclasses:</dt>
-<dd>
- <ul class="subclass-list">
-<li><a href="fabio.file_series.numbered_file_series-class.html">numbered_file_series</a></li> </ul>
-</dd></dl>
-
-<hr />
-<pre class="literalblock">
-
-represents a series of files to iterate
-has an idea of a current position to do next and prev
-
-You also get from the list python superclass:
- append
- count
- extend
- insert
- pop
- remove
- reverse
- sort
-
-</pre>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">new empty list</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.file_series.file_series-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">list_of_strings</span>)</span><br />
- arg should be a list of strings which are filenames</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="first"></a><span class="summary-sig-name">first</span>(<span class="summary-sig-arg">self</span>)</span><br />
- first image in series</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.first">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="last"></a><span class="summary-sig-name">last</span>(<span class="summary-sig-arg">self</span>)</span><br />
- last in series</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.last">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="previous"></a><span class="summary-sig-name">previous</span>(<span class="summary-sig-arg">self</span>)</span><br />
- prev in a sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.previous">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="current"></a><span class="summary-sig-name">current</span>(<span class="summary-sig-arg">self</span>)</span><br />
- current position in a sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.current">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="next"></a><span class="summary-sig-name">next</span>(<span class="summary-sig-arg">self</span>)</span><br />
- next in a sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.next">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="jump"></a><span class="summary-sig-name">jump</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- goto a position in sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.jump">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="len"></a><span class="summary-sig-name">len</span>(<span class="summary-sig-arg">self</span>)</span><br />
- number of files</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.len">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="first_image"></a><span class="summary-sig-name">first_image</span>(<span class="summary-sig-arg">self</span>)</span><br />
- first image in a sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.first_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="last_image"></a><span class="summary-sig-name">last_image</span>(<span class="summary-sig-arg">self</span>)</span><br />
- last image in a sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.last_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="next_image"></a><span class="summary-sig-name">next_image</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Return the next image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.next_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="previous_image"></a><span class="summary-sig-name">previous_image</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Return the previous image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.previous_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="jump_image"></a><span class="summary-sig-name">jump_image</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- jump to and read image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.jump_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="current_image"></a><span class="summary-sig-name">current_image</span>(<span class="summary-sig-arg">self</span>)</span><br />
- current image in sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.current_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="first_object"></a><span class="summary-sig-name">first_object</span>(<span class="summary-sig-arg">self</span>)</span><br />
- first image in a sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.first_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="last_object"></a><span class="summary-sig-name">last_object</span>(<span class="summary-sig-arg">self</span>)</span><br />
- last image in a sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.last_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="next_object"></a><span class="summary-sig-name">next_object</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Return the next image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.next_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="previous_object"></a><span class="summary-sig-name">previous_object</span>(<span class="summary-sig-arg">self</span>)</span><br />
- Return the previous image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.previous_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="jump_object"></a><span class="summary-sig-name">jump_object</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- jump to and read image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.jump_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="current_object"></a><span class="summary-sig-name">current_object</span>(<span class="summary-sig-arg">self</span>)</span><br />
- current image in sequence</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.current_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>list</code></b>:
- <code>__add__</code>,
- <code>__contains__</code>,
- <code>__delitem__</code>,
- <code>__delslice__</code>,
- <code>__eq__</code>,
- <code>__ge__</code>,
- <code>__getattribute__</code>,
- <code>__getitem__</code>,
- <code>__getslice__</code>,
- <code>__gt__</code>,
- <code>__iadd__</code>,
- <code>__imul__</code>,
- <code>__iter__</code>,
- <code>__le__</code>,
- <code>__len__</code>,
- <code>__lt__</code>,
- <code>__mul__</code>,
- <code>__ne__</code>,
- <code>__new__</code>,
- <code>__repr__</code>,
- <code>__reversed__</code>,
- <code>__rmul__</code>,
- <code>__setitem__</code>,
- <code>__setslice__</code>,
- <code>__sizeof__</code>,
- <code>append</code>,
- <code>count</code>,
- <code>extend</code>,
- <code>index</code>,
- <code>insert</code>,
- <code>pop</code>,
- <code>remove</code>,
- <code>reverse</code>,
- <code>sort</code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__setattr__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>list</code></b>:
- <code>__hash__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">list_of_strings</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.file_series-pysrc.html#file_series.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>arg should be a list of strings which are filenames</p>
- <dl class="fields">
- <dt>Returns: new empty list</dt>
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.file_series.filename_series-class.html b/doc/html/fabio.file_series.filename_series-class.html
deleted file mode 100644
index a988e02..0000000
--- a/doc/html/fabio.file_series.filename_series-class.html
+++ /dev/null
@@ -1,350 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.file_series.filename_series</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.file_series-module.html">Module file_series</a> ::
- Class filename_series
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.file_series.filename_series-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class filename_series</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series">source code</a></span></p>
-<p>Much like the others, but created from a string filename</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="__init__"></a><span class="summary-sig-name">__init__</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filename</span>)</span><br />
- create from a filename (String)</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="next"></a><span class="summary-sig-name">next</span>(<span class="summary-sig-arg">self</span>)</span><br />
- increment number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.next">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="previous"></a><span class="summary-sig-name">previous</span>(<span class="summary-sig-arg">self</span>)</span><br />
- decrement number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.previous">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="current"></a><span class="summary-sig-name">current</span>(<span class="summary-sig-arg">self</span>)</span><br />
- return current filename string</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.current">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="jump"></a><span class="summary-sig-name">jump</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- jump to a specific number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.jump">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="next_image"></a><span class="summary-sig-name">next_image</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the next image as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.next_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="prev_image"></a><span class="summary-sig-name">prev_image</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the previos image as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.prev_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="current_image"></a><span class="summary-sig-name">current_image</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the current image as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.current_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="jump_image"></a><span class="summary-sig-name">jump_image</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- returns the image number as a fabioimage</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.jump_image">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="next_object"></a><span class="summary-sig-name">next_object</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the next filename as a fabio.filename_object</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.next_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="previous_object"></a><span class="summary-sig-name">previous_object</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the previous filename as a fabio.filename_object</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.previous_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="current_object"></a><span class="summary-sig-name">current_object</span>(<span class="summary-sig-arg">self</span>)</span><br />
- returns the current filename as a fabio.filename_object</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.current_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="jump_object"></a><span class="summary-sig-name">jump_object</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">num</span>)</span><br />
- returns the filename num as a fabio.filename_object</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#filename_series.jump_object">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.file_series.numbered_file_series-class.html b/doc/html/fabio.file_series.numbered_file_series-class.html
deleted file mode 100644
index 5bda476..0000000
--- a/doc/html/fabio.file_series.numbered_file_series-class.html
+++ /dev/null
@@ -1,339 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.file_series.numbered_file_series</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.file_series-module.html">Module file_series</a> ::
- Class numbered_file_series
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.file_series.numbered_file_series-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class numbered_file_series</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.file_series-pysrc.html#numbered_file_series">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- list --+
- |
- <a href="fabio.file_series.file_series-class.html">file_series</a> --+
- |
- <strong class="uidshort">numbered_file_series</strong>
-</pre>
-
-<hr />
-<p>mydata0001.edf = "mydata" + 0001 + ".edf"
- mydata0002.edf = "mydata" + 0002 + ".edf"
- mydata0003.edf = "mydata" + 0003 + ".edf"</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">new empty list</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.file_series.numbered_file_series-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">stem</span>,
- <span class="summary-sig-arg">first</span>,
- <span class="summary-sig-arg">last</span>,
- <span class="summary-sig-arg">extension</span>,
- <span class="summary-sig-arg">digits</span>=<span class="summary-sig-default">4</span>,
- <span class="summary-sig-arg">padding</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">Y</code><code class="variable-quote">'</code></span>,
- <span class="summary-sig-arg">step</span>=<span class="summary-sig-default">1</span>)</span><br />
- stem - first part of the name...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.file_series-pysrc.html#numbered_file_series.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.file_series.file_series-class.html">file_series</a></code></b>:
- <code><a href="fabio.file_series.file_series-class.html#current">current</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#current_image">current_image</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#current_object">current_object</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#first">first</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#first_image">first_image</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#first_object">first_object</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#jump">jump</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#jump_image">jump_image</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#jump_object">jump_object</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#last">last</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#last_image">last_image</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#last_object">last_object</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#len">len</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#next">next</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#next_image">next_image</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#next_object">next_object</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#previous">previous</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#previous_image">previous_image</a></code>,
- <code><a href="fabio.file_series.file_series-class.html#previous_object">previous_object</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>list</code></b>:
- <code>__add__</code>,
- <code>__contains__</code>,
- <code>__delitem__</code>,
- <code>__delslice__</code>,
- <code>__eq__</code>,
- <code>__ge__</code>,
- <code>__getattribute__</code>,
- <code>__getitem__</code>,
- <code>__getslice__</code>,
- <code>__gt__</code>,
- <code>__iadd__</code>,
- <code>__imul__</code>,
- <code>__iter__</code>,
- <code>__le__</code>,
- <code>__len__</code>,
- <code>__lt__</code>,
- <code>__mul__</code>,
- <code>__ne__</code>,
- <code>__new__</code>,
- <code>__repr__</code>,
- <code>__reversed__</code>,
- <code>__rmul__</code>,
- <code>__setitem__</code>,
- <code>__setslice__</code>,
- <code>__sizeof__</code>,
- <code>append</code>,
- <code>count</code>,
- <code>extend</code>,
- <code>index</code>,
- <code>insert</code>,
- <code>pop</code>,
- <code>remove</code>,
- <code>reverse</code>,
- <code>sort</code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__setattr__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>list</code></b>:
- <code>__hash__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">stem</span>,
- <span class="sig-arg">first</span>,
- <span class="sig-arg">last</span>,
- <span class="sig-arg">extension</span>,
- <span class="sig-arg">digits</span>=<span class="sig-default">4</span>,
- <span class="sig-arg">padding</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">Y</code><code class="variable-quote">'</code></span>,
- <span class="sig-arg">step</span>=<span class="sig-default">1</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.file_series-pysrc.html#numbered_file_series.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-stem - first part of the name
-step - in case of every nth file
-padding - possibility for specifying that numbers are not padded
- with zeroes up to digits
-
-</pre>
- <dl class="fields">
- <dt>Returns: new empty list</dt>
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.fit2dmaskimage-module.html b/doc/html/fabio.fit2dmaskimage-module.html
deleted file mode 100644
index 4e620ce..0000000
--- a/doc/html/fabio.fit2dmaskimage-module.html
+++ /dev/null
@@ -1,158 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fit2dmaskimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module fit2dmaskimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fit2dmaskimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module fit2dmaskimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html">source code</a></span></p>
-<p>Author: Andy Hammersley, ESRF Translation into python/fabio: Jon
- Wright, ESRF</p>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html" class="summary-name">fit2dmaskimage</a><br />
- Read and try to write Andy Hammersley's mask format
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
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--- a/doc/html/fabio.fit2dmaskimage-pysrc.html
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- <a href="fabio-module.html">Package fabio</a> ::
- Module fit2dmaskimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fit2dmaskimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
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-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.fit2dmaskimage-module.html">Module fabio.fit2dmaskimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">## Automatically adapted for numpy.oldnumeric Oct 05, 2007 by alter_code1.py</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">Author: Andy Hammersley, ESRF</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">Translation into python/fabio: Jon Wright, ESRF</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"> </tt>
-<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-0', 'fabioimage', 'link-0');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-0');">fabioimage</a></tt> </tt>
-<a name="fit2dmaskimage"></a><div id="fit2dmaskimage-def"><a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> </tt>
-<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> </tt>
-<a name="L15"></a><tt class="py-lineno">15</tt> <a class="py-toggle" href="#" id="fit2dmaskimage-toggle" onclick="return toggle('fit2dmaskimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.fit2dmaskimage.fit2dmaskimage-class.html">fit2dmaskimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="fit2dmaskimage-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="fit2dmaskimage-expanded"><a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> <tt class="py-docstring">""" Read and try to write Andy Hammersley's mask format """</tt> </tt>
-<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"> </tt>
-<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"> </tt>
-<a name="fit2dmaskimage._readheader"></a><div id="fit2dmaskimage._readheader-def"><a name="L19"></a><tt class="py-lineno">19</tt> <a class="py-toggle" href="#" id="fit2dmaskimage._readheader-toggle" onclick="return toggle('fit2dmaskimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fit2dmaskimage.fit2dmaskimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">, [...]
-</div><div id="fit2dmaskimage._readheader-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="fit2dmaskimage._readheader-expanded"><a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"><tt class="py-docstring"> Read in a header from an already open file</tt> </tt>
-<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"> <tt class="py-comment"># 1024 bytes gives 256x32 bit integers</tt> </tt>
-<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> <tt id="link-2" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-2', 'header', 'link-2');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Method fabio.GEimage.GEimage.re [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-3', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">1024</tt><tt class="py-op">)</tt> </tt>
-<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-4" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-4', 'i', 'link-4');">i</a></tt><tt class="py-op">,</tt> <tt class="py-name">j</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt> <tt class="py-op">(</tt><tt class="py-string">"M"</tt><tt [...]
-<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"A"</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"S"</tt><tt class="py-op">,</tt> <tt class="py-number">8</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"K"</tt><tt class="py-op">,</tt> <tt class="py-number">12</tt><tt class="py-op">)</tt> <tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-5" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-5', 'header', 'link-2');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">j</tt><tt class="py-op">]</tt> <tt class="py-op">!=</tt> <tt id="link-6" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclin [...]
-<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Not a fit2d mask file"</tt><tt class="py-op">)</tt> </tt>
-<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt class="py-name">fit2dhdr</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt id="link-7" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-7', 'header', 'link-2');">header</a></tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op"> [...]
-<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-8', 'dim1', 'link-8');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">fit2dhdr</tt><tt class="py-op">[</tt><tt class="py-number">4</tt [...]
-<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-9', 'dim2', 'link-9');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">fit2dhdr</tt><tt class="py-op">[</tt><tt class="py-number">5</tt [...]
-</div><a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> </tt>
-<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> </tt>
-<a name="fit2dmaskimage.read"></a><div id="fit2dmaskimage.read-def"><a name="L36"></a><tt class="py-lineno">36</tt> <a class="py-toggle" href="#" id="fit2dmaskimage.read-toggle" onclick="return toggle('fit2dmaskimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fit2dmaskimage.fit2dmaskimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt c [...]
-</div><div id="fit2dmaskimage.read-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="fit2dmaskimage.read-expanded"><a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and</tt> </tt>
-<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data</tt> </tt>
-<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> <tt class="py-name">fin</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-10', '_open', 'link-10');">_open</a></tt><tt class="py-op">(</tt><tt class="p [...]
-<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._read [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-11', '_readheader', 'link-11');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">fin</tt><tt class="py-op">)</tt> </tt>
-<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> <tt class="py-comment"># Compute image size</tt> </tt>
-<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-12', 'bytecode', 'link-12');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt cla [...]
-<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-13', 'bpp', 'link-13');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-14" class="py-name" targets="Method fabio.file_series.file_series.len()=f [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-16', 'tostring', 'link-16');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> </tt>
-<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"> <tt class="py-comment"># integer division</tt> </tt>
-<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt class="py-name">num_ints</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-17', 'dim1', 'link-8');">dim1</a></tt> <tt class="py-op">+</tt> <tt class="py-number">31</tt><tt class="py-op">)</tt> <tt class="py-op">//</tt> <tt cla [...]
-<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt class="py-name">total</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-18', 'dim2', 'link-9');">dim2</a></tt> <tt class="py-op">*</tt> <tt class="py-name">num_ints</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt> </tt>
-<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> <tt id="link-19" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-19', 'data', 'link-19');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">fin</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-20', 'read', 'link-3');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">total</tt><tt class="py-op">)</tt> </tt>
-<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-21" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-21', 'len', 'link-14');">len</a></tt><tt class="py-op">(</tt><tt id="link-22" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-22', 'data', 'link-19');">data</a></tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">total</tt> </tt>
-<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"> <tt class="py-name">fin</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"> </tt>
-<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> <tt class="py-comment"># Now to unpack it</tt> </tt>
-<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> <tt id="link-23" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-23', 'data', 'link-19');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-24', 'data', 'link-19');">data</a></tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">)</tt> </tt>
-<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt id="link-25" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-25', 'data', 'link-19');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt><tt id="link-26" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-26', 'data', 'link-19');">data</a></tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-27', 'dim2', 'link-9');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">num_ints</tt> <tt class="py-op">*</tt> <tt class="py-nu [...]
-<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> </tt>
-<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> <tt class="py-name">result</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-28', 'dim2', 'link-9');">dim2</a></tt><tt cla [...]
-<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> </tt>
-<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"> <tt class="py-comment"># Unpack using bitwise comparisons to 2**n</tt> </tt>
-<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"> <tt class="py-name">bits</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">ones</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">)</tt> </tt>
-<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-29" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-29', 'i', 'link-4');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-number">8</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"> <tt class="py-name">temp</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">bitwise_and</tt><tt class="py-op">(</tt><tt class="py-name">bits</tt><tt class="py-op">,</tt> <tt id="link-30" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-30', 'data', 'link-19');">data</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"> <tt class="py-name">result</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt> <tt id="link-31" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-31', 'i', 'link-4');">i</a></tt><tt class="py-op">:</tt><tt class="py-op">:</tt><tt class="py-number">8</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">temp</tt><t [...]
-<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"> <tt class="py-name">bits</tt> <tt class="py-op">=</tt> <tt class="py-name">bits</tt> <tt class="py-op">*</tt> <tt class="py-number">2</tt> </tt>
-<a name="L66"></a><tt class="py-lineno">66</tt> <tt class="py-line"> <tt class="py-comment"># Extra rows needed for packing odd dimensions</tt> </tt>
-<a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"> <tt class="py-name">spares</tt> <tt class="py-op">=</tt> <tt class="py-name">num_ints</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt> <tt class="py-op">*</tt> <tt class="py-number">8</tt> <tt class="py-op">-</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-32', 'dim1 [...]
-<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">spares</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-33', 'data', 'link-19');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">where</tt><tt class="py-op">(</tt><tt class="py-name">result</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L71"></a><tt class="py-lineno">71</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-34', 'data', 'link-19');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">where</tt><tt class="py-op">(</tt><tt class="py-name">result</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">-</tt><tt class="py-name">spares</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> [...]
-<a name="L72"></a><tt class="py-lineno">72</tt> <tt class="py-line"> <tt class="py-comment"># Transpose appears to be needed to match edf reader (scary??)</tt> </tt>
-<a name="L73"></a><tt class="py-lineno">73</tt> <tt class="py-line"><tt class="py-comment"># self.data = numpy.transpose(self.data)</tt> </tt>
-<a name="L74"></a><tt class="py-lineno">74</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-35', 'data', 'link-19');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-36', 'data', 'link-19');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L75"></a><tt class="py-lineno">75</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-37', 'dim2', 'link-9');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.edfimage.edfimage [...]
-<a name="L76"></a><tt class="py-lineno">76</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L77"></a><tt class="py-lineno">77</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L78"></a><tt class="py-lineno">78</tt> <tt class="py-line"> </tt>
-<a name="L79"></a><tt class="py-lineno">79</tt> <tt class="py-line"> </tt>
-<a name="L80"></a><tt class="py-lineno">80</tt> <tt class="py-line"> </tt>
-<a name="fit2dmaskimage.write"></a><div id="fit2dmaskimage.write-def"><a name="L81"></a><tt class="py-lineno">81</tt> <a class="py-toggle" href="#" id="fit2dmaskimage.write-toggle" onclick="return toggle('fit2dmaskimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fit2dmaskimage.fit2dmaskimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt [...]
-</div><div id="fit2dmaskimage.write-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="fit2dmaskimage.write-expanded"><a name="L82"></a><tt class="py-lineno">82</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L83"></a><tt class="py-lineno">83</tt> <tt class="py-line"><tt class="py-docstring"> Try to write a file</tt> </tt>
-<a name="L84"></a><tt class="py-lineno">84</tt> <tt class="py-line"><tt class="py-docstring"> check we can write zipped also</tt> </tt>
-<a name="L85"></a><tt class="py-lineno">85</tt> <tt class="py-line"><tt class="py-docstring"> mimics that fabian was writing uint16 (we sometimes want floats)</tt> </tt>
-<a name="L86"></a><tt class="py-lineno">86</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L87"></a><tt class="py-lineno">87</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Not implemented yet"</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L88"></a><tt class="py-lineno">88</tt> <tt class="py-line"> </tt>
-<a name="L89"></a><tt class="py-lineno">89</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="fit2dmaskimage.checkData"></a><div id="fit2dmaskimage.checkData-def"><a name="L90"></a><tt class="py-lineno">90</tt> <a class="py-toggle" href="#" id="fit2dmaskimage.checkData-toggle" onclick="return toggle('fit2dmaskimage.checkData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fit2dmaskimage.fit2dmaskimage-class.html#checkData">checkData</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">=</tt><tt cla [...]
-</div><div id="fit2dmaskimage.checkData-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="fit2dmaskimage.checkData-expanded"><a name="L91"></a><tt class="py-lineno">91</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-39" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-39', 'data', 'link-19');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L92"></a><tt class="py-lineno">92</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L93"></a><tt class="py-lineno">93</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L94"></a><tt class="py-lineno">94</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-40" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-40', 'data', 'link-19');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L95"></a><tt class="py-lineno">95</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
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diff --git a/doc/html/fabio.fit2dmaskimage.fit2dmaskimage-class.html b/doc/html/fabio.fit2dmaskimage.fit2dmaskimage-class.html
deleted file mode 100644
index bf17bd1..0000000
--- a/doc/html/fabio.fit2dmaskimage.fit2dmaskimage-class.html
+++ /dev/null
@@ -1,453 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fit2dmaskimage.fit2dmaskimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
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- href="module-tree.html">Trees</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.fit2dmaskimage-module.html">Module fit2dmaskimage</a> ::
- Class fit2dmaskimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class fit2dmaskimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">fit2dmaskimage</strong>
-</pre>
-
-<hr />
-<p>Read and try to write Andy Hammersley's mask format</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
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- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Read in a header from an already open file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- Try to write a file check we can write zipped also mimics that fabian
- was writing uint16 (we sometimes want floats)</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html#checkData" class="summary-sig-name">checkData</a>(<span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage.checkData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in a header from an already open file</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Read in header into self.header and
- the data into self.data
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>Try to write a file check we can write zipped also mimics that fabian
- was writing uint16 (we sometimes want floats)</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="checkData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">checkData</span>(<span class="sig-arg">data</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fit2dmaskimage-pysrc.html#fit2dmaskimage.checkData">source code</a></span>
- </td>
- </tr></table>
-
- <p>Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#checkData">fabioimage.fabioimage.checkData</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.fit2dspreadsheetimage-module.html b/doc/html/fabio.fit2dspreadsheetimage-module.html
deleted file mode 100644
index 3dcfbc5..0000000
--- a/doc/html/fabio.fit2dspreadsheetimage-module.html
+++ /dev/null
@@ -1,162 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fit2dspreadsheetimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module fit2dspreadsheetimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fit2dspreadsheetimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module fit2dspreadsheetimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fit2dspreadsheetimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Read the fit2d ascii image output
- + Jon Wright, ESRF
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html" class="summary-name">fit2dspreadsheetimage</a><br />
- Read a fit2d ascii format
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.fit2dspreadsheetimage-pysrc.html b/doc/html/fabio.fit2dspreadsheetimage-pysrc.html
deleted file mode 100644
index dcc44ca..0000000
--- a/doc/html/fabio.fit2dspreadsheetimage-pysrc.html
+++ /dev/null
@@ -1,244 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fit2dspreadsheetimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module fit2dspreadsheetimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fit2dspreadsheetimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.fit2dspreadsheetimage-module.html">Module fabio.fit2dspreadsheetimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Read the fit2d ascii image output</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> + Jon Wright, ESRF</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-0', 'fabioimage', 'link-0');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-0');">fabioimage</a></tt> </tt>
-<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"> </tt>
-<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"> </tt>
-<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"> </tt>
-<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> </tt>
-<a name="fit2dspreadsheetimage"></a><div id="fit2dspreadsheetimage-def"><a name="L15"></a><tt class="py-lineno">15</tt> <a class="py-toggle" href="#" id="fit2dspreadsheetimage-toggle" onclick="return toggle('fit2dspreadsheetimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html">fit2dspreadsheetimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op"> [...]
-</div><div id="fit2dspreadsheetimage-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="fit2dspreadsheetimage-expanded"><a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"><tt class="py-docstring"> Read a fit2d ascii format</tt> </tt>
-<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> </tt>
-<a name="fit2dspreadsheetimage._readheader"></a><div id="fit2dspreadsheetimage._readheader-def"><a name="L20"></a><tt class="py-lineno">20</tt> <a class="py-toggle" href="#" id="fit2dspreadsheetimage._readheader-toggle" onclick="return toggle('fit2dspreadsheetimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt cla [...]
-</div><div id="fit2dspreadsheetimage._readheader-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="fit2dspreadsheetimage._readheader-expanded"><a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"><tt class="py-docstring"> TODO : test for minimal attributes?</tt> </tt>
-<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L26"></a><tt class="py-lineno">26</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt class="py-name">items</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> <tt class="py-name">xdim</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">items</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt class="py-name">ydim</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">items</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> </tt>
-<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-2" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-2', 'header', 'link-2');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'title'</tt><tt class="py-op">]</tt> <tt class="py-op" [...]
-<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-3" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-3', 'header', 'link-2');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Dim_1'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">xdim</tt> </tt>
-<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-4" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-4', 'header', 'link-2');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Dim_2'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">ydim</tt> </tt>
-</div><a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> </tt>
-<a name="fit2dspreadsheetimage.read"></a><div id="fit2dspreadsheetimage.read-def"><a name="L36"></a><tt class="py-lineno">36</tt> <a class="py-toggle" href="#" id="fit2dspreadsheetimage.read-toggle" onclick="return toggle('fit2dspreadsheetimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">, [...]
-</div><div id="fit2dspreadsheetimage.read-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="fit2dspreadsheetimage.read-expanded"><a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and</tt> </tt>
-<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data</tt> </tt>
-<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-5', 'header', 'link-2');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-6', 'resetvals', 'link-6');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-7', '_open', 'link-7');">_open</a></tt><tt class="py-op">(</tt><tt class="p [...]
-<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-8" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._readh [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-8', '_readheader', 'link-8');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"> <tt class="py-comment"># Compute image size</tt> </tt>
-<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-9', 'dim1', 'link-9');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt [...]
-<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-11', 'dim2', 'link-11');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self< [...]
-<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"file"</tt><tt class="py-op">,</tt> <tt id="link-13" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-13', 'str', 'link-13');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"> <tt class="py-string">"is corrupt, cannot read it"</tt><tt class="py-op">)</tt> </tt>
-<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"> <tt id="link-14" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-14', 'bytecode', 'link-14');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt> </tt>
-<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"> </tt>
-<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-15', 'bpp', 'link-15');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-16" class="py-name" targets="Method fabio.file_series.file_series.len()=f [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-18', 'tostring', 'link-18');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> </tt>
-<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt class="py-comment">#now read the data into the array</tt> </tt>
-<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> <tt class="py-name">vals</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">line</tt> <tt class="py-keyword">in</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readlines</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"> <tt class="py-name">vals</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">x</tt><tt class="py-op">)</tt> <tt class="py-keyword">for</tt> <tt class="py-name">x</tt> <tt class="py-keyword">in</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">spl [...]
-<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"> <tt class="py-keyword">pass</tt> </tt>
-<a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-19', 'data', 'link-19');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-name">vals</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt id="link-20" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" [...]
-<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-21', 'data', 'link-19');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">==</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-22', 'dim2', 'link-11');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name [...]
-<a name="L66"></a><tt class="py-lineno">66</tt> <tt class="py-line"> </tt>
-<a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">"Error reading ascii"</tt> </tt>
-<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"> </tt>
-<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-24', 'resetvals', 'link-6');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L71"></a><tt class="py-lineno">71</tt> <tt class="py-line"> <tt class="py-comment"># ensure the PIL image is reset</tt> </tt>
-<a name="L72"></a><tt class="py-lineno">72</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L73"></a><tt class="py-lineno">73</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div></div><a name="L74"></a><tt class="py-lineno">74</tt> <tt class="py-line"> </tt>
-<a name="L75"></a><tt class="py-lineno">75</tt> <tt class="py-line"> </tt>
-<a name="L76"></a><tt class="py-lineno">76</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">__name__</tt> <tt class="py-op">==</tt> <tt class="py-string">"__main__"</tt><tt class="py-op">:</tt> </tt>
-<a name="L77"></a><tt class="py-lineno">77</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">sys</tt><tt class="py-op">,</tt> <tt class="py-name">time</tt> </tt>
-<a name="L78"></a><tt class="py-lineno">78</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">time</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L79"></a><tt class="py-lineno">79</tt> <tt class="py-line"> <tt class="py-name">img</tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name" targets="Module fabio.fit2dspreadsheetimage=fabio.fit2dspreadsheetimage-module.html,Class fabio.fit2dspreadsheetimage.fit2dspreadsheetimage=fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html"><a title="fabio.fit2dspreadsheetimage
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage" class="py-name" href="#" onclick="return doclink('link-25', 'fit2dspreadsheetimage', 'link-25');">fit2dspreadsheetimage</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L80"></a><tt class="py-lineno">80</tt> <tt class="py-line"> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDimage.read()=fabio.OXDimage.OXDimage-class.html#read,Metho [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-26', 'read', 'link-26');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">argv</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L81"></a><tt class="py-lineno">81</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">time</tt><tt class="py-op">.</tt><tt class="py-name">time</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">-</tt> <tt class="py-name">start</tt> </tt>
-<a name="L82"></a><tt class="py-lineno">82</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-27', 'dim1', 'link-9');">dim1</a></tt><tt class="py-op">,</tt> <tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" h [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-29', 'data', 'link-19');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L83"></a><tt class="py-lineno">83</tt> <tt class="py-line"> <tt class="py-keyword">from</tt> <tt class="py-name">matplotlib</tt><tt class="py-op">.</tt><tt class="py-name">pylab</tt> <tt class="py-keyword">import</tt> <tt class="py-name">imshow</tt><tt class="py-op">,</tt> <tt class="py-name">show</tt> </tt>
-<a name="L84"></a><tt class="py-lineno">84</tt> <tt class="py-line"> <tt class="py-name">imshow</tt><tt class="py-op">(</tt><tt class="py-name">img</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-30', 'data', 'link-19');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">T</tt><tt class="py-op">)</tt> </tt>
-<a name="L85"></a><tt class="py-lineno">85</tt> <tt class="py-line"> <tt class="py-name">show</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L86"></a><tt class="py-lineno">86</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html b/doc/html/fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html
deleted file mode 100644
index 159a3d9..0000000
--- a/doc/html/fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html
+++ /dev/null
@@ -1,369 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.fit2dspreadsheetimage.fit2dspreadsheetimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.fit2dspreadsheetimage-module.html">Module fit2dspreadsheetimage</a> ::
- Class fit2dspreadsheetimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class fit2dspreadsheetimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.fit2dspreadsheetimage-pysrc.html#fit2dspreadsheetimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">fit2dspreadsheetimage</strong>
-</pre>
-
-<hr />
-<p>Read a fit2d ascii format</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- TODO : test for minimal attributes?</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fit2dspreadsheetimage-pysrc.html#fit2dspreadsheetimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.fit2dspreadsheetimage-pysrc.html#fit2dspreadsheetimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#write">write</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fit2dspreadsheetimage-pysrc.html#fit2dspreadsheetimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>TODO : test for minimal attributes?</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.fit2dspreadsheetimage-pysrc.html#fit2dspreadsheetimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Read in header into self.header and
- the data into self.data
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
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- >http://epydoc.sourceforge.net</a>
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.kcdimage-module.html b/doc/html/fabio.kcdimage-module.html
deleted file mode 100644
index 05f4f19..0000000
--- a/doc/html/fabio.kcdimage-module.html
+++ /dev/null
@@ -1,238 +0,0 @@
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- <a href="fabio-module.html">Package fabio</a> ::
- Module kcdimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.kcdimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module kcdimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.kcdimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Authors: Jerome Kieffer, ESRF
- email:jerome.kieffer at esrf.fr
-
-kcd images are 2D images written by the old KappaCCD diffractometer built by Nonius in the 1990's
-Based on the edfimage.py parser.
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.kcdimage.kcdimage-class.html" class="summary-name">kcdimage</a><br />
- Read the Nonius kcd data format
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
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- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- </td>
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-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("kcdimage")">logging.getLogger("kcdimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="DATA_TYPES"></a><span class="summary-name">DATA_TYPES</span> = <code title="{'u16': <type 'numpy.uint16'>}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">u16</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.uint16'><code class="variable-group">}</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.kcdimage-module.html#MINIMUM_KEYS" class="summary-name">MINIMUM_KEYS</a> = <code title="['ByteOrder',
- 'Data type',
- 'X dimension',
- 'Y dimension',
- 'Number of readouts']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">ByteOrder</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">Data type</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">X dimension</code><code class="variable-quote">'</code [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="DEFAULT_VALUES"></a><span class="summary-name">DEFAULT_VALUES</span> = <code title="{'Data type': 'u16'}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">Data type</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">u16</code><code class="variable-quote">'</code><code class="variable-group">}</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
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-</table>
-<a name="MINIMUM_KEYS"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">MINIMUM_KEYS</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">ByteOrder</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Data type</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">X dimension</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Y dimension</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">Number of readouts</code><code class="variable-quote">'</code><code class="variable-group">]</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
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diff --git a/doc/html/fabio.kcdimage-pysrc.html b/doc/html/fabio.kcdimage-pysrc.html
deleted file mode 100644
index 34ddd64..0000000
--- a/doc/html/fabio.kcdimage-pysrc.html
+++ /dev/null
@@ -1,410 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.kcdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
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- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module kcdimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.kcdimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.kcdimage-module.html">Module fabio.kcdimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">Authors: Jerome Kieffer, ESRF </tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"> email:jerome.kieffer at esrf.fr</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring">kcd images are 2D images written by the old KappaCCD diffractometer built by Nonius in the 1990's</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">Based on the edfimage.py parser.</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">os</tt><tt class="py-op">,</tt> <tt class="py-name">string</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-0', 'fabioimage', 'link-0');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-0');">fabioimage</a></tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt id="link-2" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-2', 'logger', 'link-2');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"kcdimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt id="link-3" class="py-name" targets="Variable fabio.cbfimage.DATA_TYPES=fabio.cbfimage-module.html#DATA_TYPES,Variable fabio.dm3image.DATA_TYPES=fabio.dm3image-module.html#DATA_TYPES,Variable fabio.edfimage.DATA_TYPES=fabio.edfimage-module.html#DATA_TYPES,Variable fabio.kcdimage.DATA_TYPES=fabio.kcdimage-module.html#DATA_TYPES"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-3', 'DATA_TYPES', 'link-3');">DATA_TYPES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">"u16"</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> <tt class="py-op">}</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable fabio.cbfimage.MINIMUM_KEYS=fabio.cbfimage-module.html#MINIMUM_KEYS,Variable fabio.edfimage.MINIMUM_KEYS=fabio.edfimage-module.html#MINIMUM_KEYS,Variable fabio.kcdimage.MINIMUM_KEYS=fabio.kcdimage-module.html#MINIMUM_KEYS"><a title="fabio.cbfimage.MINIMUM_KEYS
-fabio.edfimage.MINIMUM_KEYS
-fabio.kcdimage.MINIMUM_KEYS" class="py-name" href="#" onclick="return doclink('link-4', 'MINIMUM_KEYS', 'link-4');">MINIMUM_KEYS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> <tt class="py-string">'ByteOrder'</tt><tt class="py-op">,</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-string">'Data type'</tt><tt class="py-op">,</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> <tt class="py-string">'X dimension'</tt><tt class="py-op">,</tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt class="py-string">'Y dimension'</tt><tt class="py-op">,</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-string">'Number of readouts'</tt><tt class="py-op">]</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt id="link-5" class="py-name" targets="Variable fabio.edfimage.DEFAULT_VALUES=fabio.edfimage-module.html#DEFAULT_VALUES,Variable fabio.kcdimage.DEFAULT_VALUES=fabio.kcdimage-module.html#DEFAULT_VALUES"><a title="fabio.edfimage.DEFAULT_VALUES
-fabio.kcdimage.DEFAULT_VALUES" class="py-name" href="#" onclick="return doclink('link-5', 'DEFAULT_VALUES', 'link-5');">DEFAULT_VALUES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-string">"Data type"</tt><tt class="py-op">:</tt> <tt class="py-string">"u16"</tt> <tt class="py-op">}</tt> </tt>
-<a name="kcdimage"></a><div id="kcdimage-def"><a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <a class="py-toggle" href="#" id="kcdimage-toggle" onclick="return toggle('kcdimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.kcdimage.kcdimage-class.html">kcdimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="kcdimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="kcdimage-expanded"><a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-docstring">""" </tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt class="py-docstring"> Read the Nonius kcd data format """</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> </tt>
-<a name="kcdimage._readheader"></a><div id="kcdimage._readheader-def"><a name="L34"></a><tt class="py-lineno"> 34</tt> <a class="py-toggle" href="#" id="kcdimage._readheader-toggle" onclick="return toggle('kcdimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.kcdimage.kcdimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">infile</ [...]
-</div><div id="kcdimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="kcdimage._readheader-expanded"><a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-docstring"> Read in a header in some KCD format from an already open file</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-docstring"> @</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-name">oneLine</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-name">alphanum</tt> <tt class="py-op">=</tt> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">digits</tt> <tt class="py-op">+</tt> <tt class="py-name">string</tt><tt class="py-op">.</tt><tt class="py-name">letters</tt> <tt class="py-op">+</tt> <tt class="py-string">". "</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">asciiHeader</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">oneChar</tt> <tt class="py-keyword">in</tt> <tt class="py-name">oneLine</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">oneChar</tt> <tt class="py-keyword">in</tt> <tt class="py-name">alphanum</tt><tt class="py-op">:</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-name">asciiHeader</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">asciiHeader</tt> <tt class="py-keyword">is</tt> <tt class="py-name">False</tt><tt class="py-op">:</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-comment"># This does not look like an edf file</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt id="link-6" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-6', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"First line of %s does not seam to be ascii text!"</tt> <tt class="py-op">%</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">name</tt><tt class="py-op">)</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-name">endOfHeaders</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-keyword">not</tt> <tt class="py-name">endOfHeaders</tt><tt class="py-op">:</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-name">oneLine</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-7" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-7', 'len', 'link-7');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">oneLine</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt c [...]
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-name">endOfHeaders</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">oneLine</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-string">"Binned mode"</tt><tt class="py-op">:</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-name">oneLine</tt> <tt class="py-op">=</tt> <tt class="py-string">"Mode = Binned"</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt id="link-8" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-8', 'key', 'link-8');">key</a></tt><tt class="py-op">,</tt> <tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">oneLine</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py- [...]
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-name">endOfHeaders</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt id="link-9" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-9', 'key', 'link-8');">key</a></tt> <tt class="py-op">=</tt> <tt id="link-10" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-10', 'key', 'link-8');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(< [...]
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimage.edfimage-class.html#header_keys"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-11', 'header_keys', 'link-11');">header_keys</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="p [...]
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-13', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt id="link-14" class="py-name"><a title="fabio.fabioutils.key" cla [...]
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-name">missing</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">item</tt> <tt class="py-keyword">in</tt> <tt id="link-15" class="py-name"><a title="fabio.cbfimage.MINIMUM_KEYS
-fabio.edfimage.MINIMUM_KEYS
-fabio.kcdimage.MINIMUM_KEYS" class="py-name" href="#" onclick="return doclink('link-15', 'MINIMUM_KEYS', 'link-4');">MINIMUM_KEYS</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">item</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-16', 'header_keys', 'link-11');">header_keys</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-name">missing</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">item</tt><tt class="py-op">)</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-17" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-17', 'len', 'link-7');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">missing</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt id="link-18" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-18', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"KCD file misses the keys "</tt> <tt class="py-op">+</tt> <tt class="py-string">" "</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">missing</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> </tt>
-<a name="kcdimage.read"></a><div id="kcdimage.read-def"><a name="L74"></a><tt class="py-lineno"> 74</tt> <a class="py-toggle" href="#" id="kcdimage.read-toggle" onclick="return toggle('kcdimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.kcdimage.kcdimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py-p [...]
-</div><div id="kcdimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="kcdimage.read-expanded"><a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt class="py-docstring"> Read in header into self.header and</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt class="py-docstring"> the data into self.data</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-19', 'header', 'link-13');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-20', 'resetvals', 'link-20');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-21', '_open', 'link-21');">_open</a></tt><tt class="py-op">(</tt><tt clas [...]
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._rea [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-22', '_readheader', 'link-22');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-comment"># Compute image size</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-23', 'dim1', 'link-23');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self [...]
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-25', 'dim2', 'link-25');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self [...]
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"KCD file %s is corrupt, cannot read it"</tt> <tt class="py-op">%</tt> <tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt id="link-27" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-27', 'bytecode', 'link-27');">bytecode</a></tt> <tt class="py-op">=</tt> <tt id="link-28" class="py-name"><a title="fabio.cbfimage.DATA_TYPES
-fabio.dm3image.DATA_TYPES
-fabio.edfimage.DATA_TYPES
-fabio.kcdimage.DATA_TYPES" class="py-name" href="#" onclick="return doclink('link-28', 'DATA_TYPES', 'link-3');">DATA_TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-29', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Data type'</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-30', 'bpp', 'link-30');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-31" class="py-name"><a title="fabio.file_series.file_series.len" cla [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-33', 'tostring', 'link-33');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt id="link-34" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-34', 'bytecode', 'link-27');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-35', 'bpp', 'link-30');">bpp</a></tt> <tt class="py-op">=</tt> <tt class="py-number">2</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt id="link-36" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-36', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Defaulting type to uint16"</tt><tt class="py-op">)</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-name">nbReadOut</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-37', 'header', 'link-13');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'Number of readouts'</tt>< [...]
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt id="link-38" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-38', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Defaulting number of ReadOut to 1"</tt><tt class="py-op">)</tt> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">nbReadOut</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">fileSize</tt> <tt class="py-op">=</tt> <tt class="py-name">os</tt><tt class="py-op">.</tt><tt class="py-name">stat</tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">6</tt><tt class="py-op">]</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-name">expected_size</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-39', 'dim1', 'link-23');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="fabio.e [...]
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">fileSize</tt> <tt class="py-op">-</tt> <tt class="py-name">expected_size</tt><tt class="py-op">)</tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">block</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDim [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-42', 'read', 'link-42');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-43" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-43', 'len', 'link-7');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">expected_size</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-comment">#now read the data into the array</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-44', 'data', 'link-44');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-45', 'dim2', 'link-25');">dim [...]
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-47" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-47', 'i', 'link-47');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">nbReadOut</tt><tt class="py-op">)</tt><tt class="py [...]
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-48', 'data', 'link-44');">data</a></tt> <tt class="py-op">+=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-name">block</tt><tt class="py-op">[</tt><tt id="link-49" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-49', 'i', 'link-47');">i</a></tt> <tt class="py-op">*</tt> <tt class="py-name">expected_size</tt> <tt class="py-op">/</tt> <tt class="py-name">nbReadOut</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt id="link-50" class=" [...]
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-52" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-52', 'dim2', 'link-25');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class= [...]
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt id="link-54" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-54', 'len', 'link-7');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">block</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt id="link-55" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" o [...]
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> \ </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-string">'Size spec in kcd-header does not match size of image data field'</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-59', 'bytecode', 'link-27');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-60', 'data', 'link-44');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">type</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-61', 'resetvals', 'link-20');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-comment"># ensure the PIL image is reset</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="kcdimage.checkData"></a><div id="kcdimage.checkData-def"><a name="L127"></a><tt class="py-lineno">127</tt> <a class="py-toggle" href="#" id="kcdimage.checkData-toggle" onclick="return toggle('kcdimage.checkData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.kcdimage.kcdimage-class.html#checkData">checkData</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="p [...]
-</div><div id="kcdimage.checkData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="kcdimage.checkData-expanded"><a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-62" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-62', 'data', 'link-44');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-63" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-63', 'data', 'link-44');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
- </td>
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-</table>
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- <!--
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- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.kcdimage.kcdimage-class.html b/doc/html/fabio.kcdimage.kcdimage-class.html
deleted file mode 100644
index f946223..0000000
--- a/doc/html/fabio.kcdimage.kcdimage-class.html
+++ /dev/null
@@ -1,411 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.kcdimage.kcdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.kcdimage-module.html">Module kcdimage</a> ::
- Class kcdimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.kcdimage.kcdimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class kcdimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.kcdimage-pysrc.html#kcdimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">kcdimage</strong>
-</pre>
-
-<hr />
-<p>Read the Nonius kcd data format</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.kcdimage.kcdimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Read in a header in some KCD format from an already open file @</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.kcdimage-pysrc.html#kcdimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.kcdimage.kcdimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read in header into self.header and...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.kcdimage-pysrc.html#kcdimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#write">write</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.kcdimage.kcdimage-class.html#checkData" class="summary-sig-name">checkData</a>(<span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.kcdimage-pysrc.html#kcdimage.checkData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.kcdimage-pysrc.html#kcdimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read in a header in some KCD format from an already open file @</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.kcdimage-pysrc.html#kcdimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <pre class="literalblock">
-
-Read in header into self.header and
- the data into self.data
-
-</pre>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="checkData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">checkData</span>(<span class="sig-arg">data</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.kcdimage-pysrc.html#kcdimage.checkData">source code</a></span>
- </td>
- </tr></table>
-
- <p>Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#checkData">fabioimage.fabioimage.checkData</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.mar345_IO-module.html b/doc/html/fabio.mar345_IO-module.html
deleted file mode 100644
index 087b477..0000000
--- a/doc/html/fabio.mar345_IO-module.html
+++ /dev/null
@@ -1,165 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.mar345_IO</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module mar345_IO
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.mar345_IO-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module mar345_IO</h1><p class="nomargin-top"></p>
-<pre class="literalblock">
-
-New Cython version of mar345_io for preparing the migration to Python3
-
-Compressor & decompressor for "pack" algorithm by JPA, binding to CCP4 libraries
-
-Warning: decompressor is just a cython porting of mar345_io, but in cython so (soon) python3 compliant.
-
-Future: make those algorithm actually generate strings not go via files;
- it will allow a broader use of the algorithm.
-
-</pre>
-
-<hr />
-<div class="fields"> <dl><dt>Authors:</dt>
- <dd>
- Jerome Kieffer,
- Gael Goret
- </dd>
- </dl>
- <p><strong>Contact:</strong>
- jerome.kieffer at esrf.eu
- </p>
- <p><strong>Copyright:</strong>
- 2012, European Synchrotron Radiation Facility, Grenoble, France
- </p>
- <p><strong>License:</strong>
- LGPLv3+
- </p>
-</div><!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__test__"></a><span class="summary-name">__test__</span> = <code title="{}"><code class="variable-group">{</code><code class="variable-group">}</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.mar345image-module.html b/doc/html/fabio.mar345image-module.html
deleted file mode 100644
index 1b68efb..0000000
--- a/doc/html/fabio.mar345image-module.html
+++ /dev/null
@@ -1,235 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.mar345image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module mar345image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.mar345image-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module mar345image</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.mar345image-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:erik.knudsen at risoe.dk
- +
- Jon Wright, Jerome Kieffer, Gael Goret ESRF, France
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.mar345image.mar345image-class.html" class="summary-name">mar345image</a>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.mar345image-module.html#__doc__" class="summary-name">__doc__</a> = <code title=""""
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dim\
-ensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
-..."><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("mar345image")">logging.getLogger("mar345image")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__doc__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">__doc__</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-"""
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dim<span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-ensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
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- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
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-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.mar345image-pysrc.html b/doc/html/fabio.mar345image-pysrc.html
deleted file mode 100644
index 8c730c7..0000000
--- a/doc/html/fabio.mar345image-pysrc.html
+++ /dev/null
@@ -1,784 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.mar345image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module mar345image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.mar345image-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.mar345image-module.html">Module fabio.mar345image</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8 </tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt class="py-name">__future__</tt> <tt class="py-keyword">import</tt> <tt class="py-name">with_statement</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.OXDimage.__doc__=fabio.OXDimage-module.html#__doc__,Variable fabio.binaryimage.__doc__=fabio.binaryimage-module.html#__doc__,Variable fabio.mar345image.__doc__=fabio.mar345image-module.html#__doc__"><a title="fabio.OXDimage.__doc__
-fabio.binaryimage.__doc__
-fabio.mar345image.__doc__" class="py-name" href="#" onclick="return doclink('link-0', '__doc__', 'link-0');">__doc__</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"""</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-string">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-string"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-string"> Risoe National Laboratory</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-string"> Frederiksborgvej 399</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-string"> DK-4000 Roskilde</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-string"> email:erik.knudsen at risoe.dk</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-string"> +</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-string"> Jon Wright, Jerome Kieffer, Gael Goret ESRF, France</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt><tt class="py-op">,</tt> <tt class="py-name">struct</tt><tt class="py-op">,</tt> <tt class="py-name">time</tt><tt class="py-op">,</tt> <tt class="py-name">sys</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt id="link-3" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-3', 'logger', 'link-3');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"mar345image"</tt><tt class="py-op">)</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-4" class="py-name" targets="Module fabio.compression=fabio.compression-module.html"><a title="fabio.compression" class="py-name" href="#" onclick="return doclink('link-4', 'compression', 'link-4');">compression</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name" targets="Function fabio.compression.compPCK()=fabio.compression-module.html#compPCK"><a t [...]
-<a name="mar345image"></a><div id="mar345image-def"><a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <a class="py-toggle" href="#" id="mar345image-toggle" onclick="return toggle('mar345image');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html">mar345image</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="mar345image-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="mar345image-expanded"><a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> <tt id="link-7" class="py-name" targets="Variable fabio.fabioimage.fabioimage._need_a_real_file=fabio.fabioimage.fabioimage-class.html#_need_a_real_file,Variable fabio.mar345image.mar345image._need_a_real_file=fabio.mar345image.mar345image-class.html#_need_a_real_file"><a title="fabio.fabioimage. [...]
-fabio.mar345image.mar345image._need_a_real_file" class="py-name" href="#" onclick="return doclink('link-7', '_need_a_real_file', 'link-7');">_need_a_real_file</a></tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="mar345image.__init__"></a><div id="mar345image.__init__-def"><a name="L24"></a><tt class="py-lineno"> 24</tt> <a class="py-toggle" href="#" id="mar345image.__init__-toggle" onclick="return toggle('mar345image.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt c [...]
-</div><div id="mar345image.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="mar345image.__init__-expanded"><a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt id="link-8" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-8', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage.__ini [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-9', '__init__', 'link-9');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-name">args</tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">kwargs</tt><tt class="py-op">)</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numhigh</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numpixels</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> </tt>
-<a name="mar345image.read"></a><div id="mar345image.read-def"><a name="L29"></a><tt class="py-lineno"> 29</tt> <a class="py-toggle" href="#" id="mar345image.read-toggle" onclick="return toggle('mar345image.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</t [...]
-</div><div id="mar345image.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="mar345image.read-expanded"><a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-docstring">""" Read a mar345 image"""</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-name">f</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-10', '_open', 'link-10');">_open</a></tt><tt class="py-op">(</tt><tt class="py [...]
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._rea [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-11', '_readheader', 'link-11');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">)</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-string">'compressed'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-12', 'header', 'link-12');">header</a [...]
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-13', 'data', 'link-13');">data</a></tt> <tt class="py-op">=</tt> <tt id="link-14" class="py-name"><a title="fabio.compression.decPCK" class="py-name" href="#" onclick="return doclink('link-14', 'decPCK', 'link-6');">decPCK</a></tt><tt class="py-op">(</tt><tt class="py-name">f</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Variab [...]
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt id="link-17" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-17', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">'%s. importing the mar345_io backend: generate an empty 1x1 picture'</tt> <tt class="py-op">%</tt> <tt class="py-name">error</tt><tt class="py-op">)</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-18', 'dim1', 'link-15');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-19', 'dim2', 'link-16');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-20', 'bytecode', 'link-20');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</t [...]
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-21" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-21', 'data', 'link-13');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">resize</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">nump [...]
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt id="link-22" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-22', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"cannot handle these formats yet "</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-string">"due to lack of documentation"</tt><tt class="py-op">)</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-23', 'bytecode', 'link-20');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> </tt>
-<a name="mar345image._readheader"></a><div id="mar345image._readheader-def"><a name="L54"></a><tt class="py-lineno"> 54</tt> <a class="py-toggle" href="#" id="mar345image._readheader-toggle" onclick="return toggle('mar345image._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class=" [...]
-</div><div id="mar345image._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="mar345image._readheader-expanded"><a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-docstring">""" Read a mar345 image header """</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-comment"># clip was not used anywhere - commented out</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-comment"># clip = '\x00'</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-comment">#using a couple of local variables inside this function</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-name">f</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">h</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-comment">#header is 4096 bytes long</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDima [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-24', 'read', 'link-24');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">64</tt><tt class="py-op">)</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-comment">#the contents of the mar345 header is taken to be as</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-comment"># described in</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-comment"># http://www.mar-usa.com/support/downloads/mar345_formats.pdf</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-comment">#the first 64 bytes are 4-byte integers (but in the CBFlib</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-comment"># example image it seems to 128 bytes?)</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-comment">#first 4-byte integer is a marker to check endianness</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name" targets="Method fabio.edfimage.edfimage.unpack()=fabio.edfimage.edfimage-class.html#unpack,Method fabio.tifimage.Image_File_Directory.unpack()=fabio.tifimage.Image_File_Directory-class.html#unpack,Method fabio.tifimage.Image_File_Directory_entry.unpack()=fabio.tifimage.Image_File_Directory_entr [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-25', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-string">"<i"</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">:</tt><tt class="py-number">4</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt cl [...]
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-name">fs</tt> <tt class="py-op">=</tt> <tt class="py-string">'<i'</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-name">fs</tt> <tt class="py-op">=</tt> <tt class="py-string">'>i'</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-comment">#image dimensions</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-26', 'dim1', 'link-15');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return d [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-28', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-number">8</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py- [...]
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-comment">#number of high intensity pixels</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numhigh</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-29', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">2</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt> <tt class="py-op">:</tt> <tt class="py-op">(</tt><tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt [...]
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'NumHigh'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numhigh</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt class="py-comment">#Image format</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt id="link-30" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-30', 'i', 'link-30');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-31', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">3</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt> <tt class="py-op">:</tt> <tt class="py-op">(</tt><tt class="py-number">3</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt [...]
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-32" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-32', 'i', 'link-30');">i</a></tt> <tt class="py-op">==</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'Format'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">'compressed'</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt id="link-33" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-33', 'i', 'link-30');">i</a></tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'Format'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">'spiral'</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'Format'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-string">'compressed'</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt id="link-34" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-34', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"image format could not be detetermined"</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-string">"- assuming compressed mar345"</tt><tt class="py-op">)</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-comment">#collection mode</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'Mode'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-number">0</tt><tt class="py-op">:</tt><tt class="py-string">'Dose'</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">:</tt> <tt class="py-string">'Time'</tt><tt class="py-op">}</tt><tt class="py-op">[</tt><tt class="py [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-35', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">4</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-number">4</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt cl [...]
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-comment">#total number of pixels</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numpixels</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-36', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">5</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-number">5</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt cl [...]
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'NumPixels'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-37" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-37', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">numpixels</tt><tt class="py-op">)</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-comment">#pixel dimensions (length,height) in mm</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'PixelLength'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-38', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">6</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-number">6</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt cl [...]
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'PixelHeight'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-39', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">7</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-number">7</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt cl [...]
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-comment">#x-ray wavelength in AA</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'Wavelength'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-40', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">8</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-number">8</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt cl [...]
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-comment">#used distance</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'Distance'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-41', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">9</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">(</tt><tt class="py-number">9</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt cl [...]
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-comment">#starting and ending phi</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'StartPhi'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-42', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">10</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-number">11</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">]</tt><tt [...]
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'EndPhi'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-43', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">11</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-number">12</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">]</tt><tt [...]
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-comment">#starting and ending omega</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'StartOmega'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-44', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">12</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-number">13</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">]</tt><tt [...]
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'EndOmega'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-45', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">13</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-number">14</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">]</tt><tt [...]
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-comment">#Chi and Twotheta angles</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'Chi'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-46', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">14</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-number">15</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">]</tt><tt [...]
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'TwoTheta'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-47', 'unpack', 'link-25');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fs</tt><tt class="py-op">,</tt> <tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">15</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-number">16</tt> <tt class="py-op">*</tt> <tt class="py-number">4</tt><tt class="py-op">]</tt><tt [...]
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-comment">#the rest of the header is ascii</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-comment"># TODO: validate these values against the binaries already read</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-48', 'read', 'link-24');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">128</tt><tt class="py-op">)</tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-string">'mar research'</tt> <tt class="py-keyword">in</tt> <tt class="py-name">l</tt><tt class="py-op">:</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt id="link-49" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-49', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"the string \"mar research\" should be in "</tt> <tt class="py-op">+</tt> \ </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-string">"bytes 65-76 of the header but was not"</tt><tt class="py-op">)</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-number">128</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">start</tt> <tt class="py-op">=</tt> <tt class="py-name">l</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt class="py-string">'mar research'</tt><tt class="py-op">)</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">64</tt> <tt class="py-op">+</tt> <tt class="py-name">start</tt><tt class="py-op">)</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-50', 'read', 'link-24');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">4096</tt> <tt class="py-op">-</tt> <tt class="py-name">start</tt> <tt class="py-op">-</tt> <tt class="py-number">64</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">m</tt> <tt class="py-keyword">in</tt> <tt class="py-name">l</tt><tt class="py-op">.</tt><tt class="py-name">splitlines</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">m</tt> <tt class="py-op">==</tt> <tt class="py-string">'END OF HEADER'</tt><tt class="py-op">:</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-keyword">break</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">' '</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">''</tt><tt class="py-op">:</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">'PROGRAM'</tt><tt class="py-op">,</tt> <tt class="py-string">'DATE'</tt><tt class="py-op">,</tt> <tt class="py-string">'SCANNER'</tt><tt class="py-op">,</tt> <tt class="py-string">'HIGH'</tt><tt cla [...]
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-string">'GAIN'</tt><tt class="py-op">,</tt> <tt class="py-string">'WAVELENGTH'</tt><tt class="py-op">,</tt> <tt class="py-string">'DISTANCE'</tt><tt class="py-op">,</tt> <tt class="py-string">'RESOLUTION'</tt><tt class="py-op">,</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-string">'CHI'</tt><tt class="py-op">,</tt> <tt class="py-string">'TWOTHETA'</tt><tt class="py-op">,</tt> <tt class="py-string">'MODE'</tt><tt class="py-op">,</tt> <tt class="py-string">'TIME'</tt><tt class="py-op">,</tt> <tt class="py-string">'GENERATOR'</tt><tt class="py-op">,</tt> </tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-string">'MONOCHROMATOR'</tt><tt class="py-op">,</tt> <tt class="py-string">'REMARK'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt id="link-51" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-51', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"reading: %s %s"</tt><tt class="py-op">,</tt> <tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</ [...]
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">'FORMAT'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'DIM'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'FORMAT_TYPE'</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">h</tt><tt class="py-op">[</tt><tt class="py-string">'NO_PIXELS'</tt><tt class="py-op">]</tt [...]
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-keyword">in</tt> <tt class="py-op">(</tt><tt class="py-string">'PIXEL'</tt><tt class="py-op">,</tt> <tt class="py-string">'OFFSET'</tt><tt class="py-op">,</tt> <tt class="py-string">'PHI'</tt><tt class="py-op">,</tt> <tt class="py-string">'OMEGA'</tt><tt class= [...]
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-string">'CENTER'</tt><tt class="py-op">,</tt> <tt class="py-string">'INTENSITY'</tt><tt class="py-op">,</tt> <tt class="py-string">'HISTOGRAM'</tt><tt class="py-op">,</tt> <tt class="py-string">'COLLIMATOR'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-name">n</tt> <tt class="py-op">=</tt> <tt class="py-name">m</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt class="py-name">h</tt><tt class="py-op">.</tt><tt class="py-name">update</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-op">(</tt><tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-string">'_'</tt> <tt class="py-op">+</tt> <tt class="py-name">n</tt><tt class="py-op">[</tt><tt class="py-name [...]
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-53', 'header', 'link-12');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">h</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">h</tt> </tt>
-</div><a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> </tt>
-<a name="mar345image.write"></a><div id="mar345image.write-def"><a name="L147"></a><tt class="py-lineno">147</tt> <a class="py-toggle" href="#" id="mar345image.write-toggle" onclick="return toggle('mar345image.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-o [...]
-</div><div id="mar345image.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="mar345image.write-expanded"><a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-docstring">"""Try to write mar345 file. This is still in beta version.</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"><tt class="py-docstring"> It uses CCP4 (LGPL) PCK1 algo from JPA"""</tt> </tt>
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-name">outfile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-54', '_open', 'link-10');">_open</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op [...]
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-55" class="py-name" targets="Method fabio.GEimage.GEimage.write()=fabio.GEimage.GEimage-class.html#write,Method fabio.OXDimage.OXDimage.write()=fabio.OXDimage.OXDimage-class.html#write,Method fabio.adscimage.adscimage.write()=fabio.adscimage.adscimage-class.html#write,Method fabio.binaryimage.binaryimage.write()=fabio.binaryimage.binaryim [...]
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-55', 'write', 'link-55');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name" targets="Method fabio.OXDimage.OXDimage._writeheader()=fabio.OXDimage.OXDimage-class.html#_writeheader,Method fabio.mar345image.mar345image._writeheader()=fabio.mar345image.mar345image-class.html#_writeheader"><a title="fabio.OXDimage.OXDimage._writeheader
-fabio.mar345image.mar345image._writeheader" class="py-name" href="#" onclick="return doclink('link-56', '_writeheader', 'link-56');">_writeheader</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-57', 'write', 'link-55');">write</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name" targets="Method fabio.mar345image.mar345image._high_intensity_pixel_records()=fabio.mar345image.mar345image-class.html#_high_intensity_pixel_records"><a title="fabio.mar345image.mar345image._high_intensity_pixel_records" class="py-name" href="#" onclick=" [...]
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.GEimage.GEimage.write
-fabio.OXDimage.OXDimage.write
-fabio.adscimage.adscimage.write
-fabio.binaryimage.binaryimage.write
-fabio.brukerimage.brukerimage.write
-fabio.cbfimage.cbfimage.write
-fabio.edfimage.edfimage.write
-fabio.fabioimage.fabioimage.write
-fabio.fit2dmaskimage.fit2dmaskimage.write
-fabio.mar345image.mar345image.write
-fabio.pnmimage.pnmimage.write
-fabio.tifimage.tifimage.write" class="py-name" href="#" onclick="return doclink('link-59', 'write', 'link-55');">write</a></tt><tt class="py-op">(</tt><tt id="link-60" class="py-name"><a title="fabio.compression.compPCK" class="py-name" href="#" onclick="return doclink('link-60', 'compPCK', 'link-5');">compPCK</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-61', 'data', 'link-13');">data</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-name">outfile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt id="link-62" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-62', 'logger', 'link-3');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Error in writing file %s: %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> </tt>
-<a name="mar345image._writeheader"></a><div id="mar345image._writeheader-def"><a name="L159"></a><tt class="py-lineno">159</tt> <a class="py-toggle" href="#" id="mar345image._writeheader-toggle" onclick="return toggle('mar345image._writeheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html#_writeheader">_writeheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt [...]
-</div><a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"><tt class="py-docstring"> @param linesep: end of line separator</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"><tt class="py-docstring"> @return string/bytes containing the mar345 header</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt id="link-63" class="py-name" targets="Variable fabio.version=fabio-module.html#version"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-63', 'version', 'link-63');">version</a></tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">modules</tt><tt class="py-op">[</tt><tt class="py-string">"fabio"</tt><tt class="py-op">]</tt> [...]
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-op">(</tt><tt class="py-name">KeyError</tt><tt class="py-op">,</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"> <tt id="link-65" class="py-name"><a title="fabio.version" class="py-name" href="#" onclick="return doclink('link-65', 'version', 'link-63');">version</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"0.0.9"</tt> </tt>
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"> <tt class="py-name">lnsep</tt> <tt class="py-op">=</tt> <tt id="link-66" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-66', 'len', 'link-52');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">linesep</tt><tt class="py-op">)</tt> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> </tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-67', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">"HIGH"</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-68" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-68', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-69" class="py-name" targets="Method fabio.mar345image.mar345image.nb_overflow_pixels()=fabio.mar345image.mar345image-class.html#nb_overflow_pixels"><a title="fabio.mar345image.mar345image.nb_overflow_pixels" class="py-name" href="#" onclick="return doclink('link-69', 'nb_overflow_pixels', 'link-69');">nb [...]
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> <tt class="py-name">binheader</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-number">16</tt><tt class="py-op">,</tt> <tt class="py-string">"int32"</tt><tt class="py-op">)</tt> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-number">1234</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link [...]
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-72', 'header', 'link-12');">header</a></tt><tt class="py-op">.</tt><tt [...]
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">5</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-73" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-73', 'dim1', 'link-15');">dim1</a></tt> <tt class="py-op">*</tt> <tt class="py-name">self</tt><t [...]
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">6</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-75', 'header', 'link-12');">header</a></tt [...]
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">7</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-76" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-76', 'header', 'link-12');">header</a></tt [...]
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">8</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return do [...]
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">9</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-78" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return do [...]
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">10</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return d [...]
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">11</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-80" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return d [...]
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">12</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-81" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return d [...]
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">13</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-82" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return d [...]
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">14</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-83" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return d [...]
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-name">binheader</tt><tt class="py-op">[</tt><tt class="py-number">15</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return d [...]
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-name">lstout</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">binheader</tt><tt class="py-op">.</tt><tt id="link-85" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,Method fabio.fabioutils.filename_object.tostring()=fabio.fabioutils.filename_object-class.html#tostring"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-85', 'tostring', 'link-85');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">'mar research'</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">64</tt> <tt class="py-op">-</tt> <tt class="py-name">lnsep</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"PROGRAM"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt id="link-86" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-86', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-87', 'header', 'link-12');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">"PROGRAM"</tt><tt class="py-op">,</tt> <tt clas [...]
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"DATE"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt id="link-89" class="py-name"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-89', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-90" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-90', 'header', 'link-12');">header</a></tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">"DATE"</tt><tt class="py-op">,</tt> <tt class=" [...]
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt id="link-91" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-91', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"SCANNER"</tt> </tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-92" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-92', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-93" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-93', 'head [...]
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-94" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-94', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class= [...]
-str" class="py-name" href="#" onclick="return doclink('link-95', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-96" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-96', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-97" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-9 [...]
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt id="link-98" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-98', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"FORMAT_TYPE"</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-99" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-99', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-100" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-100', 'he [...]
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"FORMAT"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"%s %s %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">( [...]
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt id="link-106" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-106', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"HIGH"</tt> </tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-107" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-107', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-108" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-108', ' [...]
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-109" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-109', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-110', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-111" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-111', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-112" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"PIXEL_LENGTH"</tt> </tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"PIXEL_HEIGHT"</tt> </tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-113" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-113', 'header', 'link-12');">header</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="p [...]
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"PIXEL"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"LENGTH %s HEIGHT %s"</tt> <tt class="py-op">%</tt> <tt class [...]
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"OFFSET_ROFF"</tt> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"OFFSET_TOFF"</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-117" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-117', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">key2</tt> <tt class="py-keyword">in</tt> [...]
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"OFFSET"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"ROFF %s TOFF %s"</tt> <tt class="py-op">%</tt> <tt class="p [...]
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt id="link-121" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-121', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"MULTIPLIER"</tt> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-122" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-122', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-123" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-123', ' [...]
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-124" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-124', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-125', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-126" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-126', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-127" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt id="link-128" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-128', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"GAIN"</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-129" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-129', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-130" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-130', ' [...]
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-131" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-131', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-132', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-133" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-133', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-134" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt id="link-135" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-135', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"WAVELENGTH"</tt> </tt>
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-136" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-136', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-137" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-137', ' [...]
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-138" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-138', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-139', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-140" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-140', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-141" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt id="link-142" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-142', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"DISTANCE"</tt> </tt>
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-143" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-143', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-144" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-144', ' [...]
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-145" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-145', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-146', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-147" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-147', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-148" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt id="link-149" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-149', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"RESOLUTION"</tt> </tt>
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-150" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-150', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-151" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-151', ' [...]
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-152" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-152', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-153', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-154" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-154', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-155" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"PHI_START"</tt> </tt>
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"PHI_END"</tt> </tt>
-<a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> <tt class="py-name">key3</tt> <tt class="py-op">=</tt> <tt class="py-string">"PHI_OSC"</tt> </tt>
-<a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-156" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-156', 'header', 'link-12');">header</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="p [...]
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"PHI"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"START %s END %s OSC %s"</tt> <tt class="py-op">%</tt> <tt cla [...]
-<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"OMEGA_START"</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"OMEGA_END"</tt> </tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-name">key3</tt> <tt class="py-op">=</tt> <tt class="py-string">"OMEGA_OSC"</tt> </tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-162" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-162', 'header', 'link-12');">header</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="p [...]
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"OMEGA"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"START %s END %s OSC %s"</tt> <tt class="py-op">%</tt> <tt c [...]
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt id="link-168" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-168', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"CHI"</tt> </tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-169" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-169', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-170" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-170', ' [...]
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-171" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-171', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-172', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-173" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-173', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-174" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt id="link-175" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-175', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"TWOTHETA"</tt> </tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-176" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-176', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-177" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-177', ' [...]
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-178" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-178', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-179', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-180" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-180', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-181" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"CENTER_X"</tt> </tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"CENTER_Y"</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-182" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-182', 'header', 'link-12');">header</a></tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="p [...]
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"CENTER"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"X %s Y %s"</tt> <tt class="py-op">%</tt> <tt class="py-op"> [...]
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt id="link-186" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-186', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"MODE"</tt> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-187" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-187', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-188" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-188', ' [...]
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-189" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-189', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-190', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-191" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-191', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-192" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt id="link-193" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-193', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"TIME"</tt> </tt>
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-194" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-194', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-195" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-195', ' [...]
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-196" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-196', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-197', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-198" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-198', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-199" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"COUNTS_START"</tt> </tt>
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"COUNTS_END"</tt> </tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-name">key3</tt> <tt class="py-op">=</tt> <tt class="py-string">"COUNTS_NMEAS"</tt> </tt>
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-200" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-200', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">key2</tt> <tt class="py-keyword">in</tt> [...]
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"COUNTS"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"START %s END %s NMEAS %s"</tt> <tt class="py-op">%</tt> <t [...]
-<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"COUNTS_MIN"</tt> </tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"COUNTS_MAX"</tt> </tt>
-<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-206" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-206', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">key2</tt> <tt class="py-keyword">in</tt> [...]
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"COUNTS"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"MIN %s MAX %s"</tt> <tt class="py-op">%</tt> <tt class="py- [...]
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"COUNTS_AVE"</tt> </tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"COUNTS_SIG"</tt> </tt>
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-210" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-210', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">key2</tt> <tt class="py-keyword">in</tt> [...]
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"COUNTS"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"AVE %s SIG %s"</tt> <tt class="py-op">%</tt> <tt class="py- [...]
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"INTENSITY_MIN"</tt> </tt>
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"INTENSITY_MAX"</tt> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-name">key3</tt> <tt class="py-op">=</tt> <tt class="py-string">"INTENSITY_AVE"</tt> </tt>
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-name">key4</tt> <tt class="py-op">=</tt> <tt class="py-string">"INTENSITY_SIG"</tt> </tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-214" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-214', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">key2</tt> <tt class="py-keyword">in</tt> [...]
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"INTENSITY"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"MIN %s MAX %s AVE %s SIG %s"</tt> <tt class="py-op">%< [...]
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"HISTOGRAM_START"</tt> </tt>
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"HISTOGRAM_END"</tt> </tt>
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">key3</tt> <tt class="py-op">=</tt> <tt class="py-string">"HISTOGRAM_MAX"</tt> </tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-222" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-222', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">key2</tt> <tt class="py-keyword">in</tt> [...]
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"HISTOGRAM"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"START %s END %s MAX %s"</tt> <tt class="py-op">%</tt> < [...]
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt id="link-228" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-228', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"GENERATOR"</tt> </tt>
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-229" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-229', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-230" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-230', ' [...]
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-231" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-231', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-232', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-233" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-233', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-234" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt id="link-235" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-235', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"MONOCHROMATOR"</tt> </tt>
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-236" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-236', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-237" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-237', ' [...]
-<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-238" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-238', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-239', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-240" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-240', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-241" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-name">key1</tt> <tt class="py-op">=</tt> <tt class="py-string">"COLLIMATOR_WIDTH"</tt> </tt>
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-name">key2</tt> <tt class="py-op">=</tt> <tt class="py-string">"COLLIMATOR_HEIGHT"</tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">key1</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-242" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-242', 'header', 'link-12');">header</a></tt> <tt class="py-keyword">and</tt> <tt class="py-name">key2</tt> <tt class="py-keyword">in</tt> [...]
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-string">"COLLIMATOR"</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-op">(</tt><tt class="py-string">"WIDTH %s HEIGHT %s"</tt> <tt class="py-op">%</tt> <tt c [...]
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt id="link-246" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-246', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"REMARK"</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-247" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-247', 'key', 'link-91');">key</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-248" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-248', ' [...]
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-249" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-249', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">15</tt><tt class="py-op">)</tt> <tt clas [...]
-str" class="py-name" href="#" onclick="return doclink('link-250', 'str', 'link-37');">str</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-251" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-251', 'header', 'link-12');">header</a></tt><tt class="py-op">[</tt><tt id="link-252" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('li [...]
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-253" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-253', 'key', 'link-91');">key</a></tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-number">64</tt> <tt class="py-op">-</tt> <tt cla [...]
-<a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> <tt id="link-254" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-254', 'key', 'link-91');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"END OF HEADER"</tt> </tt>
-<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> <tt class="py-name">lstout</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-255" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-255', 'key', 'link-91');">key</a></tt><tt class="py-op">)</tt> </tt>
-<a name="L287"></a><tt class="py-lineno">287</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">linesep</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">lstout</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">ljust</tt><tt class="py-op">(</tt><tt class="py-name">size</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> </tt>
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"> </tt>
-<a name="mar345image._high_intensity_pixel_records"></a><div id="mar345image._high_intensity_pixel_records-def"><a name="L290"></a><tt class="py-lineno">290</tt> <a class="py-toggle" href="#" id="mar345image._high_intensity_pixel_records-toggle" onclick="return toggle('mar345image._high_intensity_pixel_records');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html#_high_intensity_pixel_records">_high_intensit [...]
-</div><div id="mar345image._high_intensity_pixel_records-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="mar345image._high_intensity_pixel_records-expanded"><a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> <tt class="py-name">flt_data</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-256" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-256', 'data', 'link-13');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">flatten</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L292"></a><tt class="py-lineno">292</tt> <tt class="py-line"> <tt class="py-name">pix_location</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">where</tt><tt class="py-op">(</tt><tt class="py-name">flt_data</tt> <tt class="py-op">></tt> <tt class="py-number">65535</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> </tt>
-<a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-name">nb_pix</tt> <tt class="py-op">=</tt> <tt class="py-name">pix_location</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> </tt>
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">nb_pix</tt> <tt class="py-op">%</tt> <tt class="py-number">8</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"> <tt class="py-name">tmp</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">nb_pix</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-string">"int32"</tt><t [...]
-<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-name">tmp</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">nb_pix</tt> <tt class="py-op">//</tt> <tt class="py-number">8</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> <tt class="py-op">*</tt> <tt class [...]
-<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt class="py-name">tmp</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">nb_pix</tt><tt class="py-op">,</tt> <tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">pix_location</tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> <tt class="py-name">tmp</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">nb_pix</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">flt_data</tt><tt class="py-op">[</tt><tt class="py-name">pix_location</tt><tt class="py-op">]</tt> </tt>
-<a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">tmp</tt><tt class="py-op">.</tt><tt id="link-257" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-257', 'tostring', 'link-85');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> </tt>
-<a name="mar345image.nb_overflow_pixels"></a><div id="mar345image.nb_overflow_pixels-def"><a name="L302"></a><tt class="py-lineno">302</tt> <a class="py-toggle" href="#" id="mar345image.nb_overflow_pixels-toggle" onclick="return toggle('mar345image.nb_overflow_pixels');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html#nb_overflow_pixels">nb_overflow_pixels</a><tt class="py-op">(</tt><tt class="py-param">se [...]
-</div><div id="mar345image.nb_overflow_pixels-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="mar345image.nb_overflow_pixels-expanded"><a name="L303"></a><tt class="py-lineno">303</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-258" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-258', 'data', 'link-13');">data</a></tt> <tt class="py-op">></tt> <tt class="py-number">65535</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">sum</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> </tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="mar345image.checkData"></a><div id="mar345image.checkData-def"><a name="L306"></a><tt class="py-lineno">306</tt> <a class="py-toggle" href="#" id="mar345image.checkData-toggle" onclick="return toggle('mar345image.checkData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.mar345image.mar345image-class.html#checkData">checkData</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">=</tt><tt class="py-name">Non [...]
-</div><div id="mar345image.checkData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="mar345image.checkData-expanded"><a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-259" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-259', 'data', 'link-13');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"><tt class="py-comment"># enforce square image </tt> </tt>
-<a name="L311"></a><tt class="py-lineno">311</tt> <tt class="py-line"> <tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt id="link-260" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-260', 'data', 'link-13');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L312"></a><tt class="py-lineno">312</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt id="link-261" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-261', 'len', 'link-52');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">,</tt> <tt class="py-string">"image has 2 dimension [...]
-<a name="L313"></a><tt class="py-lineno">313</tt> <tt class="py-line"> <tt class="py-name">mshape</tt> <tt class="py-op">=</tt> <tt class="py-name">max</tt><tt class="py-op">(</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
-<a name="L314"></a><tt class="py-lineno">314</tt> <tt class="py-line"> <tt class="py-name">z</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">mshape</tt><tt class="py-op">,</tt> <tt class="py-name">mshape</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">int</tt><tt cla [...]
-<a name="L315"></a><tt class="py-lineno">315</tt> <tt class="py-line"> <tt class="py-name">z</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">shape</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-name">shape</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt id="link-262" class= [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-262', 'data', 'link-13');">data</a></tt> </tt>
-<a name="L316"></a><tt class="py-lineno">316</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">z</tt> </tt>
-</div></div><a name="L317"></a><tt class="py-lineno">317</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:28 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.mar345image.mar345image-class.html b/doc/html/fabio.mar345image.mar345image-class.html
deleted file mode 100644
index df40d8e..0000000
--- a/doc/html/fabio.mar345image.mar345image-class.html
+++ /dev/null
@@ -1,571 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.mar345image.mar345image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.mar345image-module.html">Module mar345image</a> ::
- Class mar345image
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.mar345image.mar345image-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class mar345image</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">mar345image</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.mar345image.mar345image-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">*args</span>,
- <span class="summary-sig-arg">**kwargs</span>)</span><br />
- Set up initial values</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.mar345image.mar345image-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read a mar345 image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.mar345image.mar345image-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>=<span class="summary-sig-default">None</span>)</span><br />
- Read a mar345 image header</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.mar345image.mar345image-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- Try to write mar345 file.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.mar345image.mar345image-class.html#_writeheader" class="summary-sig-name" onclick="show_private();">_writeheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">linesep</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">\n</code><code class="variable-quote">'</code></span>,
- <span class="summary-sig-arg">size</span>=<span class="summary-sig-default">4096</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image._writeheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_high_intensity_pixel_records"></a><span class="summary-sig-name">_high_intensity_pixel_records</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image._high_intensity_pixel_records">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="nb_overflow_pixels"></a><span class="summary-sig-name">nb_overflow_pixels</span>(<span class="summary-sig-arg">self</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.nb_overflow_pixels">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.mar345image.mar345image-class.html#checkData" class="summary-sig-name">checkData</a>(<span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.checkData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="_need_a_real_file"></a><span class="summary-name">_need_a_real_file</span> = <code title="True">True</code>
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">*args</span>,
- <span class="sig-arg">**kwargs</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Set up initial values</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read a mar345 image</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read a mar345 image header</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>Try to write mar345 file. This is still in beta version. It uses CCP4
- (LGPL) PCK1 algo from JPA</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_writeheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_writeheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">linesep</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">\n</code><code class="variable-quote">'</code></span>,
- <span class="sig-arg">size</span>=<span class="sig-default">4096</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image._writeheader">source code</a></span>
- </td>
- </tr></table>
-
-
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>linesep</code></strong> - end of line separator @return string/bytes containing the mar345
- header</li>
- </ul></dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="checkData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">checkData</span>(<span class="sig-arg">data</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.mar345image-pysrc.html#mar345image.checkData">source code</a></span>
- </td>
- </tr></table>
-
- <p>Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#checkData">fabioimage.fabioimage.checkData</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.marccdimage-module.html b/doc/html/fabio.marccdimage-module.html
deleted file mode 100644
index ff78ba7..0000000
--- a/doc/html/fabio.marccdimage-module.html
+++ /dev/null
@@ -1,416 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.marccdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
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-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module marccdimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.marccdimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module marccdimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.marccdimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:henning.sorensen at risoe.dk
-
- + (mods for fabio) Jon Wright, ESRF
-marccdimage can read MarCCD and MarMosaic images including header info.
-
-JPW : Use a parser in case of typos (sorry?)
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.marccdimage.marccdimage-class.html" class="summary-name">marccdimage</a><br />
- Read in data in mar ccd format, also MarMosaic images, including
- header info
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Functions</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="make_format"></a><span class="summary-sig-name">make_format</span>(<span class="summary-sig-arg">c_def_string</span>)</span><br />
- Reads the header definition in c and makes the format string to pass
- to struct.unpack</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.marccdimage-pysrc.html#make_format">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="interpret_header"></a><span class="summary-sig-name">interpret_header</span>(<span class="summary-sig-arg">header</span>,
- <span class="summary-sig-arg">fmt</span>,
- <span class="summary-sig-arg">names</span>)</span><br />
- given a format and header interpret it</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.marccdimage-pysrc.html#interpret_header">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("marccdimage")">logging.getLogger("marccdimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.marccdimage-module.html#CDEFINITION" class="summary-name">CDEFINITION</a> = <code title="'''
-typedef struct frame_header_type {
- /* File/header format parameters (256 bytes) */
- UINT32 header_type; /* flag for header type
- (can be used as magic numb\
-er) */
- char header_name[16]; /* header name (MMX) */
- UINT32 header_major_version; /* header_major_version\
-..."><code class="variable-quote">'</code><code class="variable-string">\ntypedef struct frame_header_type {\n </code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.marccdimage-module.html#C_TO_STRUCT" class="summary-name">C_TO_STRUCT</a> = <code title="{'INT32': 'i', 'UINT16': 'H', 'UINT32': 'I', 'char': 'c'}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">INT32</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">i</code><code class="variable-quote">'</code><code class="variable [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="C_SIZES"></a><span class="summary-name">C_SIZES</span> = <code title="{'INT32': 4, 'UINT16': 2, 'UINT32': 4, 'char': 1}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">INT32</code><code class="variable-quote">'</code><code class="variable-op">: </code>4<code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">UINT16</code><code class="variable-quote">'</code><code class=" [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="MAXIMAGES"></a><span class="summary-name">MAXIMAGES</span> = <code title="9">9</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.marccdimage-module.html#HEADER_FORMAT" class="summary-name">HEADER_FORMAT</a> = <code title="'IccccccccccccccccIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIccccccccccccc\
-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccIII\
-IIIIIIIIIIIIIIIIIIIccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH\
-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH\
-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii\
-iiiiicccccccccccccccciiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiccccccc\
-ccccccccciiiiiiiiiiccccccccccccccccccccccccccccccccccccccccccccccccccc\
-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc\
-..."><code class="variable-quote">'</code><code class="variable-string">IccccccccccccccccIIIIIIIIIIIIIIIIIIIIIIIIIIII</code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.marccdimage-module.html#HEADER_NAMES" class="summary-name">HEADER_NAMES</a> = <code title="['header_type',
- 'header_name[16]',
- 'header_name[16]',
- 'header_name[16]',
- 'header_name[16]',
- 'header_name[16]',
- 'header_name[16]',
- 'header_name[16]',
-..."><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">header_type</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">header_name[16]</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">header_name</code><code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="CDEFINITION"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">CDEFINITION</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-quote">'''</code><code class="variable-string"></code>
-<code class="variable-string">typedef struct frame_header_type {</code>
-<code class="variable-string"> /* File/header format parameters (256 bytes) */</code>
-<code class="variable-string"> UINT32 header_type; /* flag for header type </code>
-<code class="variable-string"> (can be used as magic numb</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">er) */</code>
-<code class="variable-string"> char header_name[16]; /* header name (MMX) */</code>
-<code class="variable-string"> UINT32 header_major_version; /* header_major_version</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="C_TO_STRUCT"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">C_TO_STRUCT</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">INT32</code><code class="variable-quote">'</code><code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">i</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">UINT16</code><code class="variable-quote">'</code><code class="variable-op">: </code><code [...]
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="HEADER_FORMAT"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">HEADER_FORMAT</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-quote">'</code><code class="variable-string">IccccccccccccccccIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIccccccccccccc</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccIII</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">IIIIIIIIIIIIIIIIIIIccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHH</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">iiiiicccccccccccccccciiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiccccccc</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">ccccccccciiiiiiiiiiccccccccccccccccccccccccccccccccccccccccccccccccccc</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-string">cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc</code><span class="variable-linewrap"><img src="crarr.png" alt="\" /></span>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="HEADER_NAMES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">HEADER_NAMES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">header_type</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">header_name[16]</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">header_name[16]</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">header_name[16]</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">header_name[16]</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">header_name[16]</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">header_name[16]</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">header_name[16]</code><code class="variable-quote">'</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- <a href="fabio-module.html">Package fabio</a> ::
- Module marccdimage
- </span>
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-<h1 class="epydoc">Source Code for <a href="fabio.marccdimage-module.html">Module fabio.marccdimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> email:henning.sorensen at risoe.dk</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"> + (mods for fabio) Jon Wright, ESRF</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring">marccdimage can read MarCCD and MarMosaic images including header info.</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring">JPW : Use a parser in case of typos (sorry?)</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-comment"># Base this on the tifimage (as marccd seems to be tiff with a </tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-comment"># special header </tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Module fabio.tifimage=fabio.tifimage-module.html,Class fabio.tifimage.tifimage=fabio.tifimage.tifimage-class.html"><a title="fabio.tifimage
-fabio.tifimage.tifimage" class="py-name" href="#" onclick="return doclink('link-0', 'tifimage', 'link-0');">tifimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-1" class="py-name"><a title="fabio.tifimage
-fabio.tifimage.tifimage" class="py-name" href="#" onclick="return doclink('link-1', 'tifimage', 'link-0');">tifimage</a></tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt id="link-2" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-2', 'logger', 'link-2');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"marccdimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-comment"># Now for the c definition (found on mar webpage)</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-comment"># The following string is therefore copyrighted by Mar I guess</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt id="link-3" class="py-name" targets="Variable fabio.marccdimage.CDEFINITION=fabio.marccdimage-module.html#CDEFINITION"><a title="fabio.marccdimage.CDEFINITION" class="py-name" href="#" onclick="return doclink('link-3', 'CDEFINITION', 'link-3');">CDEFINITION</a></tt> <tt class="py-op">=</tt> <tt class="py-string">"""</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-string">typedef struct frame_header_type {</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt class="py-string"> /* File/header format parameters (256 bytes) */</tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"><tt class="py-string"> UINT32 header_type; /* flag for header type </tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt class="py-string"> (can be used as magic number) */</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-string"> char header_name[16]; /* header name (MMX) */</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt class="py-string"> UINT32 header_major_version; /* header_major_version (n.) */</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"><tt class="py-string"> UINT32 header_minor_version; /* header_minor_version (.n) */</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt class="py-string"> UINT32 header_byte_order;/* BIG_ENDIAN (Motorola,MIPS); </tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"><tt class="py-string"> LITTLE_ENDIAN (DEC, Intel) */</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt class="py-string"> UINT32 data_byte_order; /* BIG_ENDIAN (Motorola,MIPS); </tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"><tt class="py-string"> LITTLE_ENDIAN (DEC, Intel) */</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"><tt class="py-string"> UINT32 header_size; /* in bytes */</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"><tt class="py-string"> UINT32 frame_type; /* flag for frame type */</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"><tt class="py-string"> UINT32 magic_number; /* to be used as a flag - </tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt class="py-string"> usually to indicate new file */</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"><tt class="py-string"> UINT32 compression_type; /* type of image compression */</tt> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt class="py-string"> UINT32 compression1; /* compression parameter 1 */</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"><tt class="py-string"> UINT32 compression2; /* compression parameter 2 */</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"><tt class="py-string"> UINT32 compression3; /* compression parameter 3 */</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"><tt class="py-string"> UINT32 compression4; /* compression parameter 4 */</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"><tt class="py-string"> UINT32 compression5; /* compression parameter 4 */</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"><tt class="py-string"> UINT32 compression6; /* compression parameter 4 */</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"><tt class="py-string"> UINT32 nheaders; /* total number of headers */</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"><tt class="py-string"> UINT32 nfast; /* number of pixels in one line */</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"><tt class="py-string"> UINT32 nslow; /* number of lines in image */</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"><tt class="py-string"> UINT32 depth; /* number of bytes per pixel */</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"><tt class="py-string"> UINT32 record_length; /* number of pixels between </tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"><tt class="py-string"> succesive rows */</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"><tt class="py-string"> UINT32 signif_bits; /* true depth of data, in bits */</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"><tt class="py-string"> UINT32 data_type; /* (signed,unsigned,float...) */</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"><tt class="py-string"> UINT32 saturated_value; /* value marks pixel as saturated */</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"><tt class="py-string"> UINT32 sequence; /* TRUE or FALSE */</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"><tt class="py-string"> UINT32 nimages; /* total number of images - size of </tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"><tt class="py-string"> each is nfast*(nslow/nimages) */</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"><tt class="py-string"> UINT32 origin; /* corner of origin */</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"><tt class="py-string"> UINT32 orientation; /* direction of fast axis */</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"><tt class="py-string"> UINT32 view_direction; /* direction to view frame */</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"><tt class="py-string"> UINT32 overflow_location;/* FOLLOWING_HEADER, FOLLOWING_DATA */</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"><tt class="py-string"> UINT32 over_8_bits; /* # of pixels with counts 255 */</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"><tt class="py-string"> UINT32 over_16_bits; /* # of pixels with count 65535 */</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"><tt class="py-string"> UINT32 multiplexed; /* multiplex flag */</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"><tt class="py-string"> UINT32 nfastimages; /* # of images in fast direction */</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"><tt class="py-string"> UINT32 nslowimages; /* # of images in slow direction */</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"><tt class="py-string"> UINT32 background_applied;/* flags correction has been applied </tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"><tt class="py-string"> hold magic number ? */</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"><tt class="py-string"> UINT32 bias_applied; /* flags correction has been applied</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt class="py-string"> hold magic number ? */</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt class="py-string"> UINT32 flatfield_applied;/* flags correction has been applied -</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"><tt class="py-string"> hold magic number ? */</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"><tt class="py-string"> UINT32 distortion_applied;/*flags correction has been applied - </tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"><tt class="py-string"> hold magic number ? */</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"><tt class="py-string"> UINT32 original_header_type; /* Header/frame type from file </tt> </tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"><tt class="py-string"> that frame is read from */</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"><tt class="py-string"> UINT32 file_saved; /* Flag that file has been saved, </tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt class="py-string"> should be zeroed if modified */</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"><tt class="py-string"> char reserve1[(64-40)*sizeof(INT32)-16];</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"><tt class="py-string"> /* Data statistics (128) */</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"><tt class="py-string"> UINT32 total_counts[2]; /* 64 bit integer range = 1.85E19*/</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"><tt class="py-string"> UINT32 special_counts1[2];</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"><tt class="py-string"> UINT32 special_counts2[2];</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"><tt class="py-string"> UINT32 min;</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"><tt class="py-string"> UINT32 max;</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"><tt class="py-string"> UINT32 mean;</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"><tt class="py-string"> UINT32 rms;</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt class="py-string"> UINT32 p10;</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt class="py-string"> UINT32 p90;</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"><tt class="py-string"> UINT32 stats_uptodate;</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"><tt class="py-string"> UINT32 pixel_noise[MAXIMAGES]; /*1000*base noise value (ADUs) */</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"><tt class="py-string"> char reserve2[(32-13-MAXIMAGES)*sizeof(INT32)];</tt> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"><tt class="py-string"> /* More statistics (256) */</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"><tt class="py-string"> UINT16 percentile[128];</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"><tt class="py-string"> /* Goniostat parameters (128 bytes) */</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"><tt class="py-string"> INT32 xtal_to_detector; /* 1000*distance in millimeters */</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"><tt class="py-string"> INT32 beam_x; /* 1000*x beam position (pixels) */</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"><tt class="py-string"> INT32 beam_y; /* 1000*y beam position (pixels) */</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"><tt class="py-string"> INT32 integration_time; /* integration time in milliseconds */</tt> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"><tt class="py-string"> INT32 exposure_time; /* exposure time in milliseconds */</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"><tt class="py-string"> INT32 readout_time; /* readout time in milliseconds */</tt> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"><tt class="py-string"> INT32 nreads; /* number of readouts to get this image */</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"><tt class="py-string"> INT32 start_twotheta; /* 1000*two_theta angle */</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"><tt class="py-string"> INT32 start_omega; /* 1000*omega angle */</tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"><tt class="py-string"> INT32 start_chi; /* 1000*chi angle */</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"><tt class="py-string"> INT32 start_kappa; /* 1000*kappa angle */</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt class="py-string"> INT32 start_phi; /* 1000*phi angle */</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"><tt class="py-string"> INT32 start_delta; /* 1000*delta angle */</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"><tt class="py-string"> INT32 start_gamma; /* 1000*gamma angle */</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"><tt class="py-string"> INT32 start_xtal_to_detector; /* 1000*distance in mm (dist in um)*/</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"><tt class="py-string"> INT32 end_twotheta; /* 1000*two_theta angle */</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"><tt class="py-string"> INT32 end_omega; /* 1000*omega angle */</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"><tt class="py-string"> INT32 end_chi; /* 1000*chi angle */</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"><tt class="py-string"> INT32 end_kappa; /* 1000*kappa angle */</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"><tt class="py-string"> INT32 end_phi; /* 1000*phi angle */</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"><tt class="py-string"> INT32 end_delta; /* 1000*delta angle */</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"><tt class="py-string"> INT32 end_gamma; /* 1000*gamma angle */</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"><tt class="py-string"> INT32 end_xtal_to_detector; /* 1000*distance in mm (dist in um)*/</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"><tt class="py-string"> INT32 rotation_axis; /* active rotation axis */</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"><tt class="py-string"> INT32 rotation_range; /* 1000*rotation angle */</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"><tt class="py-string"> INT32 detector_rotx; /* 1000*rotation of detector around X */</tt> </tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"><tt class="py-string"> INT32 detector_roty; /* 1000*rotation of detector around Y */</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"><tt class="py-string"> INT32 detector_rotz; /* 1000*rotation of detector around Z */</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"><tt class="py-string"> char reserve3[(32-28)*sizeof(INT32)];</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"><tt class="py-string"> /* Detector parameters (128 bytes) */</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"><tt class="py-string"> INT32 detector_type; /* detector type */</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"><tt class="py-string"> INT32 pixelsize_x; /* pixel size (nanometers) */</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"><tt class="py-string"> INT32 pixelsize_y; /* pixel size (nanometers) */</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"><tt class="py-string"> INT32 mean_bias; /* 1000*mean bias value */</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"><tt class="py-string"> INT32 photons_per_100adu; /* photons / 100 ADUs */</tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"><tt class="py-string"> INT32 measured_bias[MAXIMAGES];/* 1000*mean bias value for each image*/</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"><tt class="py-string"> INT32 measured_temperature[MAXIMAGES]; /* Temperature of each </tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"><tt class="py-string"> detector in milliKelvins */</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"><tt class="py-string"> INT32 measured_pressure[MAXIMAGES]; /* Pressure of each chamber </tt> </tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"><tt class="py-string"> in microTorr */</tt> </tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"><tt class="py-string"> /* Retired reserve4 when MAXIMAGES set to 9 from 16 and </tt> </tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"><tt class="py-string"> two fields removed, and temp and pressure added</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"><tt class="py-string"> char reserve4[(32-(5+3*MAXIMAGES))*sizeof(INT32)]</tt> </tt>
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"><tt class="py-string"> */</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"><tt class="py-string"> /* X-ray source and optics parameters (128 bytes) */</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"><tt class="py-string"> /* X-ray source parameters (8*4 bytes) */</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"><tt class="py-string"> INT32 source_type; /* (code) - target, synch. etc */</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"><tt class="py-string"> INT32 source_dx; /* Optics param. - (size microns) */</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"><tt class="py-string"> INT32 source_dy; /* Optics param. - (size microns) */</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"><tt class="py-string"> INT32 source_wavelength; /* wavelength (femtoMeters) */</tt> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"><tt class="py-string"> INT32 source_power; /* (Watts) */</tt> </tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"><tt class="py-string"> INT32 source_voltage; /* (Volts) */</tt> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"><tt class="py-string"> INT32 source_current; /* (microAmps) */</tt> </tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"><tt class="py-string"> INT32 source_bias; /* (Volts) */</tt> </tt>
-<a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"><tt class="py-string"> INT32 source_polarization_x; /* () */</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"><tt class="py-string"> INT32 source_polarization_y; /* () */</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"><tt class="py-string"> char reserve_source[4*sizeof(INT32)];</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"><tt class="py-string"> /* X-ray optics_parameters (8*4 bytes) */</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_type; /* Optics type (code)*/</tt> </tt>
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_dx; /* Optics param. - (size microns) */</tt> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_dy; /* Optics param. - (size microns) */</tt> </tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_wavelength; /* Optics param. - (size microns) */</tt> </tt>
-<a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_dispersion; /* Optics param. - (*10E6) */</tt> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_crossfire_x; /* Optics param. - (microRadians) */</tt> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_crossfire_y; /* Optics param. - (microRadians) */</tt> </tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_angle; /* Optics param. - (monoch. </tt> </tt>
-<a name="L175"></a><tt class="py-lineno">175</tt> <tt class="py-line"><tt class="py-string"> 2theta - microradians) */</tt> </tt>
-<a name="L176"></a><tt class="py-lineno">176</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_polarization_x; /* () */</tt> </tt>
-<a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"><tt class="py-string"> INT32 optics_polarization_y; /* () */</tt> </tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"><tt class="py-string"> char reserve_optics[4*sizeof(INT32)];</tt> </tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"><tt class="py-string"> char reserve5[((32-28)*sizeof(INT32))];</tt> </tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"><tt class="py-string"> /* File parameters (1024 bytes) */</tt> </tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"><tt class="py-string"> char filetitle[128]; /* Title */</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"><tt class="py-string"> char filepath[128]; /* path name for data file */</tt> </tt>
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"><tt class="py-string"> char filename[64]; /* name of data file */</tt> </tt>
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"><tt class="py-string"> char acquire_timestamp[32]; /* date and time of acquisition */</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"><tt class="py-string"> char header_timestamp[32]; /* date and time of header update */</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"><tt class="py-string"> char save_timestamp[32]; /* date and time file saved */</tt> </tt>
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"><tt class="py-string"> char file_comments[512]; /* comments, use as desired */</tt> </tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"><tt class="py-string"> char reserve6[1024-(128+128+64+(3*32)+512)];</tt> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"><tt class="py-string"> /* Dataset parameters (512 bytes) */</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"><tt class="py-string"> char dataset_comments[512]; /* comments, used as desired */</tt> </tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"><tt class="py-string"> /* pad out to 3072 bytes */</tt> </tt>
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"><tt class="py-string"> char pad[3072-(256+128+256+(3*128)+1024+512)]; </tt> </tt>
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"><tt class="py-string"></tt> </tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"><tt class="py-string"> } frame_header;</tt> </tt>
-<a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"><tt class="py-string">"""</tt> </tt>
-<a name="L199"></a><tt class="py-lineno">199</tt> <tt class="py-line"> </tt>
-<a name="L200"></a><tt class="py-lineno">200</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">struct</tt> </tt>
-<a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"><tt class="py-comment"># Convert mar c header file types to python struct module types</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable fabio.marccdimage.C_TO_STRUCT=fabio.marccdimage-module.html#C_TO_STRUCT"><a title="fabio.marccdimage.C_TO_STRUCT" class="py-name" href="#" onclick="return doclink('link-4', 'C_TO_STRUCT', 'link-4');">C_TO_STRUCT</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> <tt class="py-string">"INT32"</tt> <tt class="py-op">:</tt> <tt class="py-string">"i"</tt><tt class="py-op">,</tt> </tt>
-<a name="L205"></a><tt class="py-lineno">205</tt> <tt class="py-line"> <tt class="py-string">"UINT32"</tt> <tt class="py-op">:</tt> <tt class="py-string">"I"</tt><tt class="py-op">,</tt> </tt>
-<a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-string">"char"</tt> <tt class="py-op">:</tt> <tt class="py-string">"c"</tt><tt class="py-op">,</tt> </tt>
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> <tt class="py-string">"UINT16"</tt> <tt class="py-op">:</tt> <tt class="py-string">"H"</tt> </tt>
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> </tt>
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"><tt class="py-comment"># Sizes (bytes) of mar c header objects</tt> </tt>
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"><tt id="link-5" class="py-name" targets="Variable fabio.marccdimage.C_SIZES=fabio.marccdimage-module.html#C_SIZES"><a title="fabio.marccdimage.C_SIZES" class="py-name" href="#" onclick="return doclink('link-5', 'C_SIZES', 'link-5');">C_SIZES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-string">"INT32"</tt> <tt class="py-op">:</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> </tt>
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-string">"UINT32"</tt> <tt class="py-op">:</tt> <tt class="py-number">4</tt><tt class="py-op">,</tt> </tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-string">"char"</tt> <tt class="py-op">:</tt> <tt class="py-number">1</tt><tt class="py-op">,</tt> </tt>
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-string">"UINT16"</tt> <tt class="py-op">:</tt> <tt class="py-number">2</tt> </tt>
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> </tt>
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"><tt class="py-comment"># This was worked out by trial and error from a trial image I think</tt> </tt>
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"><tt id="link-6" class="py-name" targets="Variable fabio.marccdimage.MAXIMAGES=fabio.marccdimage-module.html#MAXIMAGES"><a title="fabio.marccdimage.MAXIMAGES" class="py-name" href="#" onclick="return doclink('link-6', 'MAXIMAGES', 'link-6');">MAXIMAGES</a></tt> <tt class="py-op">=</tt> <tt class="py-number">9</tt> </tt>
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> </tt>
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> </tt>
-<a name="make_format"></a><div id="make_format-def"><a name="L222"></a><tt class="py-lineno">222</tt> <a class="py-toggle" href="#" id="make_format-toggle" onclick="return toggle('make_format');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.marccdimage-module.html#make_format">make_format</a><tt class="py-op">(</tt><tt class="py-param">c_def_string</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="make_format-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="make_format-expanded"><a name="L223"></a><tt class="py-lineno">223</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L224"></a><tt class="py-lineno">224</tt> <tt class="py-line"><tt class="py-docstring"> Reads the header definition in c and makes the format </tt> </tt>
-<a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"><tt class="py-docstring"> string to pass to struct.unpack</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt id="link-7" class="py-name" targets="Variable fabio.fabioutils.lines=fabio.fabioutils-module.html#lines"><a title="fabio.fabioutils.lines" class="py-name" href="#" onclick="return doclink('link-7', 'lines', 'link-7');">lines</a></tt> <tt class="py-op">=</tt> <tt class="py-name">c_def_string</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">"\n"</tt><tt clas [...]
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt> </tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-name">names</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> <tt class="py-name">expected</tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L231"></a><tt class="py-lineno">231</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">line</tt> <tt class="py-keyword">in</tt> <tt id="link-8" class="py-name"><a title="fabio.fabioutils.lines" class="py-name" href="#" onclick="return doclink('link-8', 'lines', 'link-7');">lines</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">";"</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"> <tt class="py-name">decl</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">";"</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">lstrip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op"> [...]
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-op">[</tt><tt class="py-name">typ</tt><tt class="py-op">,</tt> <tt class="py-name">name</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">decl</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt id="link-9" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-9', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"skipping: %s"</tt> <tt class="py-op">,</tt> <tt class="py-name">line</tt><tt class="py-op">)</tt> </tt>
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">name</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"["</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt class="py-comment"># repeated ... times</tt> </tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">name</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">"["</tt><tt class="py-op">)</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">"]"</tt><tt cl [...]
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">num</tt><tt class="py-op">.</tt><tt class="py-name">replace</tt><tt class="py-op">(</tt><tt class="py-string">"MAXIMAGES"</tt><tt class="py-op">,</tt> <tt id="link-10" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fa [...]
-str" class="py-name" href="#" onclick="return doclink('link-10', 'str', 'link-10');">str</a></tt><tt class="py-op">(</tt><tt id="link-11" class="py-name"><a title="fabio.marccdimage.MAXIMAGES" class="py-name" href="#" onclick="return doclink('link-11', 'MAXIMAGES', 'link-6');">MAXIMAGES</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-name">num</tt> <tt class="py-op">=</tt> <tt class="py-name">num</tt><tt class="py-op">.</tt><tt class="py-name">replace</tt><tt class="py-op">(</tt><tt class="py-string">"sizeof(INT32)"</tt><tt class="py-op">,</tt> <tt class="py-string">"4"</tt><tt class="py-op">)</tt> </tt>
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-name">times</tt> <tt class="py-op">=</tt> <tt class="py-name">eval</tt><tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">)</tt> </tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt id="link-12" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-12', 'logger', 'link-2');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"%s Please decode %s"</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">,</tt> <tt class="py-name">decl</tt><tt class="py-op">)</tt> </tt>
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">error</tt> </tt>
-<a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L252"></a><tt class="py-lineno">252</tt> <tt class="py-line"> <tt class="py-name">times</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-name">fmt</tt> <tt class="py-op">+=</tt> <tt id="link-13" class="py-name"><a title="fabio.marccdimage.C_TO_STRUCT" class="py-name" href="#" onclick="return doclink('link-13', 'C_TO_STRUCT', 'link-4');">C_TO_STRUCT</a></tt><tt class="py-op">[</tt><tt class="py-name">typ</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">times</tt> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-name">names</tt> <tt class="py-op">+=</tt> <tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">times</tt> </tt>
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt class="py-name">expected</tt> <tt class="py-op">+=</tt> <tt id="link-14" class="py-name"><a title="fabio.marccdimage.C_SIZES" class="py-name" href="#" onclick="return doclink('link-14', 'C_SIZES', 'link-5');">C_SIZES</a></tt><tt class="py-op">[</tt><tt class="py-name">typ</tt><tt class="py-op">]</tt> <tt class="py-op">*</tt> <tt class="py-name">times</tt> </tt>
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">KeyError</tt><tt class="py-op">:</tt> </tt>
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-keyword">continue</tt> </tt>
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">names</tt><tt class="py-op">,</tt> <tt class="py-name">fmt</tt> </tt>
-</div><a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"><tt class="py-comment"># Make these be compiled on loading module</tt> </tt>
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"><tt id="link-15" class="py-name" targets="Variable fabio.marccdimage.HEADER_NAMES=fabio.marccdimage-module.html#HEADER_NAMES"><a title="fabio.marccdimage.HEADER_NAMES" class="py-name" href="#" onclick="return doclink('link-15', 'HEADER_NAMES', 'link-15');">HEADER_NAMES</a></tt><tt class="py-op">,</tt> <tt id="link-16" class="py-name" targets="Variable fabio.marccdimage.HEADER_FORMAT=fabio.marccdimage-module.html#HEADE [...]
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> </tt>
-<a name="interpret_header"></a><div id="interpret_header-def"><a name="L264"></a><tt class="py-lineno">264</tt> <a class="py-toggle" href="#" id="interpret_header-toggle" onclick="return toggle('interpret_header');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.marccdimage-module.html#interpret_header">interpret_header</a><tt class="py-op">(</tt><tt class="py-param">header</tt><tt class="py-op">,</tt> <tt class="py-param">fmt</tt><tt class="p [...]
-</div><div id="interpret_header-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="interpret_header-expanded"><a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"><tt class="py-docstring"> given a format and header interpret it</tt> </tt>
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-name">values</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name" targets="Method fabio.edfimage.edfimage.unpack()=fabio.edfimage.edfimage-class.html#unpack,Method fabio.tifimage.Image_File_Directory.unpack()=fabio.tifimage.Image_File_Directory-class.html#unpack,Method fabio.tifimage.Image_File_Directory_entry.unpack()=fabio.tifimage.Im [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-19', 'unpack', 'link-19');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">fmt</tt><tt class="py-op">,</tt> <tt id="link-20" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-20', 'header', 'link-20');">header</a></tt><t [...]
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-name">hdr</tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt id="link-21" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-21', 'i', 'link-21');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">name</tt> <tt class="py-keyword">in</tt> <tt class="py-name">names</tt><tt class="py-op">:</tt> </tt>
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hdr</tt><tt class="py-op">.</tt><tt class="py-name">has_key</tt><tt class="py-op">(</tt><tt class="py-name">name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">values</tt><tt class="py-op">[</tt><tt id="link-22" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-22', 'i', 'link-21');">i</a></tt><tt class="py-op">]</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">type</tt><tt class="py-o [...]
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-name">hdr</tt><tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">hdr</tt><tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt> <tt class="py-op">+</tt> <tt class="py-name">values</tt><tt class="py-op">[</tt><tt id="link-23" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" [...]
-<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-name">hdr</tt><tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">values</tt><tt class="py-op">[</tt><tt id="link-24" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-24', 'i', 'link-21');">i</a></tt><tt class=" [...]
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">AttributeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-name">hdr</tt><tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-name">hdr</tt><tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt><tt class="py-op">,</tt> <tt class="py-name">values</tt><tt class="py-op">[</tt><tt id="link-25" class="py-name"><a title="fabio.fabioutils.i [...]
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-name">hdr</tt><tt class="py-op">[</tt><tt class="py-name">name</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">values</tt><tt class="py-op">[</tt><tt id="link-26" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-26', 'i', 'link-21');">i</a></tt><tt class="py-op">]</tt> </tt>
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt id="link-27" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-27', 'i', 'link-21');">i</a></tt> <tt class="py-op">=</tt> <tt id="link-28" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-28', 'i', 'link-21');">i</a></tt> <tt class="py-op">+</tt> <tt class="py-number">1</tt> </tt>
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> </tt>
-<a name="L284"></a><tt class="py-lineno">284</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">hdr</tt> </tt>
-</div><a name="L285"></a><tt class="py-lineno">285</tt> <tt class="py-line"> </tt>
-<a name="L286"></a><tt class="py-lineno">286</tt> <tt class="py-line"> </tt>
-<a name="marccdimage"></a><div id="marccdimage-def"><a name="L287"></a><tt class="py-lineno">287</tt> <a class="py-toggle" href="#" id="marccdimage-toggle" onclick="return toggle('marccdimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.marccdimage.marccdimage-class.html">marccdimage</a><tt class="py-op">(</tt><tt class="py-base-class">tifimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="marccdimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="marccdimage-expanded"><a name="L288"></a><tt class="py-lineno">288</tt> <tt class="py-line"> <tt class="py-docstring">""" Read in data in mar ccd format, also </tt> </tt>
-<a name="L289"></a><tt class="py-lineno">289</tt> <tt class="py-line"><tt class="py-docstring"> MarMosaic images, including header info """</tt> </tt>
-<a name="L290"></a><tt class="py-lineno">290</tt> <tt class="py-line"> </tt>
-<a name="L291"></a><tt class="py-lineno">291</tt> <tt class="py-line"> </tt>
-<a name="marccdimage._readheader"></a><div id="marccdimage._readheader-def"><a name="L292"></a><tt class="py-lineno">292</tt> <a class="py-toggle" href="#" id="marccdimage._readheader-toggle" onclick="return toggle('marccdimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.marccdimage.marccdimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class= [...]
-</div><div id="marccdimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="marccdimage._readheader-expanded"><a name="L293"></a><tt class="py-lineno">293</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L294"></a><tt class="py-lineno">294</tt> <tt class="py-line"><tt class="py-docstring"> Parser based approach</tt> </tt>
-<a name="L295"></a><tt class="py-lineno">295</tt> <tt class="py-line"><tt class="py-docstring"> Gets all entries</tt> </tt>
-<a name="L296"></a><tt class="py-lineno">296</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L297"></a><tt class="py-lineno">297</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">1024</tt><tt class="py-op">)</tt> </tt>
-<a name="L298"></a><tt class="py-lineno">298</tt> <tt class="py-line"> <tt class="py-name">hstr</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDima [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-29', 'read', 'link-29');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">3072</tt><tt class="py-op">)</tt> </tt>
-<a name="L299"></a><tt class="py-lineno">299</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-30', 'header', 'link-20');">header</a></tt> <tt class="py-op">=</tt> <tt id="link-31" class="py-name" targets="Function fabio.marccdimage.interpret_header()=fabio.marccdimage-module.html#interpret_header"><a title="fabio.marccdima [...]
-</div><a name="L300"></a><tt class="py-lineno">300</tt> <tt class="py-line"> </tt>
-<a name="L301"></a><tt class="py-lineno">301</tt> <tt class="py-line"> </tt>
-<a name="L302"></a><tt class="py-lineno">302</tt> <tt class="py-line"> </tt>
-<a name="marccdimage._read"></a><div id="marccdimage._read-def"><a name="L303"></a><tt class="py-lineno">303</tt> <a class="py-toggle" href="#" id="marccdimage._read-toggle" onclick="return toggle('marccdimage._read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.marccdimage.marccdimage-class.html#_read">_read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-o [...]
-</div><div id="marccdimage._read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="marccdimage._read-expanded"><a name="L304"></a><tt class="py-lineno">304</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L305"></a><tt class="py-lineno">305</tt> <tt class="py-line"><tt class="py-docstring"> inherited from tifimage</tt> </tt>
-<a name="L306"></a><tt class="py-lineno">306</tt> <tt class="py-line"><tt class="py-docstring"> ... a marccd image *is a* tif image</tt> </tt>
-<a name="L307"></a><tt class="py-lineno">307</tt> <tt class="py-line"><tt class="py-docstring"> just with a header</tt> </tt>
-<a name="L308"></a><tt class="py-lineno">308</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L309"></a><tt class="py-lineno">309</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-34" class="py-name"><a title="fabio.tifimage
-fabio.tifimage.tifimage" class="py-name" href="#" onclick="return doclink('link-34', 'tifimage', 'link-0');">tifimage</a></tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-35', 'read', 'link-29');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L310"></a><tt class="py-lineno">310</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
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-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.marccdimage.marccdimage-class.html b/doc/html/fabio.marccdimage.marccdimage-class.html
deleted file mode 100644
index b1b9d83..0000000
--- a/doc/html/fabio.marccdimage.marccdimage-class.html
+++ /dev/null
@@ -1,368 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.marccdimage.marccdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.marccdimage-module.html">Module marccdimage</a> ::
- Class marccdimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.marccdimage.marccdimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class marccdimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.marccdimage-pysrc.html#marccdimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <a href="fabio.tifimage.tifimage-class.html">tifimage.tifimage</a> --+
- |
- <strong class="uidshort">marccdimage</strong>
-</pre>
-
-<hr />
-<p>Read in data in mar ccd format, also MarMosaic images, including
- header info</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.marccdimage.marccdimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Parser based approach Gets all entries</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.marccdimage-pysrc.html#marccdimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.marccdimage.marccdimage-class.html#_read" class="summary-sig-name" onclick="show_private();">_read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- inherited from tifimage ...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.marccdimage-pysrc.html#marccdimage._read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.tifimage.tifimage-class.html">tifimage.tifimage</a></code></b>:
- <code><a href="fabio.tifimage.tifimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.tifimage.tifimage-class.html#read">read</a></code>,
- <code><a href="fabio.tifimage.tifimage-class.html#write">write</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.tifimage.tifimage-class.html">tifimage.tifimage</a></code></b> (private):
- <code><a href="fabio.tifimage.tifimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.marccdimage-pysrc.html#marccdimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Parser based approach Gets all entries</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_read"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.marccdimage-pysrc.html#marccdimage._read">source code</a></span>
- </td>
- </tr></table>
-
- <p>inherited from tifimage ... a marccd image *is a* tif image just with
- a header</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.openimage-module.html b/doc/html/fabio.openimage-module.html
deleted file mode 100644
index a2f0165..0000000
--- a/doc/html/fabio.openimage-module.html
+++ /dev/null
@@ -1,298 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.openimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
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- Module openimage
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-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module openimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.openimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:henning.sorensen at risoe.dk
-
-mods for fabio by JPW
-
-</pre>
-
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
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- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="do_magic"></a><span class="summary-sig-name">do_magic</span>(<span class="summary-sig-arg">byts</span>)</span><br />
- Try to interpret the bytes starting the file as a magic number</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.openimage-pysrc.html#do_magic">source code</a></span>
-
- </td>
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-
- </td>
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- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="openimage"></a><span class="summary-sig-name">openimage</span>(<span class="summary-sig-arg">filename</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Try to open an image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.openimage-pysrc.html#openimage">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="openheader"></a><span class="summary-sig-name">openheader</span>(<span class="summary-sig-arg">filename</span>)</span><br />
- return only the header</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.openimage-pysrc.html#openheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_openimage"></a><span class="summary-sig-name">_openimage</span>(<span class="summary-sig-arg">filename</span>)</span><br />
- determine which format for a filename and return appropriate class
- which can be used for opening the image</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.openimage-pysrc.html#_openimage">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
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-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
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- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("openimage")">logging.getLogger("openimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.openimage-module.html#MAGIC_NUMBERS" class="summary-name">MAGIC_NUMBERS</a> = <code title="[('FORMAT : 86', 'bruker'),
- ('MM\x00*', 'tif'),
- ('II*\x00\x08\x00', 'marccd'),
- ('II*\x00\x82\x00', 'pilatus'),
- ('II*\x00', 'tif'),
- ('{\nHEA', 'adsc'),
- ('{', 'edf'),
- ('\r{', 'edf'),
-..."><code class="variable-group">[</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">FORMAT : 86</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">bruker</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">, </code><code class="variable-group">(</code><code class="variable-q [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
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- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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-<tr><td>
- <h3 class="epydoc">MAGIC_NUMBERS</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">[</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">FORMAT : 86</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">bruker</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">MM\x00*</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">tif</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">II*\x00\x08\x00</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">marccd</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">II*\x00\x82\x00</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">pilatus</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">II*\x00</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">tif</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">{\nHEA</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">adsc</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">{</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">edf</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">\r{</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">edf</code><code class="variable-quote">'</code><code class="variable-group">)</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
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diff --git a/doc/html/fabio.openimage-pysrc.html b/doc/html/fabio.openimage-pysrc.html
deleted file mode 100644
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--- a/doc/html/fabio.openimage-pysrc.html
+++ /dev/null
@@ -1,665 +0,0 @@
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- <a href="fabio-module.html">Package fabio</a> ::
- Module openimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.openimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.openimage-module.html">Module fabio.openimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> email:henning.sorensen at risoe.dk</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring">mods for fabio by JPW</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">sys</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"openimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioutils=fabio.fabioutils-module.html"><a title="fabio.fabioutils" class="py-name" href="#" onclick="return doclink('link-1', 'fabioutils', 'link-1');">fabioutils</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name" targets="Function fabio.fabioutils.deconstruct_filename()=fabio.fabioutils-module.html#decons [...]
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-4" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-4', 'fabioimage', 'link-4');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-5', 'fabioimage', 'link-4');">fabioimage</a></tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-6" class="py-name" targets="Module fabio.edfimage=fabio.edfimage-module.html,Class fabio.edfimage.edfimage=fabio.edfimage.edfimage-class.html"><a title="fabio.edfimage
-fabio.edfimage.edfimage" class="py-name" href="#" onclick="return doclink('link-6', 'edfimage', 'link-6');">edfimage</a></tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-7" class="py-name" targets="Module fabio.adscimage=fabio.adscimage-module.html,Class fabio.adscimage.adscimage=fabio.adscimage.adscimage-class.html"><a title="fabio.adscimage
-fabio.adscimage.adscimage" class="py-name" href="#" onclick="return doclink('link-7', 'adscimage', 'link-7');">adscimage</a></tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-8" class="py-name" targets="Module fabio.tifimage=fabio.tifimage-module.html,Class fabio.tifimage.tifimage=fabio.tifimage.tifimage-class.html"><a title="fabio.tifimage
-fabio.tifimage.tifimage" class="py-name" href="#" onclick="return doclink('link-8', 'tifimage', 'link-8');">tifimage</a></tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-9" class="py-name" targets="Module fabio.marccdimage=fabio.marccdimage-module.html,Class fabio.marccdimage.marccdimage=fabio.marccdimage.marccdimage-class.html"><a title="fabio.marccdimage
-fabio.marccdimage.marccdimage" class="py-name" href="#" onclick="return doclink('link-9', 'marccdimage', 'link-9');">marccdimage</a></tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-10" class="py-name" targets="Module fabio.mar345image=fabio.mar345image-module.html,Class fabio.mar345image.mar345image=fabio.mar345image.mar345image-class.html"><a title="fabio.mar345image
-fabio.mar345image.mar345image" class="py-name" href="#" onclick="return doclink('link-10', 'mar345image', 'link-10');">mar345image</a></tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-11" class="py-name" targets="Module fabio.fit2dmaskimage=fabio.fit2dmaskimage-module.html,Class fabio.fit2dmaskimage.fit2dmaskimage=fabio.fit2dmaskimage.fit2dmaskimage-class.html"><a title="fabio.fit2dmaskimage
-fabio.fit2dmaskimage.fit2dmaskimage" class="py-name" href="#" onclick="return doclink('link-11', 'fit2dmaskimage', 'link-11');">fit2dmaskimage</a></tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-12" class="py-name" targets="Module fabio.brukerimage=fabio.brukerimage-module.html,Class fabio.brukerimage.brukerimage=fabio.brukerimage.brukerimage-class.html"><a title="fabio.brukerimage
-fabio.brukerimage.brukerimage" class="py-name" href="#" onclick="return doclink('link-12', 'brukerimage', 'link-12');">brukerimage</a></tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-13" class="py-name" targets="Module fabio.bruker100image=fabio.bruker100image-module.html,Class fabio.bruker100image.bruker100image=fabio.bruker100image.bruker100image-class.html"><a title="fabio.bruker100image
-fabio.bruker100image.bruker100image" class="py-name" href="#" onclick="return doclink('link-13', 'bruker100image', 'link-13');">bruker100image</a></tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-14" class="py-name" targets="Module fabio.pnmimage=fabio.pnmimage-module.html,Class fabio.pnmimage.pnmimage=fabio.pnmimage.pnmimage-class.html"><a title="fabio.pnmimage
-fabio.pnmimage.pnmimage" class="py-name" href="#" onclick="return doclink('link-14', 'pnmimage', 'link-14');">pnmimage</a></tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-15" class="py-name" targets="Module fabio.GEimage=fabio.GEimage-module.html,Class fabio.GEimage.GEimage=fabio.GEimage.GEimage-class.html,Class fabio.GEimage_old.GEimage=fabio.GEimage_old.GEimage-class.html"><a title="fabio.GEimage
-fabio.GEimage.GEimage
-fabio.GEimage_old.GEimage" class="py-name" href="#" onclick="return doclink('link-15', 'GEimage', 'link-15');">GEimage</a></tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-16" class="py-name" targets="Module fabio.OXDimage=fabio.OXDimage-module.html,Class fabio.OXDimage.OXDimage=fabio.OXDimage.OXDimage-class.html"><a title="fabio.OXDimage
-fabio.OXDimage.OXDimage" class="py-name" href="#" onclick="return doclink('link-16', 'OXDimage', 'link-16');">OXDimage</a></tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-17" class="py-name" targets="Module fabio.dm3image=fabio.dm3image-module.html,Class fabio.dm3image.dm3image=fabio.dm3image.dm3image-class.html"><a title="fabio.dm3image
-fabio.dm3image.dm3image" class="py-name" href="#" onclick="return doclink('link-17', 'dm3image', 'link-17');">dm3image</a></tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-18" class="py-name" targets="Module fabio.HiPiCimage=fabio.HiPiCimage-module.html,Class fabio.HiPiCimage.HiPiCimage=fabio.HiPiCimage.HiPiCimage-class.html"><a title="fabio.HiPiCimage
-fabio.HiPiCimage.HiPiCimage" class="py-name" href="#" onclick="return doclink('link-18', 'HiPiCimage', 'link-18');">HiPiCimage</a></tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-19" class="py-name" targets="Module fabio.pilatusimage=fabio.pilatusimage-module.html,Class fabio.pilatusimage.pilatusimage=fabio.pilatusimage.pilatusimage-class.html"><a title="fabio.pilatusimage
-fabio.pilatusimage.pilatusimage" class="py-name" href="#" onclick="return doclink('link-19', 'pilatusimage', 'link-19');">pilatusimage</a></tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-20" class="py-name" targets="Module fabio.fit2dspreadsheetimage=fabio.fit2dspreadsheetimage-module.html,Class fabio.fit2dspreadsheetimage.fit2dspreadsheetimage=fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html"><a title="fabio.fit2dspreadsheetimage
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage" class="py-name" href="#" onclick="return doclink('link-20', 'fit2dspreadsheetimage', 'link-20');">fit2dspreadsheetimage</a></tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-21" class="py-name" targets="Module fabio.kcdimage=fabio.kcdimage-module.html,Class fabio.kcdimage.kcdimage=fabio.kcdimage.kcdimage-class.html"><a title="fabio.kcdimage
-fabio.kcdimage.kcdimage" class="py-name" href="#" onclick="return doclink('link-21', 'kcdimage', 'link-21');">kcdimage</a></tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-22" class="py-name" targets="Module fabio.cbfimage=fabio.cbfimage-module.html,Class fabio.cbfimage.cbfimage=fabio.cbfimage.cbfimage-class.html"><a title="fabio.cbfimage
-fabio.cbfimage.cbfimage" class="py-name" href="#" onclick="return doclink('link-22', 'cbfimage', 'link-22');">cbfimage</a></tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-23" class="py-name" targets="Module fabio.xsdimage=fabio.xsdimage-module.html,Class fabio.xsdimage.xsdimage=fabio.xsdimage.xsdimage-class.html"><a title="fabio.xsdimage
-fabio.xsdimage.xsdimage" class="py-name" href="#" onclick="return doclink('link-23', 'xsdimage', 'link-23');">xsdimage</a></tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt id="link-24" class="py-name" targets="Module fabio.binaryimage=fabio.binaryimage-module.html,Class fabio.binaryimage.binaryimage=fabio.binaryimage.binaryimage-class.html"><a title="fabio.binaryimage
-fabio.binaryimage.binaryimage" class="py-name" href="#" onclick="return doclink('link-24', 'binaryimage', 'link-24');">binaryimage</a></tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"><tt id="link-25" class="py-name" targets="Variable fabio.openimage.MAGIC_NUMBERS=fabio.openimage-module.html#MAGIC_NUMBERS"><a title="fabio.openimage.MAGIC_NUMBERS" class="py-name" href="#" onclick="return doclink('link-25', 'MAGIC_NUMBERS', 'link-25');">MAGIC_NUMBERS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-comment"># "\42\5a" : 'bzipped'</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-comment"># "\1f\8b" : 'gzipped'</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"FORMAT : 86"</tt> <tt class="py-op">,</tt> <tt class="py-string">'bruker'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\x4d\x4d\x00\x2a"</tt> <tt class="py-op">,</tt> <tt class="py-string">'tif'</tt><tt class="py-op">)</tt> <tt class="py-op">,</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-comment"># The marCCD and Pilatus formats are both standard tif with a header</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-comment"># hopefully these byte patterns are unique for the formats</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-comment"># If not the image will be read, but the is missing </tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\x49\x49\x2a\x00\x08\x00"</tt> <tt class="py-op">,</tt> <tt class="py-string">'marccd'</tt><tt class="py-op">)</tt> <tt class="py-op">,</tt> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\x49\x49\x2a\x00\x82\x00"</tt> <tt class="py-op">,</tt> <tt class="py-string">'pilatus'</tt><tt class="py-op">)</tt> <tt class="py-op">,</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\x49\x49\x2a\x00"</tt> <tt class="py-op">,</tt> <tt class="py-string">'tif'</tt><tt class="py-op">)</tt> <tt class="py-op">,</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-comment"># ADSC must come before edf</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"{\nHEA"</tt> <tt class="py-op">,</tt> <tt class="py-string">'adsc'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"{"</tt> <tt class="py-op">,</tt> <tt class="py-string">'edf'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\r{"</tt> <tt class="py-op">,</tt> <tt class="py-string">'edf'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"\n{"</tt> <tt class="py-op">,</tt> <tt class="py-string">'edf'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"ADEPT"</tt> <tt class="py-op">,</tt> <tt class="py-string">'GE'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"OD"</tt> <tt class="py-op">,</tt> <tt class="py-string">'OXD'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"IM"</tt> <tt class="py-op">,</tt> <tt class="py-string">'HiPiC'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'\x2d\x04'</tt> <tt class="py-op">,</tt> <tt class="py-string">'mar345'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'\xd2\x04'</tt> <tt class="py-op">,</tt> <tt class="py-string">'mar345'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'\x04\x2d'</tt> <tt class="py-op">,</tt> <tt class="py-string">'mar345'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-comment">#some machines may need byteswapping</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'\x04\xd2'</tt> <tt class="py-op">,</tt> <tt class="py-string">'mar345'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-comment"># hint : MASK in 32 bit</tt> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'M\x00\x00\x00A\x00\x00\x00S\x00\x00\x00K\x00\x00\x00'</tt> <tt class="py-op">,</tt> <tt class="py-string">'fit2dmask'</tt><tt class="py-op">)</tt> <tt class="py-op">,</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'\x00\x00\x00\x03'</tt> <tt class="py-op">,</tt> <tt class="py-string">'dm3'</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"No"</tt> <tt class="py-op">,</tt> <tt class="py-string">"kcd"</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"<"</tt> <tt class="py-op">,</tt> <tt class="py-string">"xsd"</tt><tt class="py-op">)</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-op">]</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> </tt>
-<a name="do_magic"></a><div id="do_magic-def"><a name="L67"></a><tt class="py-lineno"> 67</tt> <a class="py-toggle" href="#" id="do_magic-toggle" onclick="return toggle('do_magic');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.openimage-module.html#do_magic">do_magic</a><tt class="py-op">(</tt><tt class="py-param">byts</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="do_magic-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="do_magic-expanded"><a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-docstring">""" Try to interpret the bytes starting the file as a magic number """</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">magic</tt><tt class="py-op">,</tt> <tt class="py-name">format_type</tt> <tt class="py-keyword">in</tt> <tt id="link-26" class="py-name"><a title="fabio.openimage.MAGIC_NUMBERS" class="py-name" href="#" onclick="return doclink('link-26', 'MAGIC_NUMBERS', 'link-25');">MAGIC_NUMBERS</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">byts</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-name">magic</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">format_type</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-number">0</tt><tt class="py-op">:</tt> <tt class="py-comment"># debugging - bruker needed 18 bytes below</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt id="link-27" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-27', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"m: %s f: %s"</tt><tt class="py-op">,</tt> <tt class="py-name">magic</tt><tt class="py-op">,</tt> <tt class="py-name">format_type</tt><tt class="py-op">)</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt id="link-28" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-28', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"bytes: %s len(bytes) %s"</tt><tt class="py-op">,</tt> <tt class="py-name">magic</tt><tt class="py-op">,</tt> <tt id="link-29" class="py-name" targets="Method fabio.file_series.file_series.len()=fabio.file_series.file_series-class.html#len"><a title="fabio.file_series.fil [...]
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt id="link-30" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-30', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"found: %s"</tt><tt class="py-op">,</tt> <tt class="py-name">byts</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-name">magic</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-31" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-31', 'i', 'link-31');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt id="link-32" class="py-name"><a title="fabio.file_series.file_series [...]
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt id="link-33" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-33', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"%s %s %s %s "</tt><tt class="py-op">,</tt> <tt class="py-name">ord</tt><tt class="py-op">(</tt><tt class="py-name">magic</tt><tt class="py-op">[</tt><tt id="link-34" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-34', [...]
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Could not interpret magic string"</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> </tt>
-<a name="openimage"></a><div id="openimage-def"><a name="L81"></a><tt class="py-lineno"> 81</tt> <a class="py-toggle" href="#" id="openimage-toggle" onclick="return toggle('openimage');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.openimage-module.html#openimage">openimage</a><tt class="py-op">(</tt><tt class="py-param">filename</tt><tt class="py-op">,</tt> <tt class="py-param">frame</tt><tt class="py-op">=</tt><tt class="py-name">None</tt> [...]
-</div><div id="openimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="openimage-expanded"><a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-docstring">""" Try to open an image """</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">isinstance</tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt id="link-38" class="py-name"><a title="fabio.fabioutils.filename_object" class="py-name" href="#" onclick="return doclink('link-38', 'filename_object', 'link-3');">filename_object</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt id="link-39" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-39', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Attempting to open %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,Method fabio.fabiou [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-40', 'tostring', 'link-40');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-41" class="py-name" targets="Function fabio.openimage._openimage()=fabio.openimage-module.html#_openimage"><a title="fabio.openimage._openimage" class="py-name" href="#" onclick="return doclink('link-41', '_openimage', 'link-41');">_openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">.</tt><tt id="lin [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-42', 'tostring', 'link-40');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-43', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Attempting to read frame %s from %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">frame</tt><tt class="py-op">,</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">filename</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-44', 'tostring', 'link-40');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimag [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-45', 'read', 'link-45');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-46', 'tostring', 'link-40');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">frame</tt><tt class="py-op">)</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">ex</tt><tt class="py-op">:</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-comment"># multiframe file</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-comment">#logger.debug( "DEBUG: multiframe file, start # %d"%(</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-comment"># filename.num)</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt id="link-47" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-47', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Exception %s, trying name %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">ex</tt><tt class="py-op">,</tt> <tt class="py-name">filename</tt><tt class="py-op">.</tt><tt class="py-name">stem</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-48" class="py-name"><a title="fabio.openimage._openimage" class="py-name" href="#" onclick="return doclink('link-48', '_openimage', 'link-41');">_openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">.</tt><tt class="py-name">stem</tt><tt class="py-op">)</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt id="link-49" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-49', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Reading frame %s from %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">.</tt><tt class="py-name">num</tt><tt class="py-op">,</tt> <tt class="py-name">filename</tt><tt class="py-op">.</tt><tt class="py-name">stem [...]
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-50', 'read', 'link-45');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">.</tt><tt class="py-name">stem</tt><tt class="py-op">,</tt> <tt class="py-name">frame</tt><tt class="py-op">=</tt><tt class="py-name">filename</tt><tt class="py-op">.</tt><tt class="py-name">num</tt><tt class="py-op">)</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt id="link-51" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-51', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Attempting to open %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-52" class="py-name"><a title="fabio.openimage._openimage" class="py-name" href="#" onclick="return doclink('link-52', '_openimage', 'link-41');">_openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt id="link-53" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-53', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">debug</tt><tt class="py-op">(</tt><tt class="py-string">"Attempting to read frame %s from %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">frame</tt><tt class="py-op">,</tt> <tt class="py-name">filename</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-54', 'read', 'link-45');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-name">frame</tt><tt class="py-op">)</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt> </tt>
-</div><a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> </tt>
-<a name="openheader"></a><div id="openheader-def"><a name="L106"></a><tt class="py-lineno">106</tt> <a class="py-toggle" href="#" id="openheader-toggle" onclick="return toggle('openheader');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.openimage-module.html#openheader">openheader</a><tt class="py-op">(</tt><tt class="py-param">filename</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="openheader-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="openheader-expanded"><a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-docstring">""" return only the header"""</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt id="link-55" class="py-name"><a title="fabio.openimage._openimage" class="py-name" href="#" onclick="return doclink('link-55', '_openimage', 'link-41');">_openimage</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-name">obj</tt><tt class="py-op">.</tt><tt id="link-56" class="py-name" targets="Method fabio.fabioimage.fabioimage.readheader()=fabio.fabioimage.fabioimage-class.html#readheader"><a title="fabio.fabioimage.fabioimage.readheader" class="py-name" href="#" onclick="return doclink('link-56', 'readheader', 'link-56');">readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class=" [...]
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt> </tt>
-</div><a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> </tt>
-<a name="_openimage"></a><div id="_openimage-def"><a name="L113"></a><tt class="py-lineno">113</tt> <a class="py-toggle" href="#" id="_openimage-toggle" onclick="return toggle('_openimage');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.openimage-module.html#_openimage">_openimage</a><tt class="py-op">(</tt><tt class="py-param">filename</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="_openimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="_openimage-expanded"><a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-docstring">""" </tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"><tt class="py-docstring"> determine which format for a filename</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"><tt class="py-docstring"> and return appropriate class which can be used for opening the image</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">imo</tt> <tt class="py-op">=</tt> <tt id="link-57" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-57', 'fabioimage', 'link-4');">fabioimage</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">byts</tt> <tt class="py-op">=</tt> <tt class="py-name">imo</tt><tt class="py-op">.</tt><tt id="link-58" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-58', '_open', 'link-58');">_open</a></tt><tt class="py-op">(</tt><tt class= [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-59', 'read', 'link-45');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">18</tt><tt class="py-op">)</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-name">filetype</tt> <tt class="py-op">=</tt> <tt id="link-60" class="py-name" targets="Function fabio.openimage.do_magic()=fabio.openimage-module.html#do_magic"><a title="fabio.openimage.do_magic" class="py-name" href="#" onclick="return doclink('link-60', 'do_magic', 'link-60');">do_magic</a></tt><tt class="py-op">(</tt><tt class="py-name">byts</tt><tt class="py-op">)</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">filetype</tt> <tt class="py-op">==</tt> <tt class="py-string">"marccd"</tt> <tt class="py-keyword">and</tt> <tt class="py-name">filename</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"mccd"</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt clas [...]
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-comment"># Cannot see a way around this. Need to find something</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-comment"># to distinguish mccd from regular tif...</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">filetype</tt> <tt class="py-op">=</tt> <tt class="py-string">"tif"</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt id="link-61" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-61', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"%s: File probably does not exist"</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">)</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">error</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt class="py-name">file_obj</tt> <tt class="py-op">=</tt> <tt id="link-62" class="py-name"><a title="fabio.fabioutils.deconstruct_filename" class="py-name" href="#" onclick="return doclink('link-62', 'deconstruct_filename', 'link-2');">deconstruct_filename</a></tt><tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">file_obj</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to deconstruct filename"</tt><tt class="py-op">)</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">file_obj</tt><tt class="py-op">.</tt><tt class="py-name">format</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt>\ </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt id="link-63" class="py-name"><a title="fabio.file_series.file_series.len" class="py-name" href="#" onclick="return doclink('link-63', 'len', 'link-29');">len</a></tt><tt class="py-op">(</tt><tt class="py-name">file_obj</tt><tt class="py-op">.</tt><tt class="py-name">format</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-number">1</tt> <tt class="py-keyword">and</tt> \ </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-name">file_obj</tt><tt class="py-op">.</tt><tt class="py-name">format</tt><tt class="py-op">)</tt> <tt class="py-op">!=</tt> <tt class="py-name">type</tt><tt class="py-op">(</tt><tt class="py-op">[</tt><tt class="py-string">"list"</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-comment"># one of OXD/ ADSC - should have got in previous</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"openimage failed on magic bytes & name guess"</tt><tt class="py-op">)</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-name">filetype</tt> <tt class="py-op">=</tt> <tt class="py-name">file_obj</tt><tt class="py-op">.</tt><tt class="py-name">format</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-comment">#UNUSED filenumber = file_obj.num</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt id="link-64" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-64', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-name">error</tt><tt class="py-op">)</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">traceback</tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-name">traceback</tt><tt class="py-op">.</tt><tt class="py-name">print_exc</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Fabio could not identify "</tt> <tt class="py-op">+</tt> <tt class="py-name">filename</tt><tt class="py-op">)</tt> </tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-name">klass_name</tt> <tt class="py-op">=</tt> <tt class="py-string">""</tt><tt class="py-op">.</tt><tt class="py-name">join</tt><tt class="py-op">(</tt><tt class="py-name">filetype</tt><tt class="py-op">)</tt> <tt class="py-op">+</tt> <tt class="py-string">'image'</tt> </tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-name">module</tt> <tt class="py-op">=</tt> <tt class="py-name">sys</tt><tt class="py-op">.</tt><tt class="py-name">modules</tt><tt class="py-op">.</tt><tt class="py-name">get</tt><tt class="py-op">(</tt><tt class="py-string">"fabio."</tt> <tt class="py-op">+</tt> <tt class="py-name">klass_name</tt><tt class="py-op">,</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">module</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">module</tt><tt class="py-op">,</tt> <tt class="py-name">klass_name</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-name">klass</tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt class="py-name">module</tt><tt class="py-op">,</tt> <tt class="py-name">klass_name</tt><tt class="py-op">)</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Module %s has no image class"</tt> <tt class="py-op">%</tt> <tt class="py-name">module</tt><tt class="py-op">)</tt> </tt>
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Filetype not known %s %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">filename</tt><tt class="py-op">,</tt> <tt class="py-name">klass_name</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-name">obj</tt> <tt class="py-op">=</tt> <tt class="py-name">klass</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-comment"># skip the read for read header</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">obj</tt> </tt>
-</div><a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- checkCookie();
- // -->
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-</html>
diff --git a/doc/html/fabio.pilatusimage-module.html b/doc/html/fabio.pilatusimage-module.html
deleted file mode 100644
index 4e54255..0000000
--- a/doc/html/fabio.pilatusimage-module.html
+++ /dev/null
@@ -1,172 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.pilatusimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
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- bgcolor="#a0c0ff" cellspacing="0">
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- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module pilatusimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.pilatusimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module pilatusimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.pilatusimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:henning.sorensen at risoe.dk
-
- + (mods for fabio) Jon Wright, ESRF
-marccdimage can read MarCCD and MarMosaic images including header info.
-
-JPW : Use a parser in case of typos (sorry?)
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
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- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.pilatusimage.pilatusimage-class.html" class="summary-name">pilatusimage</a><br />
- Read in Pilatus format, also pilatus images, including header info
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
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- ><span class="options">[<a href="#section-Variables"
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- >hide private</a>]</span></td>
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- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
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-</table>
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- checkCookie();
- // -->
-</script>
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- <a href="fabio-module.html">Package fabio</a> ::
- Module pilatusimage
- </span>
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- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
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- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.pilatusimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
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-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.pilatusimage-module.html">Module fabio.pilatusimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"><tt class="py-docstring"> email:henning.sorensen at risoe.dk</tt> </tt>
-<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt class="py-docstring"> + (mods for fabio) Jon Wright, ESRF</tt> </tt>
-<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"><tt class="py-docstring">marccdimage can read MarCCD and MarMosaic images including header info.</tt> </tt>
-<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"><tt class="py-docstring">JPW : Use a parser in case of typos (sorry?)</tt> </tt>
-<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"> </tt>
-<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> </tt>
-<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"><tt class="py-comment"># Base this on the tifimage (as Pilatus is tiff with a </tt> </tt>
-<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"><tt class="py-comment"># tiff header </tt> </tt>
-<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> </tt>
-<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-0" class="py-name" targets="Package fabio=fabio-module.html"><a title="fabio" class="py-name" href="#" onclick="return doclink('link-0', 'fabio', 'link-0');">fabio</a></tt><tt class="py-op">.</tt><tt id="link-1" class="py-name" targets="Module fabio.tifimage=fabio.tifimage-module.html,Class fabio.tifimage.tifimage=fabio.tifimage.tifimage-class.html"><a title="fabio.tifimage
-fabio.tifimage.tifimage" class="py-name" href="#" onclick="return doclink('link-1', 'tifimage', 'link-1');">tifimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.tifimage
-fabio.tifimage.tifimage" class="py-name" href="#" onclick="return doclink('link-2', 'tifimage', 'link-1');">tifimage</a></tt> </tt>
-<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> </tt>
-<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> </tt>
-<a name="pilatusimage"></a><div id="pilatusimage-def"><a name="L26"></a><tt class="py-lineno">26</tt> <a class="py-toggle" href="#" id="pilatusimage-toggle" onclick="return toggle('pilatusimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.pilatusimage.pilatusimage-class.html">pilatusimage</a><tt class="py-op">(</tt><tt class="py-base-class">tifimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="pilatusimage-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="pilatusimage-expanded"><a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt class="py-docstring">""" Read in Pilatus format, also </tt> </tt>
-<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"><tt class="py-docstring"> pilatus images, including header info """</tt> </tt>
-<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> </tt>
-<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"> </tt>
-<a name="pilatusimage._readheader"></a><div id="pilatusimage._readheader-def"><a name="L31"></a><tt class="py-lineno">31</tt> <a class="py-toggle" href="#" id="pilatusimage._readheader-toggle" onclick="return toggle('pilatusimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pilatusimage.pilatusimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt cl [...]
-</div><div id="pilatusimage._readheader-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="pilatusimage._readheader-expanded"><a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"><tt class="py-docstring"> Parser based approach</tt> </tt>
-<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"><tt class="py-docstring"> Gets all entries</tt> </tt>
-<a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"> </tt>
-<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-3" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-3', 'header', 'link-3');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"> </tt>
-<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt class="py-comment"># infile = open(infile)</tt> </tt>
-<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"> <tt class="py-name">hstr</tt> <tt class="py-op">=</tt> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-4" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage. [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-4', 'read', 'link-4');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">4096</tt><tt class="py-op">)</tt> </tt>
-<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"> <tt class="py-comment"># well not very pretty - but seems to find start of </tt> </tt>
-<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"> <tt class="py-comment"># header information</tt> </tt>
-<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">hstr</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'# '</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-5" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-5', 'header', 'link-3');">header</a></tt> </tt>
-<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"> </tt>
-<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"> <tt class="py-name">hstr</tt> <tt class="py-op">=</tt> <tt class="py-name">hstr</tt><tt class="py-op">[</tt><tt class="py-name">hstr</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt class="py-string">'# '</tt><tt class="py-op">)</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"> <tt class="py-name">hstr</tt> <tt class="py-op">=</tt> <tt class="py-name">hstr</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-name">hstr</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt class="py-string">'\x00'</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"> <tt class="py-name">hstr</tt> <tt class="py-op">=</tt> <tt class="py-name">hstr</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">'#'</tt><tt class="py-op">)</tt> </tt>
-<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"> <tt class="py-name">go_on</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-name">go_on</tt><tt class="py-op">:</tt> </tt>
-<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"> <tt class="py-name">hstr</tt><tt class="py-op">.</tt><tt class="py-name">remove</tt><tt class="py-op">(</tt><tt class="py-string">''</tt><tt class="py-op">)</tt> </tt>
-<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">:</tt> </tt>
-<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> <tt class="py-name">go_on</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> </tt>
-<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">line</tt> <tt class="py-keyword">in</tt> <tt class="py-name">hstr</tt><tt class="py-op">:</tt> </tt>
-<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> <tt class="py-name">line</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">index</tt><tt class="py-op">(</tt><tt class="py-string">'\r\n'</tt><tt class="py-op">)</tt><tt class="py-op">]</tt> </tt>
-<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">':'</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> <tt class="py-name">dump</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">':'</tt><tt class="py-op">)</tt> </tt>
-<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-6" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-6', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">dump</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt c [...]
-<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">'='</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"> <tt class="py-name">dump</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">'='</tt><tt class="py-op">)</tt> </tt>
-<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-7', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">dump</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt c [...]
-<a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">' '</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"> <tt id="link-8" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-8', 'i', 'link-8');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">' '</tt><tt class="py-op">)</tt> </tt>
-<a name="L66"></a><tt class="py-lineno">66</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-9', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">line</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt id="link-10" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href [...]
-<a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">','</tt><tt class="py-op">)</tt> <tt class="py-op">></tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">:</tt> </tt>
-<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"> <tt class="py-name">dump</tt> <tt class="py-op">=</tt> <tt class="py-name">line</tt><tt class="py-op">.</tt><tt class="py-name">split</tt><tt class="py-op">(</tt><tt class="py-string">','</tt><tt class="py-op">)</tt> </tt>
-<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-12', 'header', 'link-3');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">dump</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt [...]
-<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"> </tt>
-<a name="L71"></a><tt class="py-lineno">71</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-13', 'header', 'link-3');">header</a></tt> </tt>
-</div><a name="L72"></a><tt class="py-lineno">72</tt> <tt class="py-line"> </tt>
-<a name="L73"></a><tt class="py-lineno">73</tt> <tt class="py-line"> </tt>
-<a name="L74"></a><tt class="py-lineno">74</tt> <tt class="py-line"> </tt>
-<a name="pilatusimage._read"></a><div id="pilatusimage._read-def"><a name="L75"></a><tt class="py-lineno">75</tt> <a class="py-toggle" href="#" id="pilatusimage._read-toggle" onclick="return toggle('pilatusimage._read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pilatusimage.pilatusimage-class.html#_read">_read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class=" [...]
-</div><div id="pilatusimage._read-collapsed" style="display:none;" pad="++" indent="++++++++"></div><div id="pilatusimage._read-expanded"><a name="L76"></a><tt class="py-lineno">76</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L77"></a><tt class="py-lineno">77</tt> <tt class="py-line"><tt class="py-docstring"> inherited from tifimage</tt> </tt>
-<a name="L78"></a><tt class="py-lineno">78</tt> <tt class="py-line"><tt class="py-docstring"> ... a Pilatus image *is a* tif image</tt> </tt>
-<a name="L79"></a><tt class="py-lineno">79</tt> <tt class="py-line"><tt class="py-docstring"> just with a header</tt> </tt>
-<a name="L80"></a><tt class="py-lineno">80</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L81"></a><tt class="py-lineno">81</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-14" class="py-name"><a title="fabio.tifimage
-fabio.tifimage.tifimage" class="py-name" href="#" onclick="return doclink('link-14', 'tifimage', 'link-1');">tifimage</a></tt><tt class="py-op">.</tt><tt id="link-15" class="py-name"><a title="fabio.GEimage.GEimage.read
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-15', 'read', 'link-4');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L82"></a><tt class="py-lineno">82</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:28 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
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-
-<script type="text/javascript">
- <!--
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- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.pilatusimage.pilatusimage-class.html b/doc/html/fabio.pilatusimage.pilatusimage-class.html
deleted file mode 100644
index 6e0da47..0000000
--- a/doc/html/fabio.pilatusimage.pilatusimage-class.html
+++ /dev/null
@@ -1,367 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.pilatusimage.pilatusimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.pilatusimage-module.html">Module pilatusimage</a> ::
- Class pilatusimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.pilatusimage.pilatusimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class pilatusimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.pilatusimage-pysrc.html#pilatusimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <a href="fabio.tifimage.tifimage-class.html">tifimage.tifimage</a> --+
- |
- <strong class="uidshort">pilatusimage</strong>
-</pre>
-
-<hr />
-<p>Read in Pilatus format, also pilatus images, including header info</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.pilatusimage.pilatusimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Parser based approach Gets all entries</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pilatusimage-pysrc.html#pilatusimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.pilatusimage.pilatusimage-class.html#_read" class="summary-sig-name" onclick="show_private();">_read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- inherited from tifimage ...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pilatusimage-pysrc.html#pilatusimage._read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.tifimage.tifimage-class.html">tifimage.tifimage</a></code></b>:
- <code><a href="fabio.tifimage.tifimage-class.html#__init__">__init__</a></code>,
- <code><a href="fabio.tifimage.tifimage-class.html#read">read</a></code>,
- <code><a href="fabio.tifimage.tifimage-class.html#write">write</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.tifimage.tifimage-class.html">tifimage.tifimage</a></code></b> (private):
- <code><a href="fabio.tifimage.tifimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.pilatusimage-pysrc.html#pilatusimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Parser based approach Gets all entries</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_read"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.pilatusimage-pysrc.html#pilatusimage._read">source code</a></span>
- </td>
- </tr></table>
-
- <p>inherited from tifimage ... a Pilatus image *is a* tif image just with
- a header</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.pnmimage-module.html b/doc/html/fabio.pnmimage-module.html
deleted file mode 100644
index d8af4e1..0000000
--- a/doc/html/fabio.pnmimage-module.html
+++ /dev/null
@@ -1,231 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.pnmimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module pnmimage
- </span>
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- <td>
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- <!-- hide/show private -->
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- onclick="toggle_private();">hide private</a>]</span></td></tr>
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- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.pnmimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
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-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module pnmimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.pnmimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-
-Authors: Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:henning.sorensen at risoe.dk
-
-</pre>
-
-<!-- ==================== CLASSES ==================== -->
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-<table class="summary" border="1" cellpadding="3"
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- <a href="fabio.pnmimage.pnmimage-class.html" class="summary-name">pnmimage</a>
- </td>
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-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
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- <td align="left"><span class="table-header">Variables</span></td>
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- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("pnmimage")">logging.getLogger("pnmimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="SUBFORMATS"></a><span class="summary-name">SUBFORMATS</span> = <code title="['P1', 'P2', 'P3', 'P4', 'P5', 'P6', 'P7']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">P1</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">P2</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable- [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="HEADERITEMS"></a><span class="summary-name">HEADERITEMS</span> = <code title="['SUBFORMAT', 'DIMENSIONS', 'MAXVAL']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">SUBFORMAT</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">DIMENSIONS</code><code class="variable-quote">'</code><code class="variable-op">, </code><code clas [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.pnmimage-module.html#P7HEADERITEMS" class="summary-name">P7HEADERITEMS</a> = <code title="['WIDTH', 'HEIGHT', 'DEPTH', 'MAXVAL', 'TUPLTYPE', 'ENDHDR']"><code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">WIDTH</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">HEIGHT</code><code class="variable-quote">'</code><code class= [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
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- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
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- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
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- </td>
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-</table>
-<a name="P7HEADERITEMS"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">P7HEADERITEMS</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">[</code><code class="variable-quote">'</code><code class="variable-string">WIDTH</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">HEIGHT</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">DEPTH</code><code class="variable-quote">'</code><code class="variable-op">, </code>< [...]
-</pre></td></tr></table>
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diff --git a/doc/html/fabio.pnmimage-pysrc.html b/doc/html/fabio.pnmimage-pysrc.html
deleted file mode 100644
index 7e461ae..0000000
--- a/doc/html/fabio.pnmimage-pysrc.html
+++ /dev/null
@@ -1,487 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
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- <a href="fabio-module.html">Package fabio</a> ::
- Module pnmimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
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- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.pnmimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.pnmimage-module.html">Module fabio.pnmimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">Authors: Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"> email:henning.sorensen at risoe.dk</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"pnmimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt id="link-3" class="py-name" targets="Variable fabio.pnmimage.SUBFORMATS=fabio.pnmimage-module.html#SUBFORMATS"><a title="fabio.pnmimage.SUBFORMATS" class="py-name" href="#" onclick="return doclink('link-3', 'SUBFORMATS', 'link-3');">SUBFORMATS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">'P1'</tt><tt class="py-op">,</tt> <tt class="py-string">'P2'</tt><tt class="py-op">,</tt> <tt [...]
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt id="link-4" class="py-name" targets="Variable fabio.pnmimage.HEADERITEMS=fabio.pnmimage-module.html#HEADERITEMS"><a title="fabio.pnmimage.HEADERITEMS" class="py-name" href="#" onclick="return doclink('link-4', 'HEADERITEMS', 'link-4');">HEADERITEMS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">'SUBFORMAT'</tt><tt class="py-op">,</tt> <tt class="py-string">'DIMENSIONS'</tt><tt class [...]
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt id="link-5" class="py-name" targets="Variable fabio.pnmimage.P7HEADERITEMS=fabio.pnmimage-module.html#P7HEADERITEMS"><a title="fabio.pnmimage.P7HEADERITEMS" class="py-name" href="#" onclick="return doclink('link-5', 'P7HEADERITEMS', 'link-5');">P7HEADERITEMS</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">'WIDTH'</tt><tt class="py-op">,</tt> <tt class="py-string">'HEIGHT'</tt><tt cla [...]
-<a name="pnmimage"></a><div id="pnmimage-def"><a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <a class="py-toggle" href="#" id="pnmimage-toggle" onclick="return toggle('pnmimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html">pnmimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="pnmimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="pnmimage-expanded"><a name="pnmimage.__init__"></a><div id="pnmimage.__init__-def"><a name="L24"></a><tt class="py-lineno"> 24</tt> <a class="py-toggle" href="#" id="pnmimage.__init__-toggle" onclick="return toggle('pnmimage.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#__init__">__init__</a><tt class=" [...]
-</div><div id="pnmimage.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.__init__-expanded"><a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt id="link-6" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-6', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage.__ini [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-7', '__init__', 'link-7');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-name">arg</tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">kwargs</tt><tt class="py-op">)</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt class="py-name">fun</tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt id="link-8" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-8', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">,</tt> <tt class="py-string">'__init__'</tt><tt class="py-op">,</tt> <tt class="py-keyword">lambda</tt> <tt class="py-name">x</tt><tt class="py-op">:</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-name">fun</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">)</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-9" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-9', 'data', 'link-9');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-10', 'header', 'link-10');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-string">'Subformat'</tt><tt clas [...]
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-11', 'dim1', 'link-11');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py- [...]
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">m</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">maxval</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">stddev</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">minval</tt> <tt [...]
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Variable fabio.edfimage.edfimage.header_keys=fabio.edfimage.edfimage-class.html#header_keys"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-13', 'header_keys', 'link-13');">header_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op [...]
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-15', 'bytecode', 'link-15');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> </tt>
-<a name="pnmimage._readheader"></a><div id="pnmimage._readheader-def"><a name="L35"></a><tt class="py-lineno"> 35</tt> <a class="py-toggle" href="#" id="pnmimage._readheader-toggle" onclick="return toggle('pnmimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">f</tt><t [...]
-</div><div id="pnmimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage._readheader-expanded"><a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-comment">#pnm images have a 3-line header but ignore lines starting with '#'</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-comment">#1st line contains the pnm image sub format</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-comment">#2nd line contains the image pixel dimension</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-comment">#3rd line contains the maximum pixel value (at least for grayscale - check this)</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-16', 'header_keys', 'link-13');">header_keys</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">'SUBFORMAT'</tt><tt class="py-op">,</tt> <tt class="py-string">'DIMENSIONS'</tt><tt class="py-op">,</ [...]
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">l</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt id="link-17" class="py-name"><a title="fabio.pnmimage.SUBFORMATS" class="py-name" href="#" onclick="return doclink('link-17', 'SUBFORMATS', 'link-3');">SUBFORMATS</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'unknown subformat of pnm: %s'</tt> <tt class="py-op">%</tt> <tt class="py-name">l</tt><tt class="py-op">)</tt> </tt>
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-18" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-18', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'SUBFORMAT'</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">l</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-19', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'SUBFORMAT'</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'P7'</tt><tt class="py [...]
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-20', 'header_keys', 'link-13');">header_keys</a></tt> <tt class="py-op">=</tt> <tt id="link-21" class="py-name"><a title="fabio.pnmimage.P7HEADERITEMS" class="py-name" href="#" onclick="return doclink('link-21', 'P7HEADERI [...]
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-comment">#this one has a special header</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-string">'ENDHDR'</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt class="py-name">l</tt><tt class="py-op">:</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-keyword">while</tt><tt class="py-op">(</tt><tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'#'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt cl [...]
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-name">s</tt> <tt class="py-op">=</tt> <tt class="py-name">l</tt><tt class="py-op">.</tt><tt class="py-name">lsplit</tt><tt class="py-op">(</tt><tt class="py-string">' '</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">s</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-keyword">not</tt> <tt class="py-keyword">in</tt> <tt id="link-22" class="py-name"><a title="fabio.pnmimage.P7HEADERITEMS" class="py-name" href="#" onclick="return doclink('link-22', 'P7HEADERITEMS', 'link-5');">P7HEADERITEMS</a></tt><tt class="py-op">:</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-string">'Illegal pam (netpnm p7) headeritem %s'</tt> <tt class="py-op">%</tt> <tt class="py-name">s</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">)</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-23', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">s</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt [...]
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-24', 'header_keys', 'link-13');">header_keys</a></tt> <tt class="py-op">=</tt> <tt id="link-25" class="py-name"><a title="fabio.pnmimage.HEADERITEMS" class="py-name" href="#" onclick="return doclink('link-25', 'HEADERITEMS [...]
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">k</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name"><a title="fabio.edfimage.edfimage.header_keys" class="py-name" href="#" onclick="return doclink('link-26', 'header_keys', 'link-13');">header_keys</a></tt><tt class="py-op">[</tt><tt class="py-number">1</tt><tt class="py-op">:</tt><tt [...]
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-keyword">while</tt><tt class="py-op">(</tt><tt class="py-name">l</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'#'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">f</tt><tt class="py-op">.</tt><tt class="py-name">readline</tt><tt cl [...]
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-27', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">k</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">l</tt><tt class="py-op">.</tt><tt class="py-name">strip</tt> [...]
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-comment">#set the dimensions</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt id="link-28" class="py-name" targets="Variable fabio.edfimage.edfimage.dims=fabio.edfimage.edfimage-class.html#dims"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-28', 'dims', 'link-28');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name"><a title="fabio.edfimag [...]
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-30" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-30', 'dim1', 'link-11');">dim1</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return do [...]
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-comment">#figure out how many bytes are used to store the data</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-comment">#case construct here!</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-name">m</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-34', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'MAXVAL'</tt><tt class="py-op">]</tt>< [...]
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">m</tt> <tt class="py-op"><</tt> <tt class="py-number">256</tt><tt class="py-op">:</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-35', 'bytecode', 'link-15');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">m</tt> <tt class="py-op"><</tt> <tt class="py-number">65536</tt><tt class="py-op">:</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-36', 'bytecode', 'link-15');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">m</tt> <tt class="py-op"><</tt> <tt class="py-number">2147483648L</tt><tt class="py-op">:</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-37', 'bytecode', 'link-15');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt id="link-38" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-38', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">'32-bit pixels are not really supported by the netpgm standard'</tt><tt class="py-op">)</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">'could not figure out what kind of pixels you have'</tt> </tt>
-</div><a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> </tt>
-<a name="pnmimage.read"></a><div id="pnmimage.read-def"><a name="L81"></a><tt class="py-lineno"> 81</tt> <a class="py-toggle" href="#" id="pnmimage.read-toggle" onclick="return toggle('pnmimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py-p [...]
-</div><div id="pnmimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.read-expanded"><a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"><tt class="py-docstring"> try to read PNM images</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"><tt class="py-docstring"> @param fname: name of the file</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"><tt class="py-docstring"> @param frame: not relevant here! PNM is always single framed</tt> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-39" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-39', 'header', 'link-10');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-40" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-40', 'resetvals', 'link-40');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-41', '_open', 'link-41');">_open</a></tt><tt class="py-op">(</tt><tt clas [...]
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._rea [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-42', '_readheader', 'link-42');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-comment">#read the image data</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> <tt class="py-name">decoder_name</tt> <tt class="py-op">=</tt> <tt class="py-string">"%sdec"</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-43" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-43', 'header', 'link-10');">header</a></tt><tt class="py-op">[</tt><tt class="py-string">'SUBFORMAT'</tt><tt [...]
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">decoder_name</tt> <tt class="py-keyword">in</tt> <tt class="py-name">dir</tt><tt class="py-op">(</tt><tt id="link-44" class="py-name" targets="Module fabio.pnmimage=fabio.pnmimage-module.html,Class fabio.pnmimage.pnmimage=fabio.pnmimage.pnmimage-class.html"><a title="fabio.pnmimage
-fabio.pnmimage.pnmimage" class="py-name" href="#" onclick="return doclink('link-44', 'pnmimage', 'link-44');">pnmimage</a></tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-name">decoder</tt> <tt class="py-op">=</tt> <tt class="py-name">getattr</tt><tt class="py-op">(</tt><tt id="link-45" class="py-name"><a title="fabio.pnmimage
-fabio.pnmimage.pnmimage" class="py-name" href="#" onclick="return doclink('link-45', 'pnmimage', 'link-44');">pnmimage</a></tt><tt class="py-op">,</tt> <tt class="py-name">decoder_name</tt><tt class="py-op">)</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-46" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-46', 'data', 'link-9');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">decoder</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-47', 'bytecode', 'link-15');">bytecode</a></tt [...]
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">(</tt><tt class="py-string">"No decoder named %s for file %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">decoder_name</tt><tt class="py-op">,</tt> <tt class="py-name">fname</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-48', 'resetvals', 'link-40');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="pnmimage.P1dec"></a><div id="pnmimage.P1dec-def"><a name="L103"></a><tt class="py-lineno">103</tt> <a class="py-toggle" href="#" id="pnmimage.P1dec-toggle" onclick="return toggle('pnmimage.P1dec');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#P1dec">P1dec</a><tt class="py-op">(</tt><tt class="py-param">buf</tt><tt class="py-op">,</tt> <tt class="py-param">bytecode</tt><tt class="py-op">)</tt><tt cla [...]
-</div><div id="pnmimage.P1dec-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.P1dec-expanded"><a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt id="link-49" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-49', 'data', 'link-9');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-50', 'dim2', 'link-12');">dim2 [...]
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt id="link-52" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-52', 'i', 'link-52');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">l</tt> <tt class="py-keyword">in</tt> <tt class="py-name">buf</tt><tt class="py-op">.</tt><tt class="py-name">readlines</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt id="link-53" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-53', 'data', 'link-9');">data</a></tt><tt class="py-op">[</tt><tt id="link-54" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-54', 'i', 'link-52');">i</a></tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class=" [...]
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">'Size spec in pnm-header does not match size of image data field'</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-56" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-56', 'data', 'link-9');">data</a></tt> </tt>
-</div><a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="pnmimage.P4dec"></a><div id="pnmimage.P4dec-def"><a name="L114"></a><tt class="py-lineno">114</tt> <a class="py-toggle" href="#" id="pnmimage.P4dec-toggle" onclick="return toggle('pnmimage.P4dec');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#P4dec">P4dec</a><tt class="py-op">(</tt><tt class="py-param">buf</tt><tt class="py-op">,</tt> <tt class="py-param">bytecode</tt><tt class="py-op">)</tt><tt cla [...]
-</div><div id="pnmimage.P4dec-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.P4dec-expanded"><a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-name">err</tt> <tt class="py-op">=</tt> <tt class="py-string">'single bit (pbm) images are not supported - yet'</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt id="link-57" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-57', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">)</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">NotImplementedError</tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="pnmimage.P2dec"></a><div id="pnmimage.P2dec-def"><a name="L120"></a><tt class="py-lineno">120</tt> <a class="py-toggle" href="#" id="pnmimage.P2dec-toggle" onclick="return toggle('pnmimage.P2dec');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#P2dec">P2dec</a><tt class="py-op">(</tt><tt class="py-param">buf</tt><tt class="py-op">,</tt> <tt class="py-param">bytecode</tt><tt class="py-op">)</tt><tt cla [...]
-</div><div id="pnmimage.P2dec-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.P2dec-expanded"><a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt id="link-58" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-58', 'data', 'link-9');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">zeros</tt><tt class="py-op">(</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-59" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-59', 'dim2', 'link-12');">dim2 [...]
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt id="link-61" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-61', 'i', 'link-52');">i</a></tt> <tt class="py-op">=</tt> <tt class="py-number">0</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">l</tt> <tt class="py-keyword">in</tt> <tt class="py-name">buf</tt><tt class="py-op">.</tt><tt class="py-name">readlines</tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt id="link-62" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-62', 'data', 'link-9');">data</a></tt><tt class="py-op">[</tt><tt id="link-63" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-63', 'i', 'link-52');">i</a></tt><tt class="py-op">,</tt> <tt class="py-op">:</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class=" [...]
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">'Size spec in pnm-header does not match size of image data field'</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-65" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-65', 'data', 'link-9');">data</a></tt> </tt>
-</div><a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="pnmimage.P5dec"></a><div id="pnmimage.P5dec-def"><a name="L131"></a><tt class="py-lineno">131</tt> <a class="py-toggle" href="#" id="pnmimage.P5dec-toggle" onclick="return toggle('pnmimage.P5dec');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#P5dec">P5dec</a><tt class="py-op">(</tt><tt class="py-param">buf</tt><tt class="py-op">,</tt> <tt class="py-param">bytecode</tt><tt class="py-op">)</tt><tt cla [...]
-</div><div id="pnmimage.P5dec-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.P5dec-expanded"><a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-name">l</tt> <tt class="py-op">=</tt> <tt class="py-name">buf</tt><tt class="py-op">.</tt><tt id="link-66" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEim [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-66', 'read', 'link-66');">read</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt id="link-67" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-67', 'data', 'link-9');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">l</tt><tt class="py-op">,</tt> <tt id="link-68" class="py-name"><a title="fabio.edfimage.edfimage.by [...]
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">:</tt> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">,</tt> <tt class="py-string">'Size spec in pnm-header does not match size of image data field'</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-71" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-71', 'data', 'link-9');">data</a></tt> </tt>
-</div><a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="pnmimage.P3dec"></a><div id="pnmimage.P3dec-def"><a name="L140"></a><tt class="py-lineno">140</tt> <a class="py-toggle" href="#" id="pnmimage.P3dec-toggle" onclick="return toggle('pnmimage.P3dec');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#P3dec">P3dec</a><tt class="py-op">(</tt><tt class="py-param">buf</tt><tt class="py-op">,</tt> <tt class="py-param">bytecode</tt><tt class="py-op">)</tt><tt cla [...]
-</div><div id="pnmimage.P3dec-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.P3dec-expanded"><a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-name">err</tt> <tt class="py-op">=</tt> <tt class="py-string">'(plain-ppm) RGB images are not supported - yet'</tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt id="link-72" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-72', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">)</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">NotImplementedError</tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="pnmimage.P6dec"></a><div id="pnmimage.P6dec-def"><a name="L146"></a><tt class="py-lineno">146</tt> <a class="py-toggle" href="#" id="pnmimage.P6dec-toggle" onclick="return toggle('pnmimage.P6dec');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#P6dec">P6dec</a><tt class="py-op">(</tt><tt class="py-param">buf</tt><tt class="py-op">,</tt> <tt class="py-param">bytecode</tt><tt class="py-op">)</tt><tt cla [...]
-</div><div id="pnmimage.P6dec-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.P6dec-expanded"><a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-name">err</tt> <tt class="py-op">=</tt> <tt class="py-string">'(ppm) RGB images are not supported - yet'</tt> </tt>
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt id="link-73" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-73', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">)</tt> </tt>
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">NotImplementedError</tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="pnmimage.P7dec"></a><div id="pnmimage.P7dec-def"><a name="L152"></a><tt class="py-lineno">152</tt> <a class="py-toggle" href="#" id="pnmimage.P7dec-toggle" onclick="return toggle('pnmimage.P7dec');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#P7dec">P7dec</a><tt class="py-op">(</tt><tt class="py-param">buf</tt><tt class="py-op">,</tt> <tt class="py-param">bytecode</tt><tt class="py-op">)</tt><tt cla [...]
-</div><div id="pnmimage.P7dec-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.P7dec-expanded"><a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-name">err</tt> <tt class="py-op">=</tt> <tt class="py-string">'(pam) images are not supported - yet'</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt id="link-74" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-74', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">)</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">NotImplementedError</tt><tt class="py-op">(</tt><tt class="py-name">err</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> </tt>
-<a name="pnmimage.write"></a><div id="pnmimage.write-def"><a name="L157"></a><tt class="py-lineno">157</tt> <a class="py-toggle" href="#" id="pnmimage.write-toggle" onclick="return toggle('pnmimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">filename</tt><tt class="py-op">)</tt><tt cl [...]
-</div><div id="pnmimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.write-expanded"><a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">NotImplementedError</tt><tt class="py-op">(</tt><tt class="py-string">'write pnm images is not implemented yet.'</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-decorator">@</tt><tt class="py-decorator">staticmethod</tt> </tt>
-<a name="pnmimage.checkData"></a><div id="pnmimage.checkData-def"><a name="L161"></a><tt class="py-lineno">161</tt> <a class="py-toggle" href="#" id="pnmimage.checkData-toggle" onclick="return toggle('pnmimage.checkData');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.pnmimage.pnmimage-class.html#checkData">checkData</a><tt class="py-op">(</tt><tt class="py-param">data</tt><tt class="py-op">=</tt><tt class="py-name">None</tt><tt class="p [...]
-</div><div id="pnmimage.checkData-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="pnmimage.checkData-expanded"><a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt id="link-75" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-75', 'data', 'link-9');">data</a></tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L163"></a><tt class="py-lineno">163</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">None</tt> </tt>
-<a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt id="link-76" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-76', 'data', 'link-9');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">astype</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">)</tt> </tt>
-</div></div><a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.pnmimage.pnmimage-class.html b/doc/html/fabio.pnmimage.pnmimage-class.html
deleted file mode 100644
index 6fed9bc..0000000
--- a/doc/html/fabio.pnmimage.pnmimage-class.html
+++ /dev/null
@@ -1,614 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.pnmimage.pnmimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.pnmimage-module.html">Module pnmimage</a> ::
- Class pnmimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.pnmimage.pnmimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class pnmimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">pnmimage</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.pnmimage.pnmimage-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">*arg</span>,
- <span class="summary-sig-arg">**kwargs</span>)</span><br />
- Set up initial values</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.pnmimage.pnmimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">f</span>)</span><br />
- Must be overridden in classes</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.pnmimage.pnmimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- try to read PNM images</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.pnmimage.pnmimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">filename</span>)</span><br />
- To be overwritten - write the file</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
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- >hide private</a>]</span></td>
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- <td><span class="summary-sig"><a name="P1dec"></a><span class="summary-sig-name">P1dec</span>(<span class="summary-sig-arg">buf</span>,
- <span class="summary-sig-arg">bytecode</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.P1dec">source code</a></span>
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- <span class="summary-sig-arg">bytecode</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.P4dec">source code</a></span>
-
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-
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- <td><span class="summary-sig"><a name="P2dec"></a><span class="summary-sig-name">P2dec</span>(<span class="summary-sig-arg">buf</span>,
- <span class="summary-sig-arg">bytecode</span>)</span></td>
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- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.P2dec">source code</a></span>
-
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- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="P5dec"></a><span class="summary-sig-name">P5dec</span>(<span class="summary-sig-arg">buf</span>,
- <span class="summary-sig-arg">bytecode</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.P5dec">source code</a></span>
-
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- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="P3dec"></a><span class="summary-sig-name">P3dec</span>(<span class="summary-sig-arg">buf</span>,
- <span class="summary-sig-arg">bytecode</span>)</span></td>
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- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.P3dec">source code</a></span>
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- <td><span class="summary-sig"><a name="P6dec"></a><span class="summary-sig-name">P6dec</span>(<span class="summary-sig-arg">buf</span>,
- <span class="summary-sig-arg">bytecode</span>)</span></td>
- <td align="right" valign="top">
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-
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- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="P7dec"></a><span class="summary-sig-name">P7dec</span>(<span class="summary-sig-arg">buf</span>,
- <span class="summary-sig-arg">bytecode</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.P7dec">source code</a></span>
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-
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-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.pnmimage.pnmimage-class.html#checkData" class="summary-sig-name">checkData</a>(<span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>)</span><br />
- Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.checkData">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
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- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
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- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
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- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">*arg</span>,
- <span class="sig-arg">**kwargs</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Set up initial values</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
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- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">f</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Must be overridden in classes</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>try to read PNM images</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>fname</code></strong> - name of the file</li>
- <li><strong class="pname"><code>frame</code></strong> - not relevant here! PNM is always single framed</li>
- </ul></dd>
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">filename</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>To be overwritten - write the file</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="checkData"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">checkData</span>(<span class="sig-arg">data</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">Static Method</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.pnmimage-pysrc.html#pnmimage.checkData">source code</a></span>
- </td>
- </tr></table>
-
- <p>Empty for fabioimage but may be populated by others classes,
- especially for format accepting only integers</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#checkData">fabioimage.fabioimage.checkData</a>
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
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diff --git a/doc/html/fabio.readbytestream-module.html b/doc/html/fabio.readbytestream-module.html
deleted file mode 100644
index d6d827e..0000000
--- a/doc/html/fabio.readbytestream-module.html
+++ /dev/null
@@ -1,312 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.readbytestream</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
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- alink="#204080">
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- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module readbytestream
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.readbytestream-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module readbytestream</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.readbytestream-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Reads a bytestream
-
-Authors: Jon Wright Henning O. Sorensen & Erik Knudsen
- ESRF Risoe National Laboratory
-
-</pre>
-
-<!-- ==================== FUNCTIONS ==================== -->
-<a name="section-Functions"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Functions</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Functions"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.readbytestream-module.html#readbytestream" class="summary-sig-name">readbytestream</a>(<span class="summary-sig-arg">fil</span>,
- <span class="summary-sig-arg">offset</span>,
- <span class="summary-sig-arg">x</span>,
- <span class="summary-sig-arg">y</span>,
- <span class="summary-sig-arg">nbytespp</span>,
- <span class="summary-sig-arg">datatype</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">int</code><code class="variable-quote">'</code></span>,
- <span class="summary-sig-arg">signed</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">n</code><code class="variable-quote">'</code></span>,
- <span class="summary-sig-arg">swap</span>=<span class="summary-sig-default"><code class="variable-quote">'</code><code class="variable-string">n</code><code class="variable-quote">'</code></span>,
- <span class="summary-sig-arg">typeout</span>=<span class="summary-sig-default"><type 'numpy.uint16'></span>)</span><br />
- Reads in a bytestream from a file (which may be a string indicating a
- filename, or an already opened file (should be "rb"))
- offset is the position (in bytes) where the pixel data start nbytespp
- = number of bytes per pixel type can be int or float (4 bytes pp) or
- double (8 bytes pp) signed: normally signed data 'y', but 'n' to try
- to get back the right numbers when unsigned data are converted to
- signed (python once had no unsigned numeric types.) swap, normally do
- not bother, but 'y' to swap bytes typeout is the numpy type to
- output, normally uint16, but more if overflows occurred x and y are
- the pixel dimensions</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.readbytestream-pysrc.html#readbytestream">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("readbytestream")">logging.getLogger("readbytestream")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.readbytestream-module.html#DATATYPES" class="summary-name">DATATYPES</a> = <code title="{('double', 'y', 4): <type 'numpy.float64'>,
- ('float', 'y', 4): <type 'numpy.float32'>,
- ('int', 'n', 1): <type 'numpy.uint8'>,
- ('int', 'n', 2): <type 'numpy.uint16'>,
- ('int', 'n', 4): <type 'numpy.uint32'>,
- ('int', 'y', 1): <type 'numpy.int8'>,
- ('int', 'y', 2): <type 'numpy.int16'>,
- ('int', 'y', 4): <type 'numpy.int32'>}"><code class="variable-group">{</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">double</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">y</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-group">)</code><code class="variable-op">: </code [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== FUNCTION DETAILS ==================== -->
-<a name="section-FunctionDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Function Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-FunctionDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="readbytestream"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">readbytestream</span>(<span class="sig-arg">fil</span>,
- <span class="sig-arg">offset</span>,
- <span class="sig-arg">x</span>,
- <span class="sig-arg">y</span>,
- <span class="sig-arg">nbytespp</span>,
- <span class="sig-arg">datatype</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">int</code><code class="variable-quote">'</code></span>,
- <span class="sig-arg">signed</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">n</code><code class="variable-quote">'</code></span>,
- <span class="sig-arg">swap</span>=<span class="sig-default"><code class="variable-quote">'</code><code class="variable-string">n</code><code class="variable-quote">'</code></span>,
- <span class="sig-arg">typeout</span>=<span class="sig-default"><type 'numpy.uint16'></span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.readbytestream-pysrc.html#readbytestream">source code</a></span>
- </td>
- </tr></table>
-
- <p>Reads in a bytestream from a file (which may be a string indicating a
- filename, or an already opened file (should be "rb")) offset is
- the position (in bytes) where the pixel data start nbytespp = number of
- bytes per pixel type can be int or float (4 bytes pp) or double (8 bytes
- pp) signed: normally signed data 'y', but 'n' to try to get back the
- right numbers when unsigned data are converted to signed (python once had
- no unsigned numeric types.) swap, normally do not bother, but 'y' to swap
- bytes typeout is the numpy type to output, normally uint16, but more if
- overflows occurred x and y are the pixel dimensions</p>
- <p>TODO : Read in regions of interest</p>
- <p>PLEASE LEAVE THE STRANGE INTERFACE ALONE - IT IS USEFUL FOR THE BRUKER
- FORMAT</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="DATATYPES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">DATATYPES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">double</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">y</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-group">)</code><code class="variable-op">: </code><type 'numpy.float64'><code class="varia [...]
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">float</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">y</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-group">)</code><code class="variable-op">: </code><type 'numpy.float32'><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">int</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">n</code><code class="variable-quote">'</code><code class="variable-op">, </code>1<code class="variable-group">)</code><code class="variable-op">: </code><type 'numpy.uint8'><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">int</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">n</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-group">)</code><code class="variable-op">: </code><type 'numpy.uint16'><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">int</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">n</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-group">)</code><code class="variable-op">: </code><type 'numpy.uint32'><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">int</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">y</code><code class="variable-quote">'</code><code class="variable-op">, </code>1<code class="variable-group">)</code><code class="variable-op">: </code><type 'numpy.int8'><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">int</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">y</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-group">)</code><code class="variable-op">: </code><type 'numpy.int16'><code class="variable-op">,</code>
- <code class="variable-group">(</code><code class="variable-quote">'</code><code class="variable-string">int</code><code class="variable-quote">'</code><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">y</code><code class="variable-quote">'</code><code class="variable-op">, </code>4<code class="variable-group">)</code><code class="variable-op">: </code><type 'numpy.int32'><code class="variable-group">}</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
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diff --git a/doc/html/fabio.readbytestream-pysrc.html b/doc/html/fabio.readbytestream-pysrc.html
deleted file mode 100644
index a800676..0000000
--- a/doc/html/fabio.readbytestream-pysrc.html
+++ /dev/null
@@ -1,241 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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- <a href="fabio-module.html">Package fabio</a> ::
- Module readbytestream
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.readbytestream-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
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-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.readbytestream-module.html">Module fabio.readbytestream</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">Reads a bytestream</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">Authors: Jon Wright Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> ESRF Risoe National Laboratory</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L10"></a><tt class="py-lineno">10</tt> <tt class="py-line"> </tt>
-<a name="L11"></a><tt class="py-lineno">11</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt> </tt>
-<a name="L12"></a><tt class="py-lineno">12</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bruk [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"readbytestream"</tt><tt class="py-op">)</tt> </tt>
-<a name="L13"></a><tt class="py-lineno">13</tt> <tt class="py-line"><tt id="link-1" class="py-name" targets="Variable fabio.readbytestream.DATATYPES=fabio.readbytestream-module.html#DATATYPES"><a title="fabio.readbytestream.DATATYPES" class="py-name" href="#" onclick="return doclink('link-1', 'DATATYPES', 'link-1');">DATATYPES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L14"></a><tt class="py-lineno">14</tt> <tt class="py-line"> <tt class="py-comment"># type sign bytes</tt> </tt>
-<a name="L15"></a><tt class="py-lineno">15</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt> <tt class="py-string">'n'</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">,</tt> </tt>
-<a name="L16"></a><tt class="py-lineno">16</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt> <tt class="py-string">'n'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">,</tt> </tt>
-<a name="L17"></a><tt class="py-lineno">17</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt> <tt class="py-string">'n'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint32</tt><tt class="py-op">,</tt> </tt>
-<a name="L18"></a><tt class="py-lineno">18</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt> <tt class="py-string">'y'</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int8</tt><tt class="py-op">,</tt> </tt>
-<a name="L19"></a><tt class="py-lineno">19</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt> <tt class="py-string">'y'</tt><tt class="py-op">,</tt> <tt class="py-number">2</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int16</tt><tt class="py-op">,</tt> </tt>
-<a name="L20"></a><tt class="py-lineno">20</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">"int"</tt><tt class="py-op">,</tt> <tt class="py-string">'y'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> </tt>
-<a name="L21"></a><tt class="py-lineno">21</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'float'</tt><tt class="py-op">,</tt> <tt class="py-string">'y'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt> <tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> <tt class="py-comment"># does this occur in bruker?</tt> </tt>
-<a name="L22"></a><tt class="py-lineno">22</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-string">'double'</tt><tt class="py-op">,</tt> <tt class="py-string">'y'</tt><tt class="py-op">,</tt> <tt class="py-number">4</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float64</tt> </tt>
-<a name="L23"></a><tt class="py-lineno">23</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L24"></a><tt class="py-lineno">24</tt> <tt class="py-line"> </tt>
-<a name="L25"></a><tt class="py-lineno">25</tt> <tt class="py-line"> </tt>
-<a name="readbytestream"></a><div id="readbytestream-def"><a name="L26"></a><tt class="py-lineno">26</tt> <a class="py-toggle" href="#" id="readbytestream-toggle" onclick="return toggle('readbytestream');">-</a><tt class="py-line"><tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.readbytestream-module.html#readbytestream">readbytestream</a><tt class="py-op">(</tt><tt class="py-param">fil</tt><tt class="py-op">,</tt> </tt>
-<a name="L27"></a><tt class="py-lineno">27</tt> <tt class="py-line"> <tt class="py-param">offset</tt><tt class="py-op">,</tt> </tt>
-<a name="L28"></a><tt class="py-lineno">28</tt> <tt class="py-line"> <tt class="py-param">x</tt><tt class="py-op">,</tt> </tt>
-<a name="L29"></a><tt class="py-lineno">29</tt> <tt class="py-line"> <tt class="py-param">y</tt><tt class="py-op">,</tt> </tt>
-<a name="L30"></a><tt class="py-lineno">30</tt> <tt class="py-line"> <tt class="py-param">nbytespp</tt><tt class="py-op">,</tt> </tt>
-<a name="L31"></a><tt class="py-lineno">31</tt> <tt class="py-line"> <tt class="py-param">datatype</tt><tt class="py-op">=</tt><tt class="py-string">'int'</tt><tt class="py-op">,</tt> </tt>
-<a name="L32"></a><tt class="py-lineno">32</tt> <tt class="py-line"> <tt class="py-param">signed</tt><tt class="py-op">=</tt><tt class="py-string">'n'</tt><tt class="py-op">,</tt> </tt>
-<a name="L33"></a><tt class="py-lineno">33</tt> <tt class="py-line"> <tt class="py-param">swap</tt><tt class="py-op">=</tt><tt class="py-string">'n'</tt><tt class="py-op">,</tt> </tt>
-<a name="L34"></a><tt class="py-lineno">34</tt> <tt class="py-line"> <tt class="py-param">typeout</tt><tt class="py-op">=</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="readbytestream-collapsed" style="display:none;" pad="++" indent="++++"></div><div id="readbytestream-expanded"><a name="L35"></a><tt class="py-lineno">35</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L36"></a><tt class="py-lineno">36</tt> <tt class="py-line"><tt class="py-docstring"> Reads in a bytestream from a file (which may be a string indicating</tt> </tt>
-<a name="L37"></a><tt class="py-lineno">37</tt> <tt class="py-line"><tt class="py-docstring"> a filename, or an already opened file (should be "rb"))</tt> </tt>
-<a name="L38"></a><tt class="py-lineno">38</tt> <tt class="py-line"><tt class="py-docstring"> offset is the position (in bytes) where the pixel data start</tt> </tt>
-<a name="L39"></a><tt class="py-lineno">39</tt> <tt class="py-line"><tt class="py-docstring"> nbytespp = number of bytes per pixel</tt> </tt>
-<a name="L40"></a><tt class="py-lineno">40</tt> <tt class="py-line"><tt class="py-docstring"> type can be int or float (4 bytes pp) or double (8 bytes pp)</tt> </tt>
-<a name="L41"></a><tt class="py-lineno">41</tt> <tt class="py-line"><tt class="py-docstring"> signed: normally signed data 'y', but 'n' to try to get back the </tt> </tt>
-<a name="L42"></a><tt class="py-lineno">42</tt> <tt class="py-line"><tt class="py-docstring"> right numbers when unsigned data are converted to signed </tt> </tt>
-<a name="L43"></a><tt class="py-lineno">43</tt> <tt class="py-line"><tt class="py-docstring"> (python once had no unsigned numeric types.)</tt> </tt>
-<a name="L44"></a><tt class="py-lineno">44</tt> <tt class="py-line"><tt class="py-docstring"> swap, normally do not bother, but 'y' to swap bytes</tt> </tt>
-<a name="L45"></a><tt class="py-lineno">45</tt> <tt class="py-line"><tt class="py-docstring"> typeout is the numpy type to output, normally uint16, </tt> </tt>
-<a name="L46"></a><tt class="py-lineno">46</tt> <tt class="py-line"><tt class="py-docstring"> but more if overflows occurred</tt> </tt>
-<a name="L47"></a><tt class="py-lineno">47</tt> <tt class="py-line"><tt class="py-docstring"> x and y are the pixel dimensions</tt> </tt>
-<a name="L48"></a><tt class="py-lineno">48</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L49"></a><tt class="py-lineno">49</tt> <tt class="py-line"><tt class="py-docstring"> TODO : Read in regions of interest</tt> </tt>
-<a name="L50"></a><tt class="py-lineno">50</tt> <tt class="py-line"><tt class="py-docstring"> </tt> </tt>
-<a name="L51"></a><tt class="py-lineno">51</tt> <tt class="py-line"><tt class="py-docstring"> PLEASE LEAVE THE STRANGE INTERFACE ALONE - </tt> </tt>
-<a name="L52"></a><tt class="py-lineno">52</tt> <tt class="py-line"><tt class="py-docstring"> IT IS USEFUL FOR THE BRUKER FORMAT</tt> </tt>
-<a name="L53"></a><tt class="py-lineno">53</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L54"></a><tt class="py-lineno">54</tt> <tt class="py-line"> <tt class="py-name">tin</tt> <tt class="py-op">=</tt> <tt class="py-string">"dunno"</tt> </tt>
-<a name="L55"></a><tt class="py-lineno">55</tt> <tt class="py-line"> <tt class="py-name">length</tt> <tt class="py-op">=</tt> <tt class="py-name">nbytespp</tt> <tt class="py-op">*</tt> <tt class="py-name">x</tt> <tt class="py-op">*</tt> <tt class="py-name">y</tt> <tt class="py-comment"># bytes per pixel times number of pixels</tt> </tt>
-<a name="L56"></a><tt class="py-lineno">56</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">datatype</tt> <tt class="py-keyword">in</tt> <tt class="py-op">[</tt><tt class="py-string">'float'</tt><tt class="py-op">,</tt> <tt class="py-string">'double'</tt><tt class="py-op">]</tt><tt class="py-op">:</tt> </tt>
-<a name="L57"></a><tt class="py-lineno">57</tt> <tt class="py-line"> <tt class="py-name">signed</tt> <tt class="py-op">=</tt> <tt class="py-string">'y'</tt> </tt>
-<a name="L58"></a><tt class="py-lineno">58</tt> <tt class="py-line"> </tt>
-<a name="L59"></a><tt class="py-lineno">59</tt> <tt class="py-line"> <tt id="link-2" class="py-name" targets="Variable fabio.fabioutils.key=fabio.fabioutils-module.html#key"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-2', 'key', 'link-2');">key</a></tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">datatype</tt><tt class="py-op">,</tt> <tt class="py-name">signed</tt><tt class="py-op">,</tt> <tt class="py-name">nbytespp [...]
-<a name="L60"></a><tt class="py-lineno">60</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L61"></a><tt class="py-lineno">61</tt> <tt class="py-line"> <tt class="py-name">tin</tt> <tt class="py-op">=</tt> <tt id="link-3" class="py-name"><a title="fabio.readbytestream.DATATYPES" class="py-name" href="#" onclick="return doclink('link-3', 'DATATYPES', 'link-1');">DATATYPES</a></tt><tt class="py-op">[</tt><tt id="link-4" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-4', 'key', 'link-2');">key</a></tt><tt cla [...]
-<a name="L62"></a><tt class="py-lineno">62</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L63"></a><tt class="py-lineno">63</tt> <tt class="py-line"> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"datatype,signed,nbytespp "</tt> <tt class="py-op">+</tt> <tt id="link-5" class="py-name" targets="Method fabio.fabioutils.filename_object.str()=fabio.fabioutils.filename_object-class.html#str,Class str=str-class.html"><a title="fabio.fabioutils.filename_object.str
-str" class="py-name" href="#" onclick="return doclink('link-5', 'str', 'link-5');">str</a></tt><tt class="py-op">(</tt><tt id="link-6" class="py-name"><a title="fabio.fabioutils.key" class="py-name" href="#" onclick="return doclink('link-6', 'key', 'link-2');">key</a></tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L64"></a><tt class="py-lineno">64</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">Exception</tt><tt class="py-op">(</tt><tt class="py-string">"Unknown combination of types to readbytestream"</tt><tt class="py-op">)</tt> </tt>
-<a name="L65"></a><tt class="py-lineno">65</tt> <tt class="py-line"> </tt>
-<a name="L66"></a><tt class="py-lineno">66</tt> <tt class="py-line"> <tt class="py-comment"># Did we get a string (filename) or a readable stream object?</tt> </tt>
-<a name="L67"></a><tt class="py-lineno">67</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">fil</tt><tt class="py-op">,</tt> <tt class="py-string">"read"</tt><tt class="py-op">)</tt> <tt class="py-keyword">and</tt> <tt class="py-name">hasattr</tt><tt class="py-op">(</tt><tt class="py-name">fil</tt><tt class="py-op">,</tt> <tt class="py-string">"seek"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L68"></a><tt class="py-lineno">68</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">fil</tt> </tt>
-<a name="L69"></a><tt class="py-lineno">69</tt> <tt class="py-line"> <tt class="py-name">opened</tt> <tt class="py-op">=</tt> <tt class="py-name">False</tt> </tt>
-<a name="L70"></a><tt class="py-lineno">70</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L71"></a><tt class="py-lineno">71</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">fil</tt><tt class="py-op">,</tt> <tt class="py-string">'rb'</tt><tt class="py-op">)</tt> </tt>
-<a name="L72"></a><tt class="py-lineno">72</tt> <tt class="py-line"> <tt class="py-name">opened</tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L73"></a><tt class="py-lineno">73</tt> <tt class="py-line"> </tt>
-<a name="L74"></a><tt class="py-lineno">74</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-name">offset</tt><tt class="py-op">)</tt> </tt>
-<a name="L75"></a><tt class="py-lineno">75</tt> <tt class="py-line"> </tt>
-<a name="L76"></a><tt class="py-lineno">76</tt> <tt class="py-line"> <tt class="py-name">arr</tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">array</tt><tt class="py-op">(</tt><tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">reshape</tt><tt class="py-op">(</tt> </tt>
-<a name="L77"></a><tt class="py-lineno">77</tt> <tt class="py-line"> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt> </tt>
-<a name="L78"></a><tt class="py-lineno">78</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt id="link-7" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDimage.read()=fabio.OXDimage.OXDimage-class.h [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-7', 'read', 'link-7');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">length</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">tin</tt><tt class="py-op">)</tt> <tt class="py-op">,</tt> <tt class="py-op">(</tt><tt class="py-name">x</tt><tt class="py-op">,</tt> <tt class="py-name">y</tt><tt class="py-op">)</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py- [...]
-<a name="L79"></a><tt class="py-lineno">79</tt> <tt class="py-line"> </tt>
-<a name="L80"></a><tt class="py-lineno">80</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">swap</tt> <tt class="py-op">==</tt> <tt class="py-string">'y'</tt><tt class="py-op">:</tt> </tt>
-<a name="L81"></a><tt class="py-lineno">81</tt> <tt class="py-line"> <tt class="py-name">arr</tt> <tt class="py-op">=</tt> <tt class="py-name">arr</tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L82"></a><tt class="py-lineno">82</tt> <tt class="py-line"> </tt>
-<a name="L83"></a><tt class="py-lineno">83</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">opened</tt><tt class="py-op">:</tt> </tt>
-<a name="L84"></a><tt class="py-lineno">84</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">close</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L85"></a><tt class="py-lineno">85</tt> <tt class="py-line"> </tt>
-<a name="L86"></a><tt class="py-lineno">86</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">arr</tt> </tt>
-</div><a name="L87"></a><tt class="py-lineno">87</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
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-// -->
-</script>
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diff --git a/doc/html/fabio.tifimage-module.html b/doc/html/fabio.tifimage-module.html
deleted file mode 100644
index eb0394e..0000000
--- a/doc/html/fabio.tifimage-module.html
+++ /dev/null
@@ -1,405 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.tifimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module tifimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.tifimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module tifimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.tifimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-FabIO class for dealing with TIFF images.
-In facts wraps TiffIO from Armando (available in PyMca) or falls back to PIL
-
-Authors: Jérôme Kieffer (jerome.kieffer at esrf.fr)
- Henning O. Sorensen & Erik Knudsen
- Center for Fundamental Research: Metal Structures in Four Dimensions
- Risoe National Laboratory
- Frederiksborgvej 399
- DK-4000 Roskilde
- email:henning.sorensen at risoe.dk
-License: GPLv3+
-
-</pre>
-
-<hr />
-<div class="fields"> <p><strong>Date:</strong>
- 11/07/2011
- </p>
- <dl><dt>Authors:</dt>
- <dd>
- J\xc3\xa9r\xc3\xb4me Kieffer,
- Henning O. Sorensen,
- Erik Knudsen
- </dd>
- </dl>
- <p><strong>Copyright:</strong>
- ESRF, Grenoble & Risoe National Laboratory
- </p>
- <p><strong>License:</strong>
- GPLv3+
- </p>
-</div><!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.tifimage.tifimage-class.html" class="summary-name">tifimage</a><br />
- Images in TIF format Wraps TiffIO
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.tifimage.Tiff_header-class.html" class="summary-name">Tiff_header</a>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.tifimage.Image_File_Directory-class.html" class="summary-name">Image_File_Directory</a>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.tifimage.Image_File_Directory_entry-class.html" class="summary-name">Image_File_Directory_entry</a>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("tifimage")">logging.getLogger("tifimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.tifimage-module.html#PIL_TO_NUMPY" class="summary-name">PIL_TO_NUMPY</a> = <code title="{'1': <type 'bool'>,
- 'F': <type 'numpy.float32'>,
- 'I': <type 'numpy.int32'>,
- 'I;16': <type 'numpy.uint16'>,
- 'L': <type 'numpy.uint8'>}"><code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">1</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'bool'><code class="variable-op">, </code><code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float32'<code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="LITTLE_ENDIAN"></a><span class="summary-name">LITTLE_ENDIAN</span> = <code title="1234">1234</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="BIG_ENDIAN"></a><span class="summary-name">BIG_ENDIAN</span> = <code title="3412">3412</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.tifimage-module.html#TYPES" class="summary-name">TYPES</a> = <code title="{0: 'invalid',
- 1: 'byte',
- 2: 'ascii',
- 3: 'short',
- 4: 'long',
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- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.tifimage-module.html#TYPESIZES" class="summary-name">TYPESIZES</a> = <code title="{0: 0,
- 1: 1,
- 2: 1,
- 3: 2,
- 4: 4,
- 5: 8,
- 6: 1,
- 7: 1,
-..."><code class="variable-group">{</code>0<code class="variable-op">: </code>0<code class="variable-op">, </code>1<code class="variable-op">: </code>1<code class="variable-op">, </code>2<code class="variable-op">: </code>1<code class="variable-op">, </code>3<code class="variable-op">: </code>2<code class="variable-op">, </code>4<code class="variable-op">: </code>4<code class="variable-op">, </code>5<code class="variable-op">: </code>8<code class="variable-op">, </code>6<code class="vari [...]
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.tifimage-module.html#baseline_tiff_tags" class="summary-name">baseline_tiff_tags</a> = <code title="{256: 'ImageWidth',
- 257: 'ImageLength',
- 258: 'BitsPerSample',
- 259: 'Compression',
- 262: 'PhotometricInterpretation',
- 264: 'CellWidth',
- 265: 'CellLength',
- 270: 'ImageDescription',
-..."><code class="variable-group">{</code>256<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ImageWidth</code><code class="variable-quote">'</code><code class="variable-op">, </code>257<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ImageLength</code><code class="variable-quote">'</code><code class="variable-op">, </code>2<code class="variable-ellipsis">...</code></code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES DETAILS ==================== -->
-<a name="section-VariablesDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-VariablesDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="PIL_TO_NUMPY"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">PIL_TO_NUMPY</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code><code class="variable-quote">'</code><code class="variable-string">1</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'bool'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">F</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.float32'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">I</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.int32'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">I;16</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.uint16'><code class="variable-op">,</code>
- <code class="variable-quote">'</code><code class="variable-string">L</code><code class="variable-quote">'</code><code class="variable-op">: </code><type 'numpy.uint8'><code class="variable-group">}</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="TYPES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">TYPES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>0<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">invalid</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 1<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">byte</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 2<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ascii</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 3<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">short</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 4<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">long</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 5<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">rational</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 6<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">sbyte</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 7<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">undefined</code><code class="variable-quote">'</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="TYPESIZES"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">TYPESIZES</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>0<code class="variable-op">: </code>0<code class="variable-op">,</code>
- 1<code class="variable-op">: </code>1<code class="variable-op">,</code>
- 2<code class="variable-op">: </code>1<code class="variable-op">,</code>
- 3<code class="variable-op">: </code>2<code class="variable-op">,</code>
- 4<code class="variable-op">: </code>4<code class="variable-op">,</code>
- 5<code class="variable-op">: </code>8<code class="variable-op">,</code>
- 6<code class="variable-op">: </code>1<code class="variable-op">,</code>
- 7<code class="variable-op">: </code>1<code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<a name="baseline_tiff_tags"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <h3 class="epydoc">baseline_tiff_tags</h3>
-
- <dl class="fields">
- </dl>
- <dl class="fields">
- <dt>Value:</dt>
- <dd><table><tr><td><pre class="variable">
-<code class="variable-group">{</code>256<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ImageWidth</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 257<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ImageLength</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 258<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">BitsPerSample</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 259<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">Compression</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 262<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">PhotometricInterpretation</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 264<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">CellWidth</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 265<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">CellLength</code><code class="variable-quote">'</code><code class="variable-op">,</code>
- 270<code class="variable-op">: </code><code class="variable-quote">'</code><code class="variable-string">ImageDescription</code><code class="variable-quote">'</code><code class="variable-op">,</code>
-<code class="variable-ellipsis">...</code>
-</pre></td></tr></table>
-</dd>
- </dl>
-</td></tr></table>
-</div>
-<br />
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diff --git a/doc/html/fabio.tifimage-pysrc.html b/doc/html/fabio.tifimage-pysrc.html
deleted file mode 100644
index 611c4e3..0000000
--- a/doc/html/fabio.tifimage-pysrc.html
+++ /dev/null
@@ -1,706 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.tifimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
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- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module tifimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.tifimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.tifimage-module.html">Module fabio.tifimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment">#-*- coding: utf8 -*-</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">FabIO class for dealing with TIFF images. </tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring">In facts wraps TiffIO from Armando (available in PyMca) or falls back to PIL</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">Authors: Jérôme Kieffer (jerome.kieffer at esrf.fr)</tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring"> Henning O. Sorensen & Erik Knudsen</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-docstring"> Center for Fundamental Research: Metal Structures in Four Dimensions</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-docstring"> Risoe National Laboratory</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-docstring"> Frederiksborgvej 399</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-docstring"> DK-4000 Roskilde</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"><tt class="py-docstring"> email:henning.sorensen at risoe.dk </tt> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-docstring">License: GPLv3+ </tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-name">__authors__</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-string">"Jérôme Kieffer"</tt><tt class="py-op">,</tt> <tt class="py-string">"Henning O. Sorensen"</tt><tt class="py-op">,</tt> <tt class="py-string">"Erik Knudsen"</tt><tt class="py-op">]</tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-name">__date__</tt> <tt class="py-op">=</tt> <tt class="py-string">"11/07/2011"</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-name">__license__</tt> <tt class="py-op">=</tt> <tt class="py-string">"GPLv3+"</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"><tt class="py-name">__copyright__</tt> <tt class="py-op">=</tt> <tt class="py-string">"ESRF, Grenoble & Risoe National Laboratory"</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">time</tt><tt class="py-op">,</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">struct</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"tifimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L24"></a><tt class="py-lineno"> 24</tt> <tt class="py-line"> <tt class="py-keyword">import</tt> <tt class="py-name">Image</tt> </tt>
-<a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"><tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"> <tt id="link-1" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-1', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"PIL is not installed ... trying to do without"</tt><tt class="py-op">)</tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"> <tt class="py-name">Image</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L28"></a><tt class="py-lineno"> 28</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-2" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-2');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-3" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-3', 'fabioimage', 'link-2');">fabioimage</a></tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-4" class="py-name" targets="Module fabio.TiffIO=fabio.TiffIO-module.html,Class fabio.TiffIO.TiffIO=fabio.TiffIO.TiffIO-class.html"><a title="fabio.TiffIO
-fabio.TiffIO.TiffIO" class="py-name" href="#" onclick="return doclink('link-4', 'TiffIO', 'link-4');">TiffIO</a></tt> <tt class="py-keyword">import</tt> <tt id="link-5" class="py-name"><a title="fabio.TiffIO
-fabio.TiffIO.TiffIO" class="py-name" href="#" onclick="return doclink('link-5', 'TiffIO', 'link-4');">TiffIO</a></tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"><tt id="link-6" class="py-name" targets="Variable fabio.tifimage.PIL_TO_NUMPY=fabio.tifimage-module.html#PIL_TO_NUMPY"><a title="fabio.tifimage.PIL_TO_NUMPY" class="py-name" href="#" onclick="return doclink('link-6', 'PIL_TO_NUMPY', 'link-6');">PIL_TO_NUMPY</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> <tt class="py-string">"I;16"</tt><tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op" [...]
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"> <tt class="py-string">"F"</tt><tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">,</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"> <tt class="py-string">"1"</tt><tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">bool</tt><tt class="py-op">,</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt class="py-string">"I"</tt><tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt><tt class="py-op">,</tt> </tt>
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-string">"L"</tt><tt class="py-op">:</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint8</tt><tt class="py-op">,</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"><tt id="link-7" class="py-name" targets="Variable fabio.tifimage.LITTLE_ENDIAN=fabio.tifimage-module.html#LITTLE_ENDIAN"><a title="fabio.tifimage.LITTLE_ENDIAN" class="py-name" href="#" onclick="return doclink('link-7', 'LITTLE_ENDIAN', 'link-7');">LITTLE_ENDIAN</a></tt> <tt class="py-op">=</tt> <tt class="py-number">1234</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"><tt id="link-8" class="py-name" targets="Variable fabio.tifimage.BIG_ENDIAN=fabio.tifimage-module.html#BIG_ENDIAN"><a title="fabio.tifimage.BIG_ENDIAN" class="py-name" href="#" onclick="return doclink('link-8', 'BIG_ENDIAN', 'link-8');">BIG_ENDIAN</a></tt> <tt class="py-op">=</tt> <tt class="py-number">3412</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"><tt id="link-9" class="py-name" targets="Variable fabio.tifimage.TYPES=fabio.tifimage-module.html#TYPES"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-9', 'TYPES', 'link-9');">TYPES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-number">0</tt><tt class="py-op">:</tt><tt class="py-string">'invalid'</tt><tt class="py-op">,</tt> <tt class="py-number">1</tt> [...]
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"><tt id="link-10" class="py-name" targets="Variable fabio.tifimage.TYPESIZES=fabio.tifimage-module.html#TYPESIZES"><a title="fabio.tifimage.TYPESIZES" class="py-name" href="#" onclick="return doclink('link-10', 'TYPESIZES', 'link-10');">TYPESIZES</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-number">0</tt><tt class="py-op">:</tt><tt class="py-number">0</tt><tt class="py-op">,</tt> <tt class="py [...]
-<a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="L46"></a><tt class="py-lineno"> 46</tt> <tt class="py-line"><tt id="link-11" class="py-name" targets="Variable fabio.tifimage.baseline_tiff_tags=fabio.tifimage-module.html#baseline_tiff_tags"><a title="fabio.tifimage.baseline_tiff_tags" class="py-name" href="#" onclick="return doclink('link-11', 'baseline_tiff_tags', 'link-11');">baseline_tiff_tags</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt> </tt>
-<a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-number">256</tt><tt class="py-op">:</tt><tt class="py-string">'ImageWidth'</tt><tt class="py-op">,</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"> <tt class="py-number">257</tt><tt class="py-op">:</tt><tt class="py-string">'ImageLength'</tt><tt class="py-op">,</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-number">306</tt><tt class="py-op">:</tt><tt class="py-string">'DateTime'</tt><tt class="py-op">,</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-number">315</tt><tt class="py-op">:</tt><tt class="py-string">'Artist'</tt><tt class="py-op">,</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-number">258</tt><tt class="py-op">:</tt><tt class="py-string">'BitsPerSample'</tt><tt class="py-op">,</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-number">265</tt><tt class="py-op">:</tt><tt class="py-string">'CellLength'</tt><tt class="py-op">,</tt> </tt>
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-number">264</tt><tt class="py-op">:</tt><tt class="py-string">'CellWidth'</tt><tt class="py-op">,</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> <tt class="py-number">259</tt><tt class="py-op">:</tt><tt class="py-string">'Compression'</tt><tt class="py-op">,</tt> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-number">262</tt><tt class="py-op">:</tt><tt class="py-string">'PhotometricInterpretation'</tt><tt class="py-op">,</tt> </tt>
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-number">296</tt><tt class="py-op">:</tt><tt class="py-string">'ResolutionUnit'</tt><tt class="py-op">,</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-number">282</tt><tt class="py-op">:</tt><tt class="py-string">'XResolution'</tt><tt class="py-op">,</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-number">283</tt><tt class="py-op">:</tt><tt class="py-string">'YResolution'</tt><tt class="py-op">,</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> </tt>
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-number">278</tt><tt class="py-op">:</tt><tt class="py-string">'RowsPerStrip'</tt><tt class="py-op">,</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-number">273</tt><tt class="py-op">:</tt><tt class="py-string">'StripOffset'</tt><tt class="py-op">,</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-number">279</tt><tt class="py-op">:</tt><tt class="py-string">'StripByteCounts'</tt><tt class="py-op">,</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt class="py-number">270</tt><tt class="py-op">:</tt><tt class="py-string">'ImageDescription'</tt><tt class="py-op">,</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> <tt class="py-number">271</tt><tt class="py-op">:</tt><tt class="py-string">'Make'</tt><tt class="py-op">,</tt> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-number">272</tt><tt class="py-op">:</tt><tt class="py-string">'Model'</tt><tt class="py-op">,</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-number">320</tt><tt class="py-op">:</tt><tt class="py-string">'ColorMap'</tt><tt class="py-op">,</tt> </tt>
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-number">305</tt><tt class="py-op">:</tt><tt class="py-string">'Software'</tt><tt class="py-op">,</tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-number">339</tt><tt class="py-op">:</tt><tt class="py-string">'SampleFormat'</tt><tt class="py-op">,</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> <tt class="py-number">33432</tt><tt class="py-op">:</tt><tt class="py-string">'Copyright'</tt> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-op">}</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> </tt>
-<a name="tifimage"></a><div id="tifimage-def"><a name="L74"></a><tt class="py-lineno"> 74</tt> <a class="py-toggle" href="#" id="tifimage-toggle" onclick="return toggle('tifimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.tifimage.tifimage-class.html">tifimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="tifimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="tifimage-expanded"><a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"><tt class="py-docstring"> Images in TIF format</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"><tt class="py-docstring"> Wraps TiffIO</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt id="link-12" class="py-name" targets="Variable fabio.GEimage.GEimage._need_a_seek_to_read=fabio.GEimage.GEimage-class.html#_need_a_seek_to_read,Variable fabio.fabioimage.fabioimage._need_a_seek_to_read=fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read,Variable fabio.tifimage.tifimage._need_a_seek_to_read=fabio.tifimage.tifimage-class.html#_need_a_seek_to_read"><a title="fabio.GEimage.GEimage._need_a_s [...]
-fabio.fabioimage.fabioimage._need_a_seek_to_read
-fabio.tifimage.tifimage._need_a_seek_to_read" class="py-name" href="#" onclick="return doclink('link-12', '_need_a_seek_to_read', 'link-12');">_need_a_seek_to_read</a></tt> <tt class="py-op">=</tt> <tt class="py-name">True</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> </tt>
-<a name="tifimage.__init__"></a><div id="tifimage.__init__-def"><a name="L81"></a><tt class="py-lineno"> 81</tt> <a class="py-toggle" href="#" id="tifimage.__init__-toggle" onclick="return toggle('tifimage.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.tifimage.tifimage-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-param">ar [...]
-</div><div id="tifimage.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="tifimage.__init__-expanded"><a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-docstring">""" Tifimage constructor adds an nbits member attribute """</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nbits</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> <tt id="link-13" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-13', 'fabioimage', 'link-2');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage.__i [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-14', '__init__', 'link-14');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt class="py-op">*</tt><tt class="py-name">args</tt><tt class="py-op">,</tt> <tt class="py-op">**</tt><tt class="py-name">kwds</tt><tt class="py-op">)</tt> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lib</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> </tt>
-<a name="tifimage._readheader"></a><div id="tifimage._readheader-def"><a name="L87"></a><tt class="py-lineno"> 87</tt> <a class="py-toggle" href="#" id="tifimage._readheader-toggle" onclick="return toggle('tifimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.tifimage.tifimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">infile</ [...]
-</div><div id="tifimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="tifimage._readheader-expanded"><a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"><tt class="py-docstring"> Try to read Tiff images header...</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"><tt class="py-comment"># try:</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"><tt class="py-comment"># self.header = { "filename" : infile.name }</tt> </tt>
-<a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"><tt class="py-comment"># except AttributeError:</tt> </tt>
-<a name="L94"></a><tt class="py-lineno"> 94</tt> <tt class="py-line"><tt class="py-comment"># self.header = {}</tt> </tt>
-<a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"><tt class="py-comment">#</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt class="py-comment"># t = Tiff_header(infile.read())</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"><tt class="py-comment"># self.header = t.header</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"><tt class="py-comment"># try:</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"><tt class="py-comment"># self.dim1 = int(self.header['ImageWidth'])</tt> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"><tt class="py-comment"># self.dim2 = int(self.header['ImageLength'])</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"><tt class="py-comment"># except (KeyError):</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"><tt class="py-comment"># logger.warning("image dimensions could not be determined from header tags, trying to go on anyway")</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"><tt class="py-comment"># read the first 32 bytes to determine size</tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt id="link-15" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-15', 'header', 'link-15');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-16', 'read', 'link-16');">read</a></tt><tt class="py-op">(</tt><tt class="py-number">64</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">uint16</tt><tt class="py-op">)</tt> </tt>
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-17', 'dim1', 'link-17');">dim1</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt id="link-18" class="py- [...]
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name" targets="Variable fabio.edfimage.edfimage.dim2=fabio.edfimage.edfimage-class.html#dim2"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-19', 'dim2', 'link-19');">dim2</a></tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt id="link-20" class="py- [...]
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"><tt class="py-comment"># nbits is not a fabioimage attribute...</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">nbits</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt id="link-21" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-21', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-number">21</tt><tt class="py-op">]</tt><t [...]
-</div><a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> </tt>
-<a name="tifimage.read"></a><div id="tifimage.read-def"><a name="L110"></a><tt class="py-lineno">110</tt> <a class="py-toggle" href="#" id="tifimage.read-toggle" onclick="return toggle('tifimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.tifimage.tifimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py- [...]
-</div><div id="tifimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="tifimage.read-expanded"><a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"><tt class="py-docstring"> Wrapper for TiffIO.</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-22" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-22', '_open', 'link-22');">_open</a></tt><tt class="py-op">(</tt><tt cla [...]
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-23" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._re [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-23', '_readheader', 'link-23');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lib</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">tiffIO</tt> <tt class="py-op">=</tt> <tt id="link-24" class="py-name"><a title="fabio.TiffIO
-fabio.TiffIO.TiffIO" class="py-name" href="#" onclick="return doclink('link-24', 'TiffIO', 'link-4');">TiffIO</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">tiffIO</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name" targets="Method fabio.TiffIO.TiffIO.getNumberOfImages()=fabio.TiffIO.TiffIO-class.html#getNumberOfImages"><a title="fabio.TiffIO.TiffIO.getNumberOfImages" class="py-name" href="#" onclick="return doclink('link-25', 'getNumberOfImages', 'link-25');">getNumberOfImages</a></tt><tt class="py-o [...]
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-comment">#No support for now of multi-frame tiff images</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-26" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-26', 'data', 'link-26');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">tiffIO</tt><tt class="py-op">.</tt><tt id="link-27" class="py-name" targets="Method fabio.TiffIO.TiffIO.getImage()=fabio.TiffIO.TiffIO-class.html#getImage"><a title="fabio.TiffIO.TiffIO.getImage" class="py-name" href="#" onclick="return doclink('link-27', 'getImage', 'link-27');">getImage</a></tt><tt class="py-op">(</tt> [...]
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-28', 'header', 'link-15');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-name">tiffIO</tt><tt class="py-op">.</tt><tt id="link-29" class="py-name" targets="Method fabio.TiffIO.TiffIO.getInfo()=fabio.TiffIO.TiffIO [...]
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt id="link-30" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-30', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to read %s with TiffIO due to %s, trying PIL"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-31', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">ndim</tt> <tt class="py-op">==</tt> <tt class="py-number">2</tt><tt class="py-op">:</tt> </tt>
-<a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-32', 'dim2', 'link-19');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-33" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick=" [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-34', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-35', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">ndim</tt> <tt class="py-op">==</tt> <tt class="py-number">3</tt><tt class="py-op">:</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-36', 'dim2', 'link-19');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-37" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick=" [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-38', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> <tt id="link-39" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-39', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Third dimension is the color"</tt><tt class="py-op">)</tt> </tt>
-<a name="L132"></a><tt class="py-lineno">132</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L133"></a><tt class="py-lineno">133</tt> <tt class="py-line"> <tt id="link-40" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-40', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"dataset has %s dimensions (%s), check for errors !!!!"</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-41" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-41', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">ndim</tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-42" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-42', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt><tt class="py-op">)</tt> </tt>
-<a name="L134"></a><tt class="py-lineno">134</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lib</tt> <tt class="py-op">=</tt> <tt class="py-string">"TiffIO"</tt> </tt>
-<a name="L135"></a><tt class="py-lineno">135</tt> <tt class="py-line"> </tt>
-<a name="L136"></a><tt class="py-lineno">136</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lib</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L137"></a><tt class="py-lineno">137</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">Image</tt><tt class="py-op">:</tt> </tt>
-<a name="L138"></a><tt class="py-lineno">138</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L139"></a><tt class="py-lineno">139</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L140"></a><tt class="py-lineno">140</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">Image</tt><tt class="py-op">.</tt><tt class="py-name">open</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L141"></a><tt class="py-lineno">141</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">:</tt> </tt>
-<a name="L142"></a><tt class="py-lineno">142</tt> <tt class="py-line"> <tt id="link-43" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-43', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Error in opening %s with PIL"</tt> <tt class="py-op">%</tt> <tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-<a name="L143"></a><tt class="py-lineno">143</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lib</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L144"></a><tt class="py-lineno">144</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L145"></a><tt class="py-lineno">145</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L146"></a><tt class="py-lineno">146</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lib</tt> <tt class="py-op">=</tt> <tt class="py-string">"PIL"</tt> </tt>
-<a name="L147"></a><tt class="py-lineno">147</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-44" class="py-name"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-44', 'dim1', 'link-17');">dim1</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-45" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" oncli [...]
-<a name="L148"></a><tt class="py-lineno">148</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt><tt class="py-op">.</tt><tt class="py-name">mode</tt> <tt class="py-keyword">in</tt> <tt id="link-46" class="py-name"><a title="fabio.tifimage.PIL_TO_NUMPY" class="py-name" href="#" onclick="return doclink('link-46', 'PIL_TO_NUMPY', 'link-6');">PIL_TO_NUMPY</a></tt><tt class="py-op"> [...]
-<a name="L149"></a><tt class="py-lineno">149</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-47" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-47', 'data', 'link-26');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt><tt class="py-op">.</tt><tt id="link-48" class="py-name" targets="Method fabio.cbfimage.CIF.tostring()=fabio.cbfimage.CIF-class.html#tostring,M [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-48', 'tostring', 'link-48');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt id="link-49" class="py-name"><a title="fabio.tifimage.PIL_TO_NUMPY" class="py-name" href="#" onclick="return doclink('link-49', 'PIL_TO_NUMPY', 'link-6');">PIL_TO_NUMPY</a></tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-na [...]
-<a name="L150"></a><tt class="py-lineno">150</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> <tt class="py-comment">#probably RGB or RGBA images: rely on PIL to convert it to greyscale float.</tt> </tt>
-<a name="L151"></a><tt class="py-lineno">151</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-50" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-50', 'data', 'link-26');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt><tt class="py-op">.</tt><tt id="link-51" class="py-name" targets="Method fabio.fabioimage.fabioimage.convert()=fabio.fabioimage.fabioimage-clas [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-52', 'tostring', 'link-48');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">float32</tt><tt class="py-op">)</tt> </tt>
-<a name="L152"></a><tt class="py-lineno">152</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-53" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-53', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">shape</tt> <tt class="py-op">=</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-54" class="py-name"><a title="fabio.edfimage.edfimage.dim2" class="py-name" href="#" onclick="return doclink('link-54', 'dim2', 'link-19');">dim2</a></tt><tt class="py-op">,</tt> <tt class="py-name" [...]
-<a name="L153"></a><tt class="py-lineno">153</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L154"></a><tt class="py-lineno">154</tt> <tt class="py-line"> <tt id="link-56" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-56', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">error</tt><tt class="py-op">(</tt><tt class="py-string">"Error in opening %s: no tiff reader managed to read the file."</tt><tt class="py-op">,</tt> <tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-<a name="L155"></a><tt class="py-lineno">155</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">lib</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L156"></a><tt class="py-lineno">156</tt> <tt class="py-line"> <tt class="py-name">infile</tt><tt class="py-op">.</tt><tt class="py-name">seek</tt><tt class="py-op">(</tt><tt class="py-number">0</tt><tt class="py-op">)</tt> </tt>
-<a name="L157"></a><tt class="py-lineno">157</tt> <tt class="py-line"> </tt>
-<a name="L158"></a><tt class="py-lineno">158</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-57" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-57', 'bpp', 'link-57');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-58" class="py-name" targets="Method fabio.file_series.file_series.len() [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-59', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt id="link-60" class="py-name"><a title="fabio.cbfimage.CIF.tostring
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-60', 'tostring', 'link-48');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L159"></a><tt class="py-lineno">159</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-61" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-61', 'bytecode', 'link-61');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-62', 'data', 'link-26');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt><tt class="py-op">.</tt><tt class="py-name">name</tt> </tt>
-<a name="L160"></a><tt class="py-lineno">160</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-63" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-63', 'resetvals', 'link-63');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L161"></a><tt class="py-lineno">161</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L162"></a><tt class="py-lineno">162</tt> <tt class="py-line"> </tt>
-<a name="tifimage.write"></a><div id="tifimage.write-def"><a name="L163"></a><tt class="py-lineno">163</tt> <a class="py-toggle" href="#" id="tifimage.write-toggle" onclick="return toggle('tifimage.write');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.tifimage.tifimage-class.html#write">write</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">)</tt><tt class [...]
-</div><div id="tifimage.write-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="tifimage.write-expanded"><a name="L164"></a><tt class="py-lineno">164</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L165"></a><tt class="py-lineno">165</tt> <tt class="py-line"><tt class="py-docstring"> Overrides the fabioimage.write method and provides a simple TIFF image writer.</tt> </tt>
-<a name="L166"></a><tt class="py-lineno">166</tt> <tt class="py-line"><tt class="py-docstring"> @param fname: name of the file to save the image to</tt> </tt>
-<a name="L167"></a><tt class="py-lineno">167</tt> <tt class="py-line"><tt class="py-docstring"> @tag_type fname: string or unicode (file?)...</tt> </tt>
-<a name="L168"></a><tt class="py-lineno">168</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L169"></a><tt class="py-lineno">169</tt> <tt class="py-line"> <tt class="py-name">tiffIO</tt> <tt class="py-op">=</tt> <tt id="link-64" class="py-name"><a title="fabio.TiffIO
-fabio.TiffIO.TiffIO" class="py-name" href="#" onclick="return doclink('link-64', 'TiffIO', 'link-4');">TiffIO</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">,</tt> <tt class="py-name">mode</tt><tt class="py-op">=</tt><tt class="py-string">"w"</tt><tt class="py-op">)</tt> </tt>
-<a name="L170"></a><tt class="py-lineno">170</tt> <tt class="py-line"> <tt class="py-name">tiffIO</tt><tt class="py-op">.</tt><tt id="link-65" class="py-name" targets="Method fabio.TiffIO.TiffIO.writeImage()=fabio.TiffIO.TiffIO-class.html#writeImage"><a title="fabio.TiffIO.TiffIO.writeImage" class="py-name" href="#" onclick="return doclink('link-65', 'writeImage', 'link-65');">writeImage</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id=" [...]
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-66', 'data', 'link-26');">data</a></tt><tt class="py-op">,</tt> <tt class="py-name">info</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-67" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-67', 'header', 'link-15');">header</a></tt><tt class="py-op">,</tt> <tt class="py-name">software</tt><tt cl [...]
-</div></div><a name="L171"></a><tt class="py-lineno">171</tt> <tt class="py-line"> </tt>
-<a name="L172"></a><tt class="py-lineno">172</tt> <tt class="py-line"> </tt>
-<a name="L173"></a><tt class="py-lineno">173</tt> <tt class="py-line"> </tt>
-<a name="L174"></a><tt class="py-lineno">174</tt> <tt class="py-line"><tt class="py-comment">#define a couple of helper classes here: </tt> </tt>
-<a name="Tiff_header"></a><div id="Tiff_header-def"><a name="L175"></a><tt class="py-lineno">175</tt> <a class="py-toggle" href="#" id="Tiff_header-toggle" onclick="return toggle('Tiff_header');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.tifimage.Tiff_header-class.html">Tiff_header</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="Tiff_header-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Tiff_header-expanded"><a name="Tiff_header.__init__"></a><div id="Tiff_header.__init__-def"><a name="L176"></a><tt class="py-lineno">176</tt> <a class="py-toggle" href="#" id="Tiff_header.__init__-toggle" onclick="return toggle('Tiff_header.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.tifimage.Tiff_header-class.html#__init__">_ [...]
-</div><div id="Tiff_header.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Tiff_header.__init__-expanded"><a name="L177"></a><tt class="py-lineno">177</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">string</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">"II\x2a\x00"</tt><tt class="py-op">:</tt> </tt>
-<a name="L178"></a><tt class="py-lineno">178</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">byteorder</tt> <tt class="py-op">=</tt> <tt id="link-68" class="py-name"><a title="fabio.tifimage.LITTLE_ENDIAN" class="py-name" href="#" onclick="return doclink('link-68', 'LITTLE_ENDIAN', 'link-7');">LITTLE_ENDIAN</a></tt> </tt>
-<a name="L179"></a><tt class="py-lineno">179</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">string</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">4</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'MM\x00\x2a'</tt><tt class="py-op">:</tt> </tt>
-<a name="L180"></a><tt class="py-lineno">180</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">byteorder</tt> <tt class="py-op">=</tt> <tt id="link-69" class="py-name"><a title="fabio.tifimage.BIG_ENDIAN" class="py-name" href="#" onclick="return doclink('link-69', 'BIG_ENDIAN', 'link-8');">BIG_ENDIAN</a></tt> </tt>
-<a name="L181"></a><tt class="py-lineno">181</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L182"></a><tt class="py-lineno">182</tt> <tt class="py-line"> <tt id="link-70" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-70', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Warning: This does not appear to be a tiff file"</tt><tt class="py-op">)</tt> </tt>
-<a name="L183"></a><tt class="py-lineno">183</tt> <tt class="py-line"> <tt class="py-comment">#the next two bytes contains the offset of the oth IFD</tt> </tt>
-<a name="L184"></a><tt class="py-lineno">184</tt> <tt class="py-line"> <tt class="py-name">offset_first_ifd</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"h"</tt><tt class="py-op">,</tt> <tt class="py-name">string</tt><tt class="py-op">[</tt><tt class="py-number">4</tt><tt class="py-op">:</tt><tt class="py-op">]</tt><tt class="py-op">)</tt><tt class="py-op">[</ [...]
-<a name="L185"></a><tt class="py-lineno">185</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">ifd</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt id="link-71" class="py-name" targets="Class fabio.tifimage.Image_File_Directory=fabio.tifimage.Image_File_Directory-class.html"><a title="fabio.tifimage.Image_File_Directory" class="py-name" href="#" onclick="return doclink('link-71', 'Image_File_Directory', 'link-71');">Image_ [...]
-<a name="L186"></a><tt class="py-lineno">186</tt> <tt class="py-line"> <tt class="py-name">offset_next</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">ifd</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-72" class="py-name" targets="Method fabio.edfimage.edfimage.unpack()=fabio.edfimage.edfimage-class.html#unpack,Method fabio.tifimage.Image_File_Directory.unp [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-72', 'unpack', 'link-72');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">string</tt><tt class="py-op">,</tt> <tt class="py-name">offset_first_ifd</tt><tt class="py-op">)</tt> </tt>
-<a name="L187"></a><tt class="py-lineno">187</tt> <tt class="py-line"> <tt class="py-keyword">while</tt> <tt class="py-op">(</tt><tt class="py-name">offset_next</tt> <tt class="py-op">!=</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L188"></a><tt class="py-lineno">188</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">ifd</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt id="link-73" class="py-name"><a title="fabio.tifimage.Image_File_Directory" class="py-name" href="#" onclick="return doclink('link-73', 'Image_File_Directory', 'link-71');">Image_File_Directory</a></tt><tt class="py-op">(</tt><tt class="py-op">) [...]
-<a name="L189"></a><tt class="py-lineno">189</tt> <tt class="py-line"> <tt class="py-name">offset_next</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">ifd</tt><tt class="py-op">[</tt><tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt id="link-74" class="py-name"><a title="fabio.edfimage.edfimage.unpack
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-74', 'unpack', 'link-72');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">string</tt><tt class="py-op">,</tt> <tt class="py-name">offset_next</tt><tt class="py-op">)</tt> </tt>
-<a name="L190"></a><tt class="py-lineno">190</tt> <tt class="py-line"> </tt>
-<a name="L191"></a><tt class="py-lineno">191</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-75" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-75', 'header', 'link-15');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L192"></a><tt class="py-lineno">192</tt> <tt class="py-line"> <tt class="py-comment">#read the values of the header items into a dictionary</tt> </tt>
-<a name="L193"></a><tt class="py-lineno">193</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">entry</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">ifd</tt><tt class="py-op">[</tt><tt class="py-number">0</tt><tt class="py-op">]</tt><tt class="py-op">.</tt><tt class="py-name">entries</tt><tt class="py-op">:</tt> </tt>
-<a name="L194"></a><tt class="py-lineno">194</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">entry</tt><tt class="py-op">.</tt><tt class="py-name">tag</tt> <tt class="py-keyword">in</tt> <tt id="link-76" class="py-name"><a title="fabio.tifimage.baseline_tiff_tags" class="py-name" href="#" onclick="return doclink('link-76', 'baseline_tiff_tags', 'link-11');">baseline_tiff_tags</a></tt><tt class="py-op">.</tt><tt class="py-name">keys</tt><tt class=" [...]
-<a name="L195"></a><tt class="py-lineno">195</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-77" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-77', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt id="link-78" class="py-name"><a title="fabio.tifimage.baseline_tiff_tags" class="py-name" href="#" onclick="return doclink('link-78', 'baseline_tiff_ta [...]
-<a name="L196"></a><tt class="py-lineno">196</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L197"></a><tt class="py-lineno">197</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-79" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-79', 'header', 'link-15');">header</a></tt><tt class="py-op">[</tt><tt class="py-name">entry</tt><tt class="py-op">.</tt><tt class="py-name">tag</tt><tt class="py-op">]</tt> <tt class="py-op">=</tt> <tt class="py-name">ent [...]
-</div></div><a name="L198"></a><tt class="py-lineno">198</tt> <tt class="py-line"> </tt>
-<a name="Image_File_Directory"></a><div id="Image_File_Directory-def"><a name="L199"></a><tt class="py-lineno">199</tt> <a class="py-toggle" href="#" id="Image_File_Directory-toggle" onclick="return toggle('Image_File_Directory');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.tifimage.Image_File_Directory-class.html">Image_File_Directory</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt class="py-op">)</tt><tt class="py-o [...]
-</div><div id="Image_File_Directory-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Image_File_Directory-expanded"><a name="Image_File_Directory.__init__"></a><div id="Image_File_Directory.__init__-def"><a name="L200"></a><tt class="py-lineno">200</tt> <a class="py-toggle" href="#" id="Image_File_Directory.__init__-toggle" onclick="return toggle('Image_File_Directory.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" h [...]
-</div><div id="Image_File_Directory.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Image_File_Directory.__init__-expanded"><a name="L201"></a><tt class="py-lineno">201</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">entries</tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L202"></a><tt class="py-lineno">202</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">offset</tt> <tt class="py-op">=</tt> <tt class="py-name">offset</tt> </tt>
-<a name="L203"></a><tt class="py-lineno">203</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">count</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L204"></a><tt class="py-lineno">204</tt> <tt class="py-line"> </tt>
-<a name="Image_File_Directory.unpack"></a><div id="Image_File_Directory.unpack-def"><a name="L205"></a><tt class="py-lineno">205</tt> <a class="py-toggle" href="#" id="Image_File_Directory.unpack-toggle" onclick="return toggle('Image_File_Directory.unpack');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.tifimage.Image_File_Directory-class.html#unpack">unpack</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt [...]
-</div><div id="Image_File_Directory.unpack-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Image_File_Directory.unpack-expanded"><a name="L206"></a><tt class="py-lineno">206</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">offset</tt> <tt class="py-op">==</tt> <tt class="py-op">-</tt><tt class="py-number">1</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> <tt class="py-name">offset</tt> <tt class= [...]
-<a name="L207"></a><tt class="py-lineno">207</tt> <tt class="py-line"> </tt>
-<a name="L208"></a><tt class="py-lineno">208</tt> <tt class="py-line"> <tt class="py-name">strInput</tt> <tt class="py-op">=</tt> <tt class="py-name">instring</tt><tt class="py-op">[</tt><tt class="py-name">offset</tt><tt class="py-op">:</tt><tt class="py-op">]</tt> </tt>
-<a name="L209"></a><tt class="py-lineno">209</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">count</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"H"</tt><tt class="py-op">,</tt> <tt class="py-name">strInput</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">2</tt><tt class="py-op">]</tt>< [...]
-<a name="L210"></a><tt class="py-lineno">210</tt> <tt class="py-line"> <tt class="py-comment">#0th IFD contains count-1 entries (count includes the adress of the next IFD)</tt> </tt>
-<a name="L211"></a><tt class="py-lineno">211</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-80" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-80', 'i', 'link-80');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">range</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">co [...]
-<a name="L212"></a><tt class="py-lineno">212</tt> <tt class="py-line"> <tt class="py-name">e</tt> <tt class="py-op">=</tt> <tt id="link-81" class="py-name" targets="Class fabio.tifimage.Image_File_Directory_entry=fabio.tifimage.Image_File_Directory_entry-class.html"><a title="fabio.tifimage.Image_File_Directory_entry" class="py-name" href="#" onclick="return doclink('link-81', 'Image_File_Directory_entry', 'link-81');">Image_File_Directory_entry</a></tt><tt class="py-op">(</t [...]
-fabio.tifimage.Image_File_Directory.unpack
-fabio.tifimage.Image_File_Directory_entry.unpack" class="py-name" href="#" onclick="return doclink('link-82', 'unpack', 'link-72');">unpack</a></tt><tt class="py-op">(</tt><tt class="py-name">strInput</tt><tt class="py-op">[</tt><tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py-number">12</tt> <tt class="py-op">*</tt> <tt class="py-op">(</tt><tt id="link-83" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-83', 'i', 'l [...]
-<a name="L213"></a><tt class="py-lineno">213</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">e</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L214"></a><tt class="py-lineno">214</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">entries</tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">e</tt><tt class="py-op">)</tt> </tt>
-<a name="L215"></a><tt class="py-lineno">215</tt> <tt class="py-line"> <tt class="py-comment">#extract data associated with tags</tt> </tt>
-<a name="L216"></a><tt class="py-lineno">216</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt class="py-name">e</tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">entries</tt><tt class="py-op">:</tt> </tt>
-<a name="L217"></a><tt class="py-lineno">217</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">e</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">==</tt> <tt class="py-name">None</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L218"></a><tt class="py-lineno">218</tt> <tt class="py-line"> <tt class="py-name">e</tt><tt class="py-op">.</tt><tt id="link-84" class="py-name" targets="Method fabio.tifimage.Image_File_Directory_entry.extract_data()=fabio.tifimage.Image_File_Directory_entry-class.html#extract_data"><a title="fabio.tifimage.Image_File_Directory_entry.extract_data" class="py-name" href="#" onclick="return doclink('link-84', 'extract_data', 'link-84');">extract_data</a></tt><t [...]
-<a name="L219"></a><tt class="py-lineno">219</tt> <tt class="py-line"> <tt class="py-comment">#do we have some more ifds in this file </tt> </tt>
-<a name="L220"></a><tt class="py-lineno">220</tt> <tt class="py-line"> <tt class="py-name">offset_next</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"L"</tt><tt class="py-op">,</tt> <tt class="py-name">instring</tt><tt class="py-op">[</tt><tt class="py-name">offset</tt> <tt class="py-op">+</tt> <tt class="py-number">2</tt> <tt class="py-op">+</tt> <tt class="py [...]
-<a name="L221"></a><tt class="py-lineno">221</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">offset_next</tt> </tt>
-</div></div><a name="L222"></a><tt class="py-lineno">222</tt> <tt class="py-line"> </tt>
-<a name="Image_File_Directory_entry"></a><div id="Image_File_Directory_entry-def"><a name="L223"></a><tt class="py-lineno">223</tt> <a class="py-toggle" href="#" id="Image_File_Directory_entry-toggle" onclick="return toggle('Image_File_Directory_entry');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.tifimage.Image_File_Directory_entry-class.html">Image_File_Directory_entry</a><tt class="py-op">(</tt><tt class="py-base-class">object</tt><tt [...]
-</div><div id="Image_File_Directory_entry-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="Image_File_Directory_entry-expanded"><a name="Image_File_Directory_entry.__init__"></a><div id="Image_File_Directory_entry.__init__-def"><a name="L224"></a><tt class="py-lineno">224</tt> <a class="py-toggle" href="#" id="Image_File_Directory_entry.__init__-toggle" onclick="return toggle('Image_File_Directory_entry.__init__');">-</a><tt class="py-line"> <tt class="py-keywor [...]
-</div><div id="Image_File_Directory_entry.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Image_File_Directory_entry.__init__-expanded"><a name="L225"></a><tt class="py-lineno">225</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag</tt> <tt class="py-op">=</tt> <tt class="py-name">tag</tt> </tt>
-<a name="L226"></a><tt class="py-lineno">226</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_type</tt> <tt class="py-op">=</tt> <tt class="py-name">tag_type</tt> </tt>
-<a name="L227"></a><tt class="py-lineno">227</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">count</tt> <tt class="py-op">=</tt> <tt class="py-name">count</tt> </tt>
-<a name="L228"></a><tt class="py-lineno">228</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> <tt class="py-op">=</tt> <tt class="py-name">offset</tt> </tt>
-<a name="L229"></a><tt class="py-lineno">229</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-</div><a name="L230"></a><tt class="py-lineno">230</tt> <tt class="py-line"> </tt>
-<a name="Image_File_Directory_entry.unpack"></a><div id="Image_File_Directory_entry.unpack-def"><a name="L231"></a><tt class="py-lineno">231</tt> <a class="py-toggle" href="#" id="Image_File_Directory_entry.unpack-toggle" onclick="return toggle('Image_File_Directory_entry.unpack');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.tifimage.Image_File_Directory_entry-class.html#unpack">unpack</a><tt class="py-op">(</tt><tt class="py-param">se [...]
-</div><div id="Image_File_Directory_entry.unpack-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Image_File_Directory_entry.unpack-expanded"><a name="L232"></a><tt class="py-lineno">232</tt> <tt class="py-line"> <tt class="py-name">idfentry</tt> <tt class="py-op">=</tt> <tt class="py-name">strInput</tt><tt class="py-op">[</tt><tt class="py-op">:</tt><tt class="py-number">12</tt><tt class="py-op">]</tt> </tt>
-<a name="L233"></a><tt class="py-lineno">233</tt> <tt class="py-line"><tt class="py-comment">################################################################################</tt> </tt>
-<a name="L234"></a><tt class="py-lineno">234</tt> <tt class="py-line"><tt class="py-comment"># # TOFIX: How is it possible that HHL (2+2+4 bytes has a size of )</tt> </tt>
-<a name="L235"></a><tt class="py-lineno">235</tt> <tt class="py-line"><tt class="py-comment">################################################################################</tt> </tt>
-<a name="L236"></a><tt class="py-lineno">236</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">tag</tt><tt class="py-op">,</tt> <tt class="py-name">tag_type</tt><tt class="py-op">,</tt> <tt class="py-name">count</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"HHL"</tt><tt class="py-op">,</tt> <tt class="py-name">idfent [...]
-<a name="L237"></a><tt class="py-lineno">237</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag</tt> <tt class="py-op">=</tt> <tt class="py-name">tag</tt> </tt>
-<a name="L238"></a><tt class="py-lineno">238</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">count</tt> <tt class="py-op">=</tt> <tt class="py-name">count</tt> </tt>
-<a name="L239"></a><tt class="py-lineno">239</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_type</tt> <tt class="py-op">=</tt> <tt class="py-name">tag_type</tt> </tt>
-<a name="L240"></a><tt class="py-lineno">240</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L241"></a><tt class="py-lineno">241</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt class="py-name">count</tt> <tt class="py-op"><=</tt> <tt class="py-number">0</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L242"></a><tt class="py-lineno">242</tt> <tt class="py-line"> <tt id="link-85" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-85', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Tag # %s has an invalid count: %s. Tag is ignored"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">tag</tt><tt class="py-op">,</tt> <tt class="py-name">count</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L243"></a><tt class="py-lineno">243</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> </tt>
-<a name="L244"></a><tt class="py-lineno">244</tt> <tt class="py-line"> <tt class="py-keyword">if</tt><tt class="py-op">(</tt><tt class="py-name">count</tt> <tt class="py-op">*</tt> <tt id="link-86" class="py-name"><a title="fabio.tifimage.TYPESIZES" class="py-name" href="#" onclick="return doclink('link-86', 'TYPESIZES', 'link-10');">TYPESIZES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op"><=</tt> <tt class="py-numbe [...]
-<a name="L245"></a><tt class="py-lineno">245</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> <tt class="py-op">=</tt> <tt class="py-number">8</tt> </tt>
-<a name="L246"></a><tt class="py-lineno">246</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-87" class="py-name"><a title="fabio.tifimage.Image_File_Directory_entry.extract_data" class="py-name" href="#" onclick="return doclink('link-87', 'extract_data', 'link-84');">extract_data</a></tt><tt class="py-op">(</tt><tt class="py-name">idfentry</tt><tt class="py-op">)</tt> </tt>
-<a name="L247"></a><tt class="py-lineno">247</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L248"></a><tt class="py-lineno">248</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L249"></a><tt class="py-lineno">249</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"L"</tt><tt class="py-op">,</tt> <tt class="py-name">idfentry</tt><tt class="py-op">[</tt><tt class="py-number">8</tt><tt class="py-op">:</tt><tt class="py-op [...]
-<a name="L250"></a><tt class="py-lineno">250</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L251"></a><tt class="py-lineno">251</tt> <tt class="py-line"> </tt>
-<a name="Image_File_Directory_entry.extract_data"></a><div id="Image_File_Directory_entry.extract_data-def"><a name="L252"></a><tt class="py-lineno">252</tt> <a class="py-toggle" href="#" id="Image_File_Directory_entry.extract_data-toggle" onclick="return toggle('Image_File_Directory_entry.extract_data');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.tifimage.Image_File_Directory_entry-class.html#extract_data">extract_data</a><tt class=" [...]
-</div><div id="Image_File_Directory_entry.extract_data-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="Image_File_Directory_entry.extract_data-expanded"><a name="L253"></a><tt class="py-lineno">253</tt> <tt class="py-line"> <tt class="py-name">tag_type</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">tag_type</tt> </tt>
-<a name="L254"></a><tt class="py-lineno">254</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-op">(</tt><tt id="link-88" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-88', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'byte'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L255"></a><tt class="py-lineno">255</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"B"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L256"></a><tt class="py-lineno">256</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-89" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-89', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'short'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L257"></a><tt class="py-lineno">257</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"H"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L258"></a><tt class="py-lineno">258</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-90" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-90', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'long'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L259"></a><tt class="py-lineno">259</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"L"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L260"></a><tt class="py-lineno">260</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-91" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-91', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'sbyte'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L261"></a><tt class="py-lineno">261</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"b"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L262"></a><tt class="py-lineno">262</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-92" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-92', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'sshort'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L263"></a><tt class="py-lineno">263</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"h"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L264"></a><tt class="py-lineno">264</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-93" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-93', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'slong'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L265"></a><tt class="py-lineno">265</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"l"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L266"></a><tt class="py-lineno">266</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-94" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-94', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'ascii'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L267"></a><tt class="py-lineno">267</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt><tt class="py-op">:</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> <tt class="py-op">+</tt> <tt class="py-na [...]
-<a name="L268"></a><tt class="py-lineno">268</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-95" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-95', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'rational'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L269"></a><tt class="py-lineno">269</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L270"></a><tt class="py-lineno">270</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">,</tt> <tt class="py-name">den</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"LL"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name" [...]
-<a name="L271"></a><tt class="py-lineno">271</tt> <tt class="py-line"> <tt class="py-keyword">print</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> </tt>
-<a name="L272"></a><tt class="py-lineno">272</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">)</tt> <tt class="py-op">/</tt> <tt class="py-name">den</tt> </tt>
-<a name="L273"></a><tt class="py-lineno">273</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-96" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-96', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'srational'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L274"></a><tt class="py-lineno">274</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L275"></a><tt class="py-lineno">275</tt> <tt class="py-line"> <tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">,</tt> <tt class="py-name">den</tt><tt class="py-op">)</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"ll"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name" [...]
-<a name="L276"></a><tt class="py-lineno">276</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">float</tt><tt class="py-op">(</tt><tt class="py-name">num</tt><tt class="py-op">)</tt> <tt class="py-op">/</tt> <tt class="py-name">den</tt><tt class="py-op">,</tt> </tt>
-<a name="L277"></a><tt class="py-lineno">277</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-97" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-97', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'float'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L278"></a><tt class="py-lineno">278</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"f"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name" [...]
-<a name="L279"></a><tt class="py-lineno">279</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-op">(</tt><tt id="link-98" class="py-name"><a title="fabio.tifimage.TYPES" class="py-name" href="#" onclick="return doclink('link-98', 'TYPES', 'link-9');">TYPES</a></tt><tt class="py-op">[</tt><tt class="py-name">tag_type</tt><tt class="py-op">]</tt> <tt class="py-op">==</tt> <tt class="py-string">'double'</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L280"></a><tt class="py-lineno">280</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val_offset</tt> <tt class="py-op">!=</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L281"></a><tt class="py-lineno">281</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">val</tt> <tt class="py-op">=</tt> <tt class="py-name">struct</tt><tt class="py-op">.</tt><tt class="py-name">unpack_from</tt><tt class="py-op">(</tt><tt class="py-string">"d"</tt><tt class="py-op">,</tt> <tt class="py-name">full_string</tt><tt class="py-op">[</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-n [...]
-<a name="L282"></a><tt class="py-lineno">282</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L283"></a><tt class="py-lineno">283</tt> <tt class="py-line"> <tt id="link-99" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-99', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"unrecognized type of strInputentry self: %s tag: %s type: %s TYPE: %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-100" class="py-name"><a title="fabio.tifimage.baseline_tiff_tags" class="py-n [...]
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diff --git a/doc/html/fabio.tifimage.Image_File_Directory-class.html b/doc/html/fabio.tifimage.Image_File_Directory-class.html
deleted file mode 100644
index 6a155ca..0000000
--- a/doc/html/fabio.tifimage.Image_File_Directory-class.html
+++ /dev/null
@@ -1,256 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.tifimage.Image_File_Directory</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
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- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
-
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-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.tifimage-module.html">Module tifimage</a> ::
- Class Image_File_Directory
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.tifimage.Image_File_Directory-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class Image_File_Directory</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <strong class="uidshort">Image_File_Directory</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.tifimage.Image_File_Directory-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">instring</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">offset</span>=<span class="summary-sig-default">-1</span>)</span><br />
- x.__init__(...) initializes x; see x.__class__.__doc__ for signature</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="unpack"></a><span class="summary-sig-name">unpack</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">instring</span>,
- <span class="summary-sig-arg">offset</span>=<span class="summary-sig-default">-1</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory.unpack">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
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- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
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-<table class="summary" border="1" cellpadding="3"
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-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
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- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">instring</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">offset</span>=<span class="sig-default">-1</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>x.__init__(...) initializes x; see x.__class__.__doc__ for
- signature</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
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- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
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-
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- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
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-</table>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
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-
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- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.tifimage.Image_File_Directory_entry-class.html b/doc/html/fabio.tifimage.Image_File_Directory_entry-class.html
deleted file mode 100644
index fc95bbc..0000000
--- a/doc/html/fabio.tifimage.Image_File_Directory_entry-class.html
+++ /dev/null
@@ -1,276 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.tifimage.Image_File_Directory_entry</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.tifimage-module.html">Module tifimage</a> ::
- Class Image_File_Directory_entry
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.tifimage.Image_File_Directory_entry-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class Image_File_Directory_entry</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory_entry">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <strong class="uidshort">Image_File_Directory_entry</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.tifimage.Image_File_Directory_entry-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">tag</span>=<span class="summary-sig-default">0</span>,
- <span class="summary-sig-arg">tag_type</span>=<span class="summary-sig-default">0</span>,
- <span class="summary-sig-arg">count</span>=<span class="summary-sig-default">0</span>,
- <span class="summary-sig-arg">offset</span>=<span class="summary-sig-default">0</span>)</span><br />
- x.__init__(...) initializes x; see x.__class__.__doc__ for signature</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory_entry.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="unpack"></a><span class="summary-sig-name">unpack</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">strInput</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory_entry.unpack">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="extract_data"></a><span class="summary-sig-name">extract_data</span>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">full_string</span>)</span></td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory_entry.extract_data">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">tag</span>=<span class="sig-default">0</span>,
- <span class="sig-arg">tag_type</span>=<span class="sig-default">0</span>,
- <span class="sig-arg">count</span>=<span class="sig-default">0</span>,
- <span class="sig-arg">offset</span>=<span class="sig-default">0</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.tifimage-pysrc.html#Image_File_Directory_entry.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>x.__init__(...) initializes x; see x.__class__.__doc__ for
- signature</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.tifimage.Tiff_header-class.html b/doc/html/fabio.tifimage.Tiff_header-class.html
deleted file mode 100644
index 8a076b1..0000000
--- a/doc/html/fabio.tifimage.Tiff_header-class.html
+++ /dev/null
@@ -1,236 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.tifimage.Tiff_header</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.tifimage-module.html">Module tifimage</a> ::
- Class Tiff_header
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.tifimage.Tiff_header-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class Tiff_header</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.tifimage-pysrc.html#Tiff_header">source code</a></span></p>
-<pre class="base-tree">
-object --+
- |
- <strong class="uidshort">Tiff_header</strong>
-</pre>
-
-<hr />
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.tifimage.Tiff_header-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">string</span>)</span><br />
- x.__init__(...) initializes x; see x.__class__.__doc__ for signature</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#Tiff_header.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">string</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.tifimage-pysrc.html#Tiff_header.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>x.__init__(...) initializes x; see x.__class__.__doc__ for
- signature</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- <dd><em class="note">(inherited documentation)</em></dd>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.tifimage.tifimage-class.html b/doc/html/fabio.tifimage.tifimage-class.html
deleted file mode 100644
index 0fd5863..0000000
--- a/doc/html/fabio.tifimage.tifimage-class.html
+++ /dev/null
@@ -1,465 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.tifimage.tifimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.tifimage-module.html">Module tifimage</a> ::
- Class tifimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.tifimage.tifimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class tifimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">tifimage</strong>
-</pre>
-
-<dl><dt>Known Subclasses:</dt>
-<dd>
- <ul class="subclass-list">
-<li><a href="fabio.pilatusimage.pilatusimage-class.html">pilatusimage.pilatusimage</a></li><li>, <a href="fabio.marccdimage.marccdimage-class.html">marccdimage.marccdimage</a></li> </ul>
-</dd></dl>
-
-<hr />
-<p>Images in TIF format Wraps TiffIO</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.tifimage.tifimage-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">*args</span>,
- <span class="summary-sig-arg">**kwds</span>)</span><br />
- Tifimage constructor adds an nbits member attribute</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.tifimage.tifimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Try to read Tiff images header...</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.tifimage.tifimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- Wrapper for TiffIO.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.tifimage.tifimage-class.html#write" class="summary-sig-name">write</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>)</span><br />
- Overrides the fabioimage.write method and provides a simple TIFF
- image writer.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage.write">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="_need_a_seek_to_read"></a><span class="summary-name">_need_a_seek_to_read</span> = <code title="True">True</code>
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">*args</span>,
- <span class="sig-arg">**kwds</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Tifimage constructor adds an nbits member attribute</p>
- <dl class="fields">
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Try to read Tiff images header...</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>Wrapper for TiffIO.</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="write"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">write</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.tifimage-pysrc.html#tifimage.write">source code</a></span>
- </td>
- </tr></table>
-
- <p>Overrides the fabioimage.write method and provides a simple TIFF image
- writer.</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>fname</code></strong> - name of the file to save the image to</li>
- </ul></dd>
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#write">fabioimage.fabioimage.write</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
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- href="module-tree.html">Trees</a> </th>
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- href="identifier-index.html">Indices</a> </th>
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- href="help.html">Help</a> </th>
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- <th class="navbar" width="100%"></th>
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
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-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.xsdimage-module.html b/doc/html/fabio.xsdimage-module.html
deleted file mode 100644
index 5ab9466..0000000
--- a/doc/html/fabio.xsdimage-module.html
+++ /dev/null
@@ -1,184 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.xsdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
-
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- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
-
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- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module xsdimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.xsdimage-module.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== MODULE DESCRIPTION ==================== -->
-<h1 class="epydoc">Module xsdimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.xsdimage-pysrc.html">source code</a></span></p>
-<pre class="literalblock">
-
-Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr
-
-XSDimge are XML files containing numpy arrays
-
-</pre>
-
-<hr />
-<div class="fields"> <p><strong>Author:</strong>
- J\xc3\xa9r\xc3\xb4me Kieffer
- </p>
- <p><strong>Contact:</strong>
- jerome.kieffer at esrf.eu
- </p>
- <p><strong>Copyright:</strong>
- European Synchrotron Radiation Facility, Grenoble, France
- </p>
- <p><strong>License:</strong>
- GPLv3+
- </p>
-</div><!-- ==================== CLASSES ==================== -->
-<a name="section-Classes"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Classes</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Classes"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a href="fabio.xsdimage.xsdimage-class.html" class="summary-name">xsdimage</a><br />
- Read the XSDataImage XML File data format
- </td>
- </tr>
-</table>
-<!-- ==================== VARIABLES ==================== -->
-<a name="section-Variables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Variables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="logger"></a><span class="summary-name">logger</span> = <code title="logging.getLogger("xsdimage")">logging.getLogger("xsdimage")</code>
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <a name="__package__"></a><span class="summary-name">__package__</span> = <code title="'fabio'"><code class="variable-quote">'</code><code class="variable-string">fabio</code><code class="variable-quote">'</code></code>
- </td>
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-</table>
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diff --git a/doc/html/fabio.xsdimage-pysrc.html b/doc/html/fabio.xsdimage-pysrc.html
deleted file mode 100644
index 6143675..0000000
--- a/doc/html/fabio.xsdimage-pysrc.html
+++ /dev/null
@@ -1,443 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.xsdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
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- bgcolor="#a0c0ff" cellspacing="0">
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- <!-- Home link -->
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- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
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- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
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- href="help.html">Help</a> </th>
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-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- Module xsdimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.xsdimage-pysrc.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<h1 class="epydoc">Source Code for <a href="fabio.xsdimage-module.html">Module fabio.xsdimage</a></h1>
-<pre class="py-src">
-<a name="L1"></a><tt class="py-lineno"> 1</tt> <tt class="py-line"><tt class="py-comment">#!/usr/bin/env python</tt> </tt>
-<a name="L2"></a><tt class="py-lineno"> 2</tt> <tt class="py-line"><tt class="py-comment"># coding: utf8</tt> </tt>
-<a name="L3"></a><tt class="py-lineno"> 3</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L4"></a><tt class="py-lineno"> 4</tt> <tt class="py-line"><tt class="py-docstring">Authors: Jérôme Kieffer, ESRF </tt> </tt>
-<a name="L5"></a><tt class="py-lineno"> 5</tt> <tt class="py-line"><tt class="py-docstring"> email:jerome.kieffer at esrf.fr</tt> </tt>
-<a name="L6"></a><tt class="py-lineno"> 6</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L7"></a><tt class="py-lineno"> 7</tt> <tt class="py-line"><tt class="py-docstring">XSDimge are XML files containing numpy arrays </tt> </tt>
-<a name="L8"></a><tt class="py-lineno"> 8</tt> <tt class="py-line"><tt class="py-docstring">"""</tt> </tt>
-<a name="L9"></a><tt class="py-lineno"> 9</tt> <tt class="py-line"><tt class="py-name">__author__</tt> <tt class="py-op">=</tt> <tt class="py-string">"Jérôme Kieffer"</tt> </tt>
-<a name="L10"></a><tt class="py-lineno"> 10</tt> <tt class="py-line"><tt class="py-name">__contact__</tt> <tt class="py-op">=</tt> <tt class="py-string">"jerome.kieffer at esrf.eu"</tt> </tt>
-<a name="L11"></a><tt class="py-lineno"> 11</tt> <tt class="py-line"><tt class="py-name">__license__</tt> <tt class="py-op">=</tt> <tt class="py-string">"GPLv3+"</tt> </tt>
-<a name="L12"></a><tt class="py-lineno"> 12</tt> <tt class="py-line"><tt class="py-name">__copyright__</tt> <tt class="py-op">=</tt> <tt class="py-string">"European Synchrotron Radiation Facility, Grenoble, France"</tt> </tt>
-<a name="L13"></a><tt class="py-lineno"> 13</tt> <tt class="py-line"> </tt>
-<a name="L14"></a><tt class="py-lineno"> 14</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">logging</tt><tt class="py-op">,</tt> <tt class="py-name">numpy</tt> </tt>
-<a name="L15"></a><tt class="py-lineno"> 15</tt> <tt class="py-line"><tt id="link-0" class="py-name" targets="Variable fabio.GEimage.logger=fabio.GEimage-module.html#logger,Variable fabio.HiPiCimage.logger=fabio.HiPiCimage-module.html#logger,Variable fabio.OXDimage.logger=fabio.OXDimage-module.html#logger,Variable fabio.adscimage.logger=fabio.adscimage-module.html#logger,Variable fabio.binaryimage.logger=fabio.binaryimage-module.html#logger,Variable fabio.bruker100image.logger=fabio.bru [...]
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-0', 'logger', 'link-0');">logger</a></tt> <tt class="py-op">=</tt> <tt class="py-name">logging</tt><tt class="py-op">.</tt><tt class="py-name">getLogger</tt><tt class="py-op">(</tt><tt class="py-string">"xsdimage"</tt><tt class="py-op">)</tt> </tt>
-<a name="L16"></a><tt class="py-lineno"> 16</tt> <tt class="py-line"><tt class="py-keyword">from</tt> <tt id="link-1" class="py-name" targets="Module fabio.fabioimage=fabio.fabioimage-module.html,Class fabio.fabioimage.fabioimage=fabio.fabioimage.fabioimage-class.html"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-1', 'fabioimage', 'link-1');">fabioimage</a></tt> <tt class="py-keyword">import</tt> <tt id="link-2" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-2', 'fabioimage', 'link-1');">fabioimage</a></tt> </tt>
-<a name="L17"></a><tt class="py-lineno"> 17</tt> <tt class="py-line"><tt class="py-keyword">import</tt> <tt class="py-name">base64</tt><tt class="py-op">,</tt> <tt class="py-name">hashlib</tt> </tt>
-<a name="L18"></a><tt class="py-lineno"> 18</tt> <tt class="py-line"><tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L19"></a><tt class="py-lineno"> 19</tt> <tt class="py-line"> <tt class="py-keyword">from</tt> <tt class="py-name">lxml</tt> <tt class="py-keyword">import</tt> <tt class="py-name">etree</tt> </tt>
-<a name="L20"></a><tt class="py-lineno"> 20</tt> <tt class="py-line"><tt class="py-keyword">except</tt> <tt class="py-name">ImportError</tt><tt class="py-op">:</tt> </tt>
-<a name="L21"></a><tt class="py-lineno"> 21</tt> <tt class="py-line"> <tt id="link-3" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-3', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"lxml library is probably not part of your python installation: disabling xsdimage format"</tt><tt class="py-op">)</tt> </tt>
-<a name="L22"></a><tt class="py-lineno"> 22</tt> <tt class="py-line"> <tt class="py-name">etree</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L23"></a><tt class="py-lineno"> 23</tt> <tt class="py-line"> </tt>
-<a name="xsdimage"></a><div id="xsdimage-def"><a name="L24"></a><tt class="py-lineno"> 24</tt> <a class="py-toggle" href="#" id="xsdimage-toggle" onclick="return toggle('xsdimage');">-</a><tt class="py-line"><tt class="py-keyword">class</tt> <a class="py-def-name" href="fabio.xsdimage.xsdimage-class.html">xsdimage</a><tt class="py-op">(</tt><tt class="py-base-class">fabioimage</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-</div><div id="xsdimage-collapsed" style="display:none;" pad="+++" indent="++++"></div><div id="xsdimage-expanded"><a name="L25"></a><tt class="py-lineno"> 25</tt> <tt class="py-line"> <tt class="py-docstring">""" </tt> </tt>
-<a name="L26"></a><tt class="py-lineno"> 26</tt> <tt class="py-line"><tt class="py-docstring"> Read the XSDataImage XML File data format </tt> </tt>
-<a name="L27"></a><tt class="py-lineno"> 27</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="xsdimage.__init__"></a><div id="xsdimage.__init__-def"><a name="L28"></a><tt class="py-lineno"> 28</tt> <a class="py-toggle" href="#" id="xsdimage.__init__-toggle" onclick="return toggle('xsdimage.__init__');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.xsdimage.xsdimage-class.html#__init__">__init__</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">data</tt><tt class="py-op" [...]
-</div><div id="xsdimage.__init__-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="xsdimage.__init__-expanded"><a name="L29"></a><tt class="py-lineno"> 29</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L30"></a><tt class="py-lineno"> 30</tt> <tt class="py-line"><tt class="py-docstring"> Constructor of the class XSDataImage.</tt> </tt>
-<a name="L31"></a><tt class="py-lineno"> 31</tt> <tt class="py-line"><tt class="py-docstring"></tt> </tt>
-<a name="L32"></a><tt class="py-lineno"> 32</tt> <tt class="py-line"><tt class="py-docstring"> @param _strFilename: the name of the file to open</tt> </tt>
-<a name="L33"></a><tt class="py-lineno"> 33</tt> <tt class="py-line"><tt class="py-docstring"> @type _strFilename: string</tt> </tt>
-<a name="L34"></a><tt class="py-lineno"> 34</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L35"></a><tt class="py-lineno"> 35</tt> <tt class="py-line"> <tt id="link-4" class="py-name"><a title="fabio.fabioimage
-fabio.fabioimage.fabioimage" class="py-name" href="#" onclick="return doclink('link-4', 'fabioimage', 'link-1');">fabioimage</a></tt><tt class="py-op">.</tt><tt id="link-5" class="py-name" targets="Method fabio.OXDimage.Section.__init__()=fabio.OXDimage.Section-class.html#__init__,Method fabio.TiffIO.TiffIO.__init__()=fabio.TiffIO.TiffIO-class.html#__init__,Method fabio.adscimage.adscimage.__init__()=fabio.adscimage.adscimage-class.html#__init__,Method fabio.binaryimage.binaryimage.__ini [...]
-fabio.TiffIO.TiffIO.__init__
-fabio.adscimage.adscimage.__init__
-fabio.binaryimage.binaryimage.__init__
-fabio.cbfimage.CIF.__init__
-fabio.cbfimage.cbfimage.__init__
-fabio.datIO.fabiodata.__init__
-fabio.dm3image.dm3image.__init__
-fabio.edfimage.Frame.__init__
-fabio.edfimage.edfimage.__init__
-fabio.fabioimage.fabioStream.__init__
-fabio.fabioimage.fabioimage.__init__
-fabio.fabioutils.filename_object.__init__
-fabio.file_series.file_series.__init__
-fabio.file_series.filename_series.__init__
-fabio.file_series.numbered_file_series.__init__
-fabio.mar345image.mar345image.__init__
-fabio.pnmimage.pnmimage.__init__
-fabio.tifimage.Image_File_Directory.__init__
-fabio.tifimage.Image_File_Directory_entry.__init__
-fabio.tifimage.Tiff_header.__init__
-fabio.tifimage.tifimage.__init__
-fabio.xsdimage.xsdimage.__init__" class="py-name" href="#" onclick="return doclink('link-5', '__init__', 'link-5');">__init__</a></tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">,</tt> <tt id="link-6" class="py-name" targets="Variable fabio.edfimage.Frame.data=fabio.edfimage.Frame-class.html#data,Variable fabio.edfimage.edfimage.data=fabio.edfimage.edfimage-class.html#data"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-6', 'data', 'link-6');">data</a></tt><tt class="py-op">=</tt><tt id="link-7" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-7', 'data', 'link-6');">data</a></tt><tt class="py-op">,</tt> <tt id="link-8" class="py-name" targets="Variable fabio.edfimage.edfimage.header=fabio.edfimage.edfimage-class.html#header"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-8', 'header', 'link-8');">header</a></tt><tt class="py-op">=</tt><tt id="link-9" class="py-name"><a title="fabio.edfimage.ed [...]
-<a name="L36"></a><tt class="py-lineno"> 36</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-10" class="py-name" targets="Variable fabio.edfimage.edfimage.dims=fabio.edfimage.edfimage-class.html#dims"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-10', 'dims', 'link-10');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L37"></a><tt class="py-lineno"> 37</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L38"></a><tt class="py-lineno"> 38</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coding</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L39"></a><tt class="py-lineno"> 39</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L40"></a><tt class="py-lineno"> 40</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L41"></a><tt class="py-lineno"> 41</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">md5</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L42"></a><tt class="py-lineno"> 42</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">fname</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L43"></a><tt class="py-lineno"> 43</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L44"></a><tt class="py-lineno"> 44</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-11" class="py-name" targets="Method fabio.GEimage.GEimage.read()=fabio.GEimage.GEimage-class.html#read,Method fabio.GEimage_old.GEimage.read()=fabio.GEimage_old.GEimage-class.html#read,Method fabio.HiPiCimage.HiPiCimage.read()=fabio.HiPiCimage.HiPiCimage-class.html#read,Method fabio.OXDimage.OXDimage.read()=fabio.OXDimage.OXDimage-class.html# [...]
-fabio.GEimage_old.GEimage.read
-fabio.HiPiCimage.HiPiCimage.read
-fabio.OXDimage.OXDimage.read
-fabio.adscimage.adscimage.read
-fabio.binaryimage.binaryimage.read
-fabio.bruker100image.bruker100image.read
-fabio.brukerimage.brukerimage.read
-fabio.cbfimage.cbfimage.read
-fabio.cf_io.read
-fabio.datIO.columnfile.read
-fabio.datIO.fabiodata.read
-fabio.dm3image.dm3image.read
-fabio.edfimage.edfimage.read
-fabio.fabioimage.fabioimage.read
-fabio.fit2dmaskimage.fit2dmaskimage.read
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage.read
-fabio.kcdimage.kcdimage.read
-fabio.mar345image.mar345image.read
-fabio.pnmimage.pnmimage.read
-fabio.tifimage.tifimage.read
-fabio.xsdimage.xsdimage.read" class="py-name" href="#" onclick="return doclink('link-11', 'read', 'link-11');">read</a></tt><tt class="py-op">(</tt><tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-</div><a name="L45"></a><tt class="py-lineno"> 45</tt> <tt class="py-line"> </tt>
-<a name="xsdimage.read"></a><div id="xsdimage.read-def"><a name="L46"></a><tt class="py-lineno"> 46</tt> <a class="py-toggle" href="#" id="xsdimage.read-toggle" onclick="return toggle('xsdimage.read');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.xsdimage.xsdimage-class.html#read">read</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">fname</tt><tt class="py-op">,</tt> <tt class="py-p [...]
-</div><div id="xsdimage.read-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="xsdimage.read-expanded"><a name="L47"></a><tt class="py-lineno"> 47</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L48"></a><tt class="py-lineno"> 48</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L49"></a><tt class="py-lineno"> 49</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-12" class="py-name"><a title="fabio.edfimage.edfimage.header" class="py-name" href="#" onclick="return doclink('link-12', 'header', 'link-8');">header</a></tt> <tt class="py-op">=</tt> <tt class="py-op">{</tt><tt class="py-op">}</tt> </tt>
-<a name="L50"></a><tt class="py-lineno"> 50</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-13" class="py-name" targets="Method fabio.fabioimage.fabioimage.resetvals()=fabio.fabioimage.fabioimage-class.html#resetvals"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-13', 'resetvals', 'link-13');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L51"></a><tt class="py-lineno"> 51</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">filename</tt> <tt class="py-op">=</tt> <tt class="py-name">fname</tt> </tt>
-<a name="L52"></a><tt class="py-lineno"> 52</tt> <tt class="py-line"> <tt class="py-name">infile</tt> <tt class="py-op">=</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-14" class="py-name" targets="Method fabio.fabioimage.fabioimage._open()=fabio.fabioimage.fabioimage-class.html#_open"><a title="fabio.fabioimage.fabioimage._open" class="py-name" href="#" onclick="return doclink('link-14', '_open', 'link-14');">_open</a></tt><tt class="py-op">(</tt><tt clas [...]
-<a name="L53"></a><tt class="py-lineno"> 53</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-15" class="py-name" targets="Method fabio.GEimage.GEimage._readheader()=fabio.GEimage.GEimage-class.html#_readheader,Method fabio.GEimage_old.GEimage._readheader()=fabio.GEimage_old.GEimage-class.html#_readheader,Method fabio.HiPiCimage.HiPiCimage._readheader()=fabio.HiPiCimage.HiPiCimage-class.html#_readheader,Method fabio.OXDimage.OXDimage._rea [...]
-fabio.GEimage_old.GEimage._readheader
-fabio.HiPiCimage.HiPiCimage._readheader
-fabio.OXDimage.OXDimage._readheader
-fabio.adscimage.adscimage._readheader
-fabio.brukerimage.brukerimage._readheader
-fabio.cbfimage.cbfimage._readheader
-fabio.dm3image.dm3image._readheader
-fabio.edfimage.edfimage._readheader
-fabio.fabioimage.fabioimage._readheader
-fabio.fit2dmaskimage.fit2dmaskimage._readheader
-fabio.fit2dspreadsheetimage.fit2dspreadsheetimage._readheader
-fabio.kcdimage.kcdimage._readheader
-fabio.mar345image.mar345image._readheader
-fabio.marccdimage.marccdimage._readheader
-fabio.pilatusimage.pilatusimage._readheader
-fabio.pnmimage.pnmimage._readheader
-fabio.tifimage.tifimage._readheader
-fabio.xsdimage.xsdimage._readheader" class="py-name" href="#" onclick="return doclink('link-15', '_readheader', 'link-15');">_readheader</a></tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L54"></a><tt class="py-lineno"> 54</tt> <tt class="py-line"> </tt>
-<a name="L55"></a><tt class="py-lineno"> 55</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L56"></a><tt class="py-lineno"> 56</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-16" class="py-name" targets="Variable fabio.edfimage.edfimage.dim1=fabio.edfimage.edfimage-class.html#dim1"><a title="fabio.edfimage.edfimage.dim1" class="py-name" href="#" onclick="return doclink('link-16', 'dim1', 'link-16');">dim1</a></tt><tt class="py-op">,</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-17" class=" [...]
-<a name="L57"></a><tt class="py-lineno"> 57</tt> <tt class="py-line"> <tt class="py-keyword">except</tt><tt class="py-op">:</tt> </tt>
-<a name="L58"></a><tt class="py-lineno"> 58</tt> <tt class="py-line"> <tt class="py-keyword">raise</tt> <tt class="py-name">IOError</tt><tt class="py-op">(</tt><tt class="py-string">"XSD file %s is corrupt, no dimensions in it"</tt> <tt class="py-op">%</tt> <tt class="py-name">fname</tt><tt class="py-op">)</tt> </tt>
-<a name="L59"></a><tt class="py-lineno"> 59</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L60"></a><tt class="py-lineno"> 60</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-19" class="py-name" targets="Variable fabio.edfimage.edfimage.bytecode=fabio.edfimage.edfimage-class.html#bytecode"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-19', 'bytecode', 'link-19');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><t [...]
-<a name="L61"></a><tt class="py-lineno"> 61</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-20" class="py-name" targets="Variable fabio.edfimage.edfimage.bpp=fabio.edfimage.edfimage-class.html#bpp"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-20', 'bpp', 'link-20');">bpp</a></tt> <tt class="py-op">=</tt> <tt id="link-21" class="py-name" targets="Method fabio.file_series.file_series.le [...]
-fabio.fabioutils.filename_object.tostring" class="py-name" href="#" onclick="return doclink('link-23', 'tostring', 'link-23');">tostring</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt><tt class="py-op">)</tt> </tt>
-<a name="L62"></a><tt class="py-lineno"> 62</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">TypeError</tt><tt class="py-op">:</tt> </tt>
-<a name="L63"></a><tt class="py-lineno"> 63</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-24" class="py-name"><a title="fabio.edfimage.edfimage.bytecode" class="py-name" href="#" onclick="return doclink('link-24', 'bytecode', 'link-19');">bytecode</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">int32</tt> </tt>
-<a name="L64"></a><tt class="py-lineno"> 64</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-25" class="py-name"><a title="fabio.edfimage.edfimage.bpp" class="py-name" href="#" onclick="return doclink('link-25', 'bpp', 'link-20');">bpp</a></tt> <tt class="py-op">=</tt> <tt class="py-number">32</tt> </tt>
-<a name="L65"></a><tt class="py-lineno"> 65</tt> <tt class="py-line"> <tt id="link-26" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-26', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Defaulting type to int32"</tt><tt class="py-op">)</tt> </tt>
-<a name="L66"></a><tt class="py-lineno"> 66</tt> <tt class="py-line"> </tt>
-<a name="L67"></a><tt class="py-lineno"> 67</tt> <tt class="py-line"> <tt class="py-name">exp_size</tt> <tt class="py-op">=</tt> <tt class="py-number">1</tt> </tt>
-<a name="L68"></a><tt class="py-lineno"> 68</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-27" class="py-name" targets="Variable fabio.fabioutils.i=fabio.fabioutils-module.html#i"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-27', 'i', 'link-27');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-28" class="py-name"><a title="fabio.edfimage.edfimage.dims" clas [...]
-<a name="L69"></a><tt class="py-lineno"> 69</tt> <tt class="py-line"> <tt class="py-name">exp_size</tt> <tt class="py-op">*=</tt> <tt id="link-29" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-29', 'i', 'link-27');">i</a></tt> </tt>
-<a name="L70"></a><tt class="py-lineno"> 70</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">exp_size</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> </tt>
-<a name="L71"></a><tt class="py-lineno"> 71</tt> <tt class="py-line"> </tt>
-<a name="L72"></a><tt class="py-lineno"> 72</tt> <tt class="py-line"> <tt class="py-name">decData</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L73"></a><tt class="py-lineno"> 73</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coding</tt> <tt class="py-op">==</tt> <tt class="py-string">"base64"</tt><tt class="py-op">:</tt> </tt>
-<a name="L74"></a><tt class="py-lineno"> 74</tt> <tt class="py-line"> <tt class="py-name">decData</tt> <tt class="py-op">=</tt> <tt class="py-name">base64</tt><tt class="py-op">.</tt><tt class="py-name">b64decode</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> </tt>
-<a name="L75"></a><tt class="py-lineno"> 75</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coding</tt> <tt class="py-op">==</tt> <tt class="py-string">"base32"</tt><tt class="py-op">:</tt> </tt>
-<a name="L76"></a><tt class="py-lineno"> 76</tt> <tt class="py-line"> <tt class="py-name">decData</tt> <tt class="py-op">=</tt> <tt class="py-name">base64</tt><tt class="py-op">.</tt><tt class="py-name">b32decode</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> </tt>
-<a name="L77"></a><tt class="py-lineno"> 77</tt> <tt class="py-line"> <tt class="py-keyword">elif</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coding</tt> <tt class="py-op">==</tt> <tt class="py-string">"base16"</tt><tt class="py-op">:</tt> </tt>
-<a name="L78"></a><tt class="py-lineno"> 78</tt> <tt class="py-line"> <tt class="py-name">decData</tt> <tt class="py-op">=</tt> <tt class="py-name">base64</tt><tt class="py-op">.</tt><tt class="py-name">b16decode</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> </tt>
-<a name="L79"></a><tt class="py-lineno"> 79</tt> <tt class="py-line"> <tt class="py-keyword">else</tt><tt class="py-op">:</tt> </tt>
-<a name="L80"></a><tt class="py-lineno"> 80</tt> <tt class="py-line"> <tt id="link-30" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-30', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"Unable to recognize the encoding of the data !!! got %s, expected base64, base32 or base16, I assume it is base64 "</tt> <tt class="py-op">%</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coding</tt><tt class="py-op">)</tt> </tt>
-<a name="L81"></a><tt class="py-lineno"> 81</tt> <tt class="py-line"> <tt class="py-name">decData</tt> <tt class="py-op">=</tt> <tt class="py-name">base64</tt><tt class="py-op">.</tt><tt class="py-name">b64decode</tt><tt class="py-op">(</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt><tt class="py-op">)</tt> </tt>
-<a name="L82"></a><tt class="py-lineno"> 82</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">md5</tt><tt class="py-op">:</tt> </tt>
-<a name="L83"></a><tt class="py-lineno"> 83</tt> <tt class="py-line"> <tt class="py-keyword">assert</tt> <tt class="py-name">hashlib</tt><tt class="py-op">.</tt><tt class="py-name">md5</tt><tt class="py-op">(</tt><tt class="py-name">decData</tt><tt class="py-op">)</tt><tt class="py-op">.</tt><tt class="py-name">hexdigest</tt><tt class="py-op">(</tt><tt class="py-op">)</tt> <tt class="py-op">==</tt> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">md5< [...]
-<a name="L84"></a><tt class="py-lineno"> 84</tt> <tt class="py-line"> </tt>
-<a name="L85"></a><tt class="py-lineno"> 85</tt> <tt class="py-line"> </tt>
-<a name="L86"></a><tt class="py-lineno"> 86</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-31" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-31', 'data', 'link-6');">data</a></tt> <tt class="py-op">=</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">fromstring</tt><tt class="py-op">(</tt><tt class="py-name">decData</tt><tt class="py-op">,</tt> <tt class="py-name">dtype</tt><tt class="py-op">=</tt><tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-32" class="py-name"><a title="fabio.edfimage.edfimage [...]
-<a name="L87"></a><tt class="py-lineno"> 87</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-keyword">not</tt> <tt class="py-name">numpy</tt><tt class="py-op">.</tt><tt class="py-name">little_endian</tt><tt class="py-op">:</tt> <tt class="py-comment">#by default little endian</tt> </tt>
-<a name="L88"></a><tt class="py-lineno"> 88</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-34" class="py-name"><a title="fabio.edfimage.Frame.data
-fabio.edfimage.edfimage.data" class="py-name" href="#" onclick="return doclink('link-34', 'data', 'link-6');">data</a></tt><tt class="py-op">.</tt><tt class="py-name">byteswap</tt><tt class="py-op">(</tt><tt class="py-name">inplace</tt><tt class="py-op">=</tt><tt class="py-name">True</tt><tt class="py-op">)</tt> </tt>
-<a name="L89"></a><tt class="py-lineno"> 89</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-35" class="py-name"><a title="fabio.fabioimage.fabioimage.resetvals" class="py-name" href="#" onclick="return doclink('link-35', 'resetvals', 'link-13');">resetvals</a></tt><tt class="py-op">(</tt><tt class="py-op">)</tt> </tt>
-<a name="L90"></a><tt class="py-lineno"> 90</tt> <tt class="py-line"><tt class="py-comment"># # ensure the PIL image is reset</tt> </tt>
-<a name="L91"></a><tt class="py-lineno"> 91</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">pilimage</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L92"></a><tt class="py-lineno"> 92</tt> <tt class="py-line"> <tt class="py-keyword">return</tt> <tt class="py-name">self</tt> </tt>
-</div><a name="L93"></a><tt class="py-lineno"> 93</tt> <tt class="py-line"> </tt>
-<a name="xsdimage._readheader"></a><div id="xsdimage._readheader-def"><a name="L94"></a><tt class="py-lineno"> 94</tt> <a class="py-toggle" href="#" id="xsdimage._readheader-toggle" onclick="return toggle('xsdimage._readheader');">-</a><tt class="py-line"> <tt class="py-keyword">def</tt> <a class="py-def-name" href="fabio.xsdimage.xsdimage-class.html#_readheader">_readheader</a><tt class="py-op">(</tt><tt class="py-param">self</tt><tt class="py-op">,</tt> <tt class="py-param">infile</ [...]
-</div><div id="xsdimage._readheader-collapsed" style="display:none;" pad="+++" indent="++++++++"></div><div id="xsdimage._readheader-expanded"><a name="L95"></a><tt class="py-lineno"> 95</tt> <tt class="py-line"> <tt class="py-docstring">"""</tt> </tt>
-<a name="L96"></a><tt class="py-lineno"> 96</tt> <tt class="py-line"><tt class="py-docstring"> Read all headers in a file and populate self.header</tt> </tt>
-<a name="L97"></a><tt class="py-lineno"> 97</tt> <tt class="py-line"><tt class="py-docstring"> data is not yet populated</tt> </tt>
-<a name="L98"></a><tt class="py-lineno"> 98</tt> <tt class="py-line"><tt class="py-docstring"> @type infile: file object open in read mode</tt> </tt>
-<a name="L99"></a><tt class="py-lineno"> 99</tt> <tt class="py-line"><tt class="py-docstring"> """</tt> </tt>
-<a name="L100"></a><tt class="py-lineno">100</tt> <tt class="py-line"> <tt class="py-name">xml</tt> <tt class="py-op">=</tt> <tt class="py-name">etree</tt><tt class="py-op">.</tt><tt class="py-name">parse</tt><tt class="py-op">(</tt><tt class="py-name">infile</tt><tt class="py-op">)</tt> </tt>
-<a name="L101"></a><tt class="py-lineno">101</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-36" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-36', 'dims', 'link-10');">dims</a></tt> <tt class="py-op">=</tt> <tt class="py-op">[</tt><tt class="py-op">]</tt> </tt>
-<a name="L102"></a><tt class="py-lineno">102</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-37" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-37', 'i', 'link-27');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">xpath</tt><tt class="py-op">(</tt><tt class="py-string">"//shape"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L103"></a><tt class="py-lineno">103</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L104"></a><tt class="py-lineno">104</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt id="link-38" class="py-name"><a title="fabio.edfimage.edfimage.dims" class="py-name" href="#" onclick="return doclink('link-38', 'dims', 'link-10');">dims</a></tt><tt class="py-op">.</tt><tt class="py-name">append</tt><tt class="py-op">(</tt><tt class="py-name">int</tt><tt class="py-op">(</tt><tt id="link-39" class="py-name"><a title="fabio.fabio [...]
-<a name="L105"></a><tt class="py-lineno">105</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">ValueError</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt> </tt>
-<a name="L106"></a><tt class="py-lineno">106</tt> <tt class="py-line"> <tt id="link-40" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-40', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"%s Shape: Unable to convert %s to integer in %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">error</tt><tt class="py-op">,</tt> <tt id="link-41" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink [...]
-<a name="L107"></a><tt class="py-lineno">107</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-43" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-43', 'i', 'link-27');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">xpath</tt><tt class="py-op">(</tt><tt class="py-string">"//size"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L108"></a><tt class="py-lineno">108</tt> <tt class="py-line"> <tt class="py-keyword">try</tt><tt class="py-op">:</tt> </tt>
-<a name="L109"></a><tt class="py-lineno">109</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">size</tt> <tt class="py-op">=</tt> <tt class="py-name">int</tt><tt class="py-op">(</tt><tt id="link-44" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-44', 'i', 'link-27');">i</a></tt><tt class="py-op">.</tt><tt class="py-name">text</tt><tt class="py-op">)</tt> </tt>
-<a name="L110"></a><tt class="py-lineno">110</tt> <tt class="py-line"> <tt class="py-keyword">except</tt> <tt class="py-name">Exception</tt><tt class="py-op">,</tt> <tt class="py-name">error</tt><tt class="py-op">:</tt><tt class="py-comment">#IGNORE:W0703</tt> </tt>
-<a name="L111"></a><tt class="py-lineno">111</tt> <tt class="py-line"> <tt id="link-45" class="py-name"><a title="fabio.GEimage.logger
-fabio.HiPiCimage.logger
-fabio.OXDimage.logger
-fabio.adscimage.logger
-fabio.binaryimage.logger
-fabio.bruker100image.logger
-fabio.brukerimage.logger
-fabio.cbfimage.logger
-fabio.compression.logger
-fabio.converters.logger
-fabio.dm3image.logger
-fabio.edfimage.logger
-fabio.fabioimage.logger
-fabio.fabioutils.logger
-fabio.file_series.logger
-fabio.kcdimage.logger
-fabio.mar345image.logger
-fabio.marccdimage.logger
-fabio.openimage.logger
-fabio.pnmimage.logger
-fabio.readbytestream.logger
-fabio.tifimage.logger
-fabio.xsdimage.logger" class="py-name" href="#" onclick="return doclink('link-45', 'logger', 'link-0');">logger</a></tt><tt class="py-op">.</tt><tt class="py-name">warning</tt><tt class="py-op">(</tt><tt class="py-string">"%s Size: Unable to convert %s to integer in %s"</tt> <tt class="py-op">%</tt> <tt class="py-op">(</tt><tt class="py-name">error</tt><tt class="py-op">,</tt> <tt id="link-46" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink( [...]
-<a name="L112"></a><tt class="py-lineno">112</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L113"></a><tt class="py-lineno">113</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-48" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-48', 'i', 'link-27');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">xpath</tt><tt class="py-op">(</tt><tt class="py-string">"//dtype"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L114"></a><tt class="py-lineno">114</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">dtype</tt> <tt class="py-op">=</tt> <tt id="link-49" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-49', 'i', 'link-27');">i</a></tt><tt class="py-op">.</tt><tt class="py-name">text</tt> </tt>
-<a name="L115"></a><tt class="py-lineno">115</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coding</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L116"></a><tt class="py-lineno">116</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-50" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-50', 'i', 'link-27');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">xpath</tt><tt class="py-op">(</tt><tt class="py-string">"//coding"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L117"></a><tt class="py-lineno">117</tt> <tt class="py-line"> <tt class="py-name">j</tt> <tt class="py-op">=</tt> <tt id="link-51" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-51', 'i', 'link-27');">i</a></tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"value"</tt><tt class="py-op">)</tt> </tt>
-<a name="L118"></a><tt class="py-lineno">118</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">j</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L119"></a><tt class="py-lineno">119</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">coding</tt> <tt class="py-op">=</tt> <tt class="py-name">j</tt><tt class="py-op">.</tt><tt class="py-name">text</tt> </tt>
-<a name="L120"></a><tt class="py-lineno">120</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L121"></a><tt class="py-lineno">121</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-52" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-52', 'i', 'link-27');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">xpath</tt><tt class="py-op">(</tt><tt class="py-string">"//data"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L122"></a><tt class="py-lineno">122</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">rawData</tt> <tt class="py-op">=</tt> <tt id="link-53" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-53', 'i', 'link-27');">i</a></tt><tt class="py-op">.</tt><tt class="py-name">text</tt> </tt>
-<a name="L123"></a><tt class="py-lineno">123</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">md5</tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L124"></a><tt class="py-lineno">124</tt> <tt class="py-line"> <tt class="py-keyword">for</tt> <tt id="link-54" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-54', 'i', 'link-27');">i</a></tt> <tt class="py-keyword">in</tt> <tt class="py-name">xml</tt><tt class="py-op">.</tt><tt class="py-name">xpath</tt><tt class="py-op">(</tt><tt class="py-string">"//md5sum"</tt><tt class="py-op">)</tt><tt class="py-op">:</tt> </tt>
-<a name="L125"></a><tt class="py-lineno">125</tt> <tt class="py-line"> <tt class="py-name">j</tt> <tt class="py-op">=</tt> <tt id="link-55" class="py-name"><a title="fabio.fabioutils.i" class="py-name" href="#" onclick="return doclink('link-55', 'i', 'link-27');">i</a></tt><tt class="py-op">.</tt><tt class="py-name">find</tt><tt class="py-op">(</tt><tt class="py-string">"value"</tt><tt class="py-op">)</tt> </tt>
-<a name="L126"></a><tt class="py-lineno">126</tt> <tt class="py-line"> <tt class="py-keyword">if</tt> <tt class="py-name">j</tt> <tt class="py-keyword">is</tt> <tt class="py-keyword">not</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L127"></a><tt class="py-lineno">127</tt> <tt class="py-line"> <tt class="py-name">self</tt><tt class="py-op">.</tt><tt class="py-name">md5</tt> <tt class="py-op">=</tt> <tt class="py-name">j</tt><tt class="py-op">.</tt><tt class="py-name">text</tt> </tt>
-</div></div><a name="L128"></a><tt class="py-lineno">128</tt> <tt class="py-line"> </tt>
-<a name="L129"></a><tt class="py-lineno">129</tt> <tt class="py-line"><tt class="py-keyword">if</tt> <tt class="py-name">etree</tt> <tt class="py-keyword">is</tt> <tt class="py-name">None</tt><tt class="py-op">:</tt> </tt>
-<a name="L130"></a><tt class="py-lineno">130</tt> <tt class="py-line"> <tt id="link-56" class="py-name" targets="Module fabio.xsdimage=fabio.xsdimage-module.html,Class fabio.xsdimage.xsdimage=fabio.xsdimage.xsdimage-class.html"><a title="fabio.xsdimage
-fabio.xsdimage.xsdimage" class="py-name" href="#" onclick="return doclink('link-56', 'xsdimage', 'link-56');">xsdimage</a></tt> <tt class="py-op">=</tt> <tt class="py-name">None</tt> </tt>
-<a name="L131"></a><tt class="py-lineno">131</tt> <tt class="py-line"> </tt><script type="text/javascript">
-<!--
-expandto(location.href);
-// -->
-</script>
-</pre>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
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- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:28 2012
- </td>
- <td align="right" class="footer">
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- >http://epydoc.sourceforge.net</a>
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- <!--
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- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/fabio.xsdimage.xsdimage-class.html b/doc/html/fabio.xsdimage.xsdimage-class.html
deleted file mode 100644
index 89a4597..0000000
--- a/doc/html/fabio.xsdimage.xsdimage-class.html
+++ /dev/null
@@ -1,419 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio.xsdimage.xsdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%">
- <span class="breadcrumbs">
- <a href="fabio-module.html">Package fabio</a> ::
- <a href="fabio.xsdimage-module.html">Module xsdimage</a> ::
- Class xsdimage
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="fabio.xsdimage.xsdimage-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class xsdimage</h1><p class="nomargin-top"><span class="codelink"><a href="fabio.xsdimage-pysrc.html#xsdimage">source code</a></span></p>
-<pre class="base-tree">
- object --+
- |
-<a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a> --+
- |
- <strong class="uidshort">xsdimage</strong>
-</pre>
-
-<hr />
-<p>Read the XSDataImage XML File data format</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Instance Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-InstanceMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.xsdimage.xsdimage-class.html#__init__" class="summary-sig-name">__init__</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">data</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">header</span>=<span class="summary-sig-default">None</span>,
- <span class="summary-sig-arg">fname</span>=<span class="summary-sig-default">None</span>)</span><br />
- Constructor of the class XSDataImage.</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.xsdimage-pysrc.html#xsdimage.__init__">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.xsdimage.xsdimage-class.html#_readheader" class="summary-sig-name" onclick="show_private();">_readheader</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">infile</span>)</span><br />
- Read all headers in a file and populate self.header data is not yet
- populated</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.xsdimage-pysrc.html#xsdimage._readheader">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="fabio.xsdimage.xsdimage-class.html#read" class="summary-sig-name">read</a>(<span class="summary-sig-arg">self</span>,
- <span class="summary-sig-arg">fname</span>,
- <span class="summary-sig-arg">frame</span>=<span class="summary-sig-default">None</span>)</span><br />
- To be overridden - fill in self.header and self.data</td>
- <td align="right" valign="top">
- <span class="codelink"><a href="fabio.xsdimage-pysrc.html#xsdimage.read">source code</a></span>
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#add">add</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#convert">convert</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getheader">getheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getmin">getmin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#load">load</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#make_slice">make_slice</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#next">next</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#previous">previous</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readROI">readROI</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#readheader">readheader</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#rebin">rebin</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#resetvals">resetvals</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#save">save</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#toPIL16">toPIL16</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#update_header">update_header</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#write">write</a></code>
- </p>
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_compressed_stream" onclick="show_private();">_compressed_stream</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_open" onclick="show_private();">_open</a></code>
- </p></div>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__format__</code>,
- <code>__getattribute__</code>,
- <code>__hash__</code>,
- <code>__new__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__repr__</code>,
- <code>__setattr__</code>,
- <code>__sizeof__</code>,
- <code>__str__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== STATIC METHODS ==================== -->
-<a name="section-StaticMethods"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Static Methods</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-StaticMethods"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkData">checkData</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#checkHeader">checkHeader</a></code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== CLASS VARIABLES ==================== -->
-<a name="section-ClassVariables"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Class Variables</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-ClassVariables"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <div class="private"> <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b> (private):
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_real_file" onclick="show_private();">_need_a_real_file</a></code>,
- <code><a href="fabio.fabioimage.fabioimage-class.html#_need_a_seek_to_read" onclick="show_private();">_need_a_seek_to_read</a></code>
- </p></div>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code><a href="fabio.fabioimage.fabioimage-class.html">fabioimage.fabioimage</a></code></b>:
- <code><a href="fabio.fabioimage.fabioimage-class.html#classname">classname</a></code>
- </p>
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__init__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__init__</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">data</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">header</span>=<span class="sig-default">None</span>,
- <span class="sig-arg">fname</span>=<span class="sig-default">None</span>)</span>
- <br /><em class="fname">(Constructor)</em>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.xsdimage-pysrc.html#xsdimage.__init__">source code</a></span>
- </td>
- </tr></table>
-
- <p>Constructor of the class XSDataImage.</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>_strFilename</code></strong> (string) - the name of the file to open</li>
- </ul></dd>
- <dt>Overrides:
- object.__init__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="_readheader"></a>
-<div class="private">
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">_readheader</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">infile</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.xsdimage-pysrc.html#xsdimage._readheader">source code</a></span>
- </td>
- </tr></table>
-
- <p>Read all headers in a file and populate self.header data is not yet
- populated</p>
- <dl class="fields">
- <dt>Parameters:</dt>
- <dd><ul class="nomargin-top">
- <li><strong class="pname"><code>infile</code></strong> (file object open in read mode)</li>
- </ul></dd>
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#_readheader" onclick="show_private();">fabioimage.fabioimage._readheader</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="read"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">read</span>(<span class="sig-arg">self</span>,
- <span class="sig-arg">fname</span>,
- <span class="sig-arg">frame</span>=<span class="sig-default">None</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- ><span class="codelink"><a href="fabio.xsdimage-pysrc.html#xsdimage.read">source code</a></span>
- </td>
- </tr></table>
-
- <p>To be overridden - fill in self.header and self.data</p>
- <dl class="fields">
- <dt>Overrides:
- <a href="fabio.fabioimage.fabioimage-class.html#read">fabioimage.fabioimage.read</a>
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/frames.html b/doc/html/frames.html
deleted file mode 100644
index f80bd72..0000000
--- a/doc/html/frames.html
+++ /dev/null
@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="iso-8859-1"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Frameset//EN"
- "DTD/xhtml1-frameset.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title> API Documentation </title>
-</head>
-<frameset cols="20%,80%">
- <frameset rows="30%,70%">
- <frame src="toc.html" name="moduleListFrame"
- id="moduleListFrame" />
- <frame src="toc-everything.html" name="moduleFrame"
- id="moduleFrame" />
- </frameset>
- <frame src="fabio-module.html" name="mainFrame" id="mainFrame" />
-</frameset>
-</html>
diff --git a/doc/html/help.html b/doc/html/help.html
deleted file mode 100644
index 33a2e84..0000000
--- a/doc/html/help.html
+++ /dev/null
@@ -1,268 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>Help</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th bgcolor="#70b0f0" class="navbar-select"
- > Help </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%"> </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="help.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-
-<h1 class="epydoc"> API Documentation </h1>
-
-<p> This document contains the API (Application Programming Interface)
-documentation for this project. Documentation for the Python
-objects defined by the project is divided into separate pages for each
-package, module, and class. The API documentation also includes two
-pages containing information about the project as a whole: a trees
-page, and an index page. </p>
-
-<h2> Object Documentation </h2>
-
- <p>Each <strong>Package Documentation</strong> page contains: </p>
- <ul>
- <li> A description of the package. </li>
- <li> A list of the modules and sub-packages contained by the
- package. </li>
- <li> A summary of the classes defined by the package. </li>
- <li> A summary of the functions defined by the package. </li>
- <li> A summary of the variables defined by the package. </li>
- <li> A detailed description of each function defined by the
- package. </li>
- <li> A detailed description of each variable defined by the
- package. </li>
- </ul>
-
- <p>Each <strong>Module Documentation</strong> page contains:</p>
- <ul>
- <li> A description of the module. </li>
- <li> A summary of the classes defined by the module. </li>
- <li> A summary of the functions defined by the module. </li>
- <li> A summary of the variables defined by the module. </li>
- <li> A detailed description of each function defined by the
- module. </li>
- <li> A detailed description of each variable defined by the
- module. </li>
- </ul>
-
- <p>Each <strong>Class Documentation</strong> page contains: </p>
- <ul>
- <li> A class inheritance diagram. </li>
- <li> A list of known subclasses. </li>
- <li> A description of the class. </li>
- <li> A summary of the methods defined by the class. </li>
- <li> A summary of the instance variables defined by the class. </li>
- <li> A summary of the class (static) variables defined by the
- class. </li>
- <li> A detailed description of each method defined by the
- class. </li>
- <li> A detailed description of each instance variable defined by the
- class. </li>
- <li> A detailed description of each class (static) variable defined
- by the class. </li>
- </ul>
-
-<h2> Project Documentation </h2>
-
- <p> The <strong>Trees</strong> page contains the module and class hierarchies: </p>
- <ul>
- <li> The <em>module hierarchy</em> lists every package and module, with
- modules grouped into packages. At the top level, and within each
- package, modules and sub-packages are listed alphabetically. </li>
- <li> The <em>class hierarchy</em> lists every class, grouped by base
- class. If a class has more than one base class, then it will be
- listed under each base class. At the top level, and under each base
- class, classes are listed alphabetically. </li>
- </ul>
-
- <p> The <strong>Index</strong> page contains indices of terms and
- identifiers: </p>
- <ul>
- <li> The <em>term index</em> lists every term indexed by any object's
- documentation. For each term, the index provides links to each
- place where the term is indexed. </li>
- <li> The <em>identifier index</em> lists the (short) name of every package,
- module, class, method, function, variable, and parameter. For each
- identifier, the index provides a short description, and a link to
- its documentation. </li>
- </ul>
-
-<h2> The Table of Contents </h2>
-
-<p> The table of contents occupies the two frames on the left side of
-the window. The upper-left frame displays the <em>project
-contents</em>, and the lower-left frame displays the <em>module
-contents</em>: </p>
-
-<table class="help summary" border="1" cellspacing="0" cellpadding="3">
- <tr style="height: 30%">
- <td align="center" style="font-size: small">
- Project<br />Contents<hr />...</td>
- <td align="center" style="font-size: small" rowspan="2" width="70%">
- API<br />Documentation<br />Frame<br /><br /><br />
- </td>
- </tr>
- <tr>
- <td align="center" style="font-size: small">
- Module<br />Contents<hr /> <br />...<br />
- </td>
- </tr>
-</table><br />
-
-<p> The <strong>project contents frame</strong> contains a list of all packages
-and modules that are defined by the project. Clicking on an entry
-will display its contents in the module contents frame. Clicking on a
-special entry, labeled "Everything," will display the contents of
-the entire project. </p>
-
-<p> The <strong>module contents frame</strong> contains a list of every
-submodule, class, type, exception, function, and variable defined by a
-module or package. Clicking on an entry will display its
-documentation in the API documentation frame. Clicking on the name of
-the module, at the top of the frame, will display the documentation
-for the module itself. </p>
-
-<p> The "<strong>frames</strong>" and "<strong>no frames</strong>" buttons below the top
-navigation bar can be used to control whether the table of contents is
-displayed or not. </p>
-
-<h2> The Navigation Bar </h2>
-
-<p> A navigation bar is located at the top and bottom of every page.
-It indicates what type of page you are currently viewing, and allows
-you to go to related pages. The following table describes the labels
-on the navigation bar. Note that not some labels (such as
-[Parent]) are not displayed on all pages. </p>
-
-<table class="summary" border="1" cellspacing="0" cellpadding="3" width="100%">
-<tr class="summary">
- <th>Label</th>
- <th>Highlighted when...</th>
- <th>Links to...</th>
-</tr>
- <tr><td valign="top"><strong>[Parent]</strong></td>
- <td valign="top"><em>(never highlighted)</em></td>
- <td valign="top"> the parent of the current package </td></tr>
- <tr><td valign="top"><strong>[Package]</strong></td>
- <td valign="top">viewing a package</td>
- <td valign="top">the package containing the current object
- </td></tr>
- <tr><td valign="top"><strong>[Module]</strong></td>
- <td valign="top">viewing a module</td>
- <td valign="top">the module containing the current object
- </td></tr>
- <tr><td valign="top"><strong>[Class]</strong></td>
- <td valign="top">viewing a class </td>
- <td valign="top">the class containing the current object</td></tr>
- <tr><td valign="top"><strong>[Trees]</strong></td>
- <td valign="top">viewing the trees page</td>
- <td valign="top"> the trees page </td></tr>
- <tr><td valign="top"><strong>[Index]</strong></td>
- <td valign="top">viewing the index page</td>
- <td valign="top"> the index page </td></tr>
- <tr><td valign="top"><strong>[Help]</strong></td>
- <td valign="top">viewing the help page</td>
- <td valign="top"> the help page </td></tr>
-</table>
-
-<p> The "<strong>show private</strong>" and "<strong>hide private</strong>" buttons below
-the top navigation bar can be used to control whether documentation
-for private objects is displayed. Private objects are usually defined
-as objects whose (short) names begin with a single underscore, but do
-not end with an underscore. For example, "<code>_x</code>",
-"<code>__pprint</code>", and "<code>epydoc.epytext._tokenize</code>"
-are private objects; but "<code>re.sub</code>",
-"<code>__init__</code>", and "<code>type_</code>" are not. However,
-if a module defines the "<code>__all__</code>" variable, then its
-contents are used to decide which objects are private. </p>
-
-<p> A timestamp below the bottom navigation bar indicates when each
-page was last updated. </p>
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th bgcolor="#70b0f0" class="navbar-select"
- > Help </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:26 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
- </td>
- </tr>
-</table>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/identifier-index.html b/doc/html/identifier-index.html
deleted file mode 100644
index a276e6e..0000000
--- a/doc/html/identifier-index.html
+++ /dev/null
@@ -1,1649 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>Identifier Index</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th bgcolor="#70b0f0" class="navbar-select"
- > Indices </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table width="100%" cellpadding="0" cellspacing="0">
- <tr valign="top">
- <td width="100%"> </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span></td></tr>
- <tr><td align="right"><span class="options"
- >[<a href="frames.html" target="_top">frames</a
- >] | <a href="identifier-index.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
- </td>
- </tr>
-</table>
-<table border="0" width="100%">
-<tr valign="bottom"><td>
-<h1 class="epydoc">Identifier Index</h1>
-</td><td>
-[
- <a href="#A">A</a>
- <a href="#B">B</a>
- <a href="#C">C</a>
- <a href="#D">D</a>
- <a href="#E">E</a>
- <a href="#F">F</a>
- <a href="#G">G</a>
- <a href="#H">H</a>
- <a href="#I">I</a>
- <a href="#J">J</a>
- <a href="#K">K</a>
- <a href="#L">L</a>
- <a href="#M">M</a>
- <a href="#N">N</a>
- <a href="#O">O</a>
- <a href="#P">P</a>
- Q
- <a href="#R">R</a>
- <a href="#S">S</a>
- <a href="#T">T</a>
- <a href="#U">U</a>
- <a href="#V">V</a>
- <a href="#W">W</a>
- <a href="#X">X</a>
- Y
- Z
- <a href="#_">_</a>
-]
-</td></table>
-<table border="0" width="100%">
-<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="A">A</a></h2></td>
-<td valign="top">
-<table class="link-index" width="100%" border="1">
-<tr>
-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioimage-class.html#add">add()</a><br />
-<span class="index-where">(in <a href="fabio.fabioimage.fabioimage-class.html">fabioimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.adscimage.adscimage-class.html">adscimage</a><br />
-<span class="index-where">(in <a href="fabio.adscimage-module.html">fabio.adscimage</a>)</span></td>
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-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#delCapsHeader">delCapsHeader()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.openimage-module.html#do_magic">do_magic()</a><br />
-<span class="index-where">(in <a href="fabio.openimage-module.html">fabio.openimage</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.compression-module.html#decByteOffet_python">decByteOffet_python()</a><br />
-<span class="index-where">(in <a href="fabio.compression-module.html">fabio.compression</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#delData">delData()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-<td width="33%" class="link-index"> </td>
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-</td></tr>
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-<table class="link-index" width="100%" border="1">
-<tr>
-<td width="33%" class="link-index"><a href="fabio.edfimage-module.html">edfimage</a><br />
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-<td width="33%" class="link-index"><a href="fabio.cbfimage.CIF-class.html#EOL">EOL</a><br />
-<span class="index-where">(in <a href="fabio.cbfimage.CIF-class.html">CIF</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.cbfimage.CIF-class.html#existsInLoop">existsInLoop()</a><br />
-<span class="index-where">(in <a href="fabio.cbfimage.CIF-class.html">CIF</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html">edfimage</a><br />
-<span class="index-where">(in <a href="fabio.edfimage-module.html">fabio.edfimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.binaryimage.binaryimage-class.html#estimate_offset_value">estimate_offset_value()</a><br />
-<span class="index-where">(in <a href="fabio.binaryimage.binaryimage-class.html">binaryimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.tifimage.Image_File_Directory_entry-class.html#extract_data">extract_data()</a><br />
-<span class="index-where">(in <a href="fabio.tifimage.Image_File_Directory_entry-class.html">Image_File_Directory_entry</a>)</span></td>
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-<tr>
-<td width="33%" class="link-index"><a href="fabio.compression-module.html#endianness">endianness()</a><br />
-<span class="index-where">(in <a href="fabio.compression-module.html">fabio.compression</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.cbfimage.CIF-class.html#exists">exists()</a><br />
-<span class="index-where">(in <a href="fabio.cbfimage.CIF-class.html">CIF</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fabioutils-module.html#extract_filenumber">extract_filenumber()</a><br />
-<span class="index-where">(in <a href="fabio.fabioutils-module.html">fabio.fabioutils</a>)</span></td>
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-</table>
-</td></tr>
-<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="F">F</a></h2></td>
-<td valign="top">
-<table class="link-index" width="100%" border="1">
-<tr>
-<td width="33%" class="link-index"><a href="fabio-module.html">fabio</a></td>
-<td width="33%" class="link-index"><a href="fabio.TiffIO-module.html#FIELD_TYPE_OUT">FIELD_TYPE_OUT</a><br />
-<span class="index-where">(in <a href="fabio.TiffIO-module.html">fabio.TiffIO</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.file_series.file_series-class.html#first_image">first_image()</a><br />
-<span class="index-where">(in <a href="fabio.file_series.file_series-class.html">file_series</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.datIO.fabiodata-class.html">fabiodata</a><br />
-<span class="index-where">(in <a href="fabio.datIO-module.html">fabio.datIO</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.file_series-module.html">file_series</a><br />
-<span class="index-where">(in <a href="fabio-module.html">fabio</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.file_series.file_series-class.html#first_object">first_object()</a><br />
-<span class="index-where">(in <a href="fabio.file_series.file_series-class.html">file_series</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.fabioimage-module.html">fabioimage</a><br />
-<span class="index-where">(in <a href="fabio-module.html">fabio</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.file_series.file_series-class.html">file_series</a><br />
-<span class="index-where">(in <a href="fabio.file_series-module.html">fabio.file_series</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fit2dmaskimage-module.html">fit2dmaskimage</a><br />
-<span class="index-where">(in <a href="fabio-module.html">fabio</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioimage-class.html">fabioimage</a><br />
-<span class="index-where">(in <a href="fabio.fabioimage-module.html">fabio.fabioimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fabioutils.filename_object-class.html">filename_object</a><br />
-<span class="index-where">(in <a href="fabio.fabioutils-module.html">fabio.fabioutils</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fit2dmaskimage.fit2dmaskimage-class.html">fit2dmaskimage</a><br />
-<span class="index-where">(in <a href="fabio.fit2dmaskimage-module.html">fabio.fit2dmaskimage</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioStream-class.html">fabioStream</a><br />
-<span class="index-where">(in <a href="fabio.fabioimage-module.html">fabio.fabioimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.file_series.filename_series-class.html">filename_series</a><br />
-<span class="index-where">(in <a href="fabio.file_series-module.html">fabio.file_series</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fit2dspreadsheetimage-module.html">fit2dspreadsheetimage</a><br />
-<span class="index-where">(in <a href="fabio-module.html">fabio</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.fabioutils-module.html">fabioutils</a><br />
-<span class="index-where">(in <a href="fabio-module.html">fabio</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fabioutils-module.html#FILETYPES">FILETYPES</a><br />
-<span class="index-where">(in <a href="fabio.fabioutils-module.html">fabio.fabioutils</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html">fit2dspreadsheetimage</a><br />
-<span class="index-where">(in <a href="fabio.fit2dspreadsheetimage-module.html">fabio.fit2dspreadsheetimage</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.TiffIO-module.html#FIELD_TYPE">FIELD_TYPE</a><br />
-<span class="index-where">(in <a href="fabio.TiffIO-module.html">fabio.TiffIO</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.file_series.file_series-class.html#first">first()</a><br />
-<span class="index-where">(in <a href="fabio.file_series.file_series-class.html">file_series</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.edfimage.Frame-class.html">Frame</a><br />
-<span class="index-where">(in <a href="fabio.edfimage-module.html">fabio.edfimage</a>)</span></td>
-</tr>
-</table>
-</td></tr>
-<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="G">G</a></h2></td>
-<td valign="top">
-<table class="link-index" width="100%" border="1">
-<tr>
-<td width="33%" class="link-index"><a href="fabio.GEimage-module.html#GE_HEADER_INFO">GE_HEADER_INFO</a><br />
-<span class="index-where">(in <a href="fabio.GEimage-module.html">fabio.GEimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getData">getData()</a><br />
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-<td width="33%" class="link-index"><a href="fabio.TiffIO.TiffIO-class.html#getImageFileDirectories">getImageFileDirectories()</a><br />
-<span class="index-where">(in <a href="fabio.TiffIO.TiffIO-class.html">TiffIO</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.GEimage-module.html">GEimage</a><br />
-<span class="index-where">(in <a href="fabio-module.html">fabio</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getDim1">getDim1()</a><br />
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-<span class="index-where">(in <a href="fabio.TiffIO.TiffIO-class.html">TiffIO</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.GEimage.GEimage-class.html">GEimage</a><br />
-<span class="index-where">(in <a href="fabio.GEimage-module.html">fabio.GEimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getDim2">getDim2()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioimage-class.html#getmax">getmax()</a><br />
-<span class="index-where">(in <a href="fabio.fabioimage.fabioimage-class.html">fabioimage</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.GEimage_old.GEimage-class.html">GEimage</a><br />
-<span class="index-where">(in <a href="fabio.GEimage_old-module.html">fabio.GEimage_old</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getDims">getDims()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioimage-class.html#getmean">getmean()</a><br />
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-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.GEimage_old-module.html">GEimage_old</a><br />
-<span class="index-where">(in <a href="fabio-module.html">fabio</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.edfimage.Frame-class.html#getEdfBlock">getEdfBlock()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.Frame-class.html">Frame</a>)</span></td>
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-<span class="index-where">(in <a href="fabio.fabioimage.fabioimage-class.html">fabioimage</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getBpp">getBpp()</a><br />
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-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getByteCode">getByteCode()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getframe">getframe()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
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-<span class="index-where">(in <a href="fabio.fabioutils-module.html">fabio.fabioutils</a>)</span></td>
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-<tr>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getCapsHeader">getCapsHeader()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioimage-class.html#getframe">getframe()</a><br />
-<span class="index-where">(in <a href="fabio.fabioimage.fabioimage-class.html">fabioimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.TiffIO.TiffIO-class.html#getNumberOfImages">getNumberOfImages()</a><br />
-<span class="index-where">(in <a href="fabio.TiffIO.TiffIO-class.html">TiffIO</a>)</span></td>
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-<tr>
-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioimage-class.html#getclassname">getclassname()</a><br />
-<span class="index-where">(in <a href="fabio.fabioimage.fabioimage-class.html">fabioimage</a>)</span></td>
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-<span class="index-where">(in <a href="fabio.OXDimage.Section-class.html">Section</a>)</span></td>
-</tr>
-<tr>
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-<span class="index-where">(in <a href="fabio.fabioimage.fabioimage-class.html">fabioimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioimage-class.html#getstddev">getstddev()</a><br />
-<span class="index-where">(in <a href="fabio.fabioimage.fabioimage-class.html">fabioimage</a>)</span></td>
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-<tr>
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-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#getHeaderKeys">getHeaderKeys()</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
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-<tr>
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-<span class="index-where">(in <a href="fabio.edfimage.Frame-class.html">Frame</a>)</span></td>
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-<span class="index-where">(in <a href="fabio.TiffIO.TiffIO-class.html">TiffIO</a>)</span></td>
-<td width="33%" class="link-index"> </td>
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-</table>
-</td></tr>
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-<table class="link-index" width="100%" border="1">
-<tr>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#header">header</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.marccdimage-module.html#HEADER_NAMES">HEADER_NAMES</a><br />
-<span class="index-where">(in <a href="fabio.marccdimage-module.html">fabio.marccdimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.HiPiCimage.HiPiCimage-class.html">HiPiCimage</a><br />
-<span class="index-where">(in <a href="fabio.HiPiCimage-module.html">fabio.HiPiCimage</a>)</span></td>
-</tr>
-<tr>
-<td width="33%" class="link-index"><a href="fabio.marccdimage-module.html#HEADER_FORMAT">HEADER_FORMAT</a><br />
-<span class="index-where">(in <a href="fabio.marccdimage-module.html">fabio.marccdimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.pnmimage-module.html#HEADERITEMS">HEADERITEMS</a><br />
-<span class="index-where">(in <a href="fabio.pnmimage-module.html">fabio.pnmimage</a>)</span></td>
-<td width="33%" class="link-index"> </td>
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-<tr>
-<td width="33%" class="link-index"><a href="fabio.edfimage.edfimage-class.html#header_keys">header_keys</a><br />
-<span class="index-where">(in <a href="fabio.edfimage.edfimage-class.html">edfimage</a>)</span></td>
-<td width="33%" class="link-index"><a href="fabio.HiPiCimage-module.html">HiPiCimage</a><br />
-<span class="index-where">(in <a href="fabio-module.html">fabio</a>)</span></td>
-<td width="33%" class="link-index"> </td>
-</tr>
-</table>
-</td></tr>
-<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="I">I</a></h2></td>
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-<table class="link-index" width="100%" border="1">
-<tr>
-<td width="33%" class="link-index"><a href="fabio.fabioutils-module.html#i">i</a><br />
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-<td width="33%" class="link-index"><a href="fabio.fabioimage.fabioimage-class.html#integrate_area">integrate_area()</a><br />
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-<tr>
-<td width="33%" class="link-index"><a href="fabio.tifimage.Image_File_Directory-class.html">Image_File_Directory</a><br />
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-<tr>
-<td width="33%" class="link-index"><a href="fabio.tifimage.Image_File_Directory_entry-class.html">Image_File_Directory_entry</a><br />
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-<tr>
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-<center><b>
- [ <a href="module-tree.html">Module Hierarchy</a>
- | <a href="class-tree.html">Class Hierarchy</a> ]
-</b></center><br />
-<h1 class="epydoc">Module Hierarchy</h1>
-<ul class="nomargin-top">
- <li> <strong class="uidlink"><a href="fabio-module.html">fabio</a></strong>
- <ul>
- <li> <strong class="uidlink"><a href="fabio.GEimage-module.html">fabio.GEimage</a></strong> </li>
- <li> <strong class="uidlink"><a href="fabio.GEimage_old-module.html">fabio.GEimage_old</a></strong>: <em class="summary">Reads the header from a GE a-Si Angio Detector</em> </li>
- <li> <strong class="uidlink"><a href="fabio.HiPiCimage-module.html">fabio.HiPiCimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.OXDimage-module.html">fabio.OXDimage</a></strong>: <em class="summary">Reads Oxford Diffraction Sapphire 3 images</em> </li>
- <li> <strong class="uidlink"><a href="fabio.TiffIO-module.html">fabio.TiffIO</a></strong> </li>
- <li> <strong class="uidlink"><a href="fabio.adscimage-module.html">fabio.adscimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.binaryimage-module.html">fabio.binaryimage</a></strong>: <em class="summary">Authors: Gael Goret, Jerome Kieffer, ESRF, France Emails:
- gael.goret at esrf.fr, jerome.kieffer at esrf.fr</em> </li>
- <li> <strong class="uidlink"><a href="fabio.bruker100image-module.html">fabio.bruker100image</a></strong> </li>
- <li> <strong class="uidlink"><a href="fabio.brukerimage-module.html">fabio.brukerimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.byte_offset-module.html">fabio.byte_offset</a></strong>: <em class="summary">Authors: Jerome Kieffer, ESRF Email:
- jerome.kieffer at esrf.eu</em> </li>
- <li> <strong class="uidlink"><a href="fabio.cbfimage-module.html">fabio.cbfimage</a></strong>: <em class="summary">Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr</em> </li>
- <li> <strong class="uidlink"><a href="fabio.cf_io-module.html">fabio.cf_io</a></strong> </li>
- <li> <strong class="uidlink"><a href="fabio.compression-module.html">fabio.compression</a></strong>: <em class="summary">Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr</em> </li>
- <li> <strong class="uidlink"><a href="fabio.converters-module.html">fabio.converters</a></strong>: <em class="summary">Converter module.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.datIO-module.html">fabio.datIO</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.dm3image-module.html">fabio.dm3image</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.edfimage-module.html">fabio.edfimage</a></strong>: <em class="summary">License: GPLv2+</em> </li>
- <li> <strong class="uidlink"><a href="fabio.fabioimage-module.html">fabio.fabioimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.fabioutils-module.html">fabio.fabioutils</a></strong>: <em class="summary">General purpose utilities functions for fabio</em> </li>
- <li> <strong class="uidlink"><a href="fabio.file_series-module.html">fabio.file_series</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.fit2dmaskimage-module.html">fabio.fit2dmaskimage</a></strong>: <em class="summary">Author: Andy Hammersley, ESRF Translation into python/fabio: Jon
- Wright, ESRF</em> </li>
- <li> <strong class="uidlink"><a href="fabio.fit2dspreadsheetimage-module.html">fabio.fit2dspreadsheetimage</a></strong>: <em class="summary">Read the fit2d ascii image output...</em> </li>
- <li> <strong class="uidlink"><a href="fabio.kcdimage-module.html">fabio.kcdimage</a></strong>: <em class="summary">Authors: Jerome Kieffer, ESRF
- email:jerome.kieffer at esrf.fr</em> </li>
- <li> <strong class="uidlink"><a href="fabio.mar345_IO-module.html">fabio.mar345_IO</a></strong>: <em class="summary">New Cython version of mar345_io for preparing the migration to Python3</em> </li>
- <li> <strong class="uidlink"><a href="fabio.mar345image-module.html">fabio.mar345image</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.marccdimage-module.html">fabio.marccdimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.openimage-module.html">fabio.openimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.pilatusimage-module.html">fabio.pilatusimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.pnmimage-module.html">fabio.pnmimage</a></strong>: <em class="summary">Authors: Henning O.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.readbytestream-module.html">fabio.readbytestream</a></strong>: <em class="summary">Reads a bytestream</em> </li>
- <li> <strong class="uidlink"><a href="fabio.tifimage-module.html">fabio.tifimage</a></strong>: <em class="summary">FabIO class for dealing with TIFF images.</em> </li>
- <li> <strong class="uidlink"><a href="fabio.xsdimage-module.html">fabio.xsdimage</a></strong>: <em class="summary">Authors: Jérôme Kieffer, ESRF
- email:jerome.kieffer at esrf.fr</em> </li>
- </ul>
- </li>
-</ul>
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diff --git a/doc/html/redirect.html b/doc/html/redirect.html
deleted file mode 100644
index 08550f3..0000000
--- a/doc/html/redirect.html
+++ /dev/null
@@ -1,38 +0,0 @@
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-<meta http-equiv="cache-control" content="no-cache" />
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diff --git a/doc/html/str-class.html b/doc/html/str-class.html
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-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
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- <title>str</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
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- <td width="100%">
- <span class="breadcrumbs">
- str ::
- Class str
- </span>
- </td>
- <td>
- <table cellpadding="0" cellspacing="0">
- <!-- hide/show private -->
- <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
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- >] | <a href="str-class.html"
- target="_top">no frames</a>]</span></td></tr>
- </table>
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- </tr>
-</table>
-<!-- ==================== CLASS DESCRIPTION ==================== -->
-<h1 class="epydoc">Class str</h1><p class="nomargin-top"></p>
-<pre class="base-tree">
-object --+
- |
-basestring --+
- |
- <strong class="uidshort">str</strong>
-</pre>
-
-<hr />
-<p>str(object) -> string</p>
- <p>Return a nice string representation of the object. If the argument is
- a string, the return value is the same object.</p>
-
-<!-- ==================== INSTANCE METHODS ==================== -->
-<a name="section-InstanceMethods"></a>
-<table class="summary" border="1" cellpadding="3"
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-<tr bgcolor="#70b0f0" class="table-header">
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- <td align="right" valign="top"
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- >hide private</a>]</span></td>
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- x+y</td>
- <td align="right" valign="top">
-
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- </td>
- </tr>
- </table>
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- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
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- <td><span class="summary-sig"><a name="__contains__"></a><span class="summary-sig-name">__contains__</span>(<span class="summary-sig-arg">x</span>,
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- <td align="right" valign="top">
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-
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- <td align="right" valign="top">
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-
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- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="__ne__"></a><span class="summary-sig-name">__ne__</span>(<span class="summary-sig-arg">x</span>,
- <span class="summary-sig-arg">y</span>)</span><br />
- x!=y</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">a new object with type S, a subtype of T</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#__new__" class="summary-sig-name">__new__</a>(<span class="summary-sig-arg">T</span>,
- <span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">...</span>)</span></td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#__repr__" class="summary-sig-name">__repr__</a>(<span class="summary-sig-arg">x</span>)</span><br />
- repr(x)</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="__rmod__"></a><span class="summary-sig-name">__rmod__</span>(<span class="summary-sig-arg">x</span>,
- <span class="summary-sig-arg">y</span>)</span><br />
- y%x</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="__rmul__"></a><span class="summary-sig-name">__rmul__</span>(<span class="summary-sig-arg">x</span>,
- <span class="summary-sig-arg">n</span>)</span><br />
- n*x</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">size of S in memory, in bytes</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#__sizeof__" class="summary-sig-name">__sizeof__</a>(<span class="summary-sig-arg">S</span>)</span></td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#__str__" class="summary-sig-name">__str__</a>(<span class="summary-sig-arg">x</span>)</span><br />
- str(x)</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_formatter_field_name_split"></a><span class="summary-sig-name">_formatter_field_name_split</span>(<span class="summary-sig-arg">...</span>)</span></td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr class="private">
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type"> </span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="_formatter_parser"></a><span class="summary-sig-name">_formatter_parser</span>(<span class="summary-sig-arg">...</span>)</span></td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="capitalize"></a><span class="summary-sig-name">capitalize</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return a copy of the string S with only its first character
- capitalized.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#center" class="summary-sig-name">center</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">width</span>,
- <span class="summary-sig-arg">fillchar</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return S centered in a string of length width.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">int</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#count" class="summary-sig-name">count</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sub</span>,
- <span class="summary-sig-arg">start</span>=<span class="summary-sig-default">...</span>,
- <span class="summary-sig-arg">end</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return the number of non-overlapping occurrences of substring sub in
- string S[start:end].</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">object</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#decode" class="summary-sig-name">decode</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">encoding</span>=<span class="summary-sig-default">...</span>,
- <span class="summary-sig-arg">errors</span>=<span class="summary-sig-default">...</span>)</span><br />
- Decodes S using the codec registered for encoding.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">object</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#encode" class="summary-sig-name">encode</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">encoding</span>=<span class="summary-sig-default">...</span>,
- <span class="summary-sig-arg">errors</span>=<span class="summary-sig-default">...</span>)</span><br />
- Encodes S using the codec registered for encoding.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#endswith" class="summary-sig-name">endswith</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">suffix</span>,
- <span class="summary-sig-arg">start</span>=<span class="summary-sig-default">...</span>,
- <span class="summary-sig-arg">end</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return True if S ends with the specified suffix, False otherwise.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#expandtabs" class="summary-sig-name">expandtabs</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">tabsize</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a copy of S where all tab characters are expanded using
- spaces.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">int</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#find" class="summary-sig-name">find</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sub</span>,
- <span class="summary-sig-arg">start</span>=<span class="summary-sig-default">... </span>,
- <span class="summary-sig-arg">end</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return the lowest index in S where substring sub is found, such that
- sub is contained within s[start:end].</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="format"></a><span class="summary-sig-name">format</span>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">*args</span>,
- <span class="summary-sig-arg">**kwargs</span>)</span></td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">int</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="index"></a><span class="summary-sig-name">index</span>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sub</span>,
- <span class="summary-sig-arg">start</span>=<span class="summary-sig-default">... </span>,
- <span class="summary-sig-arg">end</span>=<span class="summary-sig-default">...</span>)</span><br />
- Like S.find() but raise ValueError when the substring is not found.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="isalnum"></a><span class="summary-sig-name">isalnum</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return True if all characters in S are alphanumeric and there is at
- least one character in S, False otherwise.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="isalpha"></a><span class="summary-sig-name">isalpha</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return True if all characters in S are alphabetic and there is at
- least one character in S, False otherwise.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="isdigit"></a><span class="summary-sig-name">isdigit</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return True if all characters in S are digits and there is at least
- one character in S, False otherwise.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="islower"></a><span class="summary-sig-name">islower</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return True if all cased characters in S are lowercase and there is
- at least one cased character in S, False otherwise.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="isspace"></a><span class="summary-sig-name">isspace</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return True if all characters in S are whitespace and there is at
- least one character in S, False otherwise.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#istitle" class="summary-sig-name">istitle</a>(<span class="summary-sig-arg">S</span>)</span><br />
- Return True if S is a titlecased string and there is at least one
- character in S, i.e.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="isupper"></a><span class="summary-sig-name">isupper</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return True if all cased characters in S are uppercase and there is
- at least one cased character in S, False otherwise.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#join" class="summary-sig-name">join</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">iterable</span>)</span><br />
- Return a string which is the concatenation of the strings in the
- iterable.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#ljust" class="summary-sig-name">ljust</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">width</span>,
- <span class="summary-sig-arg">fillchar</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return S left-justified in a string of length width.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="lower"></a><span class="summary-sig-name">lower</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return a copy of the string S converted to lowercase.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string or unicode</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#lstrip" class="summary-sig-name">lstrip</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">chars</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a copy of the string S with leading whitespace removed.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">(head, sep, tail)</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#partition" class="summary-sig-name">partition</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sep</span>)</span><br />
- Search for the separator sep in S, and return the part before it, the
- separator itself, and the part after it.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#replace" class="summary-sig-name">replace</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">old</span>,
- <span class="summary-sig-arg">new</span>,
- <span class="summary-sig-arg">count</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a copy of string S with all occurrences of substring old
- replaced by new.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">int</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#rfind" class="summary-sig-name">rfind</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sub</span>,
- <span class="summary-sig-arg">start</span>=<span class="summary-sig-default">... </span>,
- <span class="summary-sig-arg">end</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return the highest index in S where substring sub is found, such that
- sub is contained within s[start:end].</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">int</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="rindex"></a><span class="summary-sig-name">rindex</span>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sub</span>,
- <span class="summary-sig-arg">start</span>=<span class="summary-sig-default">... </span>,
- <span class="summary-sig-arg">end</span>=<span class="summary-sig-default">...</span>)</span><br />
- Like S.rfind() but raise ValueError when the substring is not found.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#rjust" class="summary-sig-name">rjust</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">width</span>,
- <span class="summary-sig-arg">fillchar</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return S right-justified in a string of length width.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">(head, sep, tail)</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#rpartition" class="summary-sig-name">rpartition</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sep</span>)</span><br />
- Search for the separator sep in S, starting at the end of S, and
- return the part before it, the separator itself, and the part after
- it.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">list of strings</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#rsplit" class="summary-sig-name">rsplit</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sep</span>=<span class="summary-sig-default">... </span>,
- <span class="summary-sig-arg">maxsplit</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a list of the words in the string S, using sep as the
- delimiter string, starting at the end of the string and working to
- the front.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string or unicode</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#rstrip" class="summary-sig-name">rstrip</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">chars</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a copy of the string S with trailing whitespace removed.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">list of strings</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#split" class="summary-sig-name">split</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">sep</span>=<span class="summary-sig-default">... </span>,
- <span class="summary-sig-arg">maxsplit</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a list of the words in the string S, using sep as the
- delimiter string.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">list of strings</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#splitlines" class="summary-sig-name">splitlines</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">keepends</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a list of the lines in S, breaking at line boundaries.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">bool</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#startswith" class="summary-sig-name">startswith</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">prefix</span>,
- <span class="summary-sig-arg">start</span>=<span class="summary-sig-default">...</span>,
- <span class="summary-sig-arg">end</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return True if S starts with the specified prefix, False otherwise.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string or unicode</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#strip" class="summary-sig-name">strip</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">chars</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a copy of the string S with leading and trailing whitespace
- removed.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="swapcase"></a><span class="summary-sig-name">swapcase</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return a copy of the string S with uppercase characters converted to
- lowercase and vice versa.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#title" class="summary-sig-name">title</a>(<span class="summary-sig-arg">S</span>)</span><br />
- Return a titlecased version of S, i.e.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="translate"></a><span class="summary-sig-name">translate</span>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">table</span>,
- <span class="summary-sig-arg">deletechars</span>=<span class="summary-sig-default">...</span>)</span><br />
- Return a copy of the string S, where all characters occurring in the
- optional argument deletechars are removed, and the remaining
- characters have been mapped through the given translation table,
- which must be a string of length 256.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a name="upper"></a><span class="summary-sig-name">upper</span>(<span class="summary-sig-arg">S</span>)</span><br />
- Return a copy of the string S converted to uppercase.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
-<tr>
- <td width="15%" align="right" valign="top" class="summary">
- <span class="summary-type">string</span>
- </td><td class="summary">
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr>
- <td><span class="summary-sig"><a href="str-class.html#zfill" class="summary-sig-name">zfill</a>(<span class="summary-sig-arg">S</span>,
- <span class="summary-sig-arg">width</span>)</span><br />
- Pad a numeric string S with zeros on the left, to fill a field of the
- specified width.</td>
- <td align="right" valign="top">
-
-
- </td>
- </tr>
- </table>
-
- </td>
- </tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__delattr__</code>,
- <code>__init__</code>,
- <code>__reduce__</code>,
- <code>__reduce_ex__</code>,
- <code>__setattr__</code>,
- <code>__subclasshook__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== PROPERTIES ==================== -->
-<a name="section-Properties"></a>
-<table class="summary" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Properties</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-Properties"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
- <tr>
- <td colspan="2" class="summary">
- <p class="indent-wrapped-lines"><b>Inherited from <code>object</code></b>:
- <code>__class__</code>
- </p>
- </td>
- </tr>
-</table>
-<!-- ==================== METHOD DETAILS ==================== -->
-<a name="section-MethodDetails"></a>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr bgcolor="#70b0f0" class="table-header">
- <td colspan="2" class="table-header">
- <table border="0" cellpadding="0" cellspacing="0" width="100%">
- <tr valign="top">
- <td align="left"><span class="table-header">Method Details</span></td>
- <td align="right" valign="top"
- ><span class="options">[<a href="#section-MethodDetails"
- class="privatelink" onclick="toggle_private();"
- >hide private</a>]</span></td>
- </tr>
- </table>
- </td>
-</tr>
-</table>
-<a name="__format__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__format__</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">format_spec</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>default object formatter</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- <dt>Overrides:
- object.__format__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="__getattribute__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__getattribute__</span>(<span class="sig-arg">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>x.__getattribute__('name') <==> x.name</p>
- <dl class="fields">
- <dt>Overrides:
- object.__getattribute__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="__getslice__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__getslice__</span>(<span class="sig-arg">x</span>,
- <span class="sig-arg">i</span>,
- <span class="sig-arg">j</span>)</span>
- <br /><em class="fname">(Slicling operator)</em>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>x[i:j]</p>
- <p>Use of negative indices is not supported.</p>
- <dl class="fields">
- </dl>
-</td></tr></table>
-</div>
-<a name="__hash__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__hash__</span>(<span class="sig-arg">x</span>)</span>
- <br /><em class="fname">(Hashing function)</em>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>hash(x)</p>
- <dl class="fields">
- <dt>Overrides:
- object.__hash__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="__new__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__new__</span>(<span class="sig-arg">T</span>,
- <span class="sig-arg">S</span>,
- <span class="sig-arg">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
-
- <dl class="fields">
- <dt>Returns: a new object with type S, a subtype of T</dt>
- <dt>Overrides:
- object.__new__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="__repr__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__repr__</span>(<span class="sig-arg">x</span>)</span>
- <br /><em class="fname">(Representation operator)</em>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>repr(x)</p>
- <dl class="fields">
- <dt>Overrides:
- object.__repr__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="__sizeof__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__sizeof__</span>(<span class="sig-arg">S</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
-
- <dl class="fields">
- <dt>Returns: size of S in memory, in bytes</dt>
- <dt>Overrides:
- object.__sizeof__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="__str__"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">__str__</span>(<span class="sig-arg">x</span>)</span>
- <br /><em class="fname">(Informal representation operator)</em>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>str(x)</p>
- <dl class="fields">
- <dt>Overrides:
- object.__str__
- </dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="center"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">center</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">width</span>,
- <span class="sig-arg">fillchar</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return S centered in a string of length width. Padding is done using
- the specified fill character (default is a space)</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="count"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">count</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">sub</span>,
- <span class="sig-arg">start</span>=<span class="sig-default">...</span>,
- <span class="sig-arg">end</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return the number of non-overlapping occurrences of substring sub in
- string S[start:end]. Optional arguments start and end are interpreted as
- in slice notation.</p>
- <dl class="fields">
- <dt>Returns: int</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="decode"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">decode</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">encoding</span>=<span class="sig-default">...</span>,
- <span class="sig-arg">errors</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Decodes S using the codec registered for encoding. encoding defaults
- to the default encoding. errors may be given to set a different error
- handling scheme. Default is 'strict' meaning that encoding errors raise a
- UnicodeDecodeError. Other possible values are 'ignore' and 'replace' as
- well as any other name registered with codecs.register_error that is able
- to handle UnicodeDecodeErrors.</p>
- <dl class="fields">
- <dt>Returns: object</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="encode"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">encode</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">encoding</span>=<span class="sig-default">...</span>,
- <span class="sig-arg">errors</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Encodes S using the codec registered for encoding. encoding defaults
- to the default encoding. errors may be given to set a different error
- handling scheme. Default is 'strict' meaning that encoding errors raise a
- UnicodeEncodeError. Other possible values are 'ignore', 'replace' and
- 'xmlcharrefreplace' as well as any other name registered with
- codecs.register_error that is able to handle UnicodeEncodeErrors.</p>
- <dl class="fields">
- <dt>Returns: object</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="endswith"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">endswith</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">suffix</span>,
- <span class="sig-arg">start</span>=<span class="sig-default">...</span>,
- <span class="sig-arg">end</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return True if S ends with the specified suffix, False otherwise. With
- optional start, test S beginning at that position. With optional end,
- stop comparing S at that position. suffix can also be a tuple of strings
- to try.</p>
- <dl class="fields">
- <dt>Returns: bool</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="expandtabs"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">expandtabs</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">tabsize</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a copy of S where all tab characters are expanded using spaces.
- If tabsize is not given, a tab size of 8 characters is assumed.</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="find"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">find</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">sub</span>,
- <span class="sig-arg">start</span>=<span class="sig-default">... </span>,
- <span class="sig-arg">end</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return the lowest index in S where substring sub is found, such that
- sub is contained within s[start:end]. Optional arguments start and end
- are interpreted as in slice notation.</p>
- <p>Return -1 on failure.</p>
- <dl class="fields">
- <dt>Returns: int</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="istitle"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">istitle</span>(<span class="sig-arg">S</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return True if S is a titlecased string and there is at least one
- character in S, i.e. uppercase characters may only follow uncased
- characters and lowercase characters only cased ones. Return False
- otherwise.</p>
- <dl class="fields">
- <dt>Returns: bool</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="join"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">join</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">iterable</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a string which is the concatenation of the strings in the
- iterable. The separator between elements is S.</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="ljust"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">ljust</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">width</span>,
- <span class="sig-arg">fillchar</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return S left-justified in a string of length width. Padding is done
- using the specified fill character (default is a space).</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="lstrip"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">lstrip</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">chars</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a copy of the string S with leading whitespace removed. If
- chars is given and not None, remove characters in chars instead. If chars
- is unicode, S will be converted to unicode before stripping</p>
- <dl class="fields">
- <dt>Returns: string or unicode</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="partition"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">partition</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">sep</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Search for the separator sep in S, and return the part before it, the
- separator itself, and the part after it. If the separator is not found,
- return S and two empty strings.</p>
- <dl class="fields">
- <dt>Returns: (head, sep, tail)</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="replace"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">replace</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">old</span>,
- <span class="sig-arg">new</span>,
- <span class="sig-arg">count</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a copy of string S with all occurrences of substring old
- replaced by new. If the optional argument count is given, only the first
- count occurrences are replaced.</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="rfind"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">rfind</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">sub</span>,
- <span class="sig-arg">start</span>=<span class="sig-default">... </span>,
- <span class="sig-arg">end</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return the highest index in S where substring sub is found, such that
- sub is contained within s[start:end]. Optional arguments start and end
- are interpreted as in slice notation.</p>
- <p>Return -1 on failure.</p>
- <dl class="fields">
- <dt>Returns: int</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="rjust"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">rjust</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">width</span>,
- <span class="sig-arg">fillchar</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return S right-justified in a string of length width. Padding is done
- using the specified fill character (default is a space)</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="rpartition"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">rpartition</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">sep</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Search for the separator sep in S, starting at the end of S, and
- return the part before it, the separator itself, and the part after it.
- If the separator is not found, return two empty strings and S.</p>
- <dl class="fields">
- <dt>Returns: (head, sep, tail)</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="rsplit"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">rsplit</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">sep</span>=<span class="sig-default">... </span>,
- <span class="sig-arg">maxsplit</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a list of the words in the string S, using sep as the delimiter
- string, starting at the end of the string and working to the front. If
- maxsplit is given, at most maxsplit splits are done. If sep is not
- specified or is None, any whitespace string is a separator.</p>
- <dl class="fields">
- <dt>Returns: list of strings</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="rstrip"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">rstrip</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">chars</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a copy of the string S with trailing whitespace removed. If
- chars is given and not None, remove characters in chars instead. If chars
- is unicode, S will be converted to unicode before stripping</p>
- <dl class="fields">
- <dt>Returns: string or unicode</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="split"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">split</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">sep</span>=<span class="sig-default">... </span>,
- <span class="sig-arg">maxsplit</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a list of the words in the string S, using sep as the delimiter
- string. If maxsplit is given, at most maxsplit splits are done. If sep
- is not specified or is None, any whitespace string is a separator and
- empty strings are removed from the result.</p>
- <dl class="fields">
- <dt>Returns: list of strings</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="splitlines"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">splitlines</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">keepends</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a list of the lines in S, breaking at line boundaries. Line
- breaks are not included in the resulting list unless keepends is given
- and true.</p>
- <dl class="fields">
- <dt>Returns: list of strings</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="startswith"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">startswith</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">prefix</span>,
- <span class="sig-arg">start</span>=<span class="sig-default">...</span>,
- <span class="sig-arg">end</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return True if S starts with the specified prefix, False otherwise.
- With optional start, test S beginning at that position. With optional
- end, stop comparing S at that position. prefix can also be a tuple of
- strings to try.</p>
- <dl class="fields">
- <dt>Returns: bool</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="strip"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">strip</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">chars</span>=<span class="sig-default">...</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a copy of the string S with leading and trailing whitespace
- removed. If chars is given and not None, remove characters in chars
- instead. If chars is unicode, S will be converted to unicode before
- stripping</p>
- <dl class="fields">
- <dt>Returns: string or unicode</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="title"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">title</span>(<span class="sig-arg">S</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Return a titlecased version of S, i.e. words start with uppercase
- characters, all remaining cased characters have lowercase.</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<a name="zfill"></a>
-<div>
-<table class="details" border="1" cellpadding="3"
- cellspacing="0" width="100%" bgcolor="white">
-<tr><td>
- <table width="100%" cellpadding="0" cellspacing="0" border="0">
- <tr valign="top"><td>
- <h3 class="epydoc"><span class="sig"><span class="sig-name">zfill</span>(<span class="sig-arg">S</span>,
- <span class="sig-arg">width</span>)</span>
- </h3>
- </td><td align="right" valign="top"
- >
- </td>
- </tr></table>
-
- <p>Pad a numeric string S with zeros on the left, to fill a field of the
- specified width. The string S is never truncated.</p>
- <dl class="fields">
- <dt>Returns: string</dt>
- </dl>
-</td></tr></table>
-</div>
-<br />
-<!-- ==================== NAVIGATION BAR ==================== -->
-<table class="navbar" border="0" width="100%" cellpadding="0"
- bgcolor="#a0c0ff" cellspacing="0">
- <tr valign="middle">
- <!-- Home link -->
- <th> <a
- href="fabio-module.html">Home</a> </th>
-
- <!-- Tree link -->
- <th> <a
- href="module-tree.html">Trees</a> </th>
-
- <!-- Index link -->
- <th> <a
- href="identifier-index.html">Indices</a> </th>
-
- <!-- Help link -->
- <th> <a
- href="help.html">Help</a> </th>
-
- <th class="navbar" width="100%"></th>
- </tr>
-</table>
-<table border="0" cellpadding="0" cellspacing="0" width="100%%">
- <tr>
- <td align="left" class="footer">
- Generated by Epydoc 3.0.1 on Tue Apr 24 09:22:27 2012
- </td>
- <td align="right" class="footer">
- <a target="mainFrame" href="http://epydoc.sourceforge.net"
- >http://epydoc.sourceforge.net</a>
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-</table>
-
-<script type="text/javascript">
- <!--
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- // visible); but by default, we want to hide them. So hide
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- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-everything.html b/doc/html/toc-everything.html
deleted file mode 100644
index 633eb3c..0000000
--- a/doc/html/toc-everything.html
+++ /dev/null
@@ -1,242 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>Everything</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Everything</h1>
-<hr />
- <h2 class="toc">All Classes</h2>
- <a target="mainFrame" href="fabio.GEimage.GEimage-class.html"
- >fabio.GEimage.GEimage</a><br /> <a target="mainFrame" href="fabio.GEimage_old.GEimage-class.html"
- >fabio.GEimage_old.GEimage</a><br /> <a target="mainFrame" href="fabio.HiPiCimage.HiPiCimage-class.html"
- >fabio.HiPiCimage.HiPiCimage</a><br /> <a target="mainFrame" href="fabio.OXDimage.OXDimage-class.html"
- >fabio.OXDimage.OXDimage</a><br /> <a target="mainFrame" href="fabio.OXDimage.Section-class.html"
- >fabio.OXDimage.Section</a><br /> <a target="mainFrame" href="fabio.TiffIO.TiffIO-class.html"
- >fabio.TiffIO.TiffIO</a><br /> <a target="mainFrame" href="fabio.adscimage.adscimage-class.html"
- >fabio.adscimage.adscimage</a><br /> <a target="mainFrame" href="fabio.binaryimage.binaryimage-class.html"
- >fabio.binaryimage.binaryimage</a><br /> <a target="mainFrame" href="fabio.bruker100image.bruker100image-class.html"
- >fabio.bruker100image.bruker100image</a><br /> <a target="mainFrame" href="fabio.brukerimage.brukerimage-class.html"
- >fabio.brukerimage.brukerimage</a><br /> <a target="mainFrame" href="fabio.cbfimage.CIF-class.html"
- >fabio.cbfimage.CIF</a><br /> <a target="mainFrame" href="fabio.cbfimage.cbfimage-class.html"
- >fabio.cbfimage.cbfimage</a><br /> <a target="mainFrame" href="fabio.datIO.columnfile-class.html"
- >fabio.datIO.columnfile</a><br /> <a target="mainFrame" href="fabio.datIO.fabiodata-class.html"
- >fabio.datIO.fabiodata</a><br /> <a target="mainFrame" href="fabio.dm3image.dm3image-class.html"
- >fabio.dm3image.dm3image</a><br /> <a target="mainFrame" href="fabio.edfimage.Frame-class.html"
- >fabio.edfimage.Frame</a><br /> <a target="mainFrame" href="fabio.edfimage.edfimage-class.html"
- >fabio.edfimage.edfimage</a><br /> <a target="mainFrame" href="fabio.fabioimage.fabioStream-class.html"
- >fabio.fabioimage.fabioStream</a><br /> <a target="mainFrame" href="fabio.fabioimage.fabioimage-class.html"
- >fabio.fabioimage.fabioimage</a><br /> <a target="mainFrame" href="fabio.fabioutils.filename_object-class.html"
- >fabio.fabioutils.filename_object</a><br /> <a target="mainFrame" href="fabio.file_series.file_series-class.html"
- >fabio.file_series.file_series</a><br /> <a target="mainFrame" href="fabio.file_series.filename_series-class.html"
- >fabio.file_series.filename_series</a><br /> <a target="mainFrame" href="fabio.file_series.numbered_file_series-class.html"
- >fabio.file_series.numbered_file_series</a><br /> <a target="mainFrame" href="fabio.fit2dmaskimage.fit2dmaskimage-class.html"
- >fabio.fit2dmaskimage.fit2dmaskimage</a><br /> <a target="mainFrame" href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html"
- >fabio.fit2dspreadsheetimage.fit2dspreadsheetimage</a><br /> <a target="mainFrame" href="fabio.kcdimage.kcdimage-class.html"
- >fabio.kcdimage.kcdimage</a><br /> <a target="mainFrame" href="fabio.mar345image.mar345image-class.html"
- >fabio.mar345image.mar345image</a><br /> <a target="mainFrame" href="fabio.marccdimage.marccdimage-class.html"
- >fabio.marccdimage.marccdimage</a><br /> <a target="mainFrame" href="fabio.pilatusimage.pilatusimage-class.html"
- >fabio.pilatusimage.pilatusimage</a><br /> <a target="mainFrame" href="fabio.pnmimage.pnmimage-class.html"
- >fabio.pnmimage.pnmimage</a><br /> <a target="mainFrame" href="fabio.tifimage.Image_File_Directory-class.html"
- >fabio.tifimage.Image_File_Directory</a><br /> <a target="mainFrame" href="fabio.tifimage.Image_File_Directory_entry-class.html"
- >fabio.tifimage.Image_File_Directory_entry</a><br /> <a target="mainFrame" href="fabio.tifimage.Tiff_header-class.html"
- >fabio.tifimage.Tiff_header</a><br /> <a target="mainFrame" href="fabio.tifimage.tifimage-class.html"
- >fabio.tifimage.tifimage</a><br /> <a target="mainFrame" href="fabio.xsdimage.xsdimage-class.html"
- >fabio.xsdimage.xsdimage</a><br /> <a target="mainFrame" href="str-class.html"
- >str</a><br /> <h2 class="toc">All Functions</h2>
- <a target="mainFrame" href="fabio.GEimage-module.html#demo"
- >fabio.GEimage.demo</a><br /> <a target="mainFrame" href="fabio.adscimage-module.html#test"
- >fabio.adscimage.test</a><br /> <a target="mainFrame" href="fabio.brukerimage-module.html#test"
- >fabio.brukerimage.test</a><br /> <a target="mainFrame" href="fabio.cf_io-module.html#read"
- >fabio.cf_io.read</a><br /> <a target="mainFrame" href="fabio.compression-module.html#compByteOffet_numpy"
- >fabio.compression.compByteOffet_numpy</a><br /> <a target="mainFrame" href="fabio.compression-module.html#compPCK"
- >fabio.compression.compPCK</a><br /> <a target="mainFrame" href="fabio.compression-module.html#compTY1"
- >fabio.compression.compTY1</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decByteOffet_cython"
- >fabio.compression.decByteOffet_cython</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decByteOffet_numpy"
- >fabio.compression.decByteOffet_numpy</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decByteOffet_python"
- >fabio.compression.decByteOffet_python</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decByteOffet_weave"
- >fabio.compression.decByteOffet_weave</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decBzip2"
- >fabio.compression.decBzip2</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decGzip"
- >fabio.compression.decGzip</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decPCK"
- >fabio.compression.decPCK</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decTY1"
- >fabio.compression.decTY1</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decZlib"
- >fabio.compression.decZlib</a><br /> <a target="mainFrame" href="fabio.compression-module.html#endianness"
- >fabio.compression.endianness</a><br /> <a target="mainFrame" href="fabio.compression-module.html#md5sum"
- >fabio.compression.md5sum</a><br /> <a target="mainFrame" href="fabio.converters-module.html#convert_data"
- >fabio.converters.convert_data</a><br /> <a target="mainFrame" href="fabio.converters-module.html#convert_data_integer"
- >fabio.converters.convert_data_integer</a><br /> <a target="mainFrame" href="fabio.converters-module.html#convert_header"
- >fabio.converters.convert_header</a><br /> <a target="mainFrame" href="fabio.fabioimage-module.html#test"
- >fabio.fabioimage.test</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#construct_filename"
- >fabio.fabioutils.construct_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#deconstruct_filename"
- >fabio.fabioutils.deconstruct_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#extract_filenumber"
- >fabio.fabioutils.extract_filenumber</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#getnum"
- >fabio.fabioutils.getnum</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#isAscii"
- >fabio.fabioutils.isAscii</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#jump_filename"
- >fabio.fabioutils.jump_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#next_filename"
- >fabio.fabioutils.next_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#numstem"
- >fabio.fabioutils.numstem</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#previous_filename"
- >fabio.fabioutils.previous_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#toAscii"
- >fabio.fabioutils.toAscii</a><br /> <a target="mainFrame" href="fabio.file_series-module.html#new_file_series"
- >fabio.file_series.new_file_series</a><br /> <a target="mainFrame" href="fabio.file_series-module.html#new_file_series0"
- >fabio.file_series.new_file_series0</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#interpret_header"
- >fabio.marccdimage.interpret_header</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#make_format"
- >fabio.marccdimage.make_format</a><br /> <div class="private">
- <a target="mainFrame" href="fabio.openimage-module.html#_openimage"
- >fabio.openimage._openimage</a><br /> </div>
- <a target="mainFrame" href="fabio.openimage-module.html#do_magic"
- >fabio.openimage.do_magic</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#openheader"
- >fabio.openimage.openheader</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#openimage"
- >fabio.openimage.openimage</a><br /> <a target="mainFrame" href="fabio.readbytestream-module.html#readbytestream"
- >fabio.readbytestream.readbytestream</a><br /> <h2 class="toc">All Variables</h2>
- <a target="mainFrame" href="fabio.GEimage-module.html#GE_HEADER_INFO"
- >fabio.GEimage.GE_HEADER_INFO</a><br /> <a target="mainFrame" href="fabio.GEimage-module.html#__package__"
- >fabio.GEimage.__package__</a><br /> <a target="mainFrame" href="fabio.GEimage-module.html#logger"
- >fabio.GEimage.logger</a><br /> <a target="mainFrame" href="fabio.GEimage_old-module.html#__package__"
- >fabio.GEimage_old.__package__</a><br /> <a target="mainFrame" href="fabio.HiPiCimage-module.html#__package__"
- >fabio.HiPiCimage.__package__</a><br /> <a target="mainFrame" href="fabio.HiPiCimage-module.html#logger"
- >fabio.HiPiCimage.logger</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#DEFAULT_HEADERS"
- >fabio.OXDimage.DEFAULT_HEADERS</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#DETECTOR_TYPES"
- >fabio.OXDimage.DETECTOR_TYPES</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#__doc__"
- >fabio.OXDimage.__doc__</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#__package__"
- >fabio.OXDimage.__package__</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#deg2rad"
- >fabio.OXDimage.deg2rad</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#logger"
- >fabio.OXDimage.logger</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#rad2deg"
- >fabio.OXDimage.rad2deg</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#ALLOW_MULTIPLE_STRIPS"
- >fabio.TiffIO.ALLOW_MULTIPLE_STRIPS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#DEBUG"
- >fabio.TiffIO.DEBUG</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#FIELD_TYPE"
- >fabio.TiffIO.FIELD_TYPE</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#FIELD_TYPE_OUT"
- >fabio.TiffIO.FIELD_TYPE_OUT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_COMPLEXIEEEFP"
- >fabio.TiffIO.SAMPLE_FORMAT_COMPLEXIEEEFP</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_COMPLEXINT"
- >fabio.TiffIO.SAMPLE_FORMAT_COMPLEXINT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_FLOAT"
- >fabio.TiffIO.SAMPLE_FORMAT_FLOAT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_INT"
- >fabio.TiffIO.SAMPLE_FORMAT_INT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_UINT"
- >fabio.TiffIO.SAMPLE_FORMAT_UINT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_VOID"
- >fabio.TiffIO.SAMPLE_FORMAT_VOID</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_BITS_PER_SAMPLE"
- >fabio.TiffIO.TAG_BITS_PER_SAMPLE</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_COLORMAP"
- >fabio.TiffIO.TAG_COLORMAP</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_COMPRESSION"
- >fabio.TiffIO.TAG_COMPRESSION</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_DATE"
- >fabio.TiffIO.TAG_DATE</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_ID"
- >fabio.TiffIO.TAG_ID</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_IMAGE_DESCRIPTION"
- >fabio.TiffIO.TAG_IMAGE_DESCRIPTION</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_NUMBER_OF_COLUMNS"
- >fabio.TiffIO.TAG_NUMBER_OF_COLUMNS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_NUMBER_OF_ROWS"
- >fabio.TiffIO.TAG_NUMBER_OF_ROWS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_PHOTOMETRIC_INTERPRETATION"
- >fabio.TiffIO.TAG_PHOTOMETRIC_INTERPRETATION</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_ROWS_PER_STRIP"
- >fabio.TiffIO.TAG_ROWS_PER_STRIP</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_SAMPLE_FORMAT"
- >fabio.TiffIO.TAG_SAMPLE_FORMAT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_SOFTWARE"
- >fabio.TiffIO.TAG_SOFTWARE</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_STRIP_BYTE_COUNTS"
- >fabio.TiffIO.TAG_STRIP_BYTE_COUNTS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_STRIP_OFFSETS"
- >fabio.TiffIO.TAG_STRIP_OFFSETS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#__package__"
- >fabio.TiffIO.__package__</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#__revision__"
- >fabio.TiffIO.__revision__</a><br /> <a target="mainFrame" href="fabio-module.html#__package__"
- >fabio.__package__</a><br /> <a target="mainFrame" href="fabio.adscimage-module.html#__package__"
- >fabio.adscimage.__package__</a><br /> <a target="mainFrame" href="fabio.adscimage-module.html#logger"
- >fabio.adscimage.logger</a><br /> <a target="mainFrame" href="fabio.binaryimage-module.html#__doc__"
- >fabio.binaryimage.__doc__</a><br /> <a target="mainFrame" href="fabio.binaryimage-module.html#__package__"
- >fabio.binaryimage.__package__</a><br /> <a target="mainFrame" href="fabio.binaryimage-module.html#logger"
- >fabio.binaryimage.logger</a><br /> <a target="mainFrame" href="fabio.bruker100image-module.html#__package__"
- >fabio.bruker100image.__package__</a><br /> <a target="mainFrame" href="fabio.bruker100image-module.html#logger"
- >fabio.bruker100image.logger</a><br /> <a target="mainFrame" href="fabio.brukerimage-module.html#__package__"
- >fabio.brukerimage.__package__</a><br /> <a target="mainFrame" href="fabio.brukerimage-module.html#logger"
- >fabio.brukerimage.logger</a><br /> <a target="mainFrame" href="fabio.byte_offset-module.html#__package__"
- >fabio.byte_offset.__package__</a><br /> <a target="mainFrame" href="fabio.byte_offset-module.html#__test__"
- >fabio.byte_offset.__test__</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#DATA_TYPES"
- >fabio.cbfimage.DATA_TYPES</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#MINIMUM_KEYS"
- >fabio.cbfimage.MINIMUM_KEYS</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#PADDING"
- >fabio.cbfimage.PADDING</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#STARTER"
- >fabio.cbfimage.STARTER</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#__package__"
- >fabio.cbfimage.__package__</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#logger"
- >fabio.cbfimage.logger</a><br /> <a target="mainFrame" href="fabio.cf_io-module.html#__package__"
- >fabio.cf_io.__package__</a><br /> <a target="mainFrame" href="fabio.compression-module.html#__package__"
- >fabio.compression.__package__</a><br /> <a target="mainFrame" href="fabio.compression-module.html#logger"
- >fabio.compression.logger</a><br /> <a target="mainFrame" href="fabio.converters-module.html#CONVERSION_DATA"
- >fabio.converters.CONVERSION_DATA</a><br /> <a target="mainFrame" href="fabio.converters-module.html#CONVERSION_HEADER"
- >fabio.converters.CONVERSION_HEADER</a><br /> <a target="mainFrame" href="fabio.converters-module.html#__package__"
- >fabio.converters.__package__</a><br /> <a target="mainFrame" href="fabio.converters-module.html#logger"
- >fabio.converters.logger</a><br /> <a target="mainFrame" href="fabio.datIO-module.html#__package__"
- >fabio.datIO.__package__</a><br /> <a target="mainFrame" href="fabio.dm3image-module.html#DATA_BYTES"
- >fabio.dm3image.DATA_BYTES</a><br /> <a target="mainFrame" href="fabio.dm3image-module.html#DATA_TYPES"
- >fabio.dm3image.DATA_TYPES</a><br /> <a target="mainFrame" href="fabio.dm3image-module.html#__package__"
- >fabio.dm3image.__package__</a><br /> <a target="mainFrame" href="fabio.dm3image-module.html#logger"
- >fabio.dm3image.logger</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#BLOCKSIZE"
- >fabio.edfimage.BLOCKSIZE</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#DATA_TYPES"
- >fabio.edfimage.DATA_TYPES</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#DEFAULT_VALUES"
- >fabio.edfimage.DEFAULT_VALUES</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#MINIMUM_KEYS"
- >fabio.edfimage.MINIMUM_KEYS</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#NUMPY_EDF_DTYPE"
- >fabio.edfimage.NUMPY_EDF_DTYPE</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#__package__"
- >fabio.edfimage.__package__</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#logger"
- >fabio.edfimage.logger</a><br /> <a target="mainFrame" href="fabio.fabioimage-module.html#__package__"
- >fabio.fabioimage.__package__</a><br /> <a target="mainFrame" href="fabio.fabioimage-module.html#logger"
- >fabio.fabioimage.logger</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#COMPRESSORS"
- >fabio.fabioutils.COMPRESSORS</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#FILETYPES"
- >fabio.fabioutils.FILETYPES</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#__package__"
- >fabio.fabioutils.__package__</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#dictAscii"
- >fabio.fabioutils.dictAscii</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#i"
- >fabio.fabioutils.i</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#key"
- >fabio.fabioutils.key</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#lines"
- >fabio.fabioutils.lines</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#logger"
- >fabio.fabioutils.logger</a><br /> <a target="mainFrame" href="fabio.file_series-module.html#__package__"
- >fabio.file_series.__package__</a><br /> <a target="mainFrame" href="fabio.file_series-module.html#logger"
- >fabio.file_series.logger</a><br /> <a target="mainFrame" href="fabio.fit2dmaskimage-module.html#__package__"
- >fabio.fit2dmaskimage.__package__</a><br /> <a target="mainFrame" href="fabio.fit2dspreadsheetimage-module.html#__package__"
- >fabio.fit2dspreadsheetimage.__package__</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#DATA_TYPES"
- >fabio.kcdimage.DATA_TYPES</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#DEFAULT_VALUES"
- >fabio.kcdimage.DEFAULT_VALUES</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#MINIMUM_KEYS"
- >fabio.kcdimage.MINIMUM_KEYS</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#__package__"
- >fabio.kcdimage.__package__</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#logger"
- >fabio.kcdimage.logger</a><br /> <a target="mainFrame" href="fabio.mar345_IO-module.html#__package__"
- >fabio.mar345_IO.__package__</a><br /> <a target="mainFrame" href="fabio.mar345_IO-module.html#__test__"
- >fabio.mar345_IO.__test__</a><br /> <a target="mainFrame" href="fabio.mar345image-module.html#__doc__"
- >fabio.mar345image.__doc__</a><br /> <a target="mainFrame" href="fabio.mar345image-module.html#__package__"
- >fabio.mar345image.__package__</a><br /> <a target="mainFrame" href="fabio.mar345image-module.html#logger"
- >fabio.mar345image.logger</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#CDEFINITION"
- >fabio.marccdimage.CDEFINITION</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#C_SIZES"
- >fabio.marccdimage.C_SIZES</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#C_TO_STRUCT"
- >fabio.marccdimage.C_TO_STRUCT</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#HEADER_FORMAT"
- >fabio.marccdimage.HEADER_FORMAT</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#HEADER_NAMES"
- >fabio.marccdimage.HEADER_NAMES</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#MAXIMAGES"
- >fabio.marccdimage.MAXIMAGES</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#__package__"
- >fabio.marccdimage.__package__</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#logger"
- >fabio.marccdimage.logger</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#MAGIC_NUMBERS"
- >fabio.openimage.MAGIC_NUMBERS</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#__package__"
- >fabio.openimage.__package__</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#logger"
- >fabio.openimage.logger</a><br /> <a target="mainFrame" href="fabio.pilatusimage-module.html#__package__"
- >fabio.pilatusimage.__package__</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#HEADERITEMS"
- >fabio.pnmimage.HEADERITEMS</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#P7HEADERITEMS"
- >fabio.pnmimage.P7HEADERITEMS</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#SUBFORMATS"
- >fabio.pnmimage.SUBFORMATS</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#__package__"
- >fabio.pnmimage.__package__</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#logger"
- >fabio.pnmimage.logger</a><br /> <a target="mainFrame" href="fabio.readbytestream-module.html#DATATYPES"
- >fabio.readbytestream.DATATYPES</a><br /> <a target="mainFrame" href="fabio.readbytestream-module.html#__package__"
- >fabio.readbytestream.__package__</a><br /> <a target="mainFrame" href="fabio.readbytestream-module.html#logger"
- >fabio.readbytestream.logger</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#BIG_ENDIAN"
- >fabio.tifimage.BIG_ENDIAN</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#LITTLE_ENDIAN"
- >fabio.tifimage.LITTLE_ENDIAN</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#PIL_TO_NUMPY"
- >fabio.tifimage.PIL_TO_NUMPY</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#TYPES"
- >fabio.tifimage.TYPES</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#TYPESIZES"
- >fabio.tifimage.TYPESIZES</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#__package__"
- >fabio.tifimage.__package__</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#baseline_tiff_tags"
- >fabio.tifimage.baseline_tiff_tags</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#logger"
- >fabio.tifimage.logger</a><br /> <a target="mainFrame" href="fabio-module.html#version"
- >fabio.version</a><br /> <a target="mainFrame" href="fabio.xsdimage-module.html#__package__"
- >fabio.xsdimage.__package__</a><br /> <a target="mainFrame" href="fabio.xsdimage-module.html#logger"
- >fabio.xsdimage.logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
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- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio-module.html b/doc/html/toc-fabio-module.html
deleted file mode 100644
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--- a/doc/html/toc-fabio-module.html
+++ /dev/null
@@ -1,32 +0,0 @@
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- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabio</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module fabio</h1>
-<hr />
- <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio-module.html#version"
- >version</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.GEimage-module.html b/doc/html/toc-fabio.GEimage-module.html
deleted file mode 100644
index bc6d60b..0000000
--- a/doc/html/toc-fabio.GEimage-module.html
+++ /dev/null
@@ -1,37 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>GEimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module GEimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.GEimage.GEimage-class.html"
- >GEimage</a><br /> <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.GEimage-module.html#demo"
- >demo</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.GEimage-module.html#GE_HEADER_INFO"
- >GE_HEADER_INFO</a><br /> <a target="mainFrame" href="fabio.GEimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.GEimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.GEimage_old-module.html b/doc/html/toc-fabio.GEimage_old-module.html
deleted file mode 100644
index 28f09b6..0000000
--- a/doc/html/toc-fabio.GEimage_old-module.html
+++ /dev/null
@@ -1,33 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>GEimage_old</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module GEimage_old</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.GEimage_old.GEimage-class.html"
- >GEimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.GEimage_old-module.html#__package__"
- >__package__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.HiPiCimage-module.html b/doc/html/toc-fabio.HiPiCimage-module.html
deleted file mode 100644
index cc5c419..0000000
--- a/doc/html/toc-fabio.HiPiCimage-module.html
+++ /dev/null
@@ -1,34 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>HiPiCimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module HiPiCimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.HiPiCimage.HiPiCimage-class.html"
- >HiPiCimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.HiPiCimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.HiPiCimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.OXDimage-module.html b/doc/html/toc-fabio.OXDimage-module.html
deleted file mode 100644
index 9b84e5a..0000000
--- a/doc/html/toc-fabio.OXDimage-module.html
+++ /dev/null
@@ -1,40 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>OXDimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module OXDimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.OXDimage.OXDimage-class.html"
- >OXDimage</a><br /> <a target="mainFrame" href="fabio.OXDimage.Section-class.html"
- >Section</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.OXDimage-module.html#DEFAULT_HEADERS"
- >DEFAULT_HEADERS</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#DETECTOR_TYPES"
- >DETECTOR_TYPES</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#__doc__"
- >__doc__</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#deg2rad"
- >deg2rad</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#logger"
- >logger</a><br /> <a target="mainFrame" href="fabio.OXDimage-module.html#rad2deg"
- >rad2deg</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.TiffIO-module.html b/doc/html/toc-fabio.TiffIO-module.html
deleted file mode 100644
index 12e2d56..0000000
--- a/doc/html/toc-fabio.TiffIO-module.html
+++ /dev/null
@@ -1,58 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>TiffIO</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module TiffIO</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.TiffIO.TiffIO-class.html"
- >TiffIO</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.TiffIO-module.html#ALLOW_MULTIPLE_STRIPS"
- >ALLOW_MULTIPLE_STRIPS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#DEBUG"
- >DEBUG</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#FIELD_TYPE"
- >FIELD_TYPE</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#FIELD_TYPE_OUT"
- >FIELD_TYPE_OUT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_COMPLEXIEEEFP"
- >SAMPLE_FORMAT_COMPLEXIEEEFP</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_COMPLEXINT"
- >SAMPLE_FORMAT_COMPLEXINT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_FLOAT"
- >SAMPLE_FORMAT_FLOAT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_INT"
- >SAMPLE_FORMAT_INT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_UINT"
- >SAMPLE_FORMAT_UINT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#SAMPLE_FORMAT_VOID"
- >SAMPLE_FORMAT_VOID</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_BITS_PER_SAMPLE"
- >TAG_BITS_PER_SAMPLE</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_COLORMAP"
- >TAG_COLORMAP</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_COMPRESSION"
- >TAG_COMPRESSION</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_DATE"
- >TAG_DATE</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_ID"
- >TAG_ID</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_IMAGE_DESCRIPTION"
- >TAG_IMAGE_DESCRIPTION</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_NUMBER_OF_COLUMNS"
- >TAG_NUMBER_OF_COLUMNS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_NUMBER_OF_ROWS"
- >TAG_NUMBER_OF_ROWS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_PHOTOMETRIC_INTERPRETATION"
- >TAG_PHOTOMETRIC_INTERPRETATION</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_ROWS_PER_STRIP"
- >TAG_ROWS_PER_STRIP</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_SAMPLE_FORMAT"
- >TAG_SAMPLE_FORMAT</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_SOFTWARE"
- >TAG_SOFTWARE</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_STRIP_BYTE_COUNTS"
- >TAG_STRIP_BYTE_COUNTS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#TAG_STRIP_OFFSETS"
- >TAG_STRIP_OFFSETS</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.TiffIO-module.html#__revision__"
- >__revision__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.adscimage-module.html b/doc/html/toc-fabio.adscimage-module.html
deleted file mode 100644
index c837781..0000000
--- a/doc/html/toc-fabio.adscimage-module.html
+++ /dev/null
@@ -1,36 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>adscimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module adscimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.adscimage.adscimage-class.html"
- >adscimage</a><br /> <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.adscimage-module.html#test"
- >test</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.adscimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.adscimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.binaryimage-module.html b/doc/html/toc-fabio.binaryimage-module.html
deleted file mode 100644
index 489969f..0000000
--- a/doc/html/toc-fabio.binaryimage-module.html
+++ /dev/null
@@ -1,35 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>binaryimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module binaryimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.binaryimage.binaryimage-class.html"
- >binaryimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.binaryimage-module.html#__doc__"
- >__doc__</a><br /> <a target="mainFrame" href="fabio.binaryimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.binaryimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.bruker100image-module.html b/doc/html/toc-fabio.bruker100image-module.html
deleted file mode 100644
index 32be6de..0000000
--- a/doc/html/toc-fabio.bruker100image-module.html
+++ /dev/null
@@ -1,34 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>bruker100image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module bruker100image</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.bruker100image.bruker100image-class.html"
- >bruker100image</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.bruker100image-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.bruker100image-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.brukerimage-module.html b/doc/html/toc-fabio.brukerimage-module.html
deleted file mode 100644
index 2a4c0f2..0000000
--- a/doc/html/toc-fabio.brukerimage-module.html
+++ /dev/null
@@ -1,36 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>brukerimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module brukerimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.brukerimage.brukerimage-class.html"
- >brukerimage</a><br /> <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.brukerimage-module.html#test"
- >test</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.brukerimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.brukerimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.byte_offset-module.html b/doc/html/toc-fabio.byte_offset-module.html
deleted file mode 100644
index 11fc7d1..0000000
--- a/doc/html/toc-fabio.byte_offset-module.html
+++ /dev/null
@@ -1,32 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>byte_offset</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module byte_offset</h1>
-<hr />
- <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.byte_offset-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.byte_offset-module.html#__test__"
- >__test__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.cbfimage-module.html b/doc/html/toc-fabio.cbfimage-module.html
deleted file mode 100644
index e6ccd0b..0000000
--- a/doc/html/toc-fabio.cbfimage-module.html
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>cbfimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module cbfimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.cbfimage.CIF-class.html"
- >CIF</a><br /> <a target="mainFrame" href="fabio.cbfimage.cbfimage-class.html"
- >cbfimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.cbfimage-module.html#DATA_TYPES"
- >DATA_TYPES</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#MINIMUM_KEYS"
- >MINIMUM_KEYS</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#PADDING"
- >PADDING</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#STARTER"
- >STARTER</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.cbfimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.cf_io-module.html b/doc/html/toc-fabio.cf_io-module.html
deleted file mode 100644
index ca8b439..0000000
--- a/doc/html/toc-fabio.cf_io-module.html
+++ /dev/null
@@ -1,33 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>cf_io</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module cf_io</h1>
-<hr />
- <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.cf_io-module.html#read"
- >read</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.cf_io-module.html#__package__"
- >__package__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.compression-module.html b/doc/html/toc-fabio.compression-module.html
deleted file mode 100644
index cf6c258..0000000
--- a/doc/html/toc-fabio.compression-module.html
+++ /dev/null
@@ -1,50 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>compression</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module compression</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="str-class.html"
- >str</a><br /> <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.compression-module.html#compByteOffet_numpy"
- >compByteOffet_numpy</a><br /> <a target="mainFrame" href="fabio.compression-module.html#compPCK"
- >compPCK</a><br /> <a target="mainFrame" href="fabio.compression-module.html#compTY1"
- >compTY1</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decByteOffet_cython"
- >decByteOffet_cython</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decByteOffet_numpy"
- >decByteOffet_numpy</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decByteOffet_python"
- >decByteOffet_python</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decByteOffet_weave"
- >decByteOffet_weave</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decBzip2"
- >decBzip2</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decGzip"
- >decGzip</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decKM4CCD"
- >decKM4CCD</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decPCK"
- >decPCK</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decTY1"
- >decTY1</a><br /> <a target="mainFrame" href="fabio.compression-module.html#decZlib"
- >decZlib</a><br /> <a target="mainFrame" href="fabio.compression-module.html#endianness"
- >endianness</a><br /> <a target="mainFrame" href="fabio.compression-module.html#md5sum"
- >md5sum</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.compression-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.compression-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.converters-module.html b/doc/html/toc-fabio.converters-module.html
deleted file mode 100644
index f6a6929..0000000
--- a/doc/html/toc-fabio.converters-module.html
+++ /dev/null
@@ -1,38 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>converters</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module converters</h1>
-<hr />
- <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.converters-module.html#convert_data"
- >convert_data</a><br /> <a target="mainFrame" href="fabio.converters-module.html#convert_data_integer"
- >convert_data_integer</a><br /> <a target="mainFrame" href="fabio.converters-module.html#convert_header"
- >convert_header</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.converters-module.html#CONVERSION_DATA"
- >CONVERSION_DATA</a><br /> <a target="mainFrame" href="fabio.converters-module.html#CONVERSION_HEADER"
- >CONVERSION_HEADER</a><br /> <a target="mainFrame" href="fabio.converters-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.converters-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.datIO-module.html b/doc/html/toc-fabio.datIO-module.html
deleted file mode 100644
index 375065c..0000000
--- a/doc/html/toc-fabio.datIO-module.html
+++ /dev/null
@@ -1,34 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>datIO</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module datIO</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.datIO.columnfile-class.html"
- >columnfile</a><br /> <a target="mainFrame" href="fabio.datIO.fabiodata-class.html"
- >fabiodata</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.datIO-module.html#__package__"
- >__package__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.dm3image-module.html b/doc/html/toc-fabio.dm3image-module.html
deleted file mode 100644
index 9a3d539..0000000
--- a/doc/html/toc-fabio.dm3image-module.html
+++ /dev/null
@@ -1,36 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>dm3image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module dm3image</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.dm3image.dm3image-class.html"
- >dm3image</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.dm3image-module.html#DATA_BYTES"
- >DATA_BYTES</a><br /> <a target="mainFrame" href="fabio.dm3image-module.html#DATA_TYPES"
- >DATA_TYPES</a><br /> <a target="mainFrame" href="fabio.dm3image-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.dm3image-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.edfimage-module.html b/doc/html/toc-fabio.edfimage-module.html
deleted file mode 100644
index 7605ba3..0000000
--- a/doc/html/toc-fabio.edfimage-module.html
+++ /dev/null
@@ -1,40 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>edfimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module edfimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.edfimage.Frame-class.html"
- >Frame</a><br /> <a target="mainFrame" href="fabio.edfimage.edfimage-class.html"
- >edfimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.edfimage-module.html#BLOCKSIZE"
- >BLOCKSIZE</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#DATA_TYPES"
- >DATA_TYPES</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#DEFAULT_VALUES"
- >DEFAULT_VALUES</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#MINIMUM_KEYS"
- >MINIMUM_KEYS</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#NUMPY_EDF_DTYPE"
- >NUMPY_EDF_DTYPE</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.edfimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.fabioimage-module.html b/doc/html/toc-fabio.fabioimage-module.html
deleted file mode 100644
index 8534cbb..0000000
--- a/doc/html/toc-fabio.fabioimage-module.html
+++ /dev/null
@@ -1,37 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabioimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module fabioimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.fabioimage.fabioStream-class.html"
- >fabioStream</a><br /> <a target="mainFrame" href="fabio.fabioimage.fabioimage-class.html"
- >fabioimage</a><br /> <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.fabioimage-module.html#test"
- >test</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.fabioimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.fabioimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.fabioutils-module.html b/doc/html/toc-fabio.fabioutils-module.html
deleted file mode 100644
index 946d52b..0000000
--- a/doc/html/toc-fabio.fabioutils-module.html
+++ /dev/null
@@ -1,51 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fabioutils</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module fabioutils</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.fabioutils.filename_object-class.html"
- >filename_object</a><br /> <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.fabioutils-module.html#construct_filename"
- >construct_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#deconstruct_filename"
- >deconstruct_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#extract_filenumber"
- >extract_filenumber</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#getnum"
- >getnum</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#isAscii"
- >isAscii</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#jump_filename"
- >jump_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#next_filename"
- >next_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#numstem"
- >numstem</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#previous_filename"
- >previous_filename</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#toAscii"
- >toAscii</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.fabioutils-module.html#COMPRESSORS"
- >COMPRESSORS</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#FILETYPES"
- >FILETYPES</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#dictAscii"
- >dictAscii</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#i"
- >i</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#key"
- >key</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#lines"
- >lines</a><br /> <a target="mainFrame" href="fabio.fabioutils-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.file_series-module.html b/doc/html/toc-fabio.file_series-module.html
deleted file mode 100644
index f847eeb..0000000
--- a/doc/html/toc-fabio.file_series-module.html
+++ /dev/null
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>file_series</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module file_series</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.file_series.file_series-class.html"
- >file_series</a><br /> <a target="mainFrame" href="fabio.file_series.filename_series-class.html"
- >filename_series</a><br /> <a target="mainFrame" href="fabio.file_series.numbered_file_series-class.html"
- >numbered_file_series</a><br /> <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.file_series-module.html#new_file_series"
- >new_file_series</a><br /> <a target="mainFrame" href="fabio.file_series-module.html#new_file_series0"
- >new_file_series0</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.file_series-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.file_series-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.fit2dmaskimage-module.html b/doc/html/toc-fabio.fit2dmaskimage-module.html
deleted file mode 100644
index 119c864..0000000
--- a/doc/html/toc-fabio.fit2dmaskimage-module.html
+++ /dev/null
@@ -1,33 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fit2dmaskimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module fit2dmaskimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.fit2dmaskimage.fit2dmaskimage-class.html"
- >fit2dmaskimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.fit2dmaskimage-module.html#__package__"
- >__package__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.fit2dspreadsheetimage-module.html b/doc/html/toc-fabio.fit2dspreadsheetimage-module.html
deleted file mode 100644
index 51801c4..0000000
--- a/doc/html/toc-fabio.fit2dspreadsheetimage-module.html
+++ /dev/null
@@ -1,33 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>fit2dspreadsheetimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module fit2dspreadsheetimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html"
- >fit2dspreadsheetimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.fit2dspreadsheetimage-module.html#__package__"
- >__package__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.kcdimage-module.html b/doc/html/toc-fabio.kcdimage-module.html
deleted file mode 100644
index 1b0d855..0000000
--- a/doc/html/toc-fabio.kcdimage-module.html
+++ /dev/null
@@ -1,37 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>kcdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module kcdimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.kcdimage.kcdimage-class.html"
- >kcdimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.kcdimage-module.html#DATA_TYPES"
- >DATA_TYPES</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#DEFAULT_VALUES"
- >DEFAULT_VALUES</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#MINIMUM_KEYS"
- >MINIMUM_KEYS</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.kcdimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.mar345_IO-module.html b/doc/html/toc-fabio.mar345_IO-module.html
deleted file mode 100644
index 4cd76e4..0000000
--- a/doc/html/toc-fabio.mar345_IO-module.html
+++ /dev/null
@@ -1,32 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>mar345_IO</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module mar345_IO</h1>
-<hr />
- <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.mar345_IO-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.mar345_IO-module.html#__test__"
- >__test__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.mar345image-module.html b/doc/html/toc-fabio.mar345image-module.html
deleted file mode 100644
index 2144ac2..0000000
--- a/doc/html/toc-fabio.mar345image-module.html
+++ /dev/null
@@ -1,35 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>mar345image</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module mar345image</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.mar345image.mar345image-class.html"
- >mar345image</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.mar345image-module.html#__doc__"
- >__doc__</a><br /> <a target="mainFrame" href="fabio.mar345image-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.mar345image-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.marccdimage-module.html b/doc/html/toc-fabio.marccdimage-module.html
deleted file mode 100644
index d2286c3..0000000
--- a/doc/html/toc-fabio.marccdimage-module.html
+++ /dev/null
@@ -1,43 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>marccdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module marccdimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.marccdimage.marccdimage-class.html"
- >marccdimage</a><br /> <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.marccdimage-module.html#interpret_header"
- >interpret_header</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#make_format"
- >make_format</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.marccdimage-module.html#CDEFINITION"
- >CDEFINITION</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#C_SIZES"
- >C_SIZES</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#C_TO_STRUCT"
- >C_TO_STRUCT</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#HEADER_FORMAT"
- >HEADER_FORMAT</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#HEADER_NAMES"
- >HEADER_NAMES</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#MAXIMAGES"
- >MAXIMAGES</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.marccdimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.openimage-module.html b/doc/html/toc-fabio.openimage-module.html
deleted file mode 100644
index bf07e0a..0000000
--- a/doc/html/toc-fabio.openimage-module.html
+++ /dev/null
@@ -1,40 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>openimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module openimage</h1>
-<hr />
- <h2 class="toc">Functions</h2>
- <div class="private">
- <a target="mainFrame" href="fabio.openimage-module.html#_openimage"
- >_openimage</a><br /> </div>
- <a target="mainFrame" href="fabio.openimage-module.html#do_magic"
- >do_magic</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#openheader"
- >openheader</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#openimage"
- >openimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.openimage-module.html#MAGIC_NUMBERS"
- >MAGIC_NUMBERS</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.openimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.pilatusimage-module.html b/doc/html/toc-fabio.pilatusimage-module.html
deleted file mode 100644
index 98c2a52..0000000
--- a/doc/html/toc-fabio.pilatusimage-module.html
+++ /dev/null
@@ -1,33 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>pilatusimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module pilatusimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.pilatusimage.pilatusimage-class.html"
- >pilatusimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.pilatusimage-module.html#__package__"
- >__package__</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.pnmimage-module.html b/doc/html/toc-fabio.pnmimage-module.html
deleted file mode 100644
index 71b6a0d..0000000
--- a/doc/html/toc-fabio.pnmimage-module.html
+++ /dev/null
@@ -1,37 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>pnmimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module pnmimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.pnmimage.pnmimage-class.html"
- >pnmimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.pnmimage-module.html#HEADERITEMS"
- >HEADERITEMS</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#P7HEADERITEMS"
- >P7HEADERITEMS</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#SUBFORMATS"
- >SUBFORMATS</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.pnmimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.readbytestream-module.html b/doc/html/toc-fabio.readbytestream-module.html
deleted file mode 100644
index b62c3c8..0000000
--- a/doc/html/toc-fabio.readbytestream-module.html
+++ /dev/null
@@ -1,35 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>readbytestream</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module readbytestream</h1>
-<hr />
- <h2 class="toc">Functions</h2>
- <a target="mainFrame" href="fabio.readbytestream-module.html#readbytestream"
- >readbytestream</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.readbytestream-module.html#DATATYPES"
- >DATATYPES</a><br /> <a target="mainFrame" href="fabio.readbytestream-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.readbytestream-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.tifimage-module.html b/doc/html/toc-fabio.tifimage-module.html
deleted file mode 100644
index 775d3af..0000000
--- a/doc/html/toc-fabio.tifimage-module.html
+++ /dev/null
@@ -1,43 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>tifimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module tifimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.tifimage.Image_File_Directory-class.html"
- >Image_File_Directory</a><br /> <a target="mainFrame" href="fabio.tifimage.Image_File_Directory_entry-class.html"
- >Image_File_Directory_entry</a><br /> <a target="mainFrame" href="fabio.tifimage.Tiff_header-class.html"
- >Tiff_header</a><br /> <a target="mainFrame" href="fabio.tifimage.tifimage-class.html"
- >tifimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.tifimage-module.html#BIG_ENDIAN"
- >BIG_ENDIAN</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#LITTLE_ENDIAN"
- >LITTLE_ENDIAN</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#PIL_TO_NUMPY"
- >PIL_TO_NUMPY</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#TYPES"
- >TYPES</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#TYPESIZES"
- >TYPESIZES</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#baseline_tiff_tags"
- >baseline_tiff_tags</a><br /> <a target="mainFrame" href="fabio.tifimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc-fabio.xsdimage-module.html b/doc/html/toc-fabio.xsdimage-module.html
deleted file mode 100644
index e01dfc3..0000000
--- a/doc/html/toc-fabio.xsdimage-module.html
+++ /dev/null
@@ -1,34 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>xsdimage</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Module xsdimage</h1>
-<hr />
- <h2 class="toc">Classes</h2>
- <a target="mainFrame" href="fabio.xsdimage.xsdimage-class.html"
- >xsdimage</a><br /> <h2 class="toc">Variables</h2>
- <a target="mainFrame" href="fabio.xsdimage-module.html#__package__"
- >__package__</a><br /> <a target="mainFrame" href="fabio.xsdimage-module.html#logger"
- >logger</a><br /><hr />
-<span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/doc/html/toc.html b/doc/html/toc.html
deleted file mode 100644
index 54acdda..0000000
--- a/doc/html/toc.html
+++ /dev/null
@@ -1,65 +0,0 @@
-<?xml version="1.0" encoding="ascii"?>
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
- "DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-<head>
- <title>Table of Contents</title>
- <link rel="stylesheet" href="epydoc.css" type="text/css" />
- <script type="text/javascript" src="epydoc.js"></script>
-</head>
-
-<body bgcolor="white" text="black" link="blue" vlink="#204080"
- alink="#204080">
-<h1 class="toc">Table of Contents</h1>
-<hr />
- <a target="moduleFrame" href="toc-everything.html">Everything</a>
- <br />
- <h2 class="toc">Modules</h2>
- <a target="moduleFrame" href="toc-fabio-module.html"
- onclick="setFrame('toc-fabio-module.html','fabio-module.html');" >fabio</a><br /> <a target="moduleFrame" href="toc-fabio.GEimage-module.html"
- onclick="setFrame('toc-fabio.GEimage-module.html','fabio.GEimage-module.html');" >fabio.GEimage</a><br /> <a target="moduleFrame" href="toc-fabio.GEimage_old-module.html"
- onclick="setFrame('toc-fabio.GEimage_old-module.html','fabio.GEimage_old-module.html');" >fabio.GEimage_old</a><br /> <a target="moduleFrame" href="toc-fabio.HiPiCimage-module.html"
- onclick="setFrame('toc-fabio.HiPiCimage-module.html','fabio.HiPiCimage-module.html');" >fabio.HiPiCimage</a><br /> <a target="moduleFrame" href="toc-fabio.OXDimage-module.html"
- onclick="setFrame('toc-fabio.OXDimage-module.html','fabio.OXDimage-module.html');" >fabio.OXDimage</a><br /> <a target="moduleFrame" href="toc-fabio.TiffIO-module.html"
- onclick="setFrame('toc-fabio.TiffIO-module.html','fabio.TiffIO-module.html');" >fabio.TiffIO</a><br /> <a target="moduleFrame" href="toc-fabio.adscimage-module.html"
- onclick="setFrame('toc-fabio.adscimage-module.html','fabio.adscimage-module.html');" >fabio.adscimage</a><br /> <a target="moduleFrame" href="toc-fabio.binaryimage-module.html"
- onclick="setFrame('toc-fabio.binaryimage-module.html','fabio.binaryimage-module.html');" >fabio.binaryimage</a><br /> <a target="moduleFrame" href="toc-fabio.bruker100image-module.html"
- onclick="setFrame('toc-fabio.bruker100image-module.html','fabio.bruker100image-module.html');" >fabio.bruker100image</a><br /> <a target="moduleFrame" href="toc-fabio.brukerimage-module.html"
- onclick="setFrame('toc-fabio.brukerimage-module.html','fabio.brukerimage-module.html');" >fabio.brukerimage</a><br /> <a target="moduleFrame" href="toc-fabio.byte_offset-module.html"
- onclick="setFrame('toc-fabio.byte_offset-module.html','fabio.byte_offset-module.html');" >fabio.byte_offset</a><br /> <a target="moduleFrame" href="toc-fabio.cbfimage-module.html"
- onclick="setFrame('toc-fabio.cbfimage-module.html','fabio.cbfimage-module.html');" >fabio.cbfimage</a><br /> <a target="moduleFrame" href="toc-fabio.cf_io-module.html"
- onclick="setFrame('toc-fabio.cf_io-module.html','fabio.cf_io-module.html');" >fabio.cf_io</a><br /> <a target="moduleFrame" href="toc-fabio.compression-module.html"
- onclick="setFrame('toc-fabio.compression-module.html','fabio.compression-module.html');" >fabio.compression</a><br /> <a target="moduleFrame" href="toc-fabio.converters-module.html"
- onclick="setFrame('toc-fabio.converters-module.html','fabio.converters-module.html');" >fabio.converters</a><br /> <a target="moduleFrame" href="toc-fabio.datIO-module.html"
- onclick="setFrame('toc-fabio.datIO-module.html','fabio.datIO-module.html');" >fabio.datIO</a><br /> <a target="moduleFrame" href="toc-fabio.dm3image-module.html"
- onclick="setFrame('toc-fabio.dm3image-module.html','fabio.dm3image-module.html');" >fabio.dm3image</a><br /> <a target="moduleFrame" href="toc-fabio.edfimage-module.html"
- onclick="setFrame('toc-fabio.edfimage-module.html','fabio.edfimage-module.html');" >fabio.edfimage</a><br /> <a target="moduleFrame" href="toc-fabio.fabioimage-module.html"
- onclick="setFrame('toc-fabio.fabioimage-module.html','fabio.fabioimage-module.html');" >fabio.fabioimage</a><br /> <a target="moduleFrame" href="toc-fabio.fabioutils-module.html"
- onclick="setFrame('toc-fabio.fabioutils-module.html','fabio.fabioutils-module.html');" >fabio.fabioutils</a><br /> <a target="moduleFrame" href="toc-fabio.file_series-module.html"
- onclick="setFrame('toc-fabio.file_series-module.html','fabio.file_series-module.html');" >fabio.file_series</a><br /> <a target="moduleFrame" href="toc-fabio.fit2dmaskimage-module.html"
- onclick="setFrame('toc-fabio.fit2dmaskimage-module.html','fabio.fit2dmaskimage-module.html');" >fabio.fit2dmaskimage</a><br /> <a target="moduleFrame" href="toc-fabio.fit2dspreadsheetimage-module.html"
- onclick="setFrame('toc-fabio.fit2dspreadsheetimage-module.html','fabio.fit2dspreadsheetimage-module.html');" >fabio.fit2dspreadsheetimage</a><br /> <a target="moduleFrame" href="toc-fabio.kcdimage-module.html"
- onclick="setFrame('toc-fabio.kcdimage-module.html','fabio.kcdimage-module.html');" >fabio.kcdimage</a><br /> <a target="moduleFrame" href="toc-fabio.mar345_IO-module.html"
- onclick="setFrame('toc-fabio.mar345_IO-module.html','fabio.mar345_IO-module.html');" >fabio.mar345_IO</a><br /> <a target="moduleFrame" href="toc-fabio.mar345image-module.html"
- onclick="setFrame('toc-fabio.mar345image-module.html','fabio.mar345image-module.html');" >fabio.mar345image</a><br /> <a target="moduleFrame" href="toc-fabio.marccdimage-module.html"
- onclick="setFrame('toc-fabio.marccdimage-module.html','fabio.marccdimage-module.html');" >fabio.marccdimage</a><br /> <a target="moduleFrame" href="toc-fabio.openimage-module.html"
- onclick="setFrame('toc-fabio.openimage-module.html','fabio.openimage-module.html');" >fabio.openimage</a><br /> <a target="moduleFrame" href="toc-fabio.pilatusimage-module.html"
- onclick="setFrame('toc-fabio.pilatusimage-module.html','fabio.pilatusimage-module.html');" >fabio.pilatusimage</a><br /> <a target="moduleFrame" href="toc-fabio.pnmimage-module.html"
- onclick="setFrame('toc-fabio.pnmimage-module.html','fabio.pnmimage-module.html');" >fabio.pnmimage</a><br /> <a target="moduleFrame" href="toc-fabio.readbytestream-module.html"
- onclick="setFrame('toc-fabio.readbytestream-module.html','fabio.readbytestream-module.html');" >fabio.readbytestream</a><br /> <a target="moduleFrame" href="toc-fabio.tifimage-module.html"
- onclick="setFrame('toc-fabio.tifimage-module.html','fabio.tifimage-module.html');" >fabio.tifimage</a><br /> <a target="moduleFrame" href="toc-fabio.xsdimage-module.html"
- onclick="setFrame('toc-fabio.xsdimage-module.html','fabio.xsdimage-module.html');" >fabio.xsdimage</a><br /><hr />
- <span class="options">[<a href="javascript:void(0);" class="privatelink"
- onclick="toggle_private();">hide private</a>]</span>
-
-<script type="text/javascript">
- <!--
- // Private objects are initially displayed (because if
- // javascript is turned off then we want them to be
- // visible); but by default, we want to hide them. So hide
- // them unless we have a cookie that says to show them.
- checkCookie();
- // -->
-</script>
-</body>
-</html>
diff --git a/fabio-src/fabioutils.py b/fabio-src/fabioutils.py
deleted file mode 100644
index 3897ee3..0000000
--- a/fabio-src/fabioutils.py
+++ /dev/null
@@ -1,284 +0,0 @@
-#!/usr/bin/env python
-#coding: utf8
-
-"""
-General purpose utilities functions for fabio
-"""
-
-import re, os, logging
-logger = logging.getLogger("fabioutils")
-
-
-FILETYPES = {
- # extension NNNimage fabioclass
- # type consistency - always use a list if one case is
- 'edf' : ['edf'],
- 'cor' : ['edf'],
- 'pnm' : ['pnm'],
- 'pgm' : ['pnm'],
- 'pbm' : ['pnm'],
- 'tif' : ['tif'],
- 'tiff' : ['tif'],
- 'img' : ['adsc', 'OXD', 'HiPiC'],
- 'mccd' : ['marccd'],
- 'mar2300': ['mar345'],
- 'sfrm' : ['bruker100'],
- 'msk' : ['fit2dmask'],
- 'spr' : ['fit2dspreadsheet'],
- 'dm3' : ['dm3'],
- 'kcd' : ['kcd'],
- 'cbf' : ['cbf'],
- 'xml' : ["xsd"],
- 'xsd' : ["xsd"],
- }
-
-# Add bzipped and gzipped
-for key in FILETYPES.keys():
- FILETYPES[key + ".bz2"] = FILETYPES[key]
- FILETYPES[key + ".gz"] = FILETYPES[key]
-
-
-# Compressors
-
-COMPRESSORS = {}
-
-
-dictAscii = {None:[chr(i) for i in range(32, 127)],
- }
-
-try:
- lines = os.popen("gzip -h 2>&1").read()
- # Looking for "usage"
- if "sage" in lines:
- COMPRESSORS['.gz'] = 'gzip -dc '
- else:
- COMPRESSORS['.gz'] = None
-except:
- COMPRESSORS['.gz'] = None
-
-try:
- lines = os.popen("bzip2 -h 2>&1").read()
- # Looking for "usage"
- if "sage" in lines:
- COMPRESSORS['.bz2'] = 'bzip2 -dc '
- else:
- COMPRESSORS['.bz2'] = None
-except:
- COMPRESSORS['.bz2'] = None
-
-
-def getnum(name):
- """
- # try to figure out a file number
- # guess it starts at the back
- """
- stem , num, post_num = numstem(name)
- try:
- return int(num)
- except ValueError:
- return None
-
-class filename_object:
- """
- The 'meaning' of a filename
- """
- def __init__(self, stem,
- num=None,
- directory=None,
- format=None,
- extension=None,
- postnum=None,
- digits=4):
- self.stem = stem
- self.num = num
- self.format = format
- self.extension = extension
- self.digits = digits
- self.postnum = postnum
- self.directory = directory
-
- def str(self):
- """ Return a string representation """
- fmt = "stem %s, num %s format %s extension %s " + \
- "postnum = %s digits %s dir %s"
- return fmt % tuple([str(x) for x in [
- self.stem ,
- self.num ,
- self.format ,
- self.extension ,
- self.postnum ,
- self.digits ,
- self.directory ] ])
-
-
- def tostring(self):
- """
- convert yourself to a string
- """
- name = self.stem
- if self.digits is not None and self.num is not None:
- fmt = "%0" + str(self.digits) + "d"
- name += fmt % self.num
- if self.postnum is not None:
- name += self.postnum
- if self.extension is not None:
- name += self.extension
- if self.directory is not None:
- name = os.path.join(self.directory, name)
- return name
-
-
-def numstem(name):
- """ cant see how to do without reversing strings
- Match 1 or more digits going backwards from the end of the string
- """
- reg = re.compile(r"^(.*?)(-?[0-9]{0,9})(\D*)$")
- #reg = re.compile("""(\D*)(\d\d*)(\w*)""")
- try:
- res = reg.match(name).groups()
- #res = reg.match(name[::-1]).groups()
- #return [ r[::-1] for r in res[::-1]]
- if len(res[0]) == len(res[1]) == 0: # Hack for file without number
- return [res[2], '', '']
- return [ r for r in res]
- except AttributeError: # no digits found
- return [name, "", ""]
-
-def deconstruct_filename(filename):
- """
- Break up a filename to get image type and number
- """
- direc , name = os.path.split(filename)
- if len(direc) == 0:
- direc = None
- parts = os.path.split(name)[-1].split(".")
- # loop back from end
- compressed = False
- extn = ""
- postnum = ""
- ndigit = 4
- if parts[-1] in ["gz", "bz2"]:
- extn = "." + parts[-1]
- parts = parts[:-1]
- compressed = True
- if parts[-1] in FILETYPES.keys():
- typ = FILETYPES[parts[-1]]
- extn = "." + parts[-1] + extn
- try:
- stem , numstring, postnum = numstem(".".join(parts[:-1]))
- num = int(numstring)
- ndigit = len(numstring)
- except:
- # There is no number - hence make num be None, not 0
- num = None
- stem = "".join(parts[:-1])
- else:
- # Probably two type left
- if len(parts) == 1:
- # Probably GE format stem_numb
- parts2 = parts[0].split("_")
- try:
- num = int(parts2[-1])
- ndigit = len(parts2[-1])
- typ = ['GE']
- stem = "_".join(parts2[:-1]) + "_"
- except:
- pass
- else:
- try:
- num = int(parts[-1])
- ndigit = len(parts[-1])
- typ = ['bruker']
- stem = ".".join(parts[:-1]) + "."
- except:
- typ = None
- extn = "." + parts[-1] + extn
- try:
- stem , numstring, postnum = numstem(".".join(parts[:-1]))
- num = int(numstring)
- ndigit = len(numstring)
- except:
- raise
- # raise Exception("Cannot decode "+filename)
- obj = filename_object(stem,
- num=num,
- directory=direc,
- format=typ,
- extension=extn,
- postnum=postnum,
- digits=ndigit)
- return obj
-
-def construct_filename(filename, frame):
- "Try to construct the filename for a given frame"
- fo = deconstruct_filename(filename)
- fo.num = frame
- return fo.tostring()
-
-def next_filename(name, padding=True):
- """ increment number """
- obj = deconstruct_filename(name)
- obj.num += 1
- if not padding:
- obj.digits = 0
- return obj.tostring()
-
-def previous_filename(name, padding=True):
- """ decrement number """
- obj = deconstruct_filename(name)
- obj.num -= 1
- if not padding:
- obj.digits = 0
- return obj.tostring()
-
-def jump_filename(name, num, padding=True):
- """ jump to number """
- obj = deconstruct_filename(name)
- obj.num = num
- if not padding:
- obj.digits = 0
- return obj.tostring()
-
-
-def extract_filenumber(name):
- """ extract file number """
- obj = deconstruct_filename(name)
- return obj.num
-
-def isAscii(name, listExcluded=None):
- """
- @param name: string to check
- @param listExcluded: list of char or string excluded.
- @return: True of False whether name is pure ascii or not
- """
- isascii = None
- try:
- name.decode("ascii")
- except UnicodeDecodeError:
- isascii = False
- else:
- if listExcluded:
- isascii = not(any(bad in name for bad in listExcluded))
- else:
- isascii = True
- return isascii
-
-def toAscii(name, excluded=None):
- """
- @param name: string to check
- @param excluded: tuple of char or string excluded (not list: they are mutable).
- @return: the name with all non valid char removed
- """
- if excluded not in dictAscii:
- ascii = dictAscii[None][:]
- for i in excluded:
- if i in ascii:
- ascii.remove(i)
- else:
- logger.error("toAscii: % not in ascii table" % i)
- dictAscii[excluded] = ascii
- else:
- ascii = dictAscii[excluded]
- out = [i for i in str(name) if i in ascii]
- return "".join(out)
-
diff --git a/fabio.egg-info/SOURCES.txt b/fabio.egg-info/SOURCES.txt
deleted file mode 100644
index 25d13b1..0000000
--- a/fabio.egg-info/SOURCES.txt
+++ /dev/null
@@ -1,222 +0,0 @@
-MANIFEST.in
-README.TXT
-build-deb.sh
-setup.py
-stdeb.cfg
-doc/fabio-api.pdf
-doc/html/api-objects.txt
-doc/html/class-tree.html
-doc/html/crarr.png
-doc/html/epydoc.css
-doc/html/epydoc.js
-doc/html/fabio-module.html
-doc/html/fabio-pysrc.html
-doc/html/fabio.GEimage-module.html
-doc/html/fabio.GEimage-pysrc.html
-doc/html/fabio.GEimage.GEimage-class.html
-doc/html/fabio.GEimage_old-module.html
-doc/html/fabio.GEimage_old-pysrc.html
-doc/html/fabio.GEimage_old.GEimage-class.html
-doc/html/fabio.HiPiCimage-module.html
-doc/html/fabio.HiPiCimage-pysrc.html
-doc/html/fabio.HiPiCimage.HiPiCimage-class.html
-doc/html/fabio.OXDimage-module.html
-doc/html/fabio.OXDimage-pysrc.html
-doc/html/fabio.OXDimage.OXDimage-class.html
-doc/html/fabio.OXDimage.Section-class.html
-doc/html/fabio.TiffIO-module.html
-doc/html/fabio.TiffIO-pysrc.html
-doc/html/fabio.TiffIO.TiffIO-class.html
-doc/html/fabio.adscimage-module.html
-doc/html/fabio.adscimage-pysrc.html
-doc/html/fabio.adscimage.adscimage-class.html
-doc/html/fabio.binaryimage-module.html
-doc/html/fabio.binaryimage-pysrc.html
-doc/html/fabio.binaryimage.binaryimage-class.html
-doc/html/fabio.bruker100image-module.html
-doc/html/fabio.bruker100image-pysrc.html
-doc/html/fabio.bruker100image.bruker100image-class.html
-doc/html/fabio.brukerimage-module.html
-doc/html/fabio.brukerimage-pysrc.html
-doc/html/fabio.brukerimage.brukerimage-class.html
-doc/html/fabio.byte_offset-module.html
-doc/html/fabio.cbfimage-module.html
-doc/html/fabio.cbfimage-pysrc.html
-doc/html/fabio.cbfimage.CIF-class.html
-doc/html/fabio.cbfimage.cbfimage-class.html
-doc/html/fabio.cf_io-module.html
-doc/html/fabio.compression-module.html
-doc/html/fabio.compression-pysrc.html
-doc/html/fabio.converters-module.html
-doc/html/fabio.converters-pysrc.html
-doc/html/fabio.datIO-module.html
-doc/html/fabio.datIO-pysrc.html
-doc/html/fabio.datIO.columnfile-class.html
-doc/html/fabio.datIO.fabiodata-class.html
-doc/html/fabio.dm3image-module.html
-doc/html/fabio.dm3image-pysrc.html
-doc/html/fabio.dm3image.dm3image-class.html
-doc/html/fabio.edfimage-module.html
-doc/html/fabio.edfimage-pysrc.html
-doc/html/fabio.edfimage.Frame-class.html
-doc/html/fabio.edfimage.edfimage-class.html
-doc/html/fabio.fabioimage-module.html
-doc/html/fabio.fabioimage-pysrc.html
-doc/html/fabio.fabioimage.fabioStream-class.html
-doc/html/fabio.fabioimage.fabioimage-class.html
-doc/html/fabio.fabioutils-module.html
-doc/html/fabio.fabioutils-pysrc.html
-doc/html/fabio.fabioutils.filename_object-class.html
-doc/html/fabio.file_series-module.html
-doc/html/fabio.file_series-pysrc.html
-doc/html/fabio.file_series.file_series-class.html
-doc/html/fabio.file_series.filename_series-class.html
-doc/html/fabio.file_series.numbered_file_series-class.html
-doc/html/fabio.fit2dmaskimage-module.html
-doc/html/fabio.fit2dmaskimage-pysrc.html
-doc/html/fabio.fit2dmaskimage.fit2dmaskimage-class.html
-doc/html/fabio.fit2dspreadsheetimage-module.html
-doc/html/fabio.fit2dspreadsheetimage-pysrc.html
-doc/html/fabio.fit2dspreadsheetimage.fit2dspreadsheetimage-class.html
-doc/html/fabio.kcdimage-module.html
-doc/html/fabio.kcdimage-pysrc.html
-doc/html/fabio.kcdimage.kcdimage-class.html
-doc/html/fabio.mar345_IO-module.html
-doc/html/fabio.mar345image-module.html
-doc/html/fabio.mar345image-pysrc.html
-doc/html/fabio.mar345image.mar345image-class.html
-doc/html/fabio.marccdimage-module.html
-doc/html/fabio.marccdimage-pysrc.html
-doc/html/fabio.marccdimage.marccdimage-class.html
-doc/html/fabio.openimage-module.html
-doc/html/fabio.openimage-pysrc.html
-doc/html/fabio.pilatusimage-module.html
-doc/html/fabio.pilatusimage-pysrc.html
-doc/html/fabio.pilatusimage.pilatusimage-class.html
-doc/html/fabio.pnmimage-module.html
-doc/html/fabio.pnmimage-pysrc.html
-doc/html/fabio.pnmimage.pnmimage-class.html
-doc/html/fabio.readbytestream-module.html
-doc/html/fabio.readbytestream-pysrc.html
-doc/html/fabio.tifimage-module.html
-doc/html/fabio.tifimage-pysrc.html
-doc/html/fabio.tifimage.Image_File_Directory-class.html
-doc/html/fabio.tifimage.Image_File_Directory_entry-class.html
-doc/html/fabio.tifimage.Tiff_header-class.html
-doc/html/fabio.tifimage.tifimage-class.html
-doc/html/fabio.xsdimage-module.html
-doc/html/fabio.xsdimage-pysrc.html
-doc/html/fabio.xsdimage.xsdimage-class.html
-doc/html/frames.html
-doc/html/help.html
-doc/html/identifier-index.html
-doc/html/index.html
-doc/html/module-tree.html
-doc/html/redirect.html
-doc/html/str-class.html
-doc/html/toc-everything.html
-doc/html/toc-fabio-module.html
-doc/html/toc-fabio.GEimage-module.html
-doc/html/toc-fabio.GEimage_old-module.html
-doc/html/toc-fabio.HiPiCimage-module.html
-doc/html/toc-fabio.OXDimage-module.html
-doc/html/toc-fabio.TiffIO-module.html
-doc/html/toc-fabio.adscimage-module.html
-doc/html/toc-fabio.binaryimage-module.html
-doc/html/toc-fabio.bruker100image-module.html
-doc/html/toc-fabio.brukerimage-module.html
-doc/html/toc-fabio.byte_offset-module.html
-doc/html/toc-fabio.cbfimage-module.html
-doc/html/toc-fabio.cf_io-module.html
-doc/html/toc-fabio.compression-module.html
-doc/html/toc-fabio.converters-module.html
-doc/html/toc-fabio.datIO-module.html
-doc/html/toc-fabio.dm3image-module.html
-doc/html/toc-fabio.edfimage-module.html
-doc/html/toc-fabio.fabioimage-module.html
-doc/html/toc-fabio.fabioutils-module.html
-doc/html/toc-fabio.file_series-module.html
-doc/html/toc-fabio.fit2dmaskimage-module.html
-doc/html/toc-fabio.fit2dspreadsheetimage-module.html
-doc/html/toc-fabio.kcdimage-module.html
-doc/html/toc-fabio.mar345_IO-module.html
-doc/html/toc-fabio.mar345image-module.html
-doc/html/toc-fabio.marccdimage-module.html
-doc/html/toc-fabio.openimage-module.html
-doc/html/toc-fabio.pilatusimage-module.html
-doc/html/toc-fabio.pnmimage-module.html
-doc/html/toc-fabio.readbytestream-module.html
-doc/html/toc-fabio.tifimage-module.html
-doc/html/toc-fabio.xsdimage-module.html
-doc/html/toc.html
-fabio-src/GEimage.py
-fabio-src/GEimage_old.py
-fabio-src/HiPiCimage.py
-fabio-src/OXDimage.py
-fabio-src/TiffIO.py
-fabio-src/__init__.py
-fabio-src/adscimage.py
-fabio-src/binaryimage.py
-fabio-src/bruker100image.py
-fabio-src/brukerimage.py
-fabio-src/cbfimage.py
-fabio-src/compression.py
-fabio-src/converters.py
-fabio-src/datIO.py
-fabio-src/dm3image.py
-fabio-src/edfimage.py
-fabio-src/fabioimage.py
-fabio-src/fabioutils.py
-fabio-src/file_series.py
-fabio-src/fit2dmaskimage.py
-fabio-src/fit2dspreadsheetimage.py
-fabio-src/kcdimage.py
-fabio-src/mar345image.py
-fabio-src/marccdimage.py
-fabio-src/openimage.py
-fabio-src/pilatusimage.py
-fabio-src/pnmimage.py
-fabio-src/readbytestream.py
-fabio-src/tifimage.py
-fabio-src/xsdimage.py
-src/byte_offset.c
-src/byte_offset.html
-src/byte_offset.pyx
-src/ccp4_pack.c
-src/ccp4_pack.h
-src/cf_iomodule.c
-src/columnfile.c
-src/columnfile.h
-src/mar345_IO.c
-src/mar345_IO.html
-src/mar345_IO.pyx
-src/setup.py
-src/stdint.h
-test/__init__.py
-test/benchheader.py
-test/profile_compressed.py
-test/testGEimage.py
-test/testOXDimage.py
-test/testXSDimage.py
-test/test_all.py
-test/test_all_images.py
-test/test_file_series.py
-test/test_filename_steps.py
-test/test_flat_binary.py
-test/testadscimage.py
-test/testbrukerimage.py
-test/testcbfimage.py
-test/testcompression.py
-test/testedfimage.py
-test/testfabioimage.py
-test/testfilenames.py
-test/testfit2dmaskimage.py
-test/testheadernotsingleton.py
-test/testkcdimage.py
-test/testmar345image.py
-test/testmccdimage.py
-test/testopenheader.py
-test/testopenimage.py
-test/testtifgz.py
-test/testtifimage.py
-test/utilstest.py
\ No newline at end of file
diff --git a/fabio-src/GEimage.py b/fabio/GEimage.py
similarity index 100%
rename from fabio-src/GEimage.py
rename to fabio/GEimage.py
diff --git a/fabio-src/GEimage_old.py b/fabio/GEimage_old.py
similarity index 100%
rename from fabio-src/GEimage_old.py
rename to fabio/GEimage_old.py
diff --git a/fabio-src/HiPiCimage.py b/fabio/HiPiCimage.py
similarity index 100%
rename from fabio-src/HiPiCimage.py
rename to fabio/HiPiCimage.py
diff --git a/fabio-src/OXDimage.py b/fabio/OXDimage.py
similarity index 100%
rename from fabio-src/OXDimage.py
rename to fabio/OXDimage.py
diff --git a/fabio-src/TiffIO.py b/fabio/TiffIO.py
similarity index 100%
rename from fabio-src/TiffIO.py
rename to fabio/TiffIO.py
diff --git a/fabio-src/__init__.py b/fabio/__init__.py
similarity index 82%
rename from fabio-src/__init__.py
rename to fabio/__init__.py
index 162cd9e..73d18e2 100644
--- a/fabio-src/__init__.py
+++ b/fabio/__init__.py
@@ -1,4 +1,4 @@
-version = "0.1.0"
+version = "0.1.1"
import logging
logging.basicConfig()
import fabioimage
@@ -7,4 +7,4 @@ from fabioutils import filename_object, COMPRESSORS, jump_filename, \
previous_filename, next_filename, deconstruct_filename, \
extract_filenumber, getnum, construct_filename
from openimage import openimage as open
-
+from openimage import openheader as openheader
diff --git a/fabio-src/adscimage.py b/fabio/adscimage.py
similarity index 100%
rename from fabio-src/adscimage.py
rename to fabio/adscimage.py
diff --git a/fabio-src/binaryimage.py b/fabio/binaryimage.py
similarity index 100%
rename from fabio-src/binaryimage.py
rename to fabio/binaryimage.py
diff --git a/fabio-src/bruker100image.py b/fabio/bruker100image.py
similarity index 98%
rename from fabio-src/bruker100image.py
rename to fabio/bruker100image.py
index c30233d..dcffdf7 100644
--- a/fabio-src/bruker100image.py
+++ b/fabio/bruker100image.py
@@ -9,7 +9,7 @@ except ImportError:
Image = None
from brukerimage import brukerimage
-import readbytestream
+from readbytestream import readbytestream
class bruker100image(brukerimage):
diff --git a/fabio-src/brukerimage.py b/fabio/brukerimage.py
similarity index 100%
rename from fabio-src/brukerimage.py
rename to fabio/brukerimage.py
diff --git a/fabio-src/cbfimage.py b/fabio/cbfimage.py
similarity index 98%
rename from fabio-src/cbfimage.py
rename to fabio/cbfimage.py
index 6a65d05..839989d 100644
--- a/fabio-src/cbfimage.py
+++ b/fabio/cbfimage.py
@@ -1,14 +1,14 @@
#!/usr/bin/env python
# coding: utf8
"""
-Authors: Jérôme Kieffer, ESRF
+Authors: Jérôme Kieffer, ESRF
email:jerome.kieffer at esrf.fr
Cif Binary Files images are 2D images written by the Pilatus detector and others.
-They use a modified (simplified) byte-offset algorithm.
+They use a modified (simplified) byte-offset algorithm.
-CIF is a library for manipulating Crystallographic information files and tries
-to conform to the specification of the IUCR
+CIF is a library for manipulating Crystallographic information files and tries
+to conform to the specification of the IUCR
"""
__author__ = "Jérôme Kieffer"
__contact__ = "jerome.kieffer at esrf.eu"
@@ -19,11 +19,11 @@ __version__ = ["Generated by CIF.py: Jan 2005 - April 2012",
"On-line data analysis / ISDD ", "ESRF Grenoble (France)"]
-import os, logging, struct
+import os, logging
logger = logging.getLogger("cbfimage")
import numpy
from fabioimage import fabioimage
-from compression import decByteOffet_python, decByteOffet_weave, decByteOffet_numpy, md5sum, compByteOffet_numpy
+from compression import decByteOffet_numpy, md5sum, compByteOffet_numpy
#import time
DATA_TYPES = { "signed 8-bit integer" : numpy.int8,
@@ -44,8 +44,8 @@ STARTER = "\x0c\x1a\x04\xd5"
PADDING = 512
class cbfimage(fabioimage):
- """
- Read the Cif Binary File data format
+ """
+ Read the Cif Binary File data format
"""
def __init__(self, data=None , header=None, fname=None):
"""
@@ -63,6 +63,8 @@ class cbfimage(fabioimage):
def checkData(data=None):
if data is None:
return None
+ elif numpy.issubdtype(data.dtype, int):
+ return data
else:
return data.astype(int)
@@ -70,7 +72,7 @@ class cbfimage(fabioimage):
def _readheader(self, inStream):
"""
Read in a header in some CBF format from a string representing binary stuff
-
+
@param inStream: file containing the Cif Binary part.
@type inStream: opened file.
"""
@@ -149,8 +151,8 @@ class cbfimage(fabioimage):
def _readbinary_byte_offset(self, inStream):
"""
- Read in a binary part of an x-CBF_BYTE_OFFSET compressed image
-
+ Read in a binary part of an x-CBF_BYTE_OFFSET compressed image
+
@param inStream: the binary image (without any CIF decorators)
@type inStream: python string.
@return: a linear numpy array without shape and dtype set
@@ -238,7 +240,7 @@ class cbfimage(fabioimage):
self.cif.saveCIF(fname, linesep="\r\n", binary=True)
################################################################################
-# CIF class
+# CIF class
################################################################################
class CIF(dict):
"""
@@ -412,7 +414,7 @@ class CIF(dict):
bFinished = False
while not bFinished:
idx += 1 + sText[idx + 1:].find("'")
- ##########debuging in case we arrive at the end of the text
+ ##########debuging in case we arrive at the end of the text
if idx >= len(sText) - 1:
# print sText,idx,len(sText)
lFields.append(sText[1:-1].strip())
@@ -431,7 +433,7 @@ class CIF(dict):
bFinished = False
while not bFinished:
idx += 1 + sText[idx + 1:].find('"')
- ##########debuging in case we arrive at the end of the text
+ ##########debuging in case we arrive at the end of the text
if idx >= len(sText) - 1:
# print sText,idx,len(sText)
lFields.append(sText[1:-1].strip())
@@ -525,7 +527,7 @@ class CIF(dict):
else:
#print data
- #print keys
+ #print keys
for i in range(len(data) / len(keys)):
element = {}
for j in keys:
@@ -583,7 +585,7 @@ class CIF(dict):
if "_chemical_name_common" in self:
t = self["_chemical_name_common"].split()[0]
elif _strFilename is not None:
- t = os.path.splitext(os.path.split(_strFilename.strip())[1])[0]
+ t = os.path.splitext(os.path.split(str(_strFilename).strip())[1])[0]
else:
t = ""
lstStrCif.append("data_%s" % (t))
diff --git a/fabio-src/compression.py b/fabio/compression.py
similarity index 100%
rename from fabio-src/compression.py
rename to fabio/compression.py
diff --git a/fabio-src/converters.py b/fabio/converters.py
similarity index 100%
rename from fabio-src/converters.py
rename to fabio/converters.py
diff --git a/fabio-src/datIO.py b/fabio/datIO.py
similarity index 100%
rename from fabio-src/datIO.py
rename to fabio/datIO.py
diff --git a/fabio-src/dm3image.py b/fabio/dm3image.py
similarity index 100%
rename from fabio-src/dm3image.py
rename to fabio/dm3image.py
diff --git a/fabio-src/edfimage.py b/fabio/edfimage.py
similarity index 83%
rename from fabio-src/edfimage.py
rename to fabio/edfimage.py
index 2c60e1b..2070678 100644
--- a/fabio-src/edfimage.py
+++ b/fabio/edfimage.py
@@ -12,13 +12,13 @@ Authors: Henning O. Sorensen & Erik Knudsen
email:erik.knudsen at risoe.dk
+ Jon Wright, ESRF
-
-2011-02-11: Mostly rewritten by Jérôme Kieffer (Jerome.Kieffer at esrf.eu)
+
+2011-02-11: Mostly rewritten by Jérôme Kieffer (Jerome.Kieffer at esrf.eu)
European Synchrotron Radiation Facility
Grenoble (France)
-
+2012-08-20: laisy read of data in EDF
"""
-
+from __future__ import with_statement
import os, logging, types
logger = logging.getLogger("edfimage")
import numpy
@@ -106,15 +106,15 @@ class Frame(object):
self.capsHeader[key.upper()] = key
except AttributeError:
logger.warning("Header key %s is not a string" % key)
-
- self.rawData = None
self._data = data
self.dims = []
self.dim1 = 0
self.dim2 = 0
- self.size = None
+ self.start = None # Position of start of raw data in file
+ self.size = None # size of raw data in file
+ self.file = None # opened file object with locking capabilities !!!
self.bpp = None
- self.bytecode = None
+ self._bytecode = None
if (number is not None) and isinstance(number, int):
self.iFrame = number
else:
@@ -188,13 +188,13 @@ class Frame(object):
else:
logger.debug("No Dim_3 -> it is a 2D image")
iDim = None
- if self.bytecode is None:
+ if self._bytecode is None:
if "DATATYPE" in self.capsHeader:
- self.bytecode = DATA_TYPES[self.header[self.capsHeader['DATATYPE']]]
+ self._bytecode = DATA_TYPES[self.header[self.capsHeader['DATATYPE']]]
else:
- self.bytecode = numpy.uint16
+ self._bytecode = numpy.uint16
logger.warning("Defaulting type to uint16")
- self.bpp = len(numpy.array(0, self.bytecode).tostring())
+ self.bpp = len(numpy.array(0, self._bytecode).tostring())
calcsize *= self.bpp
if (self.size is None):
self.size = calcsize
@@ -233,16 +233,23 @@ class Frame(object):
data = None
if self._data is not None:
data = self._data
- elif self.rawData is None:
+ elif self.file is None:
data = self._data
else:
- if self.bytecode is None:
+ if self._bytecode is None:
if "DATATYPE" in self.capsHeader:
- self.bytecode = DATA_TYPES[self.header[self.capsHeader["DATATYPE"]]]
+ self._bytecode = DATA_TYPES[self.header[self.capsHeader["DATATYPE"]]]
else:
- self.bytecode = numpy.uint16
+ self._bytecode = numpy.uint16
dims = self.dims[:]
dims.reverse()
+ with self.file.lock:
+ if self.file.closed:
+ logger.error("file: %s from %s is closed. Cannot read data." % (self.file, self.file.filename))
+ return
+ else:
+ self.file.seek(self.start)
+ fileData = self.file.read(self.size)
if ("COMPRESSION" in self.capsHeader):
compression = self.header[self.capsHeader["COMPRESSION"]].upper()
@@ -255,26 +262,26 @@ class Frame(object):
except ImportError, error:
logger.error("Unimplemented compression scheme: %s (%s)" % (compression, error))
else:
- myData = byte_offset.analyseCython(self.rawData, size=uncompressed_size)
- rawData = myData.astype(self.bytecode).tostring()
+ myData = byte_offset.analyseCython(fileData, size=uncompressed_size)
+ rawData = myData.astype(self._bytecode).tostring()
self.size = uncompressed_size
elif compression == "NONE":
- rawData = self.rawData
+ rawData = fileData
elif "GZIP" in compression:
- rawData = decGzip(self.rawData)
+ rawData = decGzip(fileData)
self.size = uncompressed_size
elif "BZ" in compression :
- rawData = decBzip2(self.rawData)
+ rawData = decBzip2(fileData)
self.size = uncompressed_size
elif "Z" in compression :
- rawData = decZlib(self.rawData)
+ rawData = decZlib(fileData)
self.size = uncompressed_size
else:
logger.warning("Unknown compression scheme %s" % compression)
- rawData = self.rawData
+ rawData = fileData
else:
- rawData = self.rawData
+ rawData = fileData
expected = self.size
obtained = len(rawData)
@@ -285,26 +292,32 @@ class Frame(object):
logger.info("Data stream contains trailing junk : %s > expected %s bytes" % (obtained, expected))
rawData = rawData[:expected]
if self.swap_needed():
- data = numpy.fromstring(rawData, self.bytecode).byteswap().reshape(tuple(dims))
+ data = numpy.fromstring(rawData, self._bytecode).byteswap().reshape(tuple(dims))
else:
- data = numpy.fromstring(rawData, self.bytecode).reshape(tuple(dims))
+ data = numpy.fromstring(rawData, self._bytecode).reshape(tuple(dims))
self._data = data
- self.rawData = None #no need to keep garbage in memory
- self.bytecode = data.dtype.type
+ self._bytecode = data.dtype.type
return data
def setData(self, npa=None):
"""Setter for data in edf frame"""
self._data = npa
data = property(getData, setData, "property: (edf)frame.data, uncompress the datablock when needed")
+ def getByteCode(self):
+ if self._bytecode is None:
+ self._bytecode = self.data.dtype.type
+ return self._bytecode
+ def setByteCode(self, _iVal):
+ self._bytecode = _iVal
+ bytecode = property(getByteCode, setByteCode)
def getEdfBlock(self, force_type=None, fit2dMode=False):
"""
@param force_type: type of the dataset to be enforced like "float64" or "uint16"
@type force_type: string or numpy.dtype
- @param fit2dMode: enforce compatibility with fit2d and starts countimg number of images at 1
+ @param fit2dMode: enforce compatibility with fit2d and starts countimg number of images at 1
@type fit2dMode: boolean
- @return: ascii header block
+ @return: ascii header block
@rtype: python string with the concatenation of the ascii header and the binary data block
"""
if force_type is not None:
@@ -387,7 +400,6 @@ class Frame(object):
line = strKey + " = " + strValue + " ;\n"
preciseSize += len(line)
listHeader.append(line)
-# print type(line), line
if preciseSize > approxHeaderSize:
logger.error("I expected the header block only at %s in fact it is %s" % (approxHeaderSize, preciseSize))
for idx, line in enumerate(listHeader[:]):
@@ -413,6 +425,7 @@ class edfimage(fabioimage):
def __init__(self, data=None , header=None, header_keys=None, frames=None):
self.currentframe = 0
+ self.filesize = None
try:
dim = len(data.shape)
except Exception, error: #IGNORE:W0703
@@ -456,9 +469,9 @@ class edfimage(fabioimage):
def _readHeaderBlock(infile):
"""
Read in a header in some EDF format from an already open file
-
+
@param infile: file object open in read mode
- @return: string (or None if no header was found.
+ @return: string (or None if no header was found.
"""
block = infile.read(BLOCKSIZE)
@@ -486,11 +499,7 @@ class edfimage(fabioimage):
logger.error("Unable to locate start of the binary section")
offset = None
if offset is not None:
- try:
- infile.seek(offset, os.SEEK_CUR)
- except TypeError: #JK20110407 bugfix specific to MacOSX
- pos = infile.tell()
- infile.seek(pos + offset)
+ infile.seek(offset, os.SEEK_CUR)
return block[start:end]
@@ -501,7 +510,6 @@ class edfimage(fabioimage):
@type infile: file object open in read mode
"""
self.__frames = []
-
bContinue = True
while bContinue:
block = self._readHeaderBlock(infile)
@@ -509,11 +517,22 @@ class edfimage(fabioimage):
bContinue = False
break
frame = Frame(number=self.nframes)
- self.__frames.append(frame)
size = frame.parseheader(block)
- frame.rawData = infile.read(size)
- if len(frame.rawData) != size:
- logger.warning("Non complete datablock: got %s, expected %s" % (len(frame.rawData), size))
+ frame.file = infile
+ frame.start = infile.tell()
+ frame.size = size
+ self.__frames += [frame]
+ try:
+ infile.seek(size, os.SEEK_CUR)
+ except Exception, error:
+ logger.warning("infile is %s" % infile)
+ logger.warning("Position is %s" % infile.tell())
+ logger.warning("size is %s" % size)
+ logger.error("It seams this error occurs under windows when reading a (large-) file over network: %s ", error)
+ raise Exception(error)
+
+ if frame.start + size > infile.size:
+ logger.warning("Non complete datablock: got %s, expected %s" % (infile.size - frame.start, size))
bContinue = False
break
@@ -524,7 +543,6 @@ class edfimage(fabioimage):
missing.append(item)
if len(missing) > 0:
logger.info("EDF file %s frame %i misses mandatory keys: %s " % (self.filename, i, " ".join(missing)))
-
self.currentframe = 0
@@ -539,9 +557,7 @@ class edfimage(fabioimage):
infile = self._open(fname, "rb")
self._readheader(infile)
if frame is None:
- if self.data is None:
- self.data = self.unpack()
- # self.bytecode = self.data.dtype.type
+ pass
elif frame < self.nframes:
self = self.getframe(frame)
else:
@@ -565,7 +581,6 @@ class edfimage(fabioimage):
else:
return False
-
def unpack(self):
"""
Unpack a binary blob according to the specification given in the header and return the dataset
@@ -620,10 +635,10 @@ class edfimage(fabioimage):
Try to write a file
check we can write zipped also
mimics that fabian was writing uint16 (we sometimes want floats)
-
+
@param force_type: can be numpy.uint16 or simply "float"
@return: None
-
+
"""
outfile = self._open(fname, mode="wb")
@@ -636,7 +651,7 @@ class edfimage(fabioimage):
def appendFrame(self, frame=None, data=None, header=None):
"""
Method used add a frame to an EDF file
- @param frame: frame to append to edf image
+ @param frame: frame to append to edf image
@type frame: instance of Frame
@return: None
"""
@@ -658,9 +673,68 @@ class edfimage(fabioimage):
else:
self.__frames.pop(frameNb)
+ def fastReadData(self, filename=None):
+ """
+ This is a special method that will read and return the data from another file ...
+ The aim is performances, ... but only supports uncompressed files.
+
+ @return: data from another file using positions from current edfimage
+ """
+ if (filename is None) or not os.path.isfile(filename):
+ raise RuntimeError("edfimage.fastReadData is only valid with another file: %s does not exist" % (filename))
+ data = None
+ frame = self.__frames[self.currentframe]
+ with open(filename, "rb")as f:
+ f.seek(frame.start)
+ raw = f.read(frame.size)
+ try:
+ data = numpy.fromstring(raw, dtype=self.bytecode)
+ data.shape = self.data.shape
+ except Exception, err :
+ logger.error("unable to convert file content to numpy array: %s", err)
+ return data
+
+ def fastReadROI(self, filename, coords=None):
+ """
+ Method reading Region of Interest of another file based on metadata available in current edfimage.
+ The aim is performances, ... but only supports uncompressed files.
+
+ @return: ROI-data from another file using positions from current edfimage
+ @rtype: numpy 2darray
+ """
+ if (filename is None) or not os.path.isfile(filename):
+ raise RuntimeError("edfimage.fastReadData is only valid with another file: %s does not exist" % (filename))
+ data = None
+ frame = self.__frames[self.currentframe]
+
+ if len(coords) == 4:
+ slice1 = self.make_slice(coords)
+ elif len(coords) == 2 and isinstance(coords[0], slice) and \
+ isinstance(coords[1], slice):
+ slice1 = coords
+ else:
+ logger.warning('readROI: Unable to understand Region Of Interest: got %s', coords)
+ return
+ d1 = self.data.shape[-1]
+ start0 = slice1[0].start
+ start1 = slice1[1].start
+ slice2 = (slice(0, slice1[0].stop - start0, slice1[0].step),
+ slice(0, slice1[1].stop - start1, slice1[1].step))
+ start = frame.start + self.bpp * (d1 * start0 + start1)
+ size = self.bpp * ((slice2[0].stop) * d1)
+ with open(filename, "rb")as f:
+ f.seek(start)
+ raw = f.read(size)
+ try:
+ data = numpy.fromstring(raw, dtype=self.bytecode)
+ data.shape = -1, d1
+ except Exception, err :
+ logger.error("unable to convert file content to numpy array: %s", err)
+ return data[slice2]
+
################################################################################
-# Properties definition for header, data, header_keys and capsHeader
+# Properties definition for header, data, header_keys and capsHeader
################################################################################
def getNbFrames(self):
"""
@@ -669,7 +743,7 @@ class edfimage(fabioimage):
return len(self.__frames)
def setNbFrames(self, val):
"""
- Setter for number of frames ... should do nothing. Here just to avoid bugs
+ Setter for number of frames ... should do nothing. Here just to avoid bugs
"""
if val != len(self.__frames):
logger.warning("trying to set the number of frames ")
@@ -727,7 +801,7 @@ class edfimage(fabioimage):
def getData(self):
"""
getter for edf Data
- @return: data for current frame
+ @return: data for current frame
@rtype: numpy.ndarray
"""
npaData = None
@@ -740,13 +814,12 @@ class edfimage(fabioimage):
if self.currentframe < len(self.__frames):
self.__frames.append(Frame())
npaData = self.__frames[self.currentframe].data
-# logger.warning("Data of %s, currentframe=%s is type %s" % (id(self), self.currentframe, type(npaData)))
return npaData
def setData(self, _data):
"""
Enforces the propagation of the data to the list of frames
- @param _data: numpy array representing data
+ @param _data: numpy array representing data
"""
try:
self.__frames[self.currentframe].data = _data
@@ -764,15 +837,15 @@ class edfimage(fabioimage):
def getCapsHeader(self):
"""
- getter for edf headers keys in upper case
- @return: data for current frame
+ getter for edf headers keys in upper case
+ @return: data for current frame
@rtype: dict
"""
return self.__frames[self.currentframe].capsHeader
def setCapsHeader(self, _data):
"""
Enforces the propagation of the header_keys to the list of frames
- @param _data: numpy array representing data
+ @param _data: numpy array representing data
"""
self.__frames[self.currentframe].capsHeader = _data
def delCapsHeader(self):
@@ -821,7 +894,6 @@ class edfimage(fabioimage):
if self.currentframe < len(self.__frames):
self.__frames.append(Frame())
self.__frames[self.currentframe].bytecode = _iVal
-
bytecode = property(getByteCode, setByteCode)
def getBpp(self):
return self.__frames[self.currentframe].bpp
diff --git a/fabio-src/fabioimage.py b/fabio/fabioimage.py
similarity index 94%
rename from fabio-src/fabioimage.py
rename to fabio/fabioimage.py
index 3a5b097..aac7c74 100644
--- a/fabio-src/fabioimage.py
+++ b/fabio/fabioimage.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/env python
"""
@@ -8,11 +8,12 @@ Authors: Henning O. Sorensen & Erik Knudsen
Frederiksborgvej 399
DK-4000 Roskilde
email:erik.knudsen at risoe.dk
-
+
and Jon Wright, Jerome Kieffer: ESRF
"""
-import os, gzip, bz2, StringIO, types, logging, sys
+from __future__ import with_statement
+import os, types, logging, sys, tempfile
logger = logging.getLogger("fabioimage")
import numpy
try:
@@ -23,22 +24,6 @@ except ImportError:
import fabioutils, converters
-class fabioStream(StringIO.StringIO):
- """
- just an interface providing the name and mode property to a StringIO
-
- BugFix for MacOSX
- """
- def __init__(self, data, fname=None, mode="r"):
- StringIO.StringIO.__init__(self, data)
- self.closed = False
- if fname == None:
- self.name = "fabioStream"
- else:
- self.name = fname
- self.mode = mode
-
-
class fabioimage(object):
"""
A common object for images in fable
@@ -101,7 +86,7 @@ class fabioimage(object):
def getclassname(self):
"""
Retrieves the name of the class
- @return: the name of the class
+ @return: the name of the class
"""
if self._classname is None:
self._classname = str(self.__class__).replace("<class '", "").replace("'>", "").split(".")[-1]
@@ -156,7 +141,7 @@ class fabioimage(object):
mode1 = mode2[0]
else:
raise Exception("Unknown numpy type " + str(self.data.dtype.type))
- #
+ #
# hack for byteswapping for PIL in MacOS
testval = numpy.array((1, 0), numpy.uint8).view(numpy.uint16)[0]
if testval == 1:
@@ -194,7 +179,7 @@ class fabioimage(object):
def make_slice(self, coords):
"""
- Convert a len(4) set of coords into a len(2)
+ Convert a len(4) set of coords into a len(2)
tuple (pair) of slice objects
the latter are immutable, meaning the roi can be cached
"""
@@ -205,9 +190,9 @@ class fabioimage(object):
coords[0:3:2] = [coords[2], coords[0]]
if coords[1] > coords[3]:
coords[1:4:2] = [coords[3], coords[1]]
- #in fabian: normally coordinates are given as (x,y) whereas
- # a matrix is given as row,col
- # also the (for whichever reason) the image is flipped upside
+ #in fabian: normally coordinates are given as (x,y) whereas
+ # a matrix is given as row,col
+ # also the (for whichever reason) the image is flipped upside
# down wrt to the matrix hence these tranformations
fixme = (self.dim2 - coords[3] - 1,
coords[0] ,
@@ -218,8 +203,8 @@ class fabioimage(object):
def integrate_area(self, coords):
- """
- Sums up a region of interest
+ """
+ Sums up a region of interest
if len(coords) == 4 -> convert coords to slices
if len(coords) == 2 -> use as slices
floor -> ? removed as unused in the function.
@@ -274,8 +259,8 @@ class fabioimage(object):
self.roi = self.slice = self.area_sum = None
def rebin(self, x_rebin_fact, y_rebin_fact, keep_I=True):
- """
- Rebin the data and adjust dims
+ """
+ Rebin the data and adjust dims
@param x_rebin_fact: x binning factor
@param y_rebin_fact: y binning factor
@param keep_I: shall the signal increase ?
@@ -283,7 +268,7 @@ class fabioimage(object):
@type y_rebin_fact: int
@type keep_I: boolean
-
+
"""
if self.data == None:
raise Exception('Please read in the file you wish to rebin first')
@@ -369,7 +354,7 @@ class fabioimage(object):
This implementation is the trivial one, just doing read and crop
"""
self.read(filename, frame)
- if len(coord) == 4:
+ if len(coords) == 4:
self.slice = self.make_slice(coords)
elif len(coords) == 2 and isinstance(coords[0], slice) and \
isinstance(coords[1], slice):
@@ -383,8 +368,8 @@ class fabioimage(object):
def _open(self, fname, mode="rb"):
"""
Try to handle compressed files, streams, shared memory etc
- Return an object which can be used for "read" and "write"
- ... FIXME - what about seek ?
+ Return an object which can be used for "read" and "write"
+ ... FIXME - what about seek ?
"""
fileObject = None
self.filename = fname
@@ -396,12 +381,12 @@ class fabioimage(object):
if os.path.splitext(fname)[1] == ".gz":
fileObject = self._compressed_stream(fname,
fabioutils.COMPRESSORS['.gz'],
- gzip.GzipFile,
+ fabioutils.GzipFile,
mode)
elif os.path.splitext(fname)[1] == '.bz2':
fileObject = self._compressed_stream(fname,
fabioutils.COMPRESSORS['.bz2'],
- bz2.BZ2File,
+ fabioutils.BZ2File,
mode)
#
# Here we return the file even though it may be bzipped or gzipped
@@ -409,7 +394,7 @@ class fabioimage(object):
#
# FIXME - should we fix that or complain about the daft naming?
else:
- fileObject = open(fname, mode)
+ fileObject = fabioutils.File(fname, mode)
if "name" not in dir(fileObject):
fileObject.name = fname
@@ -421,7 +406,7 @@ class fabioimage(object):
python_uncompress,
mode='rb'):
"""
- Try to transparently handle gzip / bzip without always getting python
+ Try to transparently handle gzip / bzip without always getting python
performance
"""
# assert that python modules are always OK based on performance benchmark
@@ -429,13 +414,17 @@ class fabioimage(object):
fobj = None
if self._need_a_real_file and mode[0] == "r":
fo = python_uncompress(fname, mode)
- fobj = os.tmpfile()
+# fobj = os.tmpfile()
+ #problem when not administrator under certain flavors of windows
+ tmpfd, tmpfn = tempfile.mkstemp()
+ os.close(tmpfd)
+ fobj = fabioutils.File(tmpfn, "w+b")
fobj.write(fo.read())
fo.close()
fobj.seek(0)
elif self._need_a_seek_to_read and mode[0] == "r":
fo = python_uncompress(fname, mode)
- fobj = fabioStream(fo.read(), fname, mode)
+ fobj = fabioutils.StringIO(fo.read(), fname, mode)
else:
fobj = python_uncompress(fname, mode)
return fobj
@@ -443,7 +432,7 @@ class fabioimage(object):
def convert(self, dest):
"""
Convert a fabioimage object into another fabioimage object (with possible conversions)
- @param dest: destination type "EDF", "edfimage" or the class itself
+ @param dest: destination type "EDF", "edfimage" or the class itself
"""
if type(dest) in types.StringTypes:
dest = dest.lower()
@@ -537,7 +526,7 @@ def test():
clean()
-
+ import gzip, bz2
gzip.open("testfile.gz", "wb").write("{ hello }")
fout = obj._open("testfile.gz")
readin = fout.read()
diff --git a/fabio/fabioutils.py b/fabio/fabioutils.py
new file mode 100644
index 0000000..2cb8543
--- /dev/null
+++ b/fabio/fabioutils.py
@@ -0,0 +1,497 @@
+#!/usr/bin/env python
+#coding: utf8
+
+"""
+General purpose utilities functions for fabio
+"""
+from __future__ import with_statement
+import re, os, logging, threading
+import StringIO as stringIO
+logger = logging.getLogger("fabioutils")
+from compression import bz2, gzip
+
+
+FILETYPES = {
+ # extension NNNimage fabioclass
+ # type consistency - always use a list if one case is
+ 'edf' : ['edf'],
+ 'cor' : ['edf'],
+ 'pnm' : ['pnm'],
+ 'pgm' : ['pnm'],
+ 'pbm' : ['pnm'],
+ 'tif' : ['tif'],
+ 'tiff' : ['tif'],
+ 'img' : ['adsc', 'OXD', 'HiPiC'],
+ 'mccd' : ['marccd'],
+ 'mar2300': ['mar345'],
+ 'sfrm' : ['bruker100'],
+ 'msk' : ['fit2dmask'],
+ 'spr' : ['fit2dspreadsheet'],
+ 'dm3' : ['dm3'],
+ 'kcd' : ['kcd'],
+ 'cbf' : ['cbf'],
+ 'xml' : ["xsd"],
+ 'xsd' : ["xsd"],
+ }
+
+# Add bzipped and gzipped
+for key in FILETYPES.keys():
+ FILETYPES[key + ".bz2"] = FILETYPES[key]
+ FILETYPES[key + ".gz"] = FILETYPES[key]
+
+
+# Compressors
+
+COMPRESSORS = {}
+
+
+dictAscii = {None:[chr(i) for i in range(32, 127)],
+ }
+
+try:
+ lines = os.popen("gzip -h 2>&1").read()
+ # Looking for "usage"
+ if "sage" in lines:
+ COMPRESSORS['.gz'] = 'gzip -dc '
+ else:
+ COMPRESSORS['.gz'] = None
+except:
+ COMPRESSORS['.gz'] = None
+
+try:
+ lines = os.popen("bzip2 -h 2>&1").read()
+ # Looking for "usage"
+ if "sage" in lines:
+ COMPRESSORS['.bz2'] = 'bzip2 -dc '
+ else:
+ COMPRESSORS['.bz2'] = None
+except:
+ COMPRESSORS['.bz2'] = None
+
+
+def getnum(name):
+ """
+ # try to figure out a file number
+ # guess it starts at the back
+ """
+ stem , num, post_num = numstem(name)
+ try:
+ return int(num)
+ except ValueError:
+ return None
+
+class filename_object:
+ """
+ The 'meaning' of a filename
+ """
+ def __init__(self, stem,
+ num=None,
+ directory=None,
+ format=None,
+ extension=None,
+ postnum=None,
+ digits=4):
+ self.stem = stem
+ self.num = num
+ self.format = format
+ self.extension = extension
+ self.digits = digits
+ self.postnum = postnum
+ self.directory = directory
+
+ def str(self):
+ """ Return a string representation """
+ fmt = "stem %s, num %s format %s extension %s " + \
+ "postnum = %s digits %s dir %s"
+ return fmt % tuple([str(x) for x in [
+ self.stem ,
+ self.num ,
+ self.format ,
+ self.extension ,
+ self.postnum ,
+ self.digits ,
+ self.directory ] ])
+
+
+ def tostring(self):
+ """
+ convert yourself to a string
+ """
+ name = self.stem
+ if self.digits is not None and self.num is not None:
+ fmt = "%0" + str(self.digits) + "d"
+ name += fmt % self.num
+ if self.postnum is not None:
+ name += self.postnum
+ if self.extension is not None:
+ name += self.extension
+ if self.directory is not None:
+ name = os.path.join(self.directory, name)
+ return name
+
+
+def numstem(name):
+ """ cant see how to do without reversing strings
+ Match 1 or more digits going backwards from the end of the string
+ """
+ reg = re.compile(r"^(.*?)(-?[0-9]{0,9})(\D*)$")
+ #reg = re.compile("""(\D*)(\d\d*)(\w*)""")
+ try:
+ res = reg.match(name).groups()
+ #res = reg.match(name[::-1]).groups()
+ #return [ r[::-1] for r in res[::-1]]
+ if len(res[0]) == len(res[1]) == 0: # Hack for file without number
+ return [res[2], '', '']
+ return [ r for r in res]
+ except AttributeError: # no digits found
+ return [name, "", ""]
+
+def deconstruct_filename(filename):
+ """
+ Break up a filename to get image type and number
+ """
+ direc , name = os.path.split(filename)
+ if len(direc) == 0:
+ direc = None
+ parts = os.path.split(name)[-1].split(".")
+ # loop back from end
+ compressed = False
+ extn = ""
+ postnum = ""
+ ndigit = 4
+ if parts[-1] in ["gz", "bz2"]:
+ extn = "." + parts[-1]
+ parts = parts[:-1]
+ compressed = True
+ if parts[-1] in FILETYPES.keys():
+ typ = FILETYPES[parts[-1]]
+ extn = "." + parts[-1] + extn
+ try:
+ stem , numstring, postnum = numstem(".".join(parts[:-1]))
+ num = int(numstring)
+ ndigit = len(numstring)
+ except:
+ # There is no number - hence make num be None, not 0
+ num = None
+ stem = "".join(parts[:-1])
+ else:
+ # Probably two type left
+ if len(parts) == 1:
+ # Probably GE format stem_numb
+ parts2 = parts[0].split("_")
+ try:
+ num = int(parts2[-1])
+ ndigit = len(parts2[-1])
+ typ = ['GE']
+ stem = "_".join(parts2[:-1]) + "_"
+ except:
+ pass
+ else:
+ try:
+ num = int(parts[-1])
+ ndigit = len(parts[-1])
+ typ = ['bruker']
+ stem = ".".join(parts[:-1]) + "."
+ except:
+ typ = None
+ extn = "." + parts[-1] + extn
+ try:
+ stem , numstring, postnum = numstem(".".join(parts[:-1]))
+ num = int(numstring)
+ ndigit = len(numstring)
+ except:
+ raise
+ # raise Exception("Cannot decode "+filename)
+ obj = filename_object(stem,
+ num=num,
+ directory=direc,
+ format=typ,
+ extension=extn,
+ postnum=postnum,
+ digits=ndigit)
+ return obj
+
+def construct_filename(filename, frame):
+ "Try to construct the filename for a given frame"
+ fo = deconstruct_filename(filename)
+ fo.num = frame
+ return fo.tostring()
+
+def next_filename(name, padding=True):
+ """ increment number """
+ obj = deconstruct_filename(name)
+ obj.num += 1
+ if not padding:
+ obj.digits = 0
+ return obj.tostring()
+
+def previous_filename(name, padding=True):
+ """ decrement number """
+ obj = deconstruct_filename(name)
+ obj.num -= 1
+ if not padding:
+ obj.digits = 0
+ return obj.tostring()
+
+def jump_filename(name, num, padding=True):
+ """ jump to number """
+ obj = deconstruct_filename(name)
+ obj.num = num
+ if not padding:
+ obj.digits = 0
+ return obj.tostring()
+
+
+def extract_filenumber(name):
+ """ extract file number """
+ obj = deconstruct_filename(name)
+ return obj.num
+
+def isAscii(name, listExcluded=None):
+ """
+ @param name: string to check
+ @param listExcluded: list of char or string excluded.
+ @return: True of False whether name is pure ascii or not
+ """
+ isascii = None
+ try:
+ name.decode("ascii")
+ except UnicodeDecodeError:
+ isascii = False
+ else:
+ if listExcluded:
+ isascii = not(any(bad in name for bad in listExcluded))
+ else:
+ isascii = True
+ return isascii
+
+def toAscii(name, excluded=None):
+ """
+ @param name: string to check
+ @param excluded: tuple of char or string excluded (not list: they are mutable).
+ @return: the name with all non valid char removed
+ """
+ if excluded not in dictAscii:
+ ascii = dictAscii[None][:]
+ for i in excluded:
+ if i in ascii:
+ ascii.remove(i)
+ else:
+ logger.error("toAscii: % not in ascii table" % i)
+ dictAscii[excluded] = ascii
+ else:
+ ascii = dictAscii[excluded]
+ out = [i for i in str(name) if i in ascii]
+ return "".join(out)
+
+class StringIO(stringIO.StringIO):
+ """
+ just an interface providing the name and mode property to a StringIO
+
+ BugFix for MacOSX mainly
+ """
+ def __init__(self, data, fname=None, mode="r"):
+ stringIO.StringIO.__init__(self, data)
+ self.closed = False
+ if fname == None:
+ self.name = "fabioStream"
+ else:
+ self.name = fname
+ self.mode = mode
+ self.lock = threading.Lock()
+ self._size = None
+ def getSize(self):
+ if self._size is None:
+ logger.debug("Measuring size of %s" % self.name)
+ with self.lock:
+ pos = self.tell()
+ self.seek(0, os.SEEK_END)
+ self._size = self.tell()
+ self.seek(pos)
+ return self._size
+ size = property(getSize)
+
+
+# def seek(self, offset, whence=os.SEEK_SET):
+# """
+# Move to new file position.
+#
+# Argument offset is a byte count. Optional argument whence defaults to
+# 0 (offset from start of file, offset should be >= 0); other values are 1
+# (move relative to current position, positive or negative), and 2 (move
+# relative to end of file, usually negative, although many platforms allow
+# seeking beyond the end of a file). If the file is opened in text mode,
+# only offsets returned by tell() are legal. Use of other offsets causes
+# undefined behavior.
+#
+# This is a wrapper for seek to ensure compatibility with old MacOSX python 2.5
+# """
+# try:
+# StringIO.StringIO.seek(self, offset, whence)
+# except TypeError: #JK20110407 bugfix specific to MacOSX
+# if whence == os.SEEK_SET:
+# StringIO.StringIO.seek(self, offset)
+# elif whence == os.SEEK_CUR:
+# StringIO.StringIO.seek(self, offset + self.tell())
+# elif whence == os.SEEK_END:
+#NEED LOCKING
+# StringIO.StringIO.seek(self, -1)
+# StringIO.StringIO.seek(self, offset + self.tell())
+
+
+
+
+class File(file):
+ """
+ wrapper for "file" with locking
+ """
+ def __init__(self, name, mode="rb", buffering=0):
+ """file(name[, mode[, buffering]]) -> file object
+
+ Open a file. The mode can be 'r', 'w' or 'a' for reading (default),
+ writing or appending. The file will be created if it doesn't exist
+ when opened for writing or appending; it will be truncated when
+ opened for writing. Add a 'b' to the mode for binary files.
+ Add a '+' to the mode to allow simultaneous reading and writing.
+ If the buffering argument is given, 0 means unbuffered, 1 means line
+ buffered, and larger numbers specify the buffer size. The preferred way
+ to open a file is with the builtin open() function.
+ Add a 'U' to mode to open the file for input with universal newline
+ support. Any line ending in the input file will be seen as a '\n'
+ in Python. Also, a file so opened gains the attribute 'newlines';
+ the value for this attribute is one of None (no newline read yet),
+ '\r', '\n', '\r\n' or a tuple containing all the newline types seen.
+
+ 'U' cannot be combined with 'w' or '+' mode.
+ """
+ file.__init__(self, name, mode, buffering)
+ self.lock = threading.Lock()
+ self._size = None
+ def getSize(self):
+ if self._size is None:
+ logger.debug("Measuring size of %s" % self.name)
+ with self.lock:
+ pos = self.tell()
+ self.seek(0, os.SEEK_END)
+ self._size = self.tell()
+ self.seek(pos)
+ return self._size
+ size = property(getSize)
+
+class UnknownCompressedFile(File):
+ """
+ wrapper for "File" with locking
+ """
+ def __init__(self, name, mode="rb", buffering=0):
+ logger.warning("No decompressor found for this type of file (are gzip anf bz2 installed ???")
+ File.__init__(self, name, mode, buffering)
+
+if gzip is None:
+ GzipFile = UnknownCompressedFile
+else:
+ class GzipFile(gzip.GzipFile):
+ """
+ Just a wrapper forgzip.GzipFile providing the correct seek capabilities for python 2.5
+ """
+ def __init__(self, filename=None, mode=None, compresslevel=9, fileobj=None):
+ """
+ Wrapper with locking for constructor for the GzipFile class.
+
+ At least one of fileobj and filename must be given a
+ non-trivial value.
+
+ The new class instance is based on fileobj, which can be a regular
+ file, a StringIO object, or any other object which simulates a file.
+ It defaults to None, in which case filename is opened to provide
+ a file object.
+
+ When fileobj is not None, the filename argument is only used to be
+ included in the gzip file header, which may includes the original
+ filename of the uncompressed file. It defaults to the filename of
+ fileobj, if discernible; otherwise, it defaults to the empty string,
+ and in this case the original filename is not included in the header.
+
+ The mode argument can be any of 'r', 'rb', 'a', 'ab', 'w', or 'wb',
+ depending on whether the file will be read or written. The default
+ is the mode of fileobj if discernible; otherwise, the default is 'rb'.
+ Be aware that only the 'rb', 'ab', and 'wb' values should be used
+ for cross-platform portability.
+
+ The compresslevel argument is an integer from 1 to 9 controlling the
+ level of compression; 1 is fastest and produces the least compression,
+ and 9 is slowest and produces the most compression. The default is 9.
+ """
+ gzip.GzipFile.__init__(self, filename, mode, compresslevel, fileobj)
+ self.lock = threading.Lock()
+ self._size = None
+ self.closed = False
+ def getSize(self):
+ if self._size is None:
+ logger.debug("Measuring size of %s" % self.name)
+ with self.lock:
+ pos = self.tell()
+ all = self.read()
+ self._size = self.tell()
+ self.seek(pos)
+ return self._size
+ size = property(getSize)
+
+ def seek(self, offset, whence=os.SEEK_SET):
+ """
+ Move to new file position.
+
+ Argument offset is a byte count. Optional argument whence defaults to
+ 0 (offset from start of file, offset should be >= 0); other values are 1
+ (move relative to current position, positive or negative), and 2 (move
+ relative to end of file, usually negative, although many platforms allow
+ seeking beyond the end of a file). If the file is opened in text mode,
+ only offsets returned by tell() are legal. Use of other offsets causes
+ undefined behavior.
+
+ This is a wrapper for seek to ensure compatibility with old python 2.5
+ """
+ if whence == os.SEEK_SET:
+ gzip.GzipFile.seek(self, offset)
+ elif whence == os.SEEK_CUR:
+ gzip.GzipFile.seek(self, offset + self.tell())
+ elif whence == os.SEEK_END:
+ gzip.GzipFile.seek(self, -1)
+ gzip.GzipFile.seek(self, offset + self.tell())
+ def close(self):
+ self.closed = True
+ gzip.GzipFile.close(self)
+if bz2 is None:
+ BZ2File = UnknownCompressedFile
+else:
+ class BZ2File(bz2.BZ2File):
+ "Wrapper with lock"
+ def __init__(self, name , mode='r', buffering=0, compresslevel=9):
+ """
+ BZ2File(name [, mode='r', buffering=0, compresslevel=9]) -> file object
+
+ Open a bz2 file. The mode can be 'r' or 'w', for reading (default) or
+ writing. When opened for writing, the file will be created if it doesn't
+ exist, and truncated otherwise. If the buffering argument is given, 0 means
+ unbuffered, and larger numbers specify the buffer size. If compresslevel
+ is given, must be a number between 1 and 9.
+
+ Add a 'U' to mode to open the file for input with universal newline
+ support. Any line ending in the input file will be seen as a '\n' in
+ Python. Also, a file so opened gains the attribute 'newlines'; the value
+ for this attribute is one of None (no newline read yet), '\r', '\n',
+ '\r\n' or a tuple containing all the newline types seen. Universal
+ newlines are available only when reading.
+ """
+ bz2.BZ2File.__init__(self, name , mode, buffering, compresslevel)
+ self.lock = threading.Lock()
+ self._size = None
+ def getSize(self):
+ if self._size is None:
+ logger.debug("Measuring size of %s" % self.name)
+ with self.lock:
+ pos = self.tell()
+ all = self.read()
+ self._size = self.tell()
+ self.seek(pos)
+ return self._size
+ size = property(getSize)
diff --git a/fabio-src/file_series.py b/fabio/file_series.py
similarity index 100%
rename from fabio-src/file_series.py
rename to fabio/file_series.py
diff --git a/fabio-src/fit2dmaskimage.py b/fabio/fit2dmaskimage.py
similarity index 100%
rename from fabio-src/fit2dmaskimage.py
rename to fabio/fit2dmaskimage.py
diff --git a/fabio-src/fit2dspreadsheetimage.py b/fabio/fit2dspreadsheetimage.py
similarity index 100%
rename from fabio-src/fit2dspreadsheetimage.py
rename to fabio/fit2dspreadsheetimage.py
diff --git a/fabio-src/kcdimage.py b/fabio/kcdimage.py
similarity index 100%
rename from fabio-src/kcdimage.py
rename to fabio/kcdimage.py
diff --git a/fabio-src/mar345image.py b/fabio/mar345image.py
similarity index 100%
rename from fabio-src/mar345image.py
rename to fabio/mar345image.py
diff --git a/fabio-src/marccdimage.py b/fabio/marccdimage.py
similarity index 100%
rename from fabio-src/marccdimage.py
rename to fabio/marccdimage.py
diff --git a/fabio-src/openimage.py b/fabio/openimage.py
similarity index 100%
rename from fabio-src/openimage.py
rename to fabio/openimage.py
diff --git a/fabio-src/pilatusimage.py b/fabio/pilatusimage.py
similarity index 100%
rename from fabio-src/pilatusimage.py
rename to fabio/pilatusimage.py
diff --git a/fabio-src/pnmimage.py b/fabio/pnmimage.py
similarity index 100%
rename from fabio-src/pnmimage.py
rename to fabio/pnmimage.py
diff --git a/fabio-src/readbytestream.py b/fabio/readbytestream.py
similarity index 100%
rename from fabio-src/readbytestream.py
rename to fabio/readbytestream.py
diff --git a/fabio-src/tifimage.py b/fabio/tifimage.py
similarity index 100%
rename from fabio-src/tifimage.py
rename to fabio/tifimage.py
diff --git a/fabio-src/xsdimage.py b/fabio/xsdimage.py
similarity index 100%
rename from fabio-src/xsdimage.py
rename to fabio/xsdimage.py
diff --git a/setup.py b/setup.py
index d18c87a..ab1b940 100644
--- a/setup.py
+++ b/setup.py
@@ -25,10 +25,11 @@ mar345_backend = Extension('mar345_IO',
include_dirs=get_numpy_include_dirs(),
sources=['src/mar345_IO.c',
'src/ccp4_pack.c',
+# 'src/pack_c.c',
])
version = [eval(l.split("=")[1])
- for l in open(op.join(op.dirname(op.abspath(__file__)), "fabio-src", "__init__.py"))
+ for l in open(op.join(op.dirname(op.abspath(__file__)), "fabio", "__init__.py"))
if l.strip().startswith("version")][0]
@@ -43,6 +44,6 @@ setup(name='fabio',
ext_package="fabio",
ext_modules=[mar345_backend, cf_backend, byteOffset_backend],
packages=["fabio"],
- package_dir={"fabio": "fabio-src" },
+ package_dir={"fabio": "fabio" },
test_suite="test"
)
diff --git a/src/pack_c.c b/src/pack_c.c
new file mode 100644
index 0000000..fdf9f15
--- /dev/null
+++ b/src/pack_c.c
@@ -0,0 +1,1521 @@
+/*
+ pack_c.c: (de)compress diffraction image files
+ Copyright (C) 1995 Jan P Abrahams
+
+ This library is free software: you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public License
+ version 3, modified in accordance with the provisions of the
+ license to address the requirements of UK law.
+
+ You should have received a copy of the modified GNU Lesser General
+ Public License along with this library. If not, copies may be
+ downloaded from http://www.ccp4.ac.uk/ccp4license.php
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Lesser General Public License for more details.
+*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include "pack_c.h"
+
+
+/* pack_c.c, version 2 (backwards compatible with earlier versions)...
+ JPA, 26 June 1995
+ jpa at mrc-lmb.cam.ac.uk
+
+ This file contains functions capable of compressing and decompressing
+ images. It is especially suited for X-ray diffraction patterns, or other
+ image formats in which orthogonal pixels contain "grey-levels" and
+ vary smoothly accross the image. Clean images measured by a MAR-research
+ image plate scanner containing two bytes per pixel can be compressed by
+ a factor of 3.5 to 4.5 .
+
+ Since the images are encoded in a byte-stream, there should be no problem
+ concerening big- or little ended machines: both will produce an identical
+ packed image.
+
+ Compression is achieved by first calculating the differences between every
+ pixel and the truncated value of four of its neighbours. For example:
+ the difference for a pixel at img[x, y] is:
+
+ img[x, y] - (int) (img[x-1, y-1] +
+ img[x-1, y] +
+ img[x-1, y+1] +
+ img[x, y-1]) / 4
+
+ After calculating the differences, they are encoded in a packed array. A
+ packed array consists of consequitive chunks which have the following format:
+ - Three bits containing the logarithm base 2 of the number of pixels encoded
+ in the chunk.
+ - Three bits defining the number of bits used to encode one element of the
+ chunk. The value of these three bits is used as index in a lookup table
+ to get the actual number of bits of the elements of the chunk.
+ Note: in version 2, there are four bits in this position!! This allows
+ more efficient packing of synchrotron data! The routines in this
+ sourcefile are backwards compatible.
+ JPA, 26 June 1995
+ - The truncated pixel differences.
+
+ To compress an image, call pack_wordimage_c() or pack_longimage_c(). These
+ will append the packed image to any header information already written to
+ disk (take care that the file containing this information is closed before
+ calling). To decompress an image, call readpack_word_c() or
+ readpack_long_c(). These functions will find the start of the packed image
+ themselves, irrespective of the header format.
+
+ In order to provide an interface to fortran programs, the functions
+ pack_wordimage_f(), pack_longimage_f(), read_wordimage_f() and
+ read_long_image_f() are provided. They are called by the fortran subroutines
+ PACK_WORDIMAGE, PACK_LONGIMAGE, READPACK_WORD, and READPACK_LONG, which
+ can be found in the accompanying sourcefile "pack_f.f".
+
+
+ Jan Pieter Abrahams, 6 Jan 1993 */
+
+
+
+
+/******************************************************************************/
+
+
+/* Some fortran compilers require c-functions to end with an underscore. */
+
+#if defined(_AIX) || defined (___AIX) || defined(__hpux)
+/* no underscore by default */
+#else
+# if defined (VMS) || defined (vms) || defined (__vms) || defined (__VMS)
+# define pack_wordimage_f PACK_WORDIMAGE_F
+# define v2pack_wordimage_f V2PACK_WORDIMAGE_F
+# define pack_longimage_f PACK_LONGIMAGE_F
+# define v2pack_longimage_f V2PACK_LONGIMAGE_F
+# define readpack_word_f READPACK_WORD_F
+# define readpack_long_f READPACK_LONG_F
+# define mirror_wordimage MIRROR_WORDIMAGE
+# define mirror_longimage MIRROR_LONGIMAGE
+# define imsiz_f IMSIZ_F
+# else
+# define pack_wordimage_f pack_wordimage_f_
+# define v2pack_wordimage_f v2pack_wordimage_f_
+# define pack_longimage_f pack_longimage_f_
+# define v2pack_longimage_f v2pack_longimage_f_
+# define readpack_word_f readpack_word_f_
+# define readpack_long_f readpack_long_f_
+# define mirror_wordimage mirror_wordimage_
+# define mirror_longimage mirror_longimage_
+# define imsiz_f imsiz_f_
+# endif
+#endif
+
+/******************************************************************************/
+
+/* Prototypes of the functions in this sourcefile, as required by the ANSI
+ standard. The pack_c.h file contains the functions other routines might
+ call. Here are functions which will are not really usefull for image
+ processing programmes, and which are used locally in this file. Also
+ front-end fortran callable C-functions are not included in the pack_c.h
+ file. */
+
+
+#if defined (PROTOTYPE)
+
+/* Functions required for packing: */
+
+
+void pack_wordimage_f(WORD *img, LONG *x, LONG *y, LONG *filename);
+/* Fortran frontend of pack_wordimage_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+void v2pack_wordimage_f(WORD *img, LONG *x, LONG *y, LONG *filename);
+/* Fortran frontend of pack_wordimage_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. This function generates
+ Version 2 images! */
+
+void pack_longimage_f(LONG *img, LONG *x, LONG *y, LONG *filename);
+/* Fortran frontend of pack_longimage_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+void v2pack_longimage_f(LONG *img, LONG *x, LONG *y, LONG *filename);
+/* Fortran frontend of pack_longimage_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. This function generates
+ Version 2 images! */
+
+void pack_wordimage_c(WORD *img, int x, int y, char *filename);
+/* Pack image 'img', containing 'x * y' WORD-sized pixels into 'filename'.
+ Opens file and wraps pack_wordimage_copen() */
+
+void pack_wordimage_copen(WORD *img, int x, int y, FILE *packfile);
+/* Pack image 'img', containing 'x * y' WORD-sized pixels into open file
+ 'packfile'. */
+
+void pack_longimage_c(LONG *img, int x, int y, char *filename);
+/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'.
+ Opens file and wraps pack_long_image_copen()*/
+
+void pack_longimage_copen(LONG *img, int x, int y, FILE *packfile);
+/* Pack image 'img', containing 'x * y' LONG-sized pixels into open file
+ 'packfile'. */
+
+LONG *diff_words(WORD *img, int x, int y, LONG *diffs, LONG done);
+/* Calculates the difference of WORD-sized pixels of an image with the
+ truncated mean value of four of its neighbours. 'x' is the number of fast
+ coordinates of the image 'img', 'y' is the number of slow coordinates,
+ 'diffs' will contain the differences, 'done' defines the index of the pixel
+ where calculating the differences should start. A pointer to the last
+ difference is returned. Maximally DIFFBUFSIZ differences are returned in
+ 'diffs'.*/
+
+LONG *diff_longs(LONG *img, int x, int y, LONG *diffs, LONG done);
+/* Calculates the difference of LONG-sized pixels of an image with the
+ truncated mean value of four of its neighbours. 'x' is the number of fast
+ coordinates of the image 'img', 'y' is the number of slow coordinates,
+ 'diffs' will contain the differences, 'done' defines the index of the pixel
+ where calculating the differences should start. A pointer to the last
+ difference is returned. Maximally DIFFBUFSIZ differences are returned in
+ 'diffs'.*/
+
+int bits(LONG *chunk, int n);
+/* Returns the number of bits neccesary to encode the longword-array 'chunk'
+ of size 'n' The size in bits of one encoded element can be 0, 4, 5, 6, 7,
+ 8, 16 or 32. */
+
+int v2bits(LONG *chunk, int n);
+/* Returns the number of bits neccesary to encode the longword-array 'chunk'
+ of size 'n' The size in bits of one encoded element can be 0, 3, 4, 5, 6, 7,
+ 8, 9, 10, 11, 12, 13, 14, 15, 16 or 32. */
+
+void pack_chunk(LONG *lng, int nmbr, int bitsize, FILE *file);
+/* Packs 'nmbr' LONGs starting at 'lng[0]' into a packed array of 'bitsize'
+ sized elements. If the internal buffer in which the array is packed is full,
+ it is flushed to 'file', making room for more of the packed array. If
+ ('lng == NULL'), the buffer is flushed aswell. */
+
+void v2pack_chunk(LONG *lng, int nmbr, int bitsize, FILE *file);
+/* Packs 'nmbr' LONGs starting at 'lng[0]' into a packed array of 'bitsize'
+ sized elements. If the internal buffer in which the array is packed is full,
+ it is flushed to 'file', making room for more of the packed array. If
+ ('lng == NULL'), the buffer is flushed aswell. This is a new function
+ included in version 2, but not existing in version 1! */
+
+void pack_longs(LONG *lng, int n, BYTE **target, int *bit, int size);
+/* Pack 'n' WORDS, starting with 'lng[0]' into the packed array 'target'. The
+ elements of such a packed array do not obey BYTE-boundaries, but are put one
+ behind the other without any spacing. Only the 'bitsiz' number of least
+ significant bits are used, the rest is truncated. The starting bit of
+ 'target' is 'bit' (bits range from 0 to 7). After completion of
+ 'pack_words()', both '**target' and '*bit' are updated and define the next
+ position in 'target' from where packing could continue. */
+
+
+
+/* Functions required for unpacking: */
+
+
+void readpack_word_f(WORD *img, LONG *filename);
+/* Fortran frontend of readpack_word_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+void readpack_long_f(LONG *img, LONG *filename);
+/* Fortran frontend of readpack_long_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+void unpack_word(FILE *packfile, int x, int y, WORD *img);
+/* Unpacks a packed image into the WORD-array 'img'. The image is stored
+ in 'packfile'. The file should be properly positioned: the first BYTE
+ read is assumed to be the first BYTE of the packed image. */
+
+void v2unpack_word(FILE *packfile, int x, int y, WORD *img);
+/* Unpacks a packed image into the WORD-array 'img'. The image is stored
+ in 'packfile'. The file should be properly positioned: the first BYTE
+ read is assumed to be the first BYTE of the packed image. This function
+ reads Version 2 packed images! */
+
+void unpack_long(FILE *packfile, int x, int y, LONG *img);
+/* Unpacks a packed image into the LONG-array 'img'. The image is stored
+ in 'packfile'. The file should be properly positioned: the first BYTE
+ read is assumed to be the first BYTE of the packed image. */
+
+void v2unpack_long(FILE *packfile, int x, int y, LONG *img);
+/* Unpacks a packed image into the LONG-array 'img'. The image is stored
+ in 'packfile'. The file should be properly positioned: the first BYTE
+ read is assumed to be the first BYTE of the packed image. This function
+ reads Version 2 packed images! */
+
+
+
+
+/* Function required to convert a WORD-array into a char array, required for
+ both compression and decompression if called from fortran. */
+
+char *long_to_char(LONG *lng, char *string);
+/* Shrinks an array of LONGs into an array of chars, used in order to translate
+ an encoded string array passed by fortran into a c-type string. Returns
+ 'string'. */
+
+void imsiz_f(LONG *filename, LONG *x, LONG *y);
+/* Fortran frontend of imsiz_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+
+
+/* Some other usefull functions for manipulating images. */
+
+void mirror_wordimg(WORD *img, LONG *x, LONG *y);
+/* Replaces img with its mirror by interchanging rows. '*x' is the fast index,
+ '*y' is the slow index. */
+
+void mirror_longimg(LONG *img, LONG *x, LONG *y);
+/* Replaces img with its mirror by interchanging rows. '*x' is the fast index,
+ '*y' is the slow index. */
+
+#endif /* (PROTOTYPE) */
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void pack_wordimage_f(WORD *img, LONG *x, LONG *y, LONG *filename)
+#else
+ void pack_wordimage_f(img, x, y, filename)
+ WORD *img;
+ LONG *x, *y, *filename;
+#endif
+/* Fortran frontend of pack_wordimage_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+{ char c_filename[1024];
+#if !defined (PROTOTYPE)
+ void pack_wordimage_c();
+ char *long_to_char();
+#endif
+
+ pack_wordimage_c(img, (LONG) *x, (LONG) *y,
+ long_to_char(filename, c_filename));}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void v2pack_wordimage_f(WORD *img, LONG *x, LONG *y, LONG *filename)
+#else
+ void v2pack_wordimage_f(img, x, y, filename)
+ WORD *img;
+ LONG *x, *y, *filename;
+#endif
+/* Fortran frontend of pack_wordimage_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. This function generates
+ Version 2 images!*/
+
+{ char c_filename[1024];
+#if !defined (PROTOTYPE)
+ void v2pack_wordimage_c();
+ char *long_to_char();
+#endif
+
+ v2pack_wordimage_c(img, (LONG) *x, (LONG) *y,
+ long_to_char(filename, c_filename));}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void pack_longimage_f(LONG *img, LONG *x, LONG *y, LONG *filename)
+#else
+ void pack_longimage_f(img, x, y, filename)
+ LONG *img, *x, *y, *filename;
+#endif
+/* Fortran frontend of pack_longimage_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+{ char c_filename[1024];
+#if !defined (PROTOTYPE)
+ void pack_longimage_c();
+ char *long_to_char();
+#endif
+
+ pack_longimage_c(img, (LONG) *x, (LONG) *y,
+ long_to_char(filename, c_filename));}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void v2pack_longimage_f(LONG *img, LONG *x, LONG *y, LONG *filename)
+#else
+ void v2pack_longimage_f(img, x, y, filename)
+ LONG *img, *x, *y, *filename;
+#endif
+/* Fortran frontend of pack_longimage_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+{ char c_filename[1024];
+#if !defined (PROTOTYPE)
+ void v2pack_longimage_c();
+ char *long_to_char();
+#endif
+
+ v2pack_longimage_c(img, (LONG) *x, (LONG) *y,
+ long_to_char(filename, c_filename));}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void pack_wordimage_copen(WORD *img, int x, int y, FILE *packfile)
+#else
+ void pack_wordimage_copen(img, x, y, packfile)
+ WORD *img;
+ int x, y;
+ FILE *packfile;
+#endif
+/* Pack image 'img', containing 'x * y' WORD-sized pixels into 'filename'. */
+
+{ int chunksiz, packsiz, nbits, next_nbits, tot_nbits;
+ LONG buffer[DIFFBUFSIZ];
+ LONG *diffs = buffer;
+ LONG *end = diffs - 1;
+ LONG done = 0;
+#if !defined (PROTOTYPE)
+ LONG *diff_words();
+ int bits();
+ void pack_chunk();
+#endif
+
+ fprintf(packfile, PACKIDENTIFIER, x, y);
+ while (done < (x * y))
+ { end = diff_words(img, x, y, buffer, done);
+ done += (end - buffer) + 1;
+ diffs = buffer;
+ while (diffs <= end)
+ { packsiz = 0;
+ chunksiz = 1;
+ nbits = bits(diffs, 1);
+ while (packsiz == 0)
+ { if (end <= (diffs + chunksiz * 2))
+ packsiz = chunksiz;
+ else
+ { next_nbits = bits(diffs + chunksiz, chunksiz);
+ tot_nbits = 2 * max(nbits, next_nbits);
+ if (tot_nbits >= (nbits + next_nbits + 6))
+ packsiz = chunksiz;
+ else
+ { nbits = tot_nbits;
+ if (chunksiz == 64)
+ packsiz = 128;
+ else
+ chunksiz *= 2;}}}
+ pack_chunk(diffs, packsiz, nbits / packsiz, packfile);
+ diffs += packsiz;}}
+ pack_chunk(NULL, 0, 0, packfile);
+}
+
+
+#if defined (PROTOTYPE)
+ void pack_wordimage_c(WORD *img, int x, int y, char *filename)
+#else
+ void pack_wordimage_c(img, x, y, filename)
+ WORD *img;
+ int x, y;
+ char *filename;
+#endif
+{
+ FILE *packfile = fopen(filename, "a");
+ if (packfile == NULL) {
+ fprintf(stderr,"The file %s cannot be created!\n ...giving up...\n",
+ filename);
+ exit(1);
+ } else {
+ pack_wordimage_copen(img, x, y, packfile);
+ fclose(packfile);
+ }
+}
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void v2pack_wordimage_c(WORD *img, int x, int y, char *filename)
+#else
+ void v2pack_wordimage_c(img, x, y, filename)
+ WORD *img;
+ int x, y;
+ char *filename;
+#endif
+/* Pack image 'img', containing 'x * y' WORD-sized pixels into 'filename'. */
+
+{ int chunksiz, packsiz, nbits, next_nbits, tot_nbits;
+ LONG buffer[DIFFBUFSIZ];
+ LONG *diffs = buffer;
+ LONG *end = diffs - 1;
+ LONG done = 0;
+ FILE *packfile;
+#if !defined (PROTOTYPE)
+ LONG *diff_words();
+ int v2bits();
+ void v2pack_chunk();
+#endif
+
+ packfile = fopen(filename, "a");
+ if (packfile == NULL)
+ { fprintf(stderr,"The file %s cannot be created!\n ...giving up...\n",
+ filename);
+ exit(1);}
+ else
+ { fprintf(packfile, V2IDENTIFIER, x, y);
+ while (done < (x * y))
+ { end = diff_words(img, x, y, buffer, done);
+ done += (end - buffer) + 1;
+ diffs = buffer;
+ while (diffs <= end)
+ { packsiz = 0;
+ chunksiz = 1;
+ nbits = v2bits(diffs, 1);
+ while (packsiz == 0)
+ { if (end <= (diffs + chunksiz * 2))
+ packsiz = chunksiz;
+ else
+ { next_nbits = v2bits(diffs + chunksiz, chunksiz);
+ tot_nbits = 2 * max(nbits, next_nbits);
+ if (tot_nbits >= (nbits + next_nbits + 7))
+ packsiz = chunksiz;
+ else
+ { nbits = tot_nbits;
+ if (chunksiz == 64)
+ packsiz = 128;
+ else
+ chunksiz *= 2;}}}
+ v2pack_chunk(diffs, packsiz, nbits / packsiz, packfile);
+ diffs += packsiz;}}
+ v2pack_chunk(NULL, 0, 0, packfile);
+ fclose(packfile);}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void pack_longimage_copen(LONG *img, int x, int y, FILE *packfile)
+#else
+ void pack_longimage_copen(img, x, y, packfile)
+ LONG *img;
+ int x, y;
+ FILE *packfile;
+#endif
+/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'. */
+{ int chunksiz, packsiz, nbits, next_nbits, tot_nbits;
+ LONG buffer[DIFFBUFSIZ];
+ LONG *diffs = buffer;
+ LONG *end = diffs - 1;
+ LONG done = 0;
+#if !defined (PROTOTYPE)
+ LONG *diff_longs();
+ int bits();
+ void pack_chunk();
+#endif
+
+ fprintf(packfile, PACKIDENTIFIER, x, y);
+ while (done < (x * y))
+ { end = diff_longs(img, x, y, buffer, done);
+ done += (end - buffer) + 1;
+ diffs = buffer;
+ while (diffs <= end)
+ { packsiz = 0;
+ chunksiz = 1;
+ nbits = bits(diffs, 1);
+ while (packsiz == 0)
+ { if (end <= (diffs + chunksiz * 2))
+ packsiz = chunksiz;
+ else
+ { next_nbits = bits(diffs + chunksiz, chunksiz);
+ tot_nbits = 2 * max(nbits, next_nbits);
+ if (tot_nbits >= (nbits + next_nbits + 6))
+ packsiz = chunksiz;
+ else
+ { nbits = tot_nbits;
+ if (chunksiz == 64)
+ packsiz = chunksiz * 2;
+ else
+ chunksiz *= 2;}}}
+ pack_chunk(diffs, packsiz, nbits / packsiz, packfile);
+ diffs += packsiz;}}
+ pack_chunk(NULL, 0, 0, packfile);
+}
+
+
+#if defined (PROTOTYPE)
+ void pack_longimage_c(LONG *img, int x, int y, char *filename)
+#else
+ void pack_longimage_c(img, x, y, filename)
+ LONG *img;
+ int x, y;
+ char *filename;
+#endif
+/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'. */
+{
+ FILE *packfile = fopen(filename, "a");
+ if (packfile == NULL)
+ { fprintf(stderr,"The file %s cannot be created!\n ...giving up...\n",
+ filename);
+ exit(1);}
+ else
+ { pack_longimage_copen(img, x, y, packfile);
+ fclose(packfile);
+ }
+}
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void v2pack_longimage_c(LONG *img, int x, int y, char *filename)
+#else
+ void v2pack_longimage_c(img, x, y, filename)
+ LONG *img;
+ int x, y;
+ char *filename;
+#endif
+/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'. */
+
+{ int chunksiz, packsiz, nbits, next_nbits, tot_nbits;
+ LONG buffer[DIFFBUFSIZ];
+ LONG *diffs = buffer;
+ LONG *end = diffs - 1;
+ LONG done = 0;
+ FILE *packfile;
+#if !defined (PROTOTYPE)
+ LONG *diff_longs();
+ int v2bits();
+ void v2pack_chunk();
+#endif
+
+ packfile = fopen(filename, "a");
+ if (packfile == NULL)
+ { fprintf(stderr,"The file %s cannot be created!\n ...giving up...\n",
+ filename);
+ exit(1);}
+ else
+ { fprintf(packfile, V2IDENTIFIER, x, y);
+ while (done < (x * y))
+ { end = diff_longs(img, x, y, buffer, done);
+ done += (end - buffer) + 1;
+ diffs = buffer;
+ while (diffs <= end)
+ { packsiz = 0;
+ chunksiz = 1;
+ nbits = v2bits(diffs, 1);
+ while (packsiz == 0)
+ { if (end <= (diffs + chunksiz * 2))
+ packsiz = chunksiz;
+ else
+ { next_nbits = v2bits(diffs + chunksiz, chunksiz);
+ tot_nbits = 2 * max(nbits, next_nbits);
+ if (tot_nbits >= (nbits + next_nbits + 7))
+ packsiz = chunksiz;
+ else
+ { nbits = tot_nbits;
+ if (chunksiz == 64)
+ packsiz = chunksiz * 2;
+ else
+ chunksiz *= 2;}}}
+ v2pack_chunk(diffs, packsiz, nbits / packsiz, packfile);
+ diffs += packsiz;}}
+ v2pack_chunk(NULL, 0, 0, packfile);
+ fclose(packfile);}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ LONG *diff_words(WORD *word, int x, int y, LONG *diffs, LONG done)
+#else
+ LONG *diff_words(word, x, y, diffs, done)
+ WORD *word;
+ int x, y;
+ LONG *diffs, done;
+#endif
+/* Calculates the difference of WORD-sized pixels of an image with the
+ truncated mean value of four of its neighbours. 'x' is the number of fast
+ coordinates of the image 'img', 'y' is the number of slow coordinates,
+ 'diffs' will contain the differences, 'done' defines the index of the pixel
+ where calculating the differences should start. A pointer to the last
+ difference is returned. Maximally DIFFBUFSIZ differences are returned in
+ 'diffs'.*/
+
+{ LONG i = 0;
+ LONG tot = x * y;
+
+ if (done == 0)
+ { *diffs = word[0];
+ ++diffs;
+ ++done;
+ ++i;}
+ while ((done <= x) && (i < DIFFBUFSIZ))
+ { *diffs = word[done] - word[done - 1];
+ ++diffs;
+ ++done;
+ ++i;}
+ while ((done < tot) && (i < DIFFBUFSIZ))
+ { *diffs = word[done] - (word[done - 1] + word[done - x + 1] +
+ word[done - x] + word[done - x - 1] + 2) / 4;
+ ++diffs;
+ ++done;
+ ++i;}
+ return(--diffs);}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ LONG *diff_longs(LONG *lng, int x, int y, LONG *diffs, LONG done)
+#else
+ LONG *diff_longs(lng, x, y, diffs, done)
+ LONG *lng, *diffs, done;
+ int x, y;
+#endif
+/* Calculates the difference of LONG-sized pixels of an image with the
+ truncated mean value of four of its neighbours. 'x' is the number of fast
+ coordinates of the image 'img', 'y' is the number of slow coordinates,
+ 'diffs' will contain the differences, 'done' defines the index of the pixel
+ where calculating the differences should start. A pointer to the last
+ difference is returned. Maximally DIFFBUFSIZ differences are returned in
+ 'diffs'.*/
+
+{ LONG i = 0, d;
+ LONG tot = x * y;
+ LONG huge = shift_left(1, 30);
+
+ if (done == 0)
+ { *diffs = min(max(-huge, lng[0]), huge);
+ ++diffs;
+ ++done;
+ ++i;}
+ while ((done <= x) && (i < DIFFBUFSIZ))
+ { d = lng[done] - lng[done - 1];
+ *diffs = min(max(-huge, d), huge);
+ ++diffs;
+ ++done;
+ ++i;}
+ while ((done < tot) && (i < DIFFBUFSIZ))
+ { d = lng[done] - (lng[done - 1] + lng[done - x + 1] +
+ lng[done - x] + lng[done - x - 1] + 2) / 4;
+ *diffs = min(max(-huge, d), huge);
+ ++diffs;
+ ++done;
+ ++i;}
+ return(--diffs);}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ int bits(LONG *chunk, int n)
+#else
+ int bits(chunk, n)
+ LONG *chunk;
+ int n;
+#endif
+/* Returns the number of bits neccesary to encode the longword-array 'chunk'
+ of size 'n' The size in bits of one encoded element can be 0, 4, 5, 6, 7,
+ 8, 16 or 32. */
+
+{ int size, maxsize, i;
+
+ for (i = 1, maxsize = abs(chunk[0]); i < n; ++i)
+ maxsize = max(maxsize, abs(chunk[i]));
+ if (maxsize == 0)
+ size = 0;
+ else if (maxsize < 8)
+ size = 4 * n;
+ else if (maxsize < 16)
+ size = 5 * n;
+ else if (maxsize < 32)
+ size = 6 * n;
+ else if (maxsize < 64)
+ size = 7 * n;
+ else if (maxsize < 128)
+ size = 8 * n;
+ else if (maxsize < 32768)
+ size = 16 * n;
+ else
+ size = 32 * n;
+ return(size);}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ int v2bits(LONG *chunk, int n)
+#else
+ int v2bits(chunk, n)
+ LONG *chunk;
+ int n;
+#endif
+/* Returns the number of bits neccesary to encode the longword-array 'chunk'
+ of size 'n' The size in bits of one encoded element can be 0, 3, 4, 5, 6, 7,
+ 8, 9, 10, 11, 12, 13, 14, 15, 16 or 32. */
+
+{ int size, maxsize, i;
+
+ for (i = 1, maxsize = abs(chunk[0]); i < n; ++i)
+ maxsize = max(maxsize, abs(chunk[i]));
+ if (maxsize == 0)
+ size = 0;
+ else if (maxsize < 4)
+ size = 3 * n;
+ else if (maxsize < 8)
+ size = 4 * n;
+ else if (maxsize < 16)
+ size = 5 * n;
+ else if (maxsize < 32)
+ size = 6 * n;
+ else if (maxsize < 64)
+ size = 7 * n;
+ else if (maxsize < 128)
+ size = 8 * n;
+ else if (maxsize < 256)
+ size = 9 * n;
+ else if (maxsize < 512)
+ size = 10 * n;
+ else if (maxsize < 1024)
+ size = 11 * n;
+ else if (maxsize < 2048)
+ size = 12 * n;
+ else if (maxsize < 4096)
+ size = 13 * n;
+ else if (maxsize < 8192)
+ size = 14 * n;
+ else if (maxsize < 16384)
+ size = 15 * n;
+ else if (maxsize < 32768)
+ size = 16 * n;
+ else
+ size = 32 * n;
+ return(size);}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void pack_chunk(LONG *lng, int nmbr, int bitsize, FILE *packfile)
+#else
+ void pack_chunk(lng, nmbr, bitsize, packfile)
+ LONG *lng;
+ int nmbr, bitsize;
+ FILE *packfile;
+#endif
+/* Packs 'nmbr' LONGs starting at 'lng[0]' into a packed array of 'bitsize'
+ sized elements. If the internal buffer in which the array is packed is full,
+ it is flushed to 'file', making room for more of the packed array. If
+ ('lng == NULL'), the buffer is flushed aswell. */
+
+{ static LONG bitsize_encode[33] = {0, 0, 0, 0, 1, 2, 3, 4, 5, 0, 0,
+ 0, 0, 0, 0, 0, 6, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7};
+ LONG descriptor[2], i, j;
+ static BYTE *buffer = NULL;
+ static BYTE *buffree = NULL;
+ static int bitmark;
+#if !defined (PROTOTYPE)
+ void pack_longs();
+#endif
+
+ if (buffer == NULL)
+ { buffree = buffer = (BYTE *) malloc(PACKBUFSIZ);
+ bitmark = 0;}
+ if (lng != NULL)
+ { for (i = nmbr, j = 0; i > 1; i /= 2, ++j);
+ descriptor[0] = j;
+ descriptor[1] = bitsize_encode[bitsize];
+ if ((buffree - buffer) > (PACKBUFSIZ - (130 * 4)))
+ { fwrite(buffer, sizeof(BYTE), buffree - buffer, packfile);
+ buffer[0] = buffree[0];
+ buffree = buffer;}
+ pack_longs(descriptor, 2, &buffree, &bitmark, 3);
+ pack_longs(lng, nmbr, &buffree, &bitmark, bitsize);}
+ else
+ { int len=buffree-buffer;
+ if (bitmark!=0) len++;
+ fwrite(buffer, sizeof(BYTE), len, packfile);
+ free((void *) buffer);
+ buffer = NULL;}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void v2pack_chunk(LONG *lng, int nmbr, int bitsize, FILE *packfile)
+#else
+ void v2pack_chunk(lng, nmbr, bitsize, packfile)
+ LONG *lng;
+ int nmbr, bitsize;
+ FILE *packfile;
+#endif
+/* Packs 'nmbr' LONGs starting at 'lng[0]' into a packed array of 'bitsize'
+ sized elements. If the internal buffer in which the array is packed is full,
+ it is flushed to 'file', making room for more of the packed array. If
+ ('lng == NULL'), the buffer is flushed aswell. This is a new function
+ included in version 2, but not existing in version 1! */
+
+{ static LONG bitsize_encode[33] = {0, 0, 0, 1, 2, 3, 4, 5, 6, 7, 8,
+ 9, 10, 11, 12, 13, 14, 0, 0, 0, 0, 0,
+ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 15};
+ LONG descriptor[2], i, j;
+ static BYTE *buffer = NULL;
+ static BYTE *buffree = NULL;
+ static int bitmark;
+#if !defined (PROTOTYPE)
+ void pack_longs();
+#endif
+
+ if (buffer == NULL)
+ { buffree = buffer = (BYTE *) malloc(PACKBUFSIZ);
+ bitmark = 0;}
+ if (lng != NULL)
+ { for (i = nmbr, j = 0; i > 1; i /= 2, ++j);
+ descriptor[0] = j;
+ descriptor[1] = bitsize_encode[bitsize];
+ if ((buffree - buffer) > (PACKBUFSIZ - (130 * 4)))
+ { fwrite(buffer, sizeof(BYTE), buffree - buffer, packfile);
+ buffer[0] = buffree[0];
+ buffree = buffer;}
+ pack_longs(descriptor, 1, &buffree, &bitmark, 3);
+ pack_longs(descriptor + 1, 1, &buffree, &bitmark, 4);
+ pack_longs(lng, nmbr, &buffree, &bitmark, bitsize);}
+ else
+ { int len=buffree-buffer;
+ if (bitmark!=0) len++;
+ fwrite(buffer, sizeof(BYTE), len, packfile);
+ free((void *) buffer);
+ buffer = NULL;}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void pack_longs(LONG *lng, int n, BYTE **target, int *bit, int size)
+#else
+ void pack_longs(lng, n, target, bit, size)
+ LONG *lng;
+ int n, *bit, size;
+ BYTE **target;
+#endif
+/* Pack 'n' WORDS, starting with 'lng[0]' into the packed array 'target'. The
+ elements of such a packed array do not obey BYTE-boundaries, but are put one
+ behind the other without any spacing. Only the 'bitsiz' number of least
+ significant bits are used. The starting bit of 'target' is 'bit' (bits range
+ from 0 to 7). After completion of 'pack_words()', both '**target' and '*bit'
+ are updated and define the next position in 'target' from which packing
+ could continue. */
+
+{ LONG mask, window;
+ int valids, i, temp;
+ int temp_bit = *bit;
+ BYTE *temp_target = *target;
+
+ if (size > 0)
+ { mask = setbits[size];
+ for (i = 0; i < n; ++i)
+ { window = lng[i] & mask;
+ valids = size;
+ if (temp_bit == 0)
+ *temp_target = (BYTE) window;
+ else
+ { temp = shift_left(window, temp_bit);
+ *temp_target |= temp;}
+ window = shift_right(window, 8 - temp_bit);
+ valids = valids - (8 - temp_bit);
+ if (valids < 0)
+ temp_bit += size;
+ else
+ { while (valids > 0)
+ { *++temp_target = (BYTE) window;
+ window = shift_right(window, 8);
+ valids -= 8;}
+ temp_bit = 8 + valids;}
+ if (valids == 0)
+ { temp_bit = 0;
+ ++temp_target;}}
+ *target = temp_target;
+ *bit = (*bit + (size * n)) % 8;}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void readpack_word_f(WORD *img, LONG *filename)
+#else
+ void readpack_word_f(img, filename)
+ WORD *img;
+ LONG *filename;
+#endif
+/* Fortran frontend of readpack_word_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+{ char c_filename[1024];
+#if !defined (PROTOTYPE)
+ void readpack_word_c();
+ char *long_to_char();
+#endif
+
+ readpack_word_c(img, long_to_char(filename, c_filename));}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void readpack_long_f(LONG *img, LONG *filename)
+#else
+ void readpack_long_f(img, filename)
+ LONG *img, *filename;
+#endif
+/* Fortran frontend of readpack_long_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+{ char c_filename[1024];
+#if !defined (PROTOTYPE)
+ void readpack_long_c();
+ char *long_to_char();
+#endif
+
+ readpack_long_c(img, long_to_char(filename, c_filename));}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void readpack_word_c(WORD *img, char *filename)
+#else
+ void readpack_word_c(img, filename)
+ WORD *img;
+ char *filename;
+#endif
+/* Unpacks packed image from 'filename' into the WORD-array 'img'. Scans the
+ file defined by 'filename' until the PACKIDENTIFIER is found, then unpacks
+ starting from there. */
+
+{ FILE *packfile;
+ int x = 0, y = 0, i = 0, c = 0, version = 0;
+ char header[BUFSIZ];
+#if !defined (PROTOTYPE)
+ void unpack_word();
+ void v2unpack_word();
+#endif
+
+ packfile = fopen(filename, "r");
+ if (packfile == NULL)
+ printf("%s does not exist.\n", filename);
+ else
+ { header[0] = '\n';
+ header[1] = 0;
+ while ((c != EOF) && ((x == 0) || (y == 0)))
+ { c = i = x = y = 0;
+ while ((++i < BUFSIZ) && (c != EOF) && (c != '\n') && (x==0) && (y==0))
+ if ((header[i] = c = getc(packfile)) == '\n')
+ { if (sscanf(header, PACKIDENTIFIER, &x, &y) == 2)
+ version = 1;
+ else if (sscanf(header, V2IDENTIFIER, &x, &y) == 2)
+ version = 2;}}
+ if (version == 1)
+ unpack_word(packfile, x, y, img);
+ else if (version == 2)
+ v2unpack_word(packfile, x, y, img);
+ fclose(packfile);}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void readpack_long_c(LONG *img, char *filename)
+#else
+ void readpack_long_c(img, filename)
+ LONG *img;
+ char *filename;
+#endif
+/* Unpacks packed image from 'filename' into the LONG-array 'img'. Scans the
+ file defined by 'filename' until the PACKIDENTIFIER is found, then unpacks
+ starting from there. */
+
+{ FILE *packfile;
+ int x = 0, y = 0, i = 0, c = 0, version = 0;
+ char header[BUFSIZ];
+#if !defined (PROTOTYPE)
+ void unpack_long();
+ void v2unpack_long();
+#endif
+
+ packfile = fopen(filename, "r");
+ if (packfile == NULL)
+ printf("%s does not exist.", filename);
+ else
+ { header[0] = '\n';
+ header[1] = 0;
+ while ((c != EOF) && ((x == 0) || (y == 0)))
+ { c = i = x = y = 0;
+ while ((++i < BUFSIZ) && (c != EOF) && (c != '\n') && (x==0) && (y==0))
+ if ((header[i] = c = getc(packfile)) == '\n')
+ { if (sscanf(header, PACKIDENTIFIER, &x, &y) == 2)
+ version = 1;
+ else if (sscanf(header, V2IDENTIFIER, &x, &y) == 2)
+ version = 2;}}
+ if (version == 1)
+ unpack_long(packfile, x, y, img);
+ else if (version == 2)
+ v2unpack_long(packfile, x, y, img);
+ fclose(packfile);}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void unpack_word(FILE *packfile, int x, int y, WORD *img)
+#else
+ void unpack_word(packfile, x, y, img)
+ FILE *packfile;
+ int x, y;
+ WORD *img;
+#endif
+/* Unpacks a packed image into the WORD-array 'img'. The image is stored
+ in 'packfile'. The file should be properly positioned: the first BYTE
+ read is assumed to be the first BYTE of the packed image. */
+
+{ int valids = 0, spillbits = 0, usedbits, total = x * y;
+ LONG window = 0L, spill = 0, pixel = 0, nextint, bitnum, pixnum;
+ static int bitdecode[8] = {0, 4, 5, 6, 7, 8, 16, 32};
+
+ while (pixel < total)
+ { if (valids < 6)
+ { if (spillbits > 0)
+ { window |= shift_left(spill, valids);
+ valids += spillbits;
+ spillbits = 0;}
+ else
+ { spill = (LONG) getc(packfile);
+ spillbits = 8;}}
+ else
+ { pixnum = 1 << (window & setbits[3]);
+ window = shift_right(window, 3);
+ bitnum = bitdecode[window & setbits[3]];
+ window = shift_right(window, 3);
+ valids -= 6;
+ while ((pixnum > 0) && (pixel < total))
+ { if (valids < bitnum)
+ { if (spillbits > 0)
+ { window |= shift_left(spill, valids);
+ if ((32 - valids) > spillbits)
+ { valids += spillbits;
+ spillbits = 0;}
+ else
+ { usedbits = 32 - valids;
+ spill = shift_right(spill, usedbits);
+ spillbits -= usedbits;
+ valids = 32;}}
+ else
+ { spill = (LONG) getc(packfile);
+ spillbits = 8;}}
+ else
+ { --pixnum;
+ if (bitnum == 0)
+ nextint = 0;
+ else
+ { nextint = window & setbits[bitnum];
+ valids -= bitnum;
+ window = shift_right(window, bitnum);
+ if ((nextint & (1 << (bitnum - 1))) != 0)
+ nextint |= ~setbits[bitnum];}
+ if (pixel > x)
+ { img[pixel] = (WORD) (nextint +
+ (img[pixel-1] + img[pixel-x+1] +
+ img[pixel-x] + img[pixel-x-1] + 2) / 4);
+ ++pixel;}
+ else if (pixel != 0)
+ { img[pixel] = (WORD) (img[pixel - 1] + nextint);
+ ++pixel;}
+ else
+ img[pixel++] = (WORD) nextint;}}}}}
+
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void v2unpack_word(FILE *packfile, int x, int y, WORD *img)
+#else
+ void v2unpack_word(packfile, x, y, img)
+ FILE *packfile;
+ int x, y;
+ WORD *img;
+#endif
+/* Unpacks a packed image into the WORD-array 'img'. The image is stored
+ in 'packfile'. The file should be properly positioned: the first BYTE
+ read is assumed to be the first BYTE of the packed image. */
+
+{ int valids = 0, spillbits = 0, usedbits, total = x * y;
+ LONG window = 0L, spill = 0, pixel = 0, nextint, bitnum, pixnum;
+ static int bitdecode[16] = {0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,
+ 16, 32};
+
+ while (pixel < total)
+ { if (valids < 7)
+ { if (spillbits > 0)
+ { window |= shift_left(spill, valids);
+ valids += spillbits;
+ spillbits = 0;}
+ else
+ { spill = (LONG) getc(packfile);
+ spillbits = 8;}}
+ else
+ { pixnum = 1 << (window & setbits[3]);
+ window = shift_right(window, 3);
+ bitnum = bitdecode[window & setbits[4]];
+ window = shift_right(window, 4);
+ valids -= 7;
+ while ((pixnum > 0) && (pixel < total))
+ { if (valids < bitnum)
+ { if (spillbits > 0)
+ { window |= shift_left(spill, valids);
+ if ((32 - valids) > spillbits)
+ { valids += spillbits;
+ spillbits = 0;}
+ else
+ { usedbits = 32 - valids;
+ spill = shift_right(spill, usedbits);
+ spillbits -= usedbits;
+ valids = 32;}}
+ else
+ { spill = (LONG) getc(packfile);
+ spillbits = 8;}}
+ else
+ { --pixnum;
+ if (bitnum == 0)
+ nextint = 0;
+ else
+ { nextint = window & setbits[bitnum];
+ valids -= bitnum;
+ window = shift_right(window, bitnum);
+ if ((nextint & (1 << (bitnum - 1))) != 0)
+ nextint |= ~setbits[bitnum];}
+ if (pixel > x)
+ { img[pixel] = (WORD) (nextint +
+ (img[pixel-1] + img[pixel-x+1] +
+ img[pixel-x] + img[pixel-x-1] + 2) / 4);
+ ++pixel;}
+ else if (pixel != 0)
+ { img[pixel] = (WORD) (img[pixel - 1] + nextint);
+ ++pixel;}
+ else
+ img[pixel++] = (WORD) nextint;}}}}}
+
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void unpack_long(FILE *packfile, int x, int y, LONG *img)
+#else
+ void unpack_long(packfile, x, y, img)
+ FILE *packfile;
+ int x, y;
+ LONG *img;
+#endif
+/* Unpacks a packed image into the LONG-array 'img'. The image is stored
+ in 'packfile'. The file should be properly positioned: the first BYTE
+ read is assumed to be the first BYTE of the packed image. */
+
+{ int valids = 0, spillbits = 0, usedbits, total = x * y;
+ LONG window = 0L, spill = 0, pixel = 0, nextint, bitnum, pixnum;
+ static int bitdecode[8] = {0, 4, 5, 6, 7, 8, 16, 32};
+
+ while (pixel < total)
+ { if (valids < 6)
+ { if (spillbits > 0)
+ { window |= shift_left(spill, valids);
+ valids += spillbits;
+ spillbits = 0;}
+ else
+ { spill = (LONG) getc(packfile);
+ spillbits = 8;}}
+ else
+ { pixnum = 1 << (window & setbits[3]);
+ window = shift_right(window, 3);
+ bitnum = bitdecode[window & setbits[3]];
+ window = shift_right(window, 3);
+ valids -= 6;
+ while ((pixnum > 0) && (pixel < total))
+ { if (valids < bitnum)
+ { if (spillbits > 0)
+ { window |= shift_left(spill, valids);
+ if ((32 - valids) > spillbits)
+ { valids += spillbits;
+ spillbits = 0;}
+ else
+ { usedbits = 32 - valids;
+ spill = shift_right(spill, usedbits);
+ spillbits -= usedbits;
+ valids = 32;}}
+ else
+ { spill = (LONG) getc(packfile);
+ spillbits = 8;}}
+ else
+ { --pixnum;
+ if (bitnum == 0)
+ nextint = 0;
+ else
+ { nextint = window & setbits[bitnum];
+ valids -= bitnum;
+ window = shift_right(window, bitnum);
+ if ((nextint & (1 << (bitnum - 1))) != 0)
+ nextint |= ~setbits[bitnum];}
+ if (pixel > x)
+ { img[pixel] = (LONG) (nextint +
+ (img[pixel-1] + img[pixel-x+1] +
+ img[pixel-x] + img[pixel-x-1] + 2) / 4);
+ ++pixel;}
+ else if (pixel != 0)
+ { img[pixel] = (LONG) (img[pixel - 1] + nextint);
+ ++pixel;}
+ else
+ img[pixel++] = (LONG) nextint;}}}}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void v2unpack_long(FILE *packfile, int x, int y, LONG *img)
+#else
+ void v2unpack_long(packfile, x, y, img)
+ FILE *packfile;
+ int x, y;
+ LONG *img;
+#endif
+/* Unpacks a packed image into the LONG-array 'img'. The image is stored
+ in 'packfile'. The file should be properly positioned: the first BYTE
+ read is assumed to be the first BYTE of the packed image. */
+
+{ int valids = 0, spillbits = 0, usedbits, total = x * y;
+ LONG window = 0L, spill = 0, pixel = 0, nextint, bitnum, pixnum;
+ static int bitdecode[16] = {0, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,
+ 16, 32};
+
+ while (pixel < total)
+ { if (valids < 7)
+ { if (spillbits > 0)
+ { window |= shift_left(spill, valids);
+ valids += spillbits;
+ spillbits = 0;}
+ else
+ { spill = (LONG) getc(packfile);
+ spillbits = 8;}}
+ else
+ { pixnum = 1 << (window & setbits[3]);
+ window = shift_right(window, 3);
+ bitnum = bitdecode[window & setbits[4]];
+ window = shift_right(window, 4);
+ valids -= 7;
+ while ((pixnum > 0) && (pixel < total))
+ { if (valids < bitnum)
+ { if (spillbits > 0)
+ { window |= shift_left(spill, valids);
+ if ((32 - valids) > spillbits)
+ { valids += spillbits;
+ spillbits = 0;}
+ else
+ { usedbits = 32 - valids;
+ spill = shift_right(spill, usedbits);
+ spillbits -= usedbits;
+ valids = 32;}}
+ else
+ { spill = (LONG) getc(packfile);
+ spillbits = 8;}}
+ else
+ { --pixnum;
+ if (bitnum == 0)
+ nextint = 0;
+ else
+ { nextint = window & setbits[bitnum];
+ valids -= bitnum;
+ window = shift_right(window, bitnum);
+ if ((nextint & (1 << (bitnum - 1))) != 0)
+ nextint |= ~setbits[bitnum];}
+ if (pixel > x)
+ { img[pixel] = (LONG) (nextint +
+ (img[pixel-1] + img[pixel-x+1] +
+ img[pixel-x] + img[pixel-x-1] + 2) / 4);
+ ++pixel;}
+ else if (pixel != 0)
+ { img[pixel] = (LONG) (img[pixel - 1] + nextint);
+ ++pixel;}
+ else
+ img[pixel++] = (LONG) nextint;}}}}}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPES)
+ char *long_to_char(LONG *lng, char *string)
+#else
+ char *long_to_char(lng, string)
+ LONG *lng;
+ char *string;
+#endif
+/* Shrinks an array of LONGs into an array of chars, used in order to translate
+ an encoded string array passed by fortran into a c-type string. Returns
+ 'string'. */
+
+{ char *s = string;
+
+ do
+ *(s++) = (char) *lng;
+ while (*(lng++) != 0);
+ return(string);}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void imsiz_c(char *filename, LONG *x, LONG *y)
+#else
+ void imsiz_c(filename, x, y)
+ char *filename;
+ LONG *x, *y;
+#endif
+/* Determines the size of the the packed image "filename" after unpacking. The
+ dimensions are returned in x and y. */
+
+{ FILE *packfile;
+ int i = 0, c = 0;
+ char header[BUFSIZ];
+
+ packfile = fopen(filename, "r");
+ header[0] = '\n';
+ header[1] = 0;
+ *x = *y = 0;
+ if (packfile != NULL)
+ { while ((c != EOF) && ((*x == 0) || (*y == 0)))
+ { c = i = *x = *y = 0;
+ while ((++i < BUFSIZ) && (c != EOF) && (c != '\n') && (*x==0) && (*y==0))
+ { if ((header[i] = c = getc(packfile)) == '\n')
+ { if (sscanf(header, PACKIDENTIFIER, x, y) == 2) {
+/* version = 1; */
+ }
+ else if (sscanf(header, V2IDENTIFIER, x, y) == 2) {
+/* version = 2; */
+ }
+ }
+ }
+ }
+ }
+ fclose(packfile);
+}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void imsiz_f(LONG *filename, LONG *x, LONG *y)
+#else
+ void imsiz_f(filename, x, y)
+ LONG *filename, *x, *y;
+#endif
+/* Fortran frontend of imsiz_c. Because the way in which fortran
+ passes strings is not defined, it passes the filename in which the
+ packed image should be stored as an array of LONGs. */
+
+{ char c_filename[1024];
+#if !defined (PROTOTYPE)
+ void imsiz_c();
+ char *long_to_char();
+#endif
+
+ imsiz_c(long_to_char(filename, c_filename), x, y);}
+
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void mirror_wordimg(WORD *img, LONG *x, LONG *y)
+#else
+ void mirror_wordimg(img, x, y)
+ WORD *img;
+ LONG *x, *y;
+#endif
+/* Replaces img with its mirror by interchanging rows. 'x' is the fast index,
+ 'y' is the slow index. */
+
+{ WORD *buff;
+ int i, j;
+
+ buff = (WORD *)malloc(sizeof(WORD) * *x);
+ for (i = 0, j = *y - 1; i < j; ++i, --j)
+ { memcpy(buff, img + (i * *x), sizeof(WORD) * *x);
+ memcpy(img + (i * *x), img + (j * *x), sizeof(WORD) * *x);
+ memcpy(img + (j * *x), buff, sizeof(WORD) * *x);}
+ free((void *) buff);}
+
+
+
+/******************************************************************************/
+
+#if defined (PROTOTYPE)
+ void mirror_longimg(LONG *img, LONG *x, LONG *y)
+#else
+ void mirror_longimg(img, x, y)
+ LONG *img, *x, *y;
+#endif
+/* Replaces img with its mirror by interchanging rows. 'x' is the fast index,
+ 'y' is the slow index. */
+
+{ LONG *buff;
+ int i, j;
+
+ buff = (LONG *)malloc(sizeof(LONG) * *x);
+ for (i = 0, j = *y - 1; i < j; ++i, --j)
+ { memcpy(buff, img + (i * *x), sizeof(LONG) * *x);
+ memcpy(img + (i * *x), img + (j * *x), sizeof(LONG) * *x);
+ memcpy(img + (j * *x), buff, sizeof(LONG) * *x);}
+ free((void *) buff);}
+
+
+
+/******************************************************************************/
+
+
+
diff --git a/src/pack_c.h b/src/pack_c.h
new file mode 100644
index 0000000..f5b78cc
--- /dev/null
+++ b/src/pack_c.h
@@ -0,0 +1,140 @@
+/* Some general defines: */
+
+
+#define PACKIDENTIFIER "\nCCP4 packed image, X: %04d, Y: %04d\n"
+/* This string defines the start of a packed image. An image file is scanned
+ until this string is encountered, the size of the unpacked image is
+ determined from the values of X and Y (which are written out as formatted
+ ascii numbers), and the packed image is expected to start immediately after
+ the null-character ending the string. */
+
+#define V2IDENTIFIER "\nCCP4 packed image V2, X: %04d, Y: %04d\n"
+/* This string defines the start of a packed image. An image file is scanned
+ until this string is encountered, the size of the unpacked image is
+ determined from the values of X and Y (which are written out as formatted
+ ascii numbers), and the packed image is expected to start immediately after
+ the null-character ending the string. */
+
+#define PACKBUFSIZ BUFSIZ
+/* Size of internal buffer in which the packed array is stored during transit
+ form an unpacked image to a packed image on disk. It is set to the size
+ used by the buffered io-routines given in <stdio.h>, but it could be
+ anything. */
+
+#define DIFFBUFSIZ 16384L
+/* Size of the internal buffer in which the differences between neighbouring
+ pixels are stored prior to compression. The image is therefore compressed
+ in DIFFBUFSIZ chunks. Decompression does not need to know what DIFFBUFSIZ
+ was when the image was compressed. By increasing this value, the image
+ can be compressed into a packed image which is a few bytes smaller. Do
+ not decrease the value of DIFFBUFSIZ below 128L. */
+
+#define BYTE char
+/* BYTE is a one byte integer. */
+
+#define WORD short int
+/* WORD is a two-byte integer. */
+
+#define LONG int
+/* LONG is a four byte integer. */
+/* Dave Love 5/7/94: using `int' gets you 4 bytes on the 32-bit Unix
+ (and VAX) systems I know of and also on (64-bit) OSF/1 Alphas which
+ have 64-bit longs. (This definition previously used `long'.) */
+
+
+
+/******************************************************************************/
+
+/* Some usefull macros used in the code of this sourcefile: */
+
+
+#define max(x, y) (((x) > (y)) ? (x) : (y))
+/* Returns maximum of x and y. */
+
+#define min(x, y) (((x) < (y)) ? (x) : (y))
+/* Returns minimum of x and y. */
+
+#undef abs /* avoid complaint from DEC C, at least */
+#define abs(x) (((x) < 0) ? (-(x)) : (x))
+/* Returns the absolute value of x. */
+
+/* Used to be 'static const LONG' but const declaration gives trouble on HPs */
+#ifndef SKIP_SETBITS
+static LONG setbits[33] =
+ {0x00000000L, 0x00000001L, 0x00000003L, 0x00000007L,
+ 0x0000000FL, 0x0000001FL, 0x0000003FL, 0x0000007FL,
+ 0x000000FFL, 0x000001FFL, 0x000003FFL, 0x000007FFL,
+ 0x00000FFFL, 0x00001FFFL, 0x00003FFFL, 0x00007FFFL,
+ 0x0000FFFFL, 0x0001FFFFL, 0x0003FFFFL, 0x0007FFFFL,
+ 0x000FFFFFL, 0x001FFFFFL, 0x003FFFFFL, 0x007FFFFFL,
+ 0x00FFFFFFL, 0x01FFFFFFL, 0x03FFFFFFL, 0x07FFFFFFL,
+ 0x0FFFFFFFL, 0x1FFFFFFFL, 0x3FFFFFFFL, 0x7FFFFFFFL,
+ 0xFFFFFFFFL};
+/* This is not a macro really, but I've included it here anyway. Upon indexing,
+ it returns a LONG with the lower (index) number of bits set. It is equivalent
+ to the following macro:
+ #define setbits(n) (((n) == 32) : ((1L << (n)) - 1) : (-1L))
+ Indexing the const array should usually be slightly faster. */
+#endif
+
+#define shift_left(x, n) (((x) & setbits[32 - (n)]) << (n))
+/* This macro is included because the C standard does not properly define a
+ left shift: on some machines the bits which are pushed out at the left are
+ popped back in at the right. By masking, the macro prevents this behaviour.
+ If you are sure that your machine does not pops bits back in, you can speed
+ up the code insignificantly by taking out the masking. */
+
+#define shift_right(x, n) (((x) >> (n)) & setbits[32 - (n)])
+/* See comment on left shift. */
+
+
+
+/******************************************************************************/
+
+
+
+
+/* Functions required for packing: */
+
+#if defined (PROTOTYPE)
+
+
+void pack_wordimage_c(WORD *img, int x, int y, char *filename);
+/* Pack image 'img', containing 'x * y' WORD-sized pixels into 'filename'.
+ This function generates Version 1 images! */
+void pack_wordimage_copen(WORD *img, int x, int y, FILE *packfile)
+
+void pack_longimage_c(LONG *img, int x, int y, char *filename);
+/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'.
+ This function generates Version 1 images! */
+void pack_longimage_copen(LONG *img, int x, int y, FILE *packfile)
+
+
+void v2pack_wordimage_c(WORD *img, int x, int y, char *filename);
+/* Pack image 'img', containing 'x * y' WORD-sized pixels into 'filename'.
+ This function generates Version 2 images! */
+
+void v2pack_longimage_c(LONG *img, int x, int y, char *filename);
+/* Pack image 'img', containing 'x * y' LONG-sized pixels into 'filename'.
+ This function generates Version 2 images! */
+
+
+/* Functions required for unpacking: */
+void unpack_word(FILE *packfile, int x, int y, WORD *img);
+
+void readpack_word_c(WORD *img, char *filename);
+/* Unpacks packed image from 'filename' into the WORD-array 'img'. Scans the
+ file defined by 'filename' until the PACKIDENTIFIER is found, then unpacks
+ starting from there. */
+
+void readpack_long_c(LONG *img, char *filename);
+/* Unpacks packed image from 'filename' into the LONG-array 'img'. Scans the
+ file defined by 'filename' until the PACKIDENTIFIER is found, then unpacks
+ starting from there. */
+
+void imsiz_c(char *filename, LONG *x, LONG *y);
+/* Determines the size of the the packed image "filename" after unpacking. The
+ dimensions are returned in x and y. */
+
+#endif /* (PROTOTYPE) */
+
diff --git a/src/setup.py b/src/setup.py
index db29ea3..c283270 100644
--- a/src/setup.py
+++ b/src/setup.py
@@ -12,7 +12,7 @@ from numpy.distutils.misc_util import get_numpy_include_dirs
mar345_ext = Extension("mar345_IO",
include_dirs=get_numpy_include_dirs(),
- sources=['mar345_IO.c', "ccp4_pack.c"])
+ sources=["pack_c.c", 'mar345_IO.c', "ccp4_pack.c"])
setup(name='mar345_IO',
diff --git a/stdeb.cfg b/stdeb.cfg
index beba6ab..f46a91d 100644
--- a/stdeb.cfg
+++ b/stdeb.cfg
@@ -4,5 +4,5 @@ Depends: python-numpy
XS-Python-Version: >= 2.5
Maintainer: Jerome Kieffer <jerome.kieffer at esrf.fr>
Build-Depends: python-dev
-Recommends: python-numpy-ext, python-lxml, python-imaging
+Recommends: python-imaging, python-numpy-ext, python-lxml
diff --git a/test/coral31_benchheaders b/test/coral31_benchheaders
new file mode 100644
index 0000000..d622a64
--- /dev/null
+++ b/test/coral31_benchheaders
@@ -0,0 +1,46 @@
+ 0.000857 testimages/Cr8F8140k103.0026
+ 0.046055 testimages/Cr8F8140k103.0026.bz2
+ 0.001116 testimages/Cr8F8140k103.0026.gz
+ 0.000727 testimages/F2K_Seb_Lyso0675.edf
+ 0.083457 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.000906 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000454 testimages/GE_aSI_detector_image_1529
+ 0.058213 testimages/GE_aSI_detector_image_1529.bz2
+ 0.000798 testimages/GE_aSI_detector_image_1529.gz
+ 0.000572 testimages/b191_1_9_1.img
+ 0.057766 testimages/b191_1_9_1.img.bz2
+ 0.000981 testimages/b191_1_9_1.img.gz
+ 0.000556 testimages/b191_1_9_1_uncompressed.img
+ 0.078372 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.001016 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.003505 testimages/corkcont2_H_0089.mccd
+ 0.067027 testimages/corkcont2_H_0089.mccd.bz2
+ 0.004070 testimages/corkcont2_H_0089.mccd.gz
+ 0.000617 testimages/example.mar2300
+ 0.153640 testimages/example.mar2300.bz2
+ 0.000832 testimages/example.mar2300.gz
+ 0.000430 testimages/face.edf
+ 0.001603 testimages/face.edf.bz2
+ 0.001281 testimages/face.edf.gz
+ 0.000349 testimages/face.msk
+ 0.000797 testimages/face.msk.bz2
+ 0.000507 testimages/face.msk.gz
+ 0.000431 testimages/fit2d_click.edf
+ 0.002208 testimages/fit2d_click.edf.bz2
+ 0.011531 testimages/fit2d_click.edf.gz
+ 0.000408 testimages/fit2d_click.msk
+ 0.000592 testimages/fit2d_click.msk.bz2
+ 0.002028 testimages/fit2d_click.msk.gz
+ 0.000444 testimages/mb_LP_1_001.edf
+ 0.020046 testimages/mb_LP_1_001.img
+ 0.644009 testimages/mb_LP_1_001.img.bz2
+ 0.130721 testimages/mb_LP_1_001.img.gz
+ 0.000385 testimages/oPPA_5grains_0001.tif
+ 0.011607 testimages/oPPA_5grains_0001.tif.bz2
+ 0.001579 testimages/oPPA_5grains_0001.tif.gz
+ 0.003500 testimages/somedata_0001.mccd
+ 0.078679 testimages/somedata_0001.mccd.bz2
+ 0.003825 testimages/somedata_0001.mccd.gz
+ 0.000364 testimages/testmap1_0002.tif
+ 0.000399 testimages/testmap1_0002.tif.bz2
+ 0.000536 testimages/testmap1_0002.tif.gz
diff --git a/test/coral31_benchmark b/test/coral31_benchmark
new file mode 100644
index 0000000..99d2622
--- /dev/null
+++ b/test/coral31_benchmark
@@ -0,0 +1,53 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0000 0.0000 0.0100 0.508 testimages/Cr8F8140k103.0026
+0.0100 0.0000 0.0600 0.0358 0.0300 0.508 testimages/Cr8F8140k103.0026.bz2
+0.0000 0.0000 0.0100 0.0114 0.0100 0.508 testimages/Cr8F8140k103.0026.gz
+0.0100 0.0100 0.0300 8.003 testimages/F2K_Seb_Lyso0675.edf
+0.0000 0.0100 0.9700 0.9219 0.9200 8.003 testimages/F2K_Seb_Lyso0675.edf.bz2
+0.0000 0.0100 0.1400 0.1360 0.1200 8.003 testimages/F2K_Seb_Lyso0675.edf.gz
+0.0100 0.0200 0.0300 8.008 testimages/GE_aSI_detector_image_1529
+0.0100 0.0000 0.7700 0.6982 0.6800 8.008 testimages/GE_aSI_detector_image_1529.bz2
+0.0100 0.0000 0.1000 0.1031 0.1000 8.008 testimages/GE_aSI_detector_image_1529.gz
+0.0000 0.0000 0.3400 0.256 testimages/b191_1_9_1.img
+0.0000 0.0000 0.3800 0.0278 0.0300 0.256 testimages/b191_1_9_1.img.bz2
+0.0000 0.0000 0.3300 0.0083 0.0000 0.256 testimages/b191_1_9_1.img.gz
+0.0000 0.0000 0.0000 1.005 testimages/b191_1_9_1_uncompressed.img
+0.0000 0.0000 0.1400 0.0954 0.1000 1.005 testimages/b191_1_9_1_uncompressed.img.bz2
+0.0000 0.0000 0.0200 0.0159 0.0100 1.005 testimages/b191_1_9_1_uncompressed.img.gz
+0.0100 0.0100 0.1500 8.004 testimages/corkcont2_H_0089.mccd
+0.0100 0.0000 0.5000 0.3985 0.3700 8.004 testimages/corkcont2_H_0089.mccd.bz2
+0.0000 0.0000 0.1600 0.1114 0.0700 8.004 testimages/corkcont2_H_0089.mccd.gz
+0.0100 0.0000 0.1400 3.471 testimages/example.mar2300
+0.0000 0.0000 0.7900 0.5799 0.5500 3.471 testimages/example.mar2300.bz2
+0.0000 0.0100 0.1800 0.0671 0.0400 3.471 testimages/example.mar2300.gz
+0.0000 0.0000 0.0000 0.215 testimages/face.edf
+0.0000 0.0000 0.0100 0.0201 0.0000 0.215 testimages/face.edf.bz2
+0.0000 0.0000 0.0000 0.0183 0.0000 0.215 testimages/face.edf.gz
+0.0000 0.0000 0.0000 0.008 testimages/face.msk
+0.0000 0.0000 0.0100 0.0188 0.0000 0.008 testimages/face.msk.bz2
+0.0000 0.0100 0.0000 0.0185 0.0000 0.008 testimages/face.msk.gz
+0.0100 0.0000 0.0100 4.001 testimages/fit2d_click.edf
+0.0000 0.0000 0.0200 0.0436 0.0200 4.001 testimages/fit2d_click.edf.bz2
+0.0000 0.0000 0.0300 0.0524 0.0300 4.001 testimages/fit2d_click.edf.gz
+0.0000 0.0000 0.1100 0.126 testimages/fit2d_click.msk
+0.0000 0.0000 0.1100 0.0189 0.0100 0.126 testimages/fit2d_click.msk.bz2
+0.0000 0.0000 0.1000 0.0180 0.0000 0.126 testimages/fit2d_click.msk.gz
+0.0600 0.0700 0.1300 36.001 testimages/mb_LP_1_001.edf
+0.0400 0.0300 0.1600 18.000 testimages/mb_LP_1_001.img
+0.0100 0.0000 2.4600 2.4958 1.8100 18.000 testimages/mb_LP_1_001.img.bz2
+0.0100 0.0100 0.4100 0.2717 0.2300 18.000 testimages/mb_LP_1_001.img.gz
+0.0200 0.0100 0.1800 8.067 testimages/oPPA_5grains_0001.tif
+0.0000 0.0000 0.5100 0.5660 0.3400 8.067 testimages/oPPA_5grains_0001.tif.bz2
+0.0000 0.0000 0.1900 0.0829 0.0400 8.067 testimages/oPPA_5grains_0001.tif.gz
+0.0000 0.0000 0.0300 2.004 testimages/somedata_0001.mccd
+0.0000 0.0000 0.2600 0.2281 0.2100 2.004 testimages/somedata_0001.mccd.bz2
+0.0000 0.0000 0.0700 0.0507 0.0200 2.004 testimages/somedata_0001.mccd.gz
+0.0000 0.0000 0.0000 0.023 testimages/testmap1_0002.tif
+0.0000 0.0000 0.0000 0.0192 0.0000 0.023 testimages/testmap1_0002.tif.bz2
+0.0000 0.0000 0.0000 0.0205 0.0000 0.023 testimages/testmap1_0002.tif.gz
diff --git a/test/eeepc-jonathanw_benchheaders b/test/eeepc-jonathanw_benchheaders
new file mode 100644
index 0000000..32b0750
--- /dev/null
+++ b/test/eeepc-jonathanw_benchheaders
@@ -0,0 +1,46 @@
+ 0.002404 testimages/Cr8F8140k103.0026
+ 0.206815 testimages/Cr8F8140k103.0026.bz2
+ 0.003507 testimages/Cr8F8140k103.0026.gz
+ 0.001946 testimages/F2K_Seb_Lyso0675.edf
+ 0.400643 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.015549 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000832 testimages/GE_aSI_detector_image_1529
+ 0.297967 testimages/GE_aSI_detector_image_1529.bz2
+ 0.002485 testimages/GE_aSI_detector_image_1529.gz
+ 0.001397 testimages/b191_1_9_1.img
+ 0.399226 testimages/b191_1_9_1.img.bz2
+ 0.010648 testimages/b191_1_9_1.img.gz
+ 0.001454 testimages/b191_1_9_1_uncompressed.img
+ 0.386724 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.003699 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.013971 testimages/corkcont2_H_0089.mccd
+ 0.453871 testimages/corkcont2_H_0089.mccd.bz2
+ 0.017732 testimages/corkcont2_H_0089.mccd.gz
+ 0.001761 testimages/example.mar2300
+ 0.723718 testimages/example.mar2300.bz2
+ 0.002948 testimages/example.mar2300.gz
+ 0.000841 testimages/face.edf
+ 0.011863 testimages/face.edf.bz2
+ 0.004975 testimages/face.edf.gz
+ 0.000680 testimages/face.msk
+ 0.002963 testimages/face.msk.bz2
+ 0.001511 testimages/face.msk.gz
+ 0.000861 testimages/fit2d_click.edf
+ 0.011688 testimages/fit2d_click.edf.bz2
+ 0.035719 testimages/fit2d_click.edf.gz
+ 0.000706 testimages/fit2d_click.msk
+ 0.001966 testimages/fit2d_click.msk.bz2
+ 0.006991 testimages/fit2d_click.msk.gz
+ 0.000755 testimages/mb_LP_1_001.edf
+ 0.058444 testimages/mb_LP_1_001.img
+ 3.408607 testimages/mb_LP_1_001.img.bz2
+ 0.488263 testimages/mb_LP_1_001.img.gz
+ 0.000593 testimages/oPPA_5grains_0001.tif
+ 0.060364 testimages/oPPA_5grains_0001.tif.bz2
+ 0.005937 testimages/oPPA_5grains_0001.tif.gz
+ 0.013839 testimages/somedata_0001.mccd
+ 0.381711 testimages/somedata_0001.mccd.bz2
+ 0.019168 testimages/somedata_0001.mccd.gz
+ 0.000574 testimages/testmap1_0002.tif
+ 0.000943 testimages/testmap1_0002.tif.bz2
+ 0.001888 testimages/testmap1_0002.tif.gz
diff --git a/test/eeepc-jonathanw_benchmark b/test/eeepc-jonathanw_benchmark
new file mode 100644
index 0000000..f6a09ba
--- /dev/null
+++ b/test/eeepc-jonathanw_benchmark
@@ -0,0 +1,53 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0000 0.0000 0.0200 0.508 testimages/Cr8F8140k103.0026
+0.0000 0.0000 0.2700 0.1878 0.1600 0.508 testimages/Cr8F8140k103.0026.bz2
+0.0000 0.0000 0.0500 0.0430 0.0300 0.508 testimages/Cr8F8140k103.0026.gz
+0.0300 0.0300 0.0500 8.003 testimages/F2K_Seb_Lyso0675.edf
+0.0200 0.0100 3.7200 3.6164 3.4900 8.003 testimages/F2K_Seb_Lyso0675.edf.bz2
+0.0200 0.0200 0.5200 0.6880 0.5000 8.003 testimages/F2K_Seb_Lyso0675.edf.gz
+0.0300 0.0300 0.0600 8.008 testimages/GE_aSI_detector_image_1529
+0.0000 0.0200 3.1800 3.0424 2.8600 8.008 testimages/GE_aSI_detector_image_1529.bz2
+0.0100 0.0100 0.3800 0.5069 0.3500 8.008 testimages/GE_aSI_detector_image_1529.gz
+0.0000 0.0000 1.4400 0.256 testimages/b191_1_9_1.img
+0.0000 0.0100 1.7400 0.1409 0.1200 0.256 testimages/b191_1_9_1.img.bz2
+0.0000 0.0000 1.4200 0.0255 0.0200 0.256 testimages/b191_1_9_1.img.gz
+0.0000 0.0000 0.0200 1.005 testimages/b191_1_9_1_uncompressed.img
+0.0100 0.0000 0.6000 0.3607 0.3400 1.005 testimages/b191_1_9_1_uncompressed.img.bz2
+0.0100 0.0000 0.0500 0.0674 0.0400 1.005 testimages/b191_1_9_1_uncompressed.img.gz
+0.0300 0.0200 0.3400 8.004 testimages/corkcont2_H_0089.mccd
+0.0000 0.0100 1.9600 1.6794 1.5200 8.004 testimages/corkcont2_H_0089.mccd.bz2
+0.0000 0.0000 0.5700 0.4143 0.2900 8.004 testimages/corkcont2_H_0089.mccd.gz
+0.0100 0.0100 0.7000 3.471 testimages/example.mar2300
+0.0100 0.0100 3.0400 2.1931 2.0400 3.471 testimages/example.mar2300.bz2
+0.0100 0.0100 0.9000 0.2436 0.2100 3.471 testimages/example.mar2300.gz
+0.0100 0.0000 0.0000 0.215 testimages/face.edf
+0.0000 0.0000 0.0100 0.0284 0.0100 0.215 testimages/face.edf.bz2
+0.0000 0.0000 0.0000 0.0217 0.0100 0.215 testimages/face.edf.gz
+0.0000 0.0000 0.0200 0.008 testimages/face.msk
+0.0100 0.0000 0.0200 0.0181 0.0100 0.008 testimages/face.msk.bz2
+0.0000 0.0000 0.0200 0.0166 0.0000 0.008 testimages/face.msk.gz
+0.0300 0.0100 0.0400 4.001 testimages/fit2d_click.edf
+0.0000 0.0000 0.1300 0.1984 0.1100 4.001 testimages/fit2d_click.edf.bz2
+0.0000 0.0000 0.1300 0.1338 0.0900 4.001 testimages/fit2d_click.edf.gz
+0.0000 0.0000 0.3200 0.126 testimages/fit2d_click.msk
+0.0000 0.0000 0.3200 0.0212 0.0000 0.126 testimages/fit2d_click.msk.bz2
+0.0000 0.0000 0.3300 0.0201 0.0000 0.126 testimages/fit2d_click.msk.gz
+0.2000 0.1500 0.2800 36.001 testimages/mb_LP_1_001.edf
+0.0700 0.0800 0.3500 18.000 testimages/mb_LP_1_001.img
+0.0200 0.0200 10.4500 7.4476 6.8900 18.000 testimages/mb_LP_1_001.img.bz2
+0.0500 0.0200 1.5700 2.1255 0.9200 18.000 testimages/mb_LP_1_001.img.gz
+0.0400 0.0200 0.5300 8.067 testimages/oPPA_5grains_0001.tif
+0.0000 0.0000 1.9100 1.5322 1.3800 8.067 testimages/oPPA_5grains_0001.tif.bz2
+0.0000 0.0000 0.6400 0.2398 0.1800 8.067 testimages/oPPA_5grains_0001.tif.gz
+0.0000 0.0100 0.0900 2.004 testimages/somedata_0001.mccd
+0.0000 0.0000 0.9200 0.7265 0.6400 2.004 testimages/somedata_0001.mccd.bz2
+0.0000 0.0100 0.1700 0.1496 0.0900 2.004 testimages/somedata_0001.mccd.gz
+0.0000 0.0000 0.0000 0.023 testimages/testmap1_0002.tif
+0.0000 0.0000 0.0100 0.0211 0.0000 0.023 testimages/testmap1_0002.tif.bz2
+0.0100 0.0000 0.0000 0.0203 0.0000 0.023 testimages/testmap1_0002.tif.gz
diff --git a/test/esrflinux1-1a_benchheaders b/test/esrflinux1-1a_benchheaders
new file mode 100644
index 0000000..7b848b4
--- /dev/null
+++ b/test/esrflinux1-1a_benchheaders
@@ -0,0 +1,46 @@
+ 0.041507 testimages/Cr8F8140k103.0026
+ 0.060209 testimages/Cr8F8140k103.0026.bz2
+ 0.001523 testimages/Cr8F8140k103.0026.gz
+ 0.001040 testimages/F2K_Seb_Lyso0675.edf
+ 0.115198 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.001390 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000740 testimages/GE_aSI_detector_image_1529
+ 0.082954 testimages/GE_aSI_detector_image_1529.bz2
+ 0.001530 testimages/GE_aSI_detector_image_1529.gz
+ 0.001205 testimages/b191_1_9_1.img
+ 0.082022 testimages/b191_1_9_1.img.bz2
+ 0.001455 testimages/b191_1_9_1.img.gz
+ 0.000870 testimages/b191_1_9_1_uncompressed.img
+ 0.107474 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.002650 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.007094 testimages/corkcont2_H_0089.mccd
+ 0.135271 testimages/corkcont2_H_0089.mccd.bz2
+ 0.006231 testimages/corkcont2_H_0089.mccd.gz
+ 0.041302 testimages/example.mar2300
+ 0.215028 testimages/example.mar2300.bz2
+ 0.001293 testimages/example.mar2300.gz
+ 0.000765 testimages/face.edf
+ 0.002466 testimages/face.edf.bz2
+ 0.002021 testimages/face.edf.gz
+ 0.000607 testimages/face.msk
+ 0.041250 testimages/face.msk.bz2
+ 0.000841 testimages/face.msk.gz
+ 0.000759 testimages/fit2d_click.edf
+ 0.003282 testimages/fit2d_click.edf.bz2
+ 0.017603 testimages/fit2d_click.edf.gz
+ 0.000693 testimages/fit2d_click.msk
+ 0.000938 testimages/fit2d_click.msk.bz2
+ 0.003037 testimages/fit2d_click.msk.gz
+ 0.000748 testimages/mb_LP_1_001.edf
+ 0.028433 testimages/mb_LP_1_001.img
+ 0.835932 testimages/mb_LP_1_001.img.bz2
+ 0.171870 testimages/mb_LP_1_001.img.gz
+ 0.000714 testimages/oPPA_5grains_0001.tif
+ 0.031276 testimages/oPPA_5grains_0001.tif.bz2
+ 0.003840 testimages/oPPA_5grains_0001.tif.gz
+ 0.005126 testimages/somedata_0001.mccd
+ 0.110826 testimages/somedata_0001.mccd.bz2
+ 0.006386 testimages/somedata_0001.mccd.gz
+ 0.003645 testimages/testmap1_0002.tif
+ 0.001334 testimages/testmap1_0002.tif.bz2
+ 0.001180 testimages/testmap1_0002.tif.gz
diff --git a/test/esrflinux1-1a_benchmark b/test/esrflinux1-1a_benchmark
new file mode 100644
index 0000000..858b59e
--- /dev/null
+++ b/test/esrflinux1-1a_benchmark
@@ -0,0 +1,3563 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0000 0.0000 0.0200 0.508 testimages/Cr8F8140k103.0026
+Thu Oct 30 12:14:08 2008 stats
+
+ 637 function calls in 0.008 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.008 0.008 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.001 0.001 0.001 0.001 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.007 0.007 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.008 0.008 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.003 0.003 readbytestream.py:27(readbytestream)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 6 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.0800 0.0530 0.0400 0.508 testimages/Cr8F8140k103.0026.bz2
+Thu Oct 30 12:14:08 2008 stats
+
+ 637 function calls in 0.079 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.079 0.079 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.001 0.001 0.030 0.030 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.049 0.049 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.079 0.079 openimage.py:67(openimage)
+ 1 0.000 0.000 0.030 0.030 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.015 0.015 readbytestream.py:27(readbytestream)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 6 0.071 0.012 0.071 0.012 {method 'read' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'bz2.BZ2File' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tell' of 'bz2.BZ2File' objects}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.fromstring}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0100 0.0200 0.0182 0.0100 0.508 testimages/Cr8F8140k103.0026.gz
+Thu Oct 30 12:14:09 2008 stats
+
+ 818 function calls in 0.019 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.019 0.019 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.001 0.001 0.002 0.002 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.017 0.017 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 7 0.001 0.000 0.012 0.002 gzip.py:208(read)
+ 12 0.000 0.000 0.011 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 12 0.003 0.000 0.003 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:360(tell)
+ 1 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.019 0.019 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.012 0.012 readbytestream.py:27(readbytestream)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 12 0.006 0.001 0.006 0.001 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 27 0.000 0.000 0.000 0.000 {len}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 58 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 12 0.000 0.000 0.000 0.000 {min}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 2 0.000 0.000 0.000 0.000 {range}
+ 14 0.001 0.000 0.001 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0200 0.0200 8.003 testimages/F2K_Seb_Lyso0675.edf
+Thu Oct 30 12:14:09 2008 stats
+
+ 624 function calls in 0.034 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.034 0.034 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.001 0.001 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.031 0.031 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.032 0.032 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 12 0.000 0.000 0.000 0.000 {len}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 8 0.015 0.002 0.015 0.002 {method 'read' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.015 0.015 0.015 0.015 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+
+
+0.0100 0.0000 1.1700 1.1390 1.0800 8.003 testimages/F2K_Seb_Lyso0675.edf.bz2
+Thu Oct 30 12:14:13 2008 stats
+
+ 624 function calls in 1.164 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 1.164 1.164 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.001 0.001 0.058 0.058 edfimage.py:55(_readheader)
+ 1 0.000 0.000 1.104 1.104 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.002 0.001 fabioimage.py:259(_open)
+ 2 0.001 0.001 0.001 0.001 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 1.163 1.163 openimage.py:67(openimage)
+ 1 0.001 0.001 0.058 0.058 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 12 0.000 0.000 0.000 0.000 {len}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 8 1.142 0.143 1.142 0.143 {method 'read' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.015 0.015 0.015 0.015 {numpy.core.multiarray.fromstring}
+
+
+0.0100 0.0100 0.1900 0.6054 0.1700 8.003 testimages/F2K_Seb_Lyso0675.edf.gz
+Thu Oct 30 12:14:15 2008 stats
+
+ 845 function calls in 0.595 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.595 0.595 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.001 0.001 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.590 0.590 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.401 0.200 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.401 0.200 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 8 0.002 0.000 0.174 0.022 gzip.py:208(read)
+ 17 0.000 0.000 0.172 0.010 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 16 0.041 0.003 0.054 0.003 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.400 0.200 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.593 0.593 openimage.py:67(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 16 0.108 0.007 0.108 0.007 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 45 0.000 0.000 0.000 0.000 {len}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 68 0.009 0.000 0.009 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.015 0.015 0.015 0.015 {numpy.core.multiarray.fromstring}
+ 2 0.400 0.200 0.400 0.200 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 18 0.013 0.001 0.013 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0200 0.0400 8.008 testimages/GE_aSI_detector_image_1529
+Thu Oct 30 12:14:16 2008 stats
+
+ 87 function calls in 0.434 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.434 0.434 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 GEimage.py:29(_readheader)
+ 1 0.001 0.001 0.031 0.031 GEimage.py:460(read)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.401 0.201 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.432 0.432 openimage.py:67(openimage)
+ 1 0.000 0.000 0.401 0.401 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 21 0.015 0.001 0.015 0.001 {method 'read' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 9 0.015 0.002 0.015 0.002 {numpy.core.multiarray.fromstring}
+ 2 0.401 0.201 0.401 0.201 {open}
+
+
+0.0100 0.0000 0.9400 0.8904 0.8400 8.008 testimages/GE_aSI_detector_image_1529.bz2
+Thu Oct 30 12:14:19 2008 stats
+
+ 87 function calls in 0.947 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.947 0.947 <string>:1(<module>)
+ 1 0.000 0.000 0.040 0.040 GEimage.py:29(_readheader)
+ 1 0.002 0.002 0.904 0.904 GEimage.py:460(read)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.945 0.945 openimage.py:67(openimage)
+ 1 0.001 0.001 0.041 0.041 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 21 0.885 0.042 0.885 0.042 {method 'read' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.040 0.013 0.040 0.013 {method 'seek' of 'bz2.BZ2File' objects}
+ 9 0.016 0.002 0.016 0.002 {numpy.core.multiarray.fromstring}
+
+
+0.0000 0.0100 0.1500 0.1368 0.1200 8.008 testimages/GE_aSI_detector_image_1529.gz
+Thu Oct 30 12:14:20 2008 stats
+
+ 365 function calls in 0.147 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.147 0.147 <string>:1(<module>)
+ 1 0.000 0.000 0.001 0.001 GEimage.py:29(_readheader)
+ 1 0.002 0.002 0.144 0.144 GEimage.py:460(read)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 32 0.002 0.000 0.127 0.004 gzip.py:208(read)
+ 15 0.000 0.000 0.125 0.008 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 15 0.041 0.003 0.054 0.004 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
+ 3 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.145 0.145 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 15 0.066 0.004 0.066 0.004 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 33 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 110 0.005 0.000 0.005 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 15 0.000 0.000 0.000 0.000 {min}
+ 9 0.016 0.002 0.016 0.002 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 3 0.000 0.000 0.000 0.000 {range}
+ 18 0.013 0.001 0.013 0.001 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0000 0.0000 0.4500 0.256 testimages/b191_1_9_1.img
+Thu Oct 30 12:14:21 2008 stats
+
+ 128 function calls in 0.444 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.444 0.444 <string>:1(<module>)
+ 1 0.422 0.422 0.443 0.443 OXDimage.py:145(read)
+ 1 0.000 0.000 0.000 0.000 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.444 0.444 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 4 0.000 0.000 0.000 0.000 {len}
+ 2 0.006 0.003 0.006 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 8 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 1 0.010 0.010 0.010 0.010 {range}
+
+
+0.0000 0.0000 0.5300 0.0439 0.0300 0.256 testimages/b191_1_9_1.img.bz2
+Thu Oct 30 12:14:23 2008 stats
+
+ 128 function calls in 0.538 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.538 0.538 <string>:1(<module>)
+ 1 0.424 0.424 0.510 0.510 OXDimage.py:145(read)
+ 1 0.000 0.000 0.055 0.055 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.537 0.537 openimage.py:67(openimage)
+ 1 0.000 0.000 0.027 0.027 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 4 0.000 0.000 0.000 0.000 {len}
+ 2 0.006 0.003 0.006 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 8 0.033 0.004 0.033 0.004 {method 'read' of 'bz2.BZ2File' objects}
+ 6 0.028 0.005 0.028 0.005 {method 'readline' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.026 0.009 0.026 0.009 {method 'seek' of 'bz2.BZ2File' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.001 0.000 0.001 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.014 0.014 0.014 0.014 {range}
+
+
+0.0000 0.0000 0.4600 0.0149 0.0100 0.256 testimages/b191_1_9_1.img.gz
+Thu Oct 30 12:14:24 2008 stats
+
+ 398 function calls in 0.464 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.464 0.464 <string>:1(<module>)
+ 1 0.431 0.431 0.461 0.461 OXDimage.py:145(read)
+ 1 0.000 0.000 0.001 0.001 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.002 0.001 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.002 0.001 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 22 0.001 0.000 0.006 0.000 gzip.py:208(read)
+ 6 0.000 0.000 0.000 0.000 gzip.py:240(_unread)
+ 11 0.000 0.000 0.005 0.000 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 11 0.001 0.000 0.001 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
+ 3 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 6 0.000 0.000 0.000 0.000 gzip.py:391(readline)
+ 2 0.000 0.000 0.002 0.001 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.464 0.464 openimage.py:67(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 11 0.003 0.000 0.003 0.000 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 47 0.000 0.000 0.000 0.000 {len}
+ 10 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.006 0.003 0.006 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 19 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 70 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.002 0.001 0.002 0.001 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 4 0.014 0.003 0.014 0.003 {range}
+ 14 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0000 0.0000 1.005 testimages/b191_1_9_1_uncompressed.img
+Thu Oct 30 12:14:24 2008 stats
+
+ 120 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 1 0.000 0.000 0.006 0.006 OXDimage.py:145(read)
+ 1 0.000 0.000 0.000 0.000 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 3 0.000 0.000 0.000 0.000 {len}
+ 1 0.002 0.002 0.002 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 7 0.002 0.000 0.002 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.002 0.000 0.002 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+
+
+0.0000 0.0000 0.1700 0.1178 0.1000 1.005 testimages/b191_1_9_1_uncompressed.img.bz2
+Thu Oct 30 12:14:25 2008 stats
+
+ 120 function calls in 0.179 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.179 0.179 <string>:1(<module>)
+ 1 0.000 0.000 0.143 0.143 OXDimage.py:145(read)
+ 1 0.000 0.000 0.069 0.069 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.178 0.178 openimage.py:67(openimage)
+ 1 0.001 0.001 0.036 0.036 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 3 0.000 0.000 0.000 0.000 {len}
+ 1 0.002 0.002 0.002 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 7 0.103 0.015 0.103 0.015 {method 'read' of 'bz2.BZ2File' objects}
+ 6 0.034 0.006 0.034 0.006 {method 'readline' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.034 0.011 0.034 0.011 {method 'seek' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.002 0.000 0.002 0.000 {numpy.core.multiarray.fromstring}
+
+
+0.0000 0.0000 0.0200 0.0249 0.0200 1.005 testimages/b191_1_9_1_uncompressed.img.gz
+Thu Oct 30 12:14:25 2008 stats
+
+ 433 function calls in 0.021 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.021 0.021 <string>:1(<module>)
+ 1 0.000 0.000 0.020 0.020 OXDimage.py:145(read)
+ 1 0.000 0.000 0.001 0.001 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 19 0.000 0.000 0.015 0.001 gzip.py:208(read)
+ 6 0.000 0.000 0.000 0.000 gzip.py:240(_unread)
+ 13 0.000 0.000 0.015 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.005 0.000 0.006 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
+ 3 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 6 0.000 0.000 0.000 0.000 gzip.py:391(readline)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.021 0.021 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 13 0.008 0.001 0.008 0.001 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 46 0.000 0.000 0.000 0.000 {len}
+ 8 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.002 0.002 0.002 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 111 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.002 0.000 0.002 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 3 0.000 0.000 0.000 0.000 {range}
+ 16 0.002 0.000 0.002 0.000 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0200 0.2100 8.004 testimages/corkcont2_H_0089.mccd
+Thu Oct 30 12:14:26 2008 stats
+
+ 4000 function calls in 0.169 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.004 0.004 0.169 0.169 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
+ 1 0.000 0.000 0.000 0.000 BmpImagePlugin.py:55(_accept)
+ 1 0.000 0.000 0.000 0.000 BufrStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
+ 2 0.000 0.000 0.000 0.000 GbrImagePlugin.py:18(i32)
+ 1 0.000 0.000 0.000 0.000 GbrImagePlugin.py:21(_accept)
+ 1 0.000 0.000 0.000 0.000 GifImagePlugin.py:47(_accept)
+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 Hdf5StubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 IcnsImagePlugin.py:204(<lambda>)
+ 1 0.000 0.000 0.000 0.000 IcoImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 ImImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.001 0.001 Image.py:1879(open)
+ 1 0.000 0.000 0.000 0.000 Image.py:280(preinit)
+ 1 0.000 0.000 0.000 0.000 Image.py:361(_getdecoder)
+ 1 0.000 0.000 0.000 0.000 Image.py:377(_getencoder)
+ 5 0.000 0.000 0.000 0.000 Image.py:439(__init__)
+ 1 0.000 0.000 0.000 0.000 Image.py:448(_new)
+ 4 0.000 0.000 0.000 0.000 Image.py:484(__getattr__)
+ 1 0.001 0.001 0.067 0.067 Image.py:503(tostring)
+ 3 0.000 0.000 0.000 0.000 Image.py:587(load)
+ 1 0.000 0.000 0.049 0.049 Image.py:638(convert)
+ 5 0.000 0.000 0.000 0.000 Image.py:82(isStringType)
+ 2 0.000 0.000 0.000 0.000 Image.py:91(isTupleType)
+ 1 0.001 0.001 0.014 0.014 ImageFile.py:115(load)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:219(load_prepare)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:228(load_end)
+ 2 0.000 0.000 0.000 0.000 ImageFile.py:508(_safe_read)
+ 4 0.000 0.000 0.001 0.000 ImageFile.py:63(__init__)
+ 1 0.000 0.000 0.000 0.000 ImtImagePlugin.py:37(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:110(_open)
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+ 1 0.000 0.000 0.000 0.000 JpegImagePlugin.py:231(_accept)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:28(i32)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:31(_accept)
+ 1 0.000 0.000 0.000 0.000 PcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 PngImagePlugin.py:261(_accept)
+ 1 0.000 0.000 0.000 0.000 PpmImagePlugin.py:40(_accept)
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+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:180(reset)
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+ 3 0.032 0.011 0.032 0.011 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 151 0.006 0.000 0.006 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 66 0.002 0.000 0.002 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 14 0.000 0.000 0.000 0.000 {min}
+ 1 0.033 0.033 0.033 0.033 {numpy.core.multiarray.fromstring}
+ 2 0.009 0.005 0.009 0.005 {open}
+ 192 0.000 0.000 0.000 0.000 {ord}
+ 11 0.000 0.000 0.000 0.000 {range}
+ 14 0.013 0.001 0.013 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0000 0.2000 3.471 testimages/example.mar2300
+Thu Oct 30 12:14:30 2008 stats
+
+ 222 function calls in 0.201 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.201 0.201 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:139(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:77(__init__)
+ 2 0.000 0.000 0.003 0.002 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.198 0.198 mar345image.py:21(read)
+ 1 0.000 0.000 0.001 0.001 mar345image.py:46(_readheader)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.201 0.201 openimage.py:67(openimage)
+ 1 0.000 0.000 0.003 0.003 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:74(split)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 15 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 16 0.000 0.000 0.000 0.000 {len}
+ 1 0.196 0.196 0.196 0.196 {mar345_io.unpack}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 10 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 15 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 2 0.003 0.002 0.003 0.002 {open}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.9900 0.8456 0.6700 3.471 testimages/example.mar2300.bz2
+Thu Oct 30 12:14:33 2008 stats
+
+ 227 function calls in 0.998 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.998 0.998 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:139(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:77(__init__)
+ 2 0.000 0.000 0.693 0.346 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.693 0.346 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.895 0.895 mar345image.py:21(read)
+ 1 0.000 0.000 0.001 0.001 mar345image.py:46(_readheader)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.998 0.998 openimage.py:67(openimage)
+ 1 0.000 0.000 0.103 0.103 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:74(split)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 15 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 16 0.000 0.000 0.000 0.000 {len}
+ 1 0.198 0.198 0.198 0.198 {mar345_io.unpack}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.780 0.390 0.780 0.390 {method 'read' of 'bz2.BZ2File' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 10 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 15 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 1 0.013 0.013 0.013 0.013 {method 'write' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {posix.tmpfile}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0100 0.0000 0.2800 0.1064 0.0600 3.471 testimages/example.mar2300.gz
+Thu Oct 30 12:14:34 2008 stats
+
+ 414 function calls in 0.268 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.268 0.268 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:139(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:77(__init__)
+ 2 0.000 0.000 0.065 0.033 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.065 0.033 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.000 0.000 0.051 0.026 gzip.py:208(read)
+ 14 0.000 0.000 0.051 0.004 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.009 0.001 0.014 0.001 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.267 0.267 mar345image.py:21(read)
+ 1 0.000 0.000 0.001 0.001 mar345image.py:46(_readheader)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.268 0.268 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:74(split)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 17 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 13 0.032 0.002 0.032 0.002 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 43 0.000 0.000 0.000 0.000 {len}
+ 1 0.198 0.198 0.198 0.198 {mar345_io.unpack}
+ 3 0.003 0.001 0.003 0.001 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 58 0.004 0.000 0.004 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 1 0.013 0.013 0.013 0.013 {method 'write' of 'file' objects}
+ 13 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 1 0.000 0.000 0.000 0.000 {posix.tmpfile}
+ 11 0.000 0.000 0.000 0.000 {range}
+ 15 0.006 0.000 0.006 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0000 0.0000 0.0100 0.215 testimages/face.edf
+Thu Oct 30 12:14:35 2008 stats
+
+ 119 function calls in 0.003 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.003 0.003 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.002 0.002 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.002 0.001 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.003 0.003 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 9 0.000 0.000 0.000 0.000 {len}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.002 0.001 0.002 0.001 {open}
+
+
+0.0000 0.0000 0.0000 0.0443 0.0000 0.215 testimages/face.edf.bz2
+Thu Oct 30 12:14:35 2008 stats
+
+ 119 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.004 0.004 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.004 0.002 fabioimage.py:259(_open)
+ 2 0.004 0.002 0.004 0.002 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:67(openimage)
+ 1 0.000 0.000 0.003 0.003 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 9 0.000 0.000 0.000 0.000 {len}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.003 0.001 0.003 0.001 {method 'read' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+
+
+0.0000 0.0000 0.0100 0.0373 0.0000 0.215 testimages/face.edf.gz
+Thu Oct 30 12:14:36 2008 stats
+
+ 212 function calls in 0.004 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.004 0.004 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.003 0.003 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 4 0.000 0.000 0.002 0.001 gzip.py:208(read)
+ 4 0.000 0.000 0.002 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 3 0.000 0.000 0.001 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.004 0.004 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 3 0.001 0.000 0.001 0.000 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
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+
+
+0.0000 0.0000 0.0000 0.008 testimages/face.msk
+Thu Oct 30 12:14:36 2008 stats
+
+ 82 function calls in 0.008 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
+
+0.0000 0.0000 0.0100 0.0335 0.0000 0.008 testimages/face.msk.bz2
+Thu Oct 30 12:14:36 2008 stats
+
+ 82 function calls in 0.010 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.010 0.010 <string>:1(<module>)
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+
+
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+Thu Oct 30 12:14:36 2008 stats
+
+ 171 function calls in 0.010 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+Thu Oct 30 12:14:40 2008 stats
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+ 119 function calls in 0.013 CPU seconds
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+ Ordered by: standard name
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+ ncalls tottime percall cumtime percall filename:lineno(function)
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+Thu Oct 30 12:14:40 2008 stats
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+ 119 function calls in 0.027 CPU seconds
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+ Ordered by: standard name
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+ ncalls tottime percall cumtime percall filename:lineno(function)
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+Thu Oct 30 12:14:40 2008 stats
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+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 5 0.000 0.000 0.000 0.000 {min}
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+ 1 0.004 0.004 0.004 0.004 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 7 0.008 0.001 0.008 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0000 0.0000 0.1400 0.126 testimages/fit2d_click.msk
+Thu Oct 30 12:14:41 2008 stats
+
+ 82 function calls in 0.125 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.125 0.125 <string>:1(<module>)
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+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.013 0.013 0.125 0.125 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 numeric.py:797(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.125 0.125 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
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+ 9 0.014 0.002 0.014 0.002 {method 'astype' of 'numpy.ndarray' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
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+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.097 0.097 0.097 0.097 {numpy.core.multiarray.where}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.zeros}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.1300 0.0389 0.0000 0.126 testimages/fit2d_click.msk.bz2
+Thu Oct 30 12:14:41 2008 stats
+
+ 82 function calls in 0.135 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.135 0.135 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.012 0.012 0.134 0.134 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 numeric.py:797(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.135 0.135 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
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+ 9 0.014 0.002 0.014 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
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+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.106 0.106 0.106 0.106 {numpy.core.multiarray.where}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.zeros}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.1200 0.0346 0.0000 0.126 testimages/fit2d_click.msk.gz
+Thu Oct 30 12:14:41 2008 stats
+
+ 193 function calls in 0.134 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.134 0.134 <string>:1(<module>)
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+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.001 0.001 fit2dmaskimage.py:19(_readheader)
+ 1 0.012 0.012 0.132 0.132 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
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+ 1 0.104 0.104 0.104 0.104 {numpy.core.multiarray.where}
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+
+
+0.0800 0.0700 0.1600 36.001 testimages/mb_LP_1_001.edf
+Thu Oct 30 12:14:42 2008 stats
+
+ 119 function calls in 0.164 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.006 0.006 0.164 0.164 <string>:1(<module>)
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+ 1 0.000 0.000 0.151 0.151 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
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+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
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+
+
+0.0400 0.0400 0.1600 18.000 testimages/mb_LP_1_001.img
+Thu Oct 30 12:14:42 2008 stats
+
+ 183 function calls in 0.158 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 1 0.004 0.004 0.152 0.152 adscimage.py:25(read)
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+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.002 0.002 0.155 0.155 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
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+ 19 0.022 0.001 0.022 0.001 {method 'readline' of 'file' objects}
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+
+0.0100 0.0100 3.0700 2.2536 2.1600 18.000 testimages/mb_LP_1_001.img.bz2
+Thu Oct 30 12:14:53 2008 stats
+
+ 183 function calls in 3.079 CPU seconds
+
+ Ordered by: standard name
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+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 1 0.004 0.004 3.076 3.076 openimage.py:67(openimage)
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+0.0100 0.0100 0.5100 0.4089 0.2700 18.000 testimages/mb_LP_1_001.img.gz
+Thu Oct 30 12:14:55 2008 stats
+
+ 1123 function calls in 0.519 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 37 0.009 0.000 0.392 0.011 gzip.py:208(read)
+ 19 0.004 0.000 0.004 0.000 gzip.py:240(_unread)
+ 75 0.001 0.000 0.383 0.005 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 74 0.087 0.001 0.126 0.002 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 3 0.000 0.000 0.000 0.000 gzip.py:315(close)
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+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 19 0.003 0.000 0.129 0.007 gzip.py:391(readline)
+ 3 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.003 0.003 0.516 0.516 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 3 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 74 0.243 0.003 0.243 0.003 {built-in method decompress}
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+ 239 0.000 0.000 0.000 0.000 {len}
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+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 20 0.005 0.000 0.005 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
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+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 90 0.000 0.000 0.000 0.000 {min}
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+
+
+0.0200 0.0000 0.2000 8.067 testimages/oPPA_5grains_0001.tif
+Thu Oct 30 12:14:56 2008 stats
+
+ 11340 function calls in 0.234 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
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+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
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+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.030 0.030 string.py:306(join)
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+ 1 0.007 0.007 0.230 0.230 tifimage.py:53(read)
+ 1 0.001 0.001 0.001 0.001 {PIL._imaging.new}
+ 513 0.001 0.000 0.001 0.000 {apply}
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+ 523 0.001 0.000 0.001 0.000 {isinstance}
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+ 1 0.000 0.000 0.000 0.000 {max}
+ 1290 0.001 0.000 0.001 0.000 {method 'append' of 'list' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 3 0.030 0.010 0.030 0.010 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 541 0.023 0.000 0.023 0.000 {method 'read' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 10 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 528 0.007 0.000 0.007 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.002 0.002 {method 'sort' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1024 0.001 0.000 0.001 0.000 {min}
+ 2 0.032 0.016 0.032 0.016 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 2244 0.001 0.000 0.001 0.000 {ord}
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+
+
+0.0000 0.0000 0.7100 0.4409 0.4700 8.067 testimages/oPPA_5grains_0001.tif.bz2
+Thu Oct 30 12:14:58 2008 stats
+
+ 11342 function calls in 0.722 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+Thu Oct 30 12:15:00 2008 stats
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+Thu Oct 30 12:15:01 2008 stats
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+
+0.0000 0.0000 0.0600 0.0715 0.0300 2.004 testimages/somedata_0001.mccd.gz
+Thu Oct 30 12:15:01 2008 stats
+
+ 3604 function calls in 0.073 CPU seconds
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+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
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+Thu Oct 30 12:15:01 2008 stats
+
+ 616 function calls in 0.003 CPU seconds
+
+ Ordered by: standard name
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+ 1 0.000 0.000 0.000 0.000 {PIL._imaging.new}
+ 3 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method convert}
+ 2 0.000 0.000 0.000 0.000 {built-in method decode}
+ 1 0.000 0.000 0.000 0.000 {built-in method encode}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {built-in method pixel_access}
+ 1 0.000 0.000 0.000 0.000 {built-in method setimage}
+ 1 0.000 0.000 0.000 0.000 {cmp}
+ 5 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 13 0.000 0.000 0.000 0.000 {isinstance}
+ 44 0.000 0.000 0.000 0.000 {len}
+ 1 0.000 0.000 0.000 0.000 {max}
+ 15 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 29 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 10 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 16 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 204 0.000 0.000 0.000 0.000 {ord}
+ 12 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.0000 0.0360 0.0000 0.023 testimages/testmap1_0002.tif.bz2
+Thu Oct 30 12:15:01 2008 stats
+
+ 618 function calls in 0.004 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.004 0.004 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
+ 1 0.000 0.000 0.000 0.000 BmpImagePlugin.py:55(_accept)
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+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
+ 2 0.000 0.000 0.000 0.000 GbrImagePlugin.py:18(i32)
+ 1 0.000 0.000 0.000 0.000 GbrImagePlugin.py:21(_accept)
+ 1 0.000 0.000 0.000 0.000 GifImagePlugin.py:47(_accept)
+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 Hdf5StubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 IcnsImagePlugin.py:204(<lambda>)
+ 1 0.000 0.000 0.000 0.000 IcoImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 ImImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.002 0.002 Image.py:1879(open)
+ 1 0.000 0.000 0.000 0.000 Image.py:280(preinit)
+ 2 0.000 0.000 0.000 0.000 Image.py:361(_getdecoder)
+ 1 0.000 0.000 0.000 0.000 Image.py:377(_getencoder)
+ 5 0.000 0.000 0.000 0.000 Image.py:439(__init__)
+ 1 0.000 0.000 0.000 0.000 Image.py:448(_new)
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+ 1 0.000 0.000 0.000 0.000 Image.py:503(tostring)
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+ 1 0.000 0.000 0.000 0.000 Image.py:638(convert)
+ 5 0.000 0.000 0.000 0.000 Image.py:82(isStringType)
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+ 1 0.000 0.000 0.000 0.000 ImageFile.py:115(load)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:219(load_prepare)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:228(load_end)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:49(_tilesort)
+ 4 0.000 0.000 0.000 0.000 ImageFile.py:508(_safe_read)
+ 4 0.000 0.000 0.001 0.000 ImageFile.py:63(__init__)
+ 1 0.000 0.000 0.000 0.000 ImtImagePlugin.py:37(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:62(field)
+ 1 0.000 0.000 0.000 0.000 JpegImagePlugin.py:231(_accept)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:28(i32)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:31(_accept)
+ 1 0.000 0.000 0.000 0.000 PcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 PngImagePlugin.py:261(_accept)
+ 1 0.000 0.000 0.000 0.000 PpmImagePlugin.py:40(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:157(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:168(__init__)
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+ 14 0.000 0.000 0.000 0.000 TiffImagePlugin.py:199(__getitem__)
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+ 11 0.000 0.000 0.000 0.000 TiffImagePlugin.py:215(getscalar)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:230(has_key)
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+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:521(_setup)
+ 37 0.000 0.000 0.000 0.000 TiffImagePlugin.py:64(il16)
+ 26 0.000 0.000 0.000 0.000 TiffImagePlugin.py:66(il32)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:139(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:77(__init__)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.001 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.004 0.004 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:74(split)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:306(join)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(_readheader)
+ 1 0.000 0.000 0.003 0.003 tifimage.py:53(read)
+ 1 0.000 0.000 0.000 0.000 {PIL._imaging.new}
+ 3 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method convert}
+ 2 0.000 0.000 0.000 0.000 {built-in method decode}
+ 1 0.000 0.000 0.000 0.000 {built-in method encode}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
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+ 1 0.000 0.000 0.000 0.000 {built-in method setimage}
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 1 0.000 0.000 0.000 0.000 {cmp}
+ 5 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 13 0.000 0.000 0.000 0.000 {isinstance}
+ 44 0.000 0.000 0.000 0.000 {len}
+ 1 0.000 0.000 0.000 0.000 {max}
+ 15 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'read' of 'bz2.BZ2File' objects}
+ 28 0.000 0.000 0.000 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 10 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 16 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 4 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 204 0.000 0.000 0.000 0.000 {ord}
+ 12 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.0000 0.0343 0.0000 0.023 testimages/testmap1_0002.tif.gz
+Thu Oct 30 12:15:02 2008 stats
+
+ 738 function calls in 0.005 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.005 0.005 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
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+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
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+ 1 0.000 0.000 0.000 0.000 GbrImagePlugin.py:21(_accept)
+ 1 0.000 0.000 0.000 0.000 GifImagePlugin.py:47(_accept)
+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 Hdf5StubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 IcnsImagePlugin.py:204(<lambda>)
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+ 1 0.000 0.000 0.002 0.002 Image.py:1879(open)
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+ 4 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 6 0.000 0.000 0.000 0.000 {min}
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+ 2 0.001 0.001 0.001 0.001 {open}
+ 208 0.000 0.000 0.000 0.000 {ord}
+ 12 0.000 0.000 0.000 0.000 {range}
+ 4 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
diff --git a/test/get_test_images.sh b/test/get_test_images.sh
new file mode 100644
index 0000000..aa9c120
--- /dev/null
+++ b/test/get_test_images.sh
@@ -0,0 +1,36 @@
+#!/bin/sh
+
+
+#
+#wget "http://teamsites.risoe.dk/totalcryst/File exchange/fabio_testimages.zip"
+# --http-user=username
+# --http-password=password
+
+
+wget http://downloads.sourceforge.net/fable/fabio_testimages.zip
+
+cd testimages
+
+unzip ../fabio_testimages.zip
+
+for name in $(ls *.bz2 ) ; do
+ bunzip2 -k $name
+ sleep 1
+ gzip ${name%.bz2}
+ sleep 1
+ bunzip2 -k $name
+done
+
+fit2d_12_081_i686_linux2.4.20 -nogr <<EOF
+3072
+3072
+NO
+INPUT
+ADSC
+mb_LP_1_001.img
+OUTPUT
+"KLORA"
+mb_LP_1_001.edf
+QUIT
+YES
+EOF
diff --git a/test/lapwright_benchheaders b/test/lapwright_benchheaders
new file mode 100644
index 0000000..6e13ad3
--- /dev/null
+++ b/test/lapwright_benchheaders
@@ -0,0 +1,47 @@
+ 0.000583 testimages/Cr8F8140k103.0026
+ 0.051907 testimages/Cr8F8140k103.0026.bz2
+ 0.000820 testimages/Cr8F8140k103.0026.gz
+ 0.000396 testimages/F2K_Seb_Lyso0675.edf
+ 0.100052 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.000672 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000184 testimages/GE_aSI_detector_image_1529
+ 0.071242 testimages/GE_aSI_detector_image_1529.bz2
+ 0.000594 testimages/GE_aSI_detector_image_1529.gz
+ 0.000318 testimages/b191_1_9_1.img
+ 0.073274 testimages/b191_1_9_1.img.bz2
+ 0.000767 testimages/b191_1_9_1.img.gz
+ 0.000301 testimages/b191_1_9_1_uncompressed.img
+ 0.088887 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.000809 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.003353 testimages/corkcont2_H_0089.mccd
+ 0.081050 testimages/corkcont2_H_0089.mccd.bz2
+ 0.003884 testimages/corkcont2_H_0089.mccd.gz
+ 0.000363 testimages/example.mar2300
+ 0.193586 testimages/example.mar2300.bz2
+ 0.000607 testimages/example.mar2300.gz
+ 0.000173 testimages/face.edf
+ 0.001616 testimages/face.edf.bz2
+ 0.001207 testimages/face.edf.gz
+ 0.000128 testimages/face.msk
+ 0.000726 testimages/face.msk.bz2
+ 0.000348 testimages/face.msk.gz
+ 0.000167 testimages/fit2d_click.edf
+ 0.002242 testimages/fit2d_click.edf.bz2
+ 0.009748 testimages/fit2d_click.edf.gz
+ 0.000131 testimages/fit2d_click.msk
+ 0.000441 testimages/fit2d_click.msk.bz2
+ 0.001680 testimages/fit2d_click.msk.gz
+ 0.000174 testimages/mb_LP_1_001.edf
+ 0.013777 testimages/mb_LP_1_001.img
+ 0.666265 testimages/mb_LP_1_001.img.bz2
+ 0.147505 testimages/mb_LP_1_001.img.gz
+ 0.000139 testimages/oPPA_5grains_0001.tif
+ 0.011123 testimages/oPPA_5grains_0001.tif.bz2
+ 0.001009 testimages/oPPA_5grains_0001.tif.gz
+ 0.003373 testimages/somedata_0001.mccd
+ 0.095547 testimages/somedata_0001.mccd.bz2
+ 0.003814 testimages/somedata_0001.mccd.gz
+ 0.000128 testimages/testmap1_0002.tif
+ 0.000211 testimages/testmap1_0002.tif.bz2
+ 0.000349 testimages/testmap1_0002.tif.gz
+ 0.000383 testimages/testspr.spr.gz
diff --git a/test/lapwright_benchmark b/test/lapwright_benchmark
new file mode 100644
index 0000000..aa9b7ec
--- /dev/null
+++ b/test/lapwright_benchmark
@@ -0,0 +1,54 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0000 0.0000 0.0000 0.508 testimages/Cr8F8140k103.0026
+0.0000 0.0000 0.0600 0.0363 0.0300 0.508 testimages/Cr8F8140k103.0026.bz2
+0.0000 0.0000 0.0100 0.0111 0.0100 0.508 testimages/Cr8F8140k103.0026.gz
+0.0100 0.0100 0.0200 8.003 testimages/F2K_Seb_Lyso0675.edf
+0.0100 0.0000 0.7300 0.7201 0.6900 8.003 testimages/F2K_Seb_Lyso0675.edf.bz2
+0.0100 0.0000 0.1600 0.1851 0.1500 8.003 testimages/F2K_Seb_Lyso0675.edf.gz
+0.0100 0.0100 0.0200 8.008 testimages/GE_aSI_detector_image_1529
+0.0100 0.0000 0.6200 0.6092 0.4900 8.008 testimages/GE_aSI_detector_image_1529.bz2
+0.0000 0.0100 0.1200 0.1191 0.1200 8.008 testimages/GE_aSI_detector_image_1529.gz
+0.0100 0.0000 0.4100 0.256 testimages/b191_1_9_1.img
+0.0000 0.0000 0.4700 0.0305 0.0300 0.256 testimages/b191_1_9_1.img.bz2
+0.0000 0.0000 0.4600 0.0071 0.0100 0.256 testimages/b191_1_9_1.img.gz
+0.0000 0.0000 0.0100 1.005 testimages/b191_1_9_1_uncompressed.img
+0.0000 0.0000 0.1200 0.0655 0.0600 1.005 testimages/b191_1_9_1_uncompressed.img.bz2
+0.0000 0.0000 0.0400 0.0341 0.0100 1.005 testimages/b191_1_9_1_uncompressed.img.gz
+0.0200 0.0000 0.1300 8.004 testimages/corkcont2_H_0089.mccd
+0.0000 0.0000 0.4200 0.3214 0.2900 8.004 testimages/corkcont2_H_0089.mccd.bz2
+0.0000 0.0000 0.1800 0.0977 0.0900 8.004 testimages/corkcont2_H_0089.mccd.gz
+0.0000 0.0000 0.1800 3.471 testimages/example.mar2300
+0.0100 0.0000 0.7600 0.4990 0.5800 3.471 testimages/example.mar2300.bz2
+0.0100 0.0000 0.3000 0.0672 0.0500 3.471 testimages/example.mar2300.gz
+0.0000 0.0000 0.0000 0.215 testimages/face.edf
+0.0000 0.0000 0.0000 0.0109 0.0000 0.215 testimages/face.edf.bz2
+0.0000 0.0000 0.0000 0.0098 0.0000 0.215 testimages/face.edf.gz
+0.0000 0.0000 0.0100 0.008 testimages/face.msk
+0.0000 0.0000 0.0100 0.0089 0.0000 0.008 testimages/face.msk.bz2
+0.0000 0.0000 0.0100 0.0084 0.0000 0.008 testimages/face.msk.gz
+0.0000 0.0100 0.0100 4.001 testimages/fit2d_click.edf
+0.0000 0.0000 0.0300 0.0498 0.0200 4.001 testimages/fit2d_click.edf.bz2
+0.0000 0.0000 0.0400 0.0433 0.0300 4.001 testimages/fit2d_click.edf.gz
+0.0000 0.0000 0.1100 0.126 testimages/fit2d_click.msk
+0.0000 0.0000 0.1100 0.0184 0.0000 0.126 testimages/fit2d_click.msk.bz2
+0.0000 0.0000 0.1300 0.0117 0.0000 0.126 testimages/fit2d_click.msk.gz
+0.0400 0.0400 0.0800 36.001 testimages/mb_LP_1_001.edf
+0.0200 0.0200 0.1100 18.000 testimages/mb_LP_1_001.img
+0.0100 0.0000 1.9300 1.3436 1.1800 18.000 testimages/mb_LP_1_001.img.bz2
+0.0100 0.0100 0.4200 0.3263 0.2600 18.000 testimages/mb_LP_1_001.img.gz
+0.0200 0.0000 0.1400 8.067 testimages/oPPA_5grains_0001.tif
+0.0000 0.0000 0.3800 0.2985 0.2300 8.067 testimages/oPPA_5grains_0001.tif.bz2
+0.0000 0.0000 0.1600 0.0624 0.0600 8.067 testimages/oPPA_5grains_0001.tif.gz
+0.0100 0.0000 0.0200 2.004 testimages/somedata_0001.mccd
+0.0000 0.0000 0.1800 0.1373 0.1200 2.004 testimages/somedata_0001.mccd.bz2
+0.0000 0.0000 0.0400 0.0466 0.0300 2.004 testimages/somedata_0001.mccd.gz
+0.0000 0.0000 0.0100 0.023 testimages/testmap1_0002.tif
+0.0000 0.0000 0.0000 0.0080 0.0000 0.023 testimages/testmap1_0002.tif.bz2
+0.0000 0.0000 0.0000 0.0078 0.0000 0.023 testimages/testmap1_0002.tif.gz
+0.0000 0.0000 1.0200 0.1523 0.1200 9.141 testimages/testspr.spr.gz
diff --git a/test/lintaillefer_benchHeaders b/test/lintaillefer_benchHeaders
new file mode 100644
index 0000000..c08838e
--- /dev/null
+++ b/test/lintaillefer_benchHeaders
@@ -0,0 +1,95 @@
+ 0.000329 testimages/Cr8F8140k103.0026
+ 0.037044 testimages/Cr8F8140k103.0026.bz2
+ 0.000592 testimages/Cr8F8140k103.0026.gz
+ 0.003818 testimages/F2K_Seb_Lyso0675.edf
+ 0.557174 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.086970 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000493 testimages/F2K_Seb_Lyso0675_header_only.edf
+ 0.001307 testimages/F2K_Seb_Lyso0675_header_only.edf.bz2
+ 0.000816 testimages/F2K_Seb_Lyso0675_header_only.edf.gz
+ 0.000236 testimages/GE_aSI_detector_image_1529
+ 0.051342 testimages/GE_aSI_detector_image_1529.bz2
+ 0.000785 testimages/GE_aSI_detector_image_1529.gz
+ 0.001612 testimages/MultiFrame-Frame0.edf
+ 0.176526 testimages/MultiFrame-Frame0.edf.bz2
+ 0.021154 testimages/MultiFrame-Frame0.edf.gz
+ 0.001412 testimages/MultiFrame-Frame1.edf
+ 0.176522 testimages/MultiFrame-Frame1.edf.bz2
+ 0.021324 testimages/MultiFrame-Frame1.edf.gz
+ 0.003797 testimages/MultiFrame.edf
+ 0.505238 testimages/MultiFrame.edf.bz2
+ 0.086753 testimages/MultiFrame.edf.gz
+ 0.000412 testimages/XSDataImage.edf
+ 0.003893 testimages/XSDataImage.xml
+ 0.003825 testimages/XSDataImageInv.xml
+ 0.000221 testimages/b191_1_9_1.img
+ 0.055115 testimages/b191_1_9_1.img.bz2
+ 0.000593 testimages/b191_1_9_1.img.gz
+ 0.000210 testimages/b191_1_9_1_uncompressed.img
+ 0.060150 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.000622 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.002060 testimages/corkcont2_H_0089.mccd
+ 0.056873 testimages/corkcont2_H_0089.mccd.bz2
+ 0.002520 testimages/corkcont2_H_0089.mccd.gz
+ 0.001412 testimages/edfCompressed_U16.edf
+ 0.409378 testimages/edfCompressed_U16.edf.bz2
+ 0.009362 testimages/edfCompressed_U16.edf.gz
+ 0.001355 testimages/edfGzip_U16.edf
+ 0.409779 testimages/edfGzip_U16.edf.bz2
+ 0.009243 testimages/edfGzip_U16.edf.gz
+ 0.003138 testimages/edfUncompressed_U16.edf
+ 0.461300 testimages/edfUncompressed_U16.edf.bz2
+ 0.065004 testimages/edfUncompressed_U16.edf.gz
+ 0.000304 testimages/example.mar2300
+ 0.132916 testimages/example.mar2300.bz2
+ 0.000491 testimages/example.mar2300.gz
+ 0.000294 testimages/face.edf
+ 0.002074 testimages/face.edf.bz2
+ 0.001499 testimages/face.edf.gz
+ 0.000097 testimages/face.msk
+ 0.000470 testimages/face.msk.bz2
+ 0.000302 testimages/face.msk.gz
+ 0.001673 testimages/fit2d_click.edf
+ 0.018431 testimages/fit2d_click.edf.bz2
+ 0.020730 testimages/fit2d_click.edf.gz
+ 0.000095 testimages/fit2d_click.msk
+ 0.000281 testimages/fit2d_click.msk.bz2
+ 0.001220 testimages/fit2d_click.msk.gz
+ 0.001084 testimages/i01f0001.edf
+ 0.110340 testimages/i01f0001.edf.bz2
+ 0.012220 testimages/i01f0001.edf.gz
+ 0.001402 testimages/i01f0001.kcd
+ 0.078815 testimages/i01f0001.kcd.bz2
+ 0.007362 testimages/i01f0001.kcd.gz
+ 0.000401 testimages/id13_badPadding.edf
+ 0.066293 testimages/id13_badPadding.edf.bz2
+ 0.007500 testimages/id13_badPadding.edf.gz
+ 0.000297 testimages/im0000.edf
+ 0.005363 testimages/im0000.edf.bz2
+ 0.001566 testimages/im0000.edf.gz
+ 0.000166 testimages/image.0000
+ 0.001915 testimages/image.0000.bz2
+ 0.000981 testimages/image.0000.gz
+ 0.021417 testimages/mb_LP_1_001.edf
+ 1.442814 testimages/mb_LP_1_001.edf.bz2
+ 0.267614 testimages/mb_LP_1_001.edf.gz
+ 0.011164 testimages/mb_LP_1_001.img
+ 0.395687 testimages/mb_LP_1_001.img.bz2
+ 0.067309 testimages/mb_LP_1_001.img.gz
+ 0.011211 testimages/mb_LP_1_002.img
+ 0.000093 testimages/oPPA_5grains_0001.tif
+ 0.011608 testimages/oPPA_5grains_0001.tif.bz2
+ 0.001260 testimages/oPPA_5grains_0001.tif.gz
+ 0.102151 testimages/run2_1_00148.cbf
+ 0.577272 testimages/run2_1_00148.cbf.bz2
+ 0.156771 testimages/run2_1_00148.cbf.gz
+ 0.010526 testimages/run2_1_00148.edf
+ 0.862486 testimages/run2_1_00148.edf.bz2
+ 0.118586 testimages/run2_1_00148.edf.gz
+ 0.002041 testimages/somedata_0001.mccd
+ 0.070370 testimages/somedata_0001.mccd.bz2
+ 0.002538 testimages/somedata_0001.mccd.gz
+ 0.000089 testimages/testmap1_0002.tif
+ 0.000198 testimages/testmap1_0002.tif.bz2
+ 0.000430 testimages/testmap1_0002.tif.gz
+ 0.000087 testimages/tifimagewrite_test0000.tif
diff --git a/test/profile/benchheader.py b/test/profile/benchheader.py
new file mode 100644
index 0000000..988acab
--- /dev/null
+++ b/test/profile/benchheader.py
@@ -0,0 +1,21 @@
+
+
+import timeit, os, sys
+sys.path.insert(0, os.path.abspath("../build/lib.linux-x86_64-2.6"))
+
+junk = [".svn", "testfile", "testfile.bz2", "testfile.gz"]
+
+#for fname in :
+# if fname.find("") == -1:
+# images.append(fname)
+images = [os.path.join("testimages", i) for i in os.listdir("testimages") if (i not in junk) ]
+images.sort()
+for im in images:
+ s = "ret = fabio.openimage.openheader(r\"%s\")" % (im)
+ t = timeit.Timer(s,
+ setup="import fabio.openimage")
+ print "%10.6f" % (t.timeit(10) / 10.0), im
+
+
+
+
diff --git a/test/profile/coral31_benchheaders b/test/profile/coral31_benchheaders
new file mode 100644
index 0000000..d622a64
--- /dev/null
+++ b/test/profile/coral31_benchheaders
@@ -0,0 +1,46 @@
+ 0.000857 testimages/Cr8F8140k103.0026
+ 0.046055 testimages/Cr8F8140k103.0026.bz2
+ 0.001116 testimages/Cr8F8140k103.0026.gz
+ 0.000727 testimages/F2K_Seb_Lyso0675.edf
+ 0.083457 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.000906 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000454 testimages/GE_aSI_detector_image_1529
+ 0.058213 testimages/GE_aSI_detector_image_1529.bz2
+ 0.000798 testimages/GE_aSI_detector_image_1529.gz
+ 0.000572 testimages/b191_1_9_1.img
+ 0.057766 testimages/b191_1_9_1.img.bz2
+ 0.000981 testimages/b191_1_9_1.img.gz
+ 0.000556 testimages/b191_1_9_1_uncompressed.img
+ 0.078372 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.001016 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.003505 testimages/corkcont2_H_0089.mccd
+ 0.067027 testimages/corkcont2_H_0089.mccd.bz2
+ 0.004070 testimages/corkcont2_H_0089.mccd.gz
+ 0.000617 testimages/example.mar2300
+ 0.153640 testimages/example.mar2300.bz2
+ 0.000832 testimages/example.mar2300.gz
+ 0.000430 testimages/face.edf
+ 0.001603 testimages/face.edf.bz2
+ 0.001281 testimages/face.edf.gz
+ 0.000349 testimages/face.msk
+ 0.000797 testimages/face.msk.bz2
+ 0.000507 testimages/face.msk.gz
+ 0.000431 testimages/fit2d_click.edf
+ 0.002208 testimages/fit2d_click.edf.bz2
+ 0.011531 testimages/fit2d_click.edf.gz
+ 0.000408 testimages/fit2d_click.msk
+ 0.000592 testimages/fit2d_click.msk.bz2
+ 0.002028 testimages/fit2d_click.msk.gz
+ 0.000444 testimages/mb_LP_1_001.edf
+ 0.020046 testimages/mb_LP_1_001.img
+ 0.644009 testimages/mb_LP_1_001.img.bz2
+ 0.130721 testimages/mb_LP_1_001.img.gz
+ 0.000385 testimages/oPPA_5grains_0001.tif
+ 0.011607 testimages/oPPA_5grains_0001.tif.bz2
+ 0.001579 testimages/oPPA_5grains_0001.tif.gz
+ 0.003500 testimages/somedata_0001.mccd
+ 0.078679 testimages/somedata_0001.mccd.bz2
+ 0.003825 testimages/somedata_0001.mccd.gz
+ 0.000364 testimages/testmap1_0002.tif
+ 0.000399 testimages/testmap1_0002.tif.bz2
+ 0.000536 testimages/testmap1_0002.tif.gz
diff --git a/test/profile/coral31_benchmark b/test/profile/coral31_benchmark
new file mode 100644
index 0000000..99d2622
--- /dev/null
+++ b/test/profile/coral31_benchmark
@@ -0,0 +1,53 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0000 0.0000 0.0100 0.508 testimages/Cr8F8140k103.0026
+0.0100 0.0000 0.0600 0.0358 0.0300 0.508 testimages/Cr8F8140k103.0026.bz2
+0.0000 0.0000 0.0100 0.0114 0.0100 0.508 testimages/Cr8F8140k103.0026.gz
+0.0100 0.0100 0.0300 8.003 testimages/F2K_Seb_Lyso0675.edf
+0.0000 0.0100 0.9700 0.9219 0.9200 8.003 testimages/F2K_Seb_Lyso0675.edf.bz2
+0.0000 0.0100 0.1400 0.1360 0.1200 8.003 testimages/F2K_Seb_Lyso0675.edf.gz
+0.0100 0.0200 0.0300 8.008 testimages/GE_aSI_detector_image_1529
+0.0100 0.0000 0.7700 0.6982 0.6800 8.008 testimages/GE_aSI_detector_image_1529.bz2
+0.0100 0.0000 0.1000 0.1031 0.1000 8.008 testimages/GE_aSI_detector_image_1529.gz
+0.0000 0.0000 0.3400 0.256 testimages/b191_1_9_1.img
+0.0000 0.0000 0.3800 0.0278 0.0300 0.256 testimages/b191_1_9_1.img.bz2
+0.0000 0.0000 0.3300 0.0083 0.0000 0.256 testimages/b191_1_9_1.img.gz
+0.0000 0.0000 0.0000 1.005 testimages/b191_1_9_1_uncompressed.img
+0.0000 0.0000 0.1400 0.0954 0.1000 1.005 testimages/b191_1_9_1_uncompressed.img.bz2
+0.0000 0.0000 0.0200 0.0159 0.0100 1.005 testimages/b191_1_9_1_uncompressed.img.gz
+0.0100 0.0100 0.1500 8.004 testimages/corkcont2_H_0089.mccd
+0.0100 0.0000 0.5000 0.3985 0.3700 8.004 testimages/corkcont2_H_0089.mccd.bz2
+0.0000 0.0000 0.1600 0.1114 0.0700 8.004 testimages/corkcont2_H_0089.mccd.gz
+0.0100 0.0000 0.1400 3.471 testimages/example.mar2300
+0.0000 0.0000 0.7900 0.5799 0.5500 3.471 testimages/example.mar2300.bz2
+0.0000 0.0100 0.1800 0.0671 0.0400 3.471 testimages/example.mar2300.gz
+0.0000 0.0000 0.0000 0.215 testimages/face.edf
+0.0000 0.0000 0.0100 0.0201 0.0000 0.215 testimages/face.edf.bz2
+0.0000 0.0000 0.0000 0.0183 0.0000 0.215 testimages/face.edf.gz
+0.0000 0.0000 0.0000 0.008 testimages/face.msk
+0.0000 0.0000 0.0100 0.0188 0.0000 0.008 testimages/face.msk.bz2
+0.0000 0.0100 0.0000 0.0185 0.0000 0.008 testimages/face.msk.gz
+0.0100 0.0000 0.0100 4.001 testimages/fit2d_click.edf
+0.0000 0.0000 0.0200 0.0436 0.0200 4.001 testimages/fit2d_click.edf.bz2
+0.0000 0.0000 0.0300 0.0524 0.0300 4.001 testimages/fit2d_click.edf.gz
+0.0000 0.0000 0.1100 0.126 testimages/fit2d_click.msk
+0.0000 0.0000 0.1100 0.0189 0.0100 0.126 testimages/fit2d_click.msk.bz2
+0.0000 0.0000 0.1000 0.0180 0.0000 0.126 testimages/fit2d_click.msk.gz
+0.0600 0.0700 0.1300 36.001 testimages/mb_LP_1_001.edf
+0.0400 0.0300 0.1600 18.000 testimages/mb_LP_1_001.img
+0.0100 0.0000 2.4600 2.4958 1.8100 18.000 testimages/mb_LP_1_001.img.bz2
+0.0100 0.0100 0.4100 0.2717 0.2300 18.000 testimages/mb_LP_1_001.img.gz
+0.0200 0.0100 0.1800 8.067 testimages/oPPA_5grains_0001.tif
+0.0000 0.0000 0.5100 0.5660 0.3400 8.067 testimages/oPPA_5grains_0001.tif.bz2
+0.0000 0.0000 0.1900 0.0829 0.0400 8.067 testimages/oPPA_5grains_0001.tif.gz
+0.0000 0.0000 0.0300 2.004 testimages/somedata_0001.mccd
+0.0000 0.0000 0.2600 0.2281 0.2100 2.004 testimages/somedata_0001.mccd.bz2
+0.0000 0.0000 0.0700 0.0507 0.0200 2.004 testimages/somedata_0001.mccd.gz
+0.0000 0.0000 0.0000 0.023 testimages/testmap1_0002.tif
+0.0000 0.0000 0.0000 0.0192 0.0000 0.023 testimages/testmap1_0002.tif.bz2
+0.0000 0.0000 0.0000 0.0205 0.0000 0.023 testimages/testmap1_0002.tif.gz
diff --git a/test/profile/eeepc-jonathanw_benchheaders b/test/profile/eeepc-jonathanw_benchheaders
new file mode 100644
index 0000000..32b0750
--- /dev/null
+++ b/test/profile/eeepc-jonathanw_benchheaders
@@ -0,0 +1,46 @@
+ 0.002404 testimages/Cr8F8140k103.0026
+ 0.206815 testimages/Cr8F8140k103.0026.bz2
+ 0.003507 testimages/Cr8F8140k103.0026.gz
+ 0.001946 testimages/F2K_Seb_Lyso0675.edf
+ 0.400643 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.015549 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000832 testimages/GE_aSI_detector_image_1529
+ 0.297967 testimages/GE_aSI_detector_image_1529.bz2
+ 0.002485 testimages/GE_aSI_detector_image_1529.gz
+ 0.001397 testimages/b191_1_9_1.img
+ 0.399226 testimages/b191_1_9_1.img.bz2
+ 0.010648 testimages/b191_1_9_1.img.gz
+ 0.001454 testimages/b191_1_9_1_uncompressed.img
+ 0.386724 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.003699 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.013971 testimages/corkcont2_H_0089.mccd
+ 0.453871 testimages/corkcont2_H_0089.mccd.bz2
+ 0.017732 testimages/corkcont2_H_0089.mccd.gz
+ 0.001761 testimages/example.mar2300
+ 0.723718 testimages/example.mar2300.bz2
+ 0.002948 testimages/example.mar2300.gz
+ 0.000841 testimages/face.edf
+ 0.011863 testimages/face.edf.bz2
+ 0.004975 testimages/face.edf.gz
+ 0.000680 testimages/face.msk
+ 0.002963 testimages/face.msk.bz2
+ 0.001511 testimages/face.msk.gz
+ 0.000861 testimages/fit2d_click.edf
+ 0.011688 testimages/fit2d_click.edf.bz2
+ 0.035719 testimages/fit2d_click.edf.gz
+ 0.000706 testimages/fit2d_click.msk
+ 0.001966 testimages/fit2d_click.msk.bz2
+ 0.006991 testimages/fit2d_click.msk.gz
+ 0.000755 testimages/mb_LP_1_001.edf
+ 0.058444 testimages/mb_LP_1_001.img
+ 3.408607 testimages/mb_LP_1_001.img.bz2
+ 0.488263 testimages/mb_LP_1_001.img.gz
+ 0.000593 testimages/oPPA_5grains_0001.tif
+ 0.060364 testimages/oPPA_5grains_0001.tif.bz2
+ 0.005937 testimages/oPPA_5grains_0001.tif.gz
+ 0.013839 testimages/somedata_0001.mccd
+ 0.381711 testimages/somedata_0001.mccd.bz2
+ 0.019168 testimages/somedata_0001.mccd.gz
+ 0.000574 testimages/testmap1_0002.tif
+ 0.000943 testimages/testmap1_0002.tif.bz2
+ 0.001888 testimages/testmap1_0002.tif.gz
diff --git a/test/profile/eeepc-jonathanw_benchmark b/test/profile/eeepc-jonathanw_benchmark
new file mode 100644
index 0000000..f6a09ba
--- /dev/null
+++ b/test/profile/eeepc-jonathanw_benchmark
@@ -0,0 +1,53 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0000 0.0000 0.0200 0.508 testimages/Cr8F8140k103.0026
+0.0000 0.0000 0.2700 0.1878 0.1600 0.508 testimages/Cr8F8140k103.0026.bz2
+0.0000 0.0000 0.0500 0.0430 0.0300 0.508 testimages/Cr8F8140k103.0026.gz
+0.0300 0.0300 0.0500 8.003 testimages/F2K_Seb_Lyso0675.edf
+0.0200 0.0100 3.7200 3.6164 3.4900 8.003 testimages/F2K_Seb_Lyso0675.edf.bz2
+0.0200 0.0200 0.5200 0.6880 0.5000 8.003 testimages/F2K_Seb_Lyso0675.edf.gz
+0.0300 0.0300 0.0600 8.008 testimages/GE_aSI_detector_image_1529
+0.0000 0.0200 3.1800 3.0424 2.8600 8.008 testimages/GE_aSI_detector_image_1529.bz2
+0.0100 0.0100 0.3800 0.5069 0.3500 8.008 testimages/GE_aSI_detector_image_1529.gz
+0.0000 0.0000 1.4400 0.256 testimages/b191_1_9_1.img
+0.0000 0.0100 1.7400 0.1409 0.1200 0.256 testimages/b191_1_9_1.img.bz2
+0.0000 0.0000 1.4200 0.0255 0.0200 0.256 testimages/b191_1_9_1.img.gz
+0.0000 0.0000 0.0200 1.005 testimages/b191_1_9_1_uncompressed.img
+0.0100 0.0000 0.6000 0.3607 0.3400 1.005 testimages/b191_1_9_1_uncompressed.img.bz2
+0.0100 0.0000 0.0500 0.0674 0.0400 1.005 testimages/b191_1_9_1_uncompressed.img.gz
+0.0300 0.0200 0.3400 8.004 testimages/corkcont2_H_0089.mccd
+0.0000 0.0100 1.9600 1.6794 1.5200 8.004 testimages/corkcont2_H_0089.mccd.bz2
+0.0000 0.0000 0.5700 0.4143 0.2900 8.004 testimages/corkcont2_H_0089.mccd.gz
+0.0100 0.0100 0.7000 3.471 testimages/example.mar2300
+0.0100 0.0100 3.0400 2.1931 2.0400 3.471 testimages/example.mar2300.bz2
+0.0100 0.0100 0.9000 0.2436 0.2100 3.471 testimages/example.mar2300.gz
+0.0100 0.0000 0.0000 0.215 testimages/face.edf
+0.0000 0.0000 0.0100 0.0284 0.0100 0.215 testimages/face.edf.bz2
+0.0000 0.0000 0.0000 0.0217 0.0100 0.215 testimages/face.edf.gz
+0.0000 0.0000 0.0200 0.008 testimages/face.msk
+0.0100 0.0000 0.0200 0.0181 0.0100 0.008 testimages/face.msk.bz2
+0.0000 0.0000 0.0200 0.0166 0.0000 0.008 testimages/face.msk.gz
+0.0300 0.0100 0.0400 4.001 testimages/fit2d_click.edf
+0.0000 0.0000 0.1300 0.1984 0.1100 4.001 testimages/fit2d_click.edf.bz2
+0.0000 0.0000 0.1300 0.1338 0.0900 4.001 testimages/fit2d_click.edf.gz
+0.0000 0.0000 0.3200 0.126 testimages/fit2d_click.msk
+0.0000 0.0000 0.3200 0.0212 0.0000 0.126 testimages/fit2d_click.msk.bz2
+0.0000 0.0000 0.3300 0.0201 0.0000 0.126 testimages/fit2d_click.msk.gz
+0.2000 0.1500 0.2800 36.001 testimages/mb_LP_1_001.edf
+0.0700 0.0800 0.3500 18.000 testimages/mb_LP_1_001.img
+0.0200 0.0200 10.4500 7.4476 6.8900 18.000 testimages/mb_LP_1_001.img.bz2
+0.0500 0.0200 1.5700 2.1255 0.9200 18.000 testimages/mb_LP_1_001.img.gz
+0.0400 0.0200 0.5300 8.067 testimages/oPPA_5grains_0001.tif
+0.0000 0.0000 1.9100 1.5322 1.3800 8.067 testimages/oPPA_5grains_0001.tif.bz2
+0.0000 0.0000 0.6400 0.2398 0.1800 8.067 testimages/oPPA_5grains_0001.tif.gz
+0.0000 0.0100 0.0900 2.004 testimages/somedata_0001.mccd
+0.0000 0.0000 0.9200 0.7265 0.6400 2.004 testimages/somedata_0001.mccd.bz2
+0.0000 0.0100 0.1700 0.1496 0.0900 2.004 testimages/somedata_0001.mccd.gz
+0.0000 0.0000 0.0000 0.023 testimages/testmap1_0002.tif
+0.0000 0.0000 0.0100 0.0211 0.0000 0.023 testimages/testmap1_0002.tif.bz2
+0.0100 0.0000 0.0000 0.0203 0.0000 0.023 testimages/testmap1_0002.tif.gz
diff --git a/test/profile/esrflinux1-1a_benchheaders b/test/profile/esrflinux1-1a_benchheaders
new file mode 100644
index 0000000..7b848b4
--- /dev/null
+++ b/test/profile/esrflinux1-1a_benchheaders
@@ -0,0 +1,46 @@
+ 0.041507 testimages/Cr8F8140k103.0026
+ 0.060209 testimages/Cr8F8140k103.0026.bz2
+ 0.001523 testimages/Cr8F8140k103.0026.gz
+ 0.001040 testimages/F2K_Seb_Lyso0675.edf
+ 0.115198 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.001390 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000740 testimages/GE_aSI_detector_image_1529
+ 0.082954 testimages/GE_aSI_detector_image_1529.bz2
+ 0.001530 testimages/GE_aSI_detector_image_1529.gz
+ 0.001205 testimages/b191_1_9_1.img
+ 0.082022 testimages/b191_1_9_1.img.bz2
+ 0.001455 testimages/b191_1_9_1.img.gz
+ 0.000870 testimages/b191_1_9_1_uncompressed.img
+ 0.107474 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.002650 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.007094 testimages/corkcont2_H_0089.mccd
+ 0.135271 testimages/corkcont2_H_0089.mccd.bz2
+ 0.006231 testimages/corkcont2_H_0089.mccd.gz
+ 0.041302 testimages/example.mar2300
+ 0.215028 testimages/example.mar2300.bz2
+ 0.001293 testimages/example.mar2300.gz
+ 0.000765 testimages/face.edf
+ 0.002466 testimages/face.edf.bz2
+ 0.002021 testimages/face.edf.gz
+ 0.000607 testimages/face.msk
+ 0.041250 testimages/face.msk.bz2
+ 0.000841 testimages/face.msk.gz
+ 0.000759 testimages/fit2d_click.edf
+ 0.003282 testimages/fit2d_click.edf.bz2
+ 0.017603 testimages/fit2d_click.edf.gz
+ 0.000693 testimages/fit2d_click.msk
+ 0.000938 testimages/fit2d_click.msk.bz2
+ 0.003037 testimages/fit2d_click.msk.gz
+ 0.000748 testimages/mb_LP_1_001.edf
+ 0.028433 testimages/mb_LP_1_001.img
+ 0.835932 testimages/mb_LP_1_001.img.bz2
+ 0.171870 testimages/mb_LP_1_001.img.gz
+ 0.000714 testimages/oPPA_5grains_0001.tif
+ 0.031276 testimages/oPPA_5grains_0001.tif.bz2
+ 0.003840 testimages/oPPA_5grains_0001.tif.gz
+ 0.005126 testimages/somedata_0001.mccd
+ 0.110826 testimages/somedata_0001.mccd.bz2
+ 0.006386 testimages/somedata_0001.mccd.gz
+ 0.003645 testimages/testmap1_0002.tif
+ 0.001334 testimages/testmap1_0002.tif.bz2
+ 0.001180 testimages/testmap1_0002.tif.gz
diff --git a/test/profile/esrflinux1-1a_benchmark b/test/profile/esrflinux1-1a_benchmark
new file mode 100644
index 0000000..858b59e
--- /dev/null
+++ b/test/profile/esrflinux1-1a_benchmark
@@ -0,0 +1,3563 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0000 0.0000 0.0200 0.508 testimages/Cr8F8140k103.0026
+Thu Oct 30 12:14:08 2008 stats
+
+ 637 function calls in 0.008 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.008 0.008 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.001 0.001 0.001 0.001 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.007 0.007 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.008 0.008 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.003 0.003 readbytestream.py:27(readbytestream)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 6 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.0800 0.0530 0.0400 0.508 testimages/Cr8F8140k103.0026.bz2
+Thu Oct 30 12:14:08 2008 stats
+
+ 637 function calls in 0.079 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.079 0.079 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.001 0.001 0.030 0.030 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.049 0.049 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.079 0.079 openimage.py:67(openimage)
+ 1 0.000 0.000 0.030 0.030 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.015 0.015 readbytestream.py:27(readbytestream)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 6 0.071 0.012 0.071 0.012 {method 'read' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'bz2.BZ2File' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tell' of 'bz2.BZ2File' objects}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.fromstring}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0100 0.0200 0.0182 0.0100 0.508 testimages/Cr8F8140k103.0026.gz
+Thu Oct 30 12:14:09 2008 stats
+
+ 818 function calls in 0.019 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.019 0.019 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.001 0.001 0.002 0.002 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.017 0.017 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 7 0.001 0.000 0.012 0.002 gzip.py:208(read)
+ 12 0.000 0.000 0.011 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 12 0.003 0.000 0.003 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:360(tell)
+ 1 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.019 0.019 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.012 0.012 readbytestream.py:27(readbytestream)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 12 0.006 0.001 0.006 0.001 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 27 0.000 0.000 0.000 0.000 {len}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 58 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 12 0.000 0.000 0.000 0.000 {min}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 2 0.000 0.000 0.000 0.000 {range}
+ 14 0.001 0.000 0.001 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0200 0.0200 8.003 testimages/F2K_Seb_Lyso0675.edf
+Thu Oct 30 12:14:09 2008 stats
+
+ 624 function calls in 0.034 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.034 0.034 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.001 0.001 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.031 0.031 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.032 0.032 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 12 0.000 0.000 0.000 0.000 {len}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 8 0.015 0.002 0.015 0.002 {method 'read' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.015 0.015 0.015 0.015 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+
+
+0.0100 0.0000 1.1700 1.1390 1.0800 8.003 testimages/F2K_Seb_Lyso0675.edf.bz2
+Thu Oct 30 12:14:13 2008 stats
+
+ 624 function calls in 1.164 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 1.164 1.164 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.001 0.001 0.058 0.058 edfimage.py:55(_readheader)
+ 1 0.000 0.000 1.104 1.104 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.002 0.001 fabioimage.py:259(_open)
+ 2 0.001 0.001 0.001 0.001 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 1.163 1.163 openimage.py:67(openimage)
+ 1 0.001 0.001 0.058 0.058 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 12 0.000 0.000 0.000 0.000 {len}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 8 1.142 0.143 1.142 0.143 {method 'read' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.015 0.015 0.015 0.015 {numpy.core.multiarray.fromstring}
+
+
+0.0100 0.0100 0.1900 0.6054 0.1700 8.003 testimages/F2K_Seb_Lyso0675.edf.gz
+Thu Oct 30 12:14:15 2008 stats
+
+ 845 function calls in 0.595 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.595 0.595 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.001 0.001 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.590 0.590 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.401 0.200 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.401 0.200 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 8 0.002 0.000 0.174 0.022 gzip.py:208(read)
+ 17 0.000 0.000 0.172 0.010 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 16 0.041 0.003 0.054 0.003 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.400 0.200 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.593 0.593 openimage.py:67(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 16 0.108 0.007 0.108 0.007 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 45 0.000 0.000 0.000 0.000 {len}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 68 0.009 0.000 0.009 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.015 0.015 0.015 0.015 {numpy.core.multiarray.fromstring}
+ 2 0.400 0.200 0.400 0.200 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 18 0.013 0.001 0.013 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0200 0.0400 8.008 testimages/GE_aSI_detector_image_1529
+Thu Oct 30 12:14:16 2008 stats
+
+ 87 function calls in 0.434 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.434 0.434 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 GEimage.py:29(_readheader)
+ 1 0.001 0.001 0.031 0.031 GEimage.py:460(read)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.401 0.201 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.432 0.432 openimage.py:67(openimage)
+ 1 0.000 0.000 0.401 0.401 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 21 0.015 0.001 0.015 0.001 {method 'read' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 9 0.015 0.002 0.015 0.002 {numpy.core.multiarray.fromstring}
+ 2 0.401 0.201 0.401 0.201 {open}
+
+
+0.0100 0.0000 0.9400 0.8904 0.8400 8.008 testimages/GE_aSI_detector_image_1529.bz2
+Thu Oct 30 12:14:19 2008 stats
+
+ 87 function calls in 0.947 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.947 0.947 <string>:1(<module>)
+ 1 0.000 0.000 0.040 0.040 GEimage.py:29(_readheader)
+ 1 0.002 0.002 0.904 0.904 GEimage.py:460(read)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.945 0.945 openimage.py:67(openimage)
+ 1 0.001 0.001 0.041 0.041 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 21 0.885 0.042 0.885 0.042 {method 'read' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.040 0.013 0.040 0.013 {method 'seek' of 'bz2.BZ2File' objects}
+ 9 0.016 0.002 0.016 0.002 {numpy.core.multiarray.fromstring}
+
+
+0.0000 0.0100 0.1500 0.1368 0.1200 8.008 testimages/GE_aSI_detector_image_1529.gz
+Thu Oct 30 12:14:20 2008 stats
+
+ 365 function calls in 0.147 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.147 0.147 <string>:1(<module>)
+ 1 0.000 0.000 0.001 0.001 GEimage.py:29(_readheader)
+ 1 0.002 0.002 0.144 0.144 GEimage.py:460(read)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 32 0.002 0.000 0.127 0.004 gzip.py:208(read)
+ 15 0.000 0.000 0.125 0.008 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 15 0.041 0.003 0.054 0.004 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
+ 3 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.145 0.145 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 15 0.066 0.004 0.066 0.004 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 33 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 110 0.005 0.000 0.005 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 15 0.000 0.000 0.000 0.000 {min}
+ 9 0.016 0.002 0.016 0.002 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 3 0.000 0.000 0.000 0.000 {range}
+ 18 0.013 0.001 0.013 0.001 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0000 0.0000 0.4500 0.256 testimages/b191_1_9_1.img
+Thu Oct 30 12:14:21 2008 stats
+
+ 128 function calls in 0.444 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.444 0.444 <string>:1(<module>)
+ 1 0.422 0.422 0.443 0.443 OXDimage.py:145(read)
+ 1 0.000 0.000 0.000 0.000 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.444 0.444 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 4 0.000 0.000 0.000 0.000 {len}
+ 2 0.006 0.003 0.006 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 8 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 1 0.010 0.010 0.010 0.010 {range}
+
+
+0.0000 0.0000 0.5300 0.0439 0.0300 0.256 testimages/b191_1_9_1.img.bz2
+Thu Oct 30 12:14:23 2008 stats
+
+ 128 function calls in 0.538 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.538 0.538 <string>:1(<module>)
+ 1 0.424 0.424 0.510 0.510 OXDimage.py:145(read)
+ 1 0.000 0.000 0.055 0.055 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.537 0.537 openimage.py:67(openimage)
+ 1 0.000 0.000 0.027 0.027 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 4 0.000 0.000 0.000 0.000 {len}
+ 2 0.006 0.003 0.006 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 8 0.033 0.004 0.033 0.004 {method 'read' of 'bz2.BZ2File' objects}
+ 6 0.028 0.005 0.028 0.005 {method 'readline' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.026 0.009 0.026 0.009 {method 'seek' of 'bz2.BZ2File' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.001 0.000 0.001 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.014 0.014 0.014 0.014 {range}
+
+
+0.0000 0.0000 0.4600 0.0149 0.0100 0.256 testimages/b191_1_9_1.img.gz
+Thu Oct 30 12:14:24 2008 stats
+
+ 398 function calls in 0.464 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.464 0.464 <string>:1(<module>)
+ 1 0.431 0.431 0.461 0.461 OXDimage.py:145(read)
+ 1 0.000 0.000 0.001 0.001 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.002 0.001 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.002 0.001 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 22 0.001 0.000 0.006 0.000 gzip.py:208(read)
+ 6 0.000 0.000 0.000 0.000 gzip.py:240(_unread)
+ 11 0.000 0.000 0.005 0.000 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 11 0.001 0.000 0.001 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
+ 3 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 6 0.000 0.000 0.000 0.000 gzip.py:391(readline)
+ 2 0.000 0.000 0.002 0.001 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.464 0.464 openimage.py:67(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 11 0.003 0.000 0.003 0.000 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 47 0.000 0.000 0.000 0.000 {len}
+ 10 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.006 0.003 0.006 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 19 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 70 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.002 0.001 0.002 0.001 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 4 0.014 0.003 0.014 0.003 {range}
+ 14 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0000 0.0000 1.005 testimages/b191_1_9_1_uncompressed.img
+Thu Oct 30 12:14:24 2008 stats
+
+ 120 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 1 0.000 0.000 0.006 0.006 OXDimage.py:145(read)
+ 1 0.000 0.000 0.000 0.000 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 3 0.000 0.000 0.000 0.000 {len}
+ 1 0.002 0.002 0.002 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 7 0.002 0.000 0.002 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.002 0.000 0.002 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+
+
+0.0000 0.0000 0.1700 0.1178 0.1000 1.005 testimages/b191_1_9_1_uncompressed.img.bz2
+Thu Oct 30 12:14:25 2008 stats
+
+ 120 function calls in 0.179 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.179 0.179 <string>:1(<module>)
+ 1 0.000 0.000 0.143 0.143 OXDimage.py:145(read)
+ 1 0.000 0.000 0.069 0.069 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.178 0.178 openimage.py:67(openimage)
+ 1 0.001 0.001 0.036 0.036 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 3 0.000 0.000 0.000 0.000 {len}
+ 1 0.002 0.002 0.002 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 7 0.103 0.015 0.103 0.015 {method 'read' of 'bz2.BZ2File' objects}
+ 6 0.034 0.006 0.034 0.006 {method 'readline' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.034 0.011 0.034 0.011 {method 'seek' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.002 0.000 0.002 0.000 {numpy.core.multiarray.fromstring}
+
+
+0.0000 0.0000 0.0200 0.0249 0.0200 1.005 testimages/b191_1_9_1_uncompressed.img.gz
+Thu Oct 30 12:14:25 2008 stats
+
+ 433 function calls in 0.021 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.021 0.021 <string>:1(<module>)
+ 1 0.000 0.000 0.020 0.020 OXDimage.py:145(read)
+ 1 0.000 0.000 0.001 0.001 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 19 0.000 0.000 0.015 0.001 gzip.py:208(read)
+ 6 0.000 0.000 0.000 0.000 gzip.py:240(_unread)
+ 13 0.000 0.000 0.015 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.005 0.000 0.006 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
+ 3 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 6 0.000 0.000 0.000 0.000 gzip.py:391(readline)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.021 0.021 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 13 0.008 0.001 0.008 0.001 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 46 0.000 0.000 0.000 0.000 {len}
+ 8 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.002 0.002 0.002 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 111 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.002 0.000 0.002 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 3 0.000 0.000 0.000 0.000 {range}
+ 16 0.002 0.000 0.002 0.000 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0200 0.2100 8.004 testimages/corkcont2_H_0089.mccd
+Thu Oct 30 12:14:26 2008 stats
+
+ 4000 function calls in 0.169 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.004 0.004 0.169 0.169 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
+ 1 0.000 0.000 0.000 0.000 BmpImagePlugin.py:55(_accept)
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+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
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+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
+ 2 0.000 0.000 0.000 0.000 GbrImagePlugin.py:18(i32)
+ 1 0.000 0.000 0.000 0.000 GbrImagePlugin.py:21(_accept)
+ 1 0.000 0.000 0.000 0.000 GifImagePlugin.py:47(_accept)
+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 Hdf5StubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 IcnsImagePlugin.py:204(<lambda>)
+ 1 0.000 0.000 0.000 0.000 IcoImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 ImImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.001 0.001 Image.py:1879(open)
+ 1 0.000 0.000 0.000 0.000 Image.py:280(preinit)
+ 1 0.000 0.000 0.000 0.000 Image.py:361(_getdecoder)
+ 1 0.000 0.000 0.000 0.000 Image.py:377(_getencoder)
+ 5 0.000 0.000 0.000 0.000 Image.py:439(__init__)
+ 1 0.000 0.000 0.000 0.000 Image.py:448(_new)
+ 4 0.000 0.000 0.000 0.000 Image.py:484(__getattr__)
+ 1 0.001 0.001 0.067 0.067 Image.py:503(tostring)
+ 3 0.000 0.000 0.000 0.000 Image.py:587(load)
+ 1 0.000 0.000 0.049 0.049 Image.py:638(convert)
+ 5 0.000 0.000 0.000 0.000 Image.py:82(isStringType)
+ 2 0.000 0.000 0.000 0.000 Image.py:91(isTupleType)
+ 1 0.001 0.001 0.014 0.014 ImageFile.py:115(load)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:219(load_prepare)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:228(load_end)
+ 2 0.000 0.000 0.000 0.000 ImageFile.py:508(_safe_read)
+ 4 0.000 0.000 0.001 0.000 ImageFile.py:63(__init__)
+ 1 0.000 0.000 0.000 0.000 ImtImagePlugin.py:37(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:110(_open)
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+ 1 0.000 0.000 0.000 0.000 JpegImagePlugin.py:231(_accept)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:28(i32)
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+ 12 0.000 0.000 0.000 0.000 {isinstance}
+ 65 0.000 0.000 0.000 0.000 {len}
+ 1 0.000 0.000 0.000 0.000 {max}
+ 421 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2523 0.001 0.000 0.001 0.000 {method 'has_key' of 'dict' objects}
+ 3 0.032 0.011 0.032 0.011 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 151 0.006 0.000 0.006 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 66 0.002 0.000 0.002 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 14 0.000 0.000 0.000 0.000 {min}
+ 1 0.033 0.033 0.033 0.033 {numpy.core.multiarray.fromstring}
+ 2 0.009 0.005 0.009 0.005 {open}
+ 192 0.000 0.000 0.000 0.000 {ord}
+ 11 0.000 0.000 0.000 0.000 {range}
+ 14 0.013 0.001 0.013 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0000 0.2000 3.471 testimages/example.mar2300
+Thu Oct 30 12:14:30 2008 stats
+
+ 222 function calls in 0.201 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.201 0.201 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:139(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:77(__init__)
+ 2 0.000 0.000 0.003 0.002 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.198 0.198 mar345image.py:21(read)
+ 1 0.000 0.000 0.001 0.001 mar345image.py:46(_readheader)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.201 0.201 openimage.py:67(openimage)
+ 1 0.000 0.000 0.003 0.003 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:74(split)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 15 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 16 0.000 0.000 0.000 0.000 {len}
+ 1 0.196 0.196 0.196 0.196 {mar345_io.unpack}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 10 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 15 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 2 0.003 0.002 0.003 0.002 {open}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.9900 0.8456 0.6700 3.471 testimages/example.mar2300.bz2
+Thu Oct 30 12:14:33 2008 stats
+
+ 227 function calls in 0.998 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.998 0.998 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:139(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:77(__init__)
+ 2 0.000 0.000 0.693 0.346 fabioimage.py:259(_open)
+ 2 0.001 0.000 0.693 0.346 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.895 0.895 mar345image.py:21(read)
+ 1 0.000 0.000 0.001 0.001 mar345image.py:46(_readheader)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.998 0.998 openimage.py:67(openimage)
+ 1 0.000 0.000 0.103 0.103 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:74(split)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 15 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 16 0.000 0.000 0.000 0.000 {len}
+ 1 0.198 0.198 0.198 0.198 {mar345_io.unpack}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.780 0.390 0.780 0.390 {method 'read' of 'bz2.BZ2File' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 10 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 15 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 1 0.013 0.013 0.013 0.013 {method 'write' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {posix.tmpfile}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0100 0.0000 0.2800 0.1064 0.0600 3.471 testimages/example.mar2300.gz
+Thu Oct 30 12:14:34 2008 stats
+
+ 414 function calls in 0.268 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.268 0.268 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:139(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:77(__init__)
+ 2 0.000 0.000 0.065 0.033 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.065 0.033 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.000 0.000 0.051 0.026 gzip.py:208(read)
+ 14 0.000 0.000 0.051 0.004 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.009 0.001 0.014 0.001 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.267 0.267 mar345image.py:21(read)
+ 1 0.000 0.000 0.001 0.001 mar345image.py:46(_readheader)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.268 0.268 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:74(split)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 17 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 13 0.032 0.002 0.032 0.002 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 43 0.000 0.000 0.000 0.000 {len}
+ 1 0.198 0.198 0.198 0.198 {mar345_io.unpack}
+ 3 0.003 0.001 0.003 0.001 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 58 0.004 0.000 0.004 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 1 0.013 0.013 0.013 0.013 {method 'write' of 'file' objects}
+ 13 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 1 0.000 0.000 0.000 0.000 {posix.tmpfile}
+ 11 0.000 0.000 0.000 0.000 {range}
+ 15 0.006 0.000 0.006 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0000 0.0000 0.0100 0.215 testimages/face.edf
+Thu Oct 30 12:14:35 2008 stats
+
+ 119 function calls in 0.003 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.003 0.003 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.002 0.002 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.002 0.001 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.003 0.003 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 9 0.000 0.000 0.000 0.000 {len}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.002 0.001 0.002 0.001 {open}
+
+
+0.0000 0.0000 0.0000 0.0443 0.0000 0.215 testimages/face.edf.bz2
+Thu Oct 30 12:14:35 2008 stats
+
+ 119 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.004 0.004 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.004 0.002 fabioimage.py:259(_open)
+ 2 0.004 0.002 0.004 0.002 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:67(openimage)
+ 1 0.000 0.000 0.003 0.003 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 9 0.000 0.000 0.000 0.000 {len}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.003 0.001 0.003 0.001 {method 'read' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+
+
+0.0000 0.0000 0.0100 0.0373 0.0000 0.215 testimages/face.edf.gz
+Thu Oct 30 12:14:36 2008 stats
+
+ 212 function calls in 0.004 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.004 0.004 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.003 0.003 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 4 0.000 0.000 0.002 0.001 gzip.py:208(read)
+ 4 0.000 0.000 0.002 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 3 0.000 0.000 0.001 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
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+Thu Oct 30 12:14:36 2008 stats
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+ 82 function calls in 0.008 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
+
+0.0000 0.0000 0.0100 0.0335 0.0000 0.008 testimages/face.msk.bz2
+Thu Oct 30 12:14:36 2008 stats
+
+ 82 function calls in 0.010 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.010 0.010 <string>:1(<module>)
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+
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+Thu Oct 30 12:14:36 2008 stats
+
+ 171 function calls in 0.010 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+Thu Oct 30 12:14:40 2008 stats
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+ 119 function calls in 0.013 CPU seconds
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+ Ordered by: standard name
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+ ncalls tottime percall cumtime percall filename:lineno(function)
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+Thu Oct 30 12:14:40 2008 stats
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+ 119 function calls in 0.027 CPU seconds
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+ ncalls tottime percall cumtime percall filename:lineno(function)
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+Thu Oct 30 12:14:40 2008 stats
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+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.053 0.053 openimage.py:67(openimage)
+ 1 0.000 0.000 0.007 0.007 openimage.py:81(_openimage)
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+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
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+ 4 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
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+ 7 0.008 0.001 0.008 0.001 {zlib.crc32}
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+
+
+0.0000 0.0000 0.1400 0.126 testimages/fit2d_click.msk
+Thu Oct 30 12:14:41 2008 stats
+
+ 82 function calls in 0.125 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.125 0.125 <string>:1(<module>)
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+ 1 0.013 0.013 0.125 0.125 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 numeric.py:797(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.125 0.125 openimage.py:67(openimage)
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+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
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+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.097 0.097 0.097 0.097 {numpy.core.multiarray.where}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.zeros}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.1300 0.0389 0.0000 0.126 testimages/fit2d_click.msk.bz2
+Thu Oct 30 12:14:41 2008 stats
+
+ 82 function calls in 0.135 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.135 0.135 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:62(getnum)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.012 0.012 0.134 0.134 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 numeric.py:797(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.135 0.135 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
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+ 9 0.014 0.002 0.014 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
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+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
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+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.106 0.106 0.106 0.106 {numpy.core.multiarray.where}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.zeros}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.1200 0.0346 0.0000 0.126 testimages/fit2d_click.msk.gz
+Thu Oct 30 12:14:41 2008 stats
+
+ 193 function calls in 0.134 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.134 0.134 <string>:1(<module>)
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+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
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+ 1 0.012 0.012 0.132 0.132 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
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+
+
+0.0800 0.0700 0.1600 36.001 testimages/mb_LP_1_001.edf
+Thu Oct 30 12:14:42 2008 stats
+
+ 119 function calls in 0.164 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.006 0.006 0.164 0.164 <string>:1(<module>)
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+ 1 0.000 0.000 0.151 0.151 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
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+ 1 0.079 0.079 0.079 0.079 {numpy.core.multiarray.fromstring}
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+
+
+0.0400 0.0400 0.1600 18.000 testimages/mb_LP_1_001.img
+Thu Oct 30 12:14:42 2008 stats
+
+ 183 function calls in 0.158 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.003 0.003 0.158 0.158 <string>:1(<module>)
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+ 1 0.004 0.004 0.152 0.152 adscimage.py:25(read)
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+ 1 0.002 0.002 0.155 0.155 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
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+ 2 0.034 0.017 0.034 0.017 {method 'read' of 'file' objects}
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+
+
+0.0100 0.0100 3.0700 2.2536 2.1600 18.000 testimages/mb_LP_1_001.img.bz2
+Thu Oct 30 12:14:53 2008 stats
+
+ 183 function calls in 3.079 CPU seconds
+
+ Ordered by: standard name
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+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 1 0.004 0.004 3.076 3.076 openimage.py:67(openimage)
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+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 2.149 1.075 2.149 1.075 {method 'read' of 'bz2.BZ2File' objects}
+ 19 0.782 0.041 0.782 0.041 {method 'readline' of 'bz2.BZ2File' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.039 0.039 0.039 0.039 {method 'seek' of 'bz2.BZ2File' objects}
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+ 1 0.036 0.036 0.036 0.036 {numpy.core.multiarray.fromstring}
+
+
+0.0100 0.0100 0.5100 0.4089 0.2700 18.000 testimages/mb_LP_1_001.img.gz
+Thu Oct 30 12:14:55 2008 stats
+
+ 1123 function calls in 0.519 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.003 0.003 0.519 0.519 <string>:1(<module>)
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+ 1 0.003 0.003 0.512 0.512 adscimage.py:25(read)
+ 1 0.000 0.000 0.129 0.129 adscimage.py:71(_readheader)
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+ 3 0.000 0.000 0.001 0.000 fabioimage.py:288(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 37 0.009 0.000 0.392 0.011 gzip.py:208(read)
+ 19 0.004 0.000 0.004 0.000 gzip.py:240(_unread)
+ 75 0.001 0.000 0.383 0.005 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 74 0.087 0.001 0.126 0.002 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 3 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 3 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 19 0.003 0.000 0.129 0.007 gzip.py:391(readline)
+ 3 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.003 0.003 0.516 0.516 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 3 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 74 0.243 0.003 0.243 0.003 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
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+ 239 0.000 0.000 0.000 0.000 {len}
+ 51 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.062 0.062 0.062 0.062 {method 'byteswap' of 'numpy.ndarray' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 38 0.005 0.000 0.005 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 20 0.005 0.000 0.005 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 136 0.012 0.000 0.012 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 90 0.000 0.000 0.000 0.000 {min}
+ 1 0.036 0.036 0.036 0.036 {numpy.core.multiarray.fromstring}
+ 3 0.001 0.000 0.001 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 77 0.039 0.001 0.039 0.001 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0200 0.0000 0.2000 8.067 testimages/oPPA_5grains_0001.tif
+Thu Oct 30 12:14:56 2008 stats
+
+ 11340 function calls in 0.234 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.005 0.005 0.236 0.236 <string>:1(<module>)
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+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
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+ 1 0.000 0.000 0.000 0.000 __init__.py:77(__init__)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:187(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:259(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:83(reshape)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.231 0.231 openimage.py:67(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:81(_openimage)
+ 2 0.000 0.000 0.000 0.000 posixpath.py:74(split)
+ 4 0.000 0.000 0.000 0.000 posixpath.py:89(splitext)
+ 1 0.000 0.000 0.000 0.000 re.py:178(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:219(_compile)
+ 1 0.000 0.000 0.030 0.030 string.py:306(join)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(_readheader)
+ 1 0.007 0.007 0.230 0.230 tifimage.py:53(read)
+ 1 0.001 0.001 0.001 0.001 {PIL._imaging.new}
+ 513 0.001 0.000 0.001 0.000 {apply}
+ 1 0.022 0.022 0.022 0.022 {built-in method convert}
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+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 523 0.001 0.000 0.001 0.000 {isinstance}
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+ 1 0.000 0.000 0.000 0.000 {max}
+ 1290 0.001 0.000 0.001 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 3 0.030 0.010 0.030 0.010 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 541 0.023 0.000 0.023 0.000 {method 'read' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 528 0.007 0.000 0.007 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.002 0.002 {method 'sort' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1024 0.001 0.000 0.001 0.000 {min}
+ 2 0.032 0.016 0.032 0.016 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 2244 0.001 0.000 0.001 0.000 {ord}
+ 12 0.000 0.000 0.000 0.000 {range}
+
+
+0.0000 0.0000 0.7100 0.4409 0.4700 8.067 testimages/oPPA_5grains_0001.tif.bz2
+Thu Oct 30 12:14:58 2008 stats
+
+ 11342 function calls in 0.722 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+Thu Oct 30 12:14:59 2008 stats
+
+ 11494 function calls in 0.276 CPU seconds
+
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+Thu Oct 30 12:15:00 2008 stats
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+
+0.0000 0.0000 0.0600 0.0715 0.0300 2.004 testimages/somedata_0001.mccd.gz
+Thu Oct 30 12:15:01 2008 stats
+
+ 3604 function calls in 0.073 CPU seconds
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+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
+
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+Thu Oct 30 12:15:01 2008 stats
+
+ 616 function calls in 0.003 CPU seconds
+
+ Ordered by: standard name
+
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+ 12 0.000 0.000 0.000 0.000 {range}
+ 4 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
diff --git a/test/profile/get_test_images.sh b/test/profile/get_test_images.sh
new file mode 100644
index 0000000..aa9c120
--- /dev/null
+++ b/test/profile/get_test_images.sh
@@ -0,0 +1,36 @@
+#!/bin/sh
+
+
+#
+#wget "http://teamsites.risoe.dk/totalcryst/File exchange/fabio_testimages.zip"
+# --http-user=username
+# --http-password=password
+
+
+wget http://downloads.sourceforge.net/fable/fabio_testimages.zip
+
+cd testimages
+
+unzip ../fabio_testimages.zip
+
+for name in $(ls *.bz2 ) ; do
+ bunzip2 -k $name
+ sleep 1
+ gzip ${name%.bz2}
+ sleep 1
+ bunzip2 -k $name
+done
+
+fit2d_12_081_i686_linux2.4.20 -nogr <<EOF
+3072
+3072
+NO
+INPUT
+ADSC
+mb_LP_1_001.img
+OUTPUT
+"KLORA"
+mb_LP_1_001.edf
+QUIT
+YES
+EOF
diff --git a/test/profile/lapwright_benchheaders b/test/profile/lapwright_benchheaders
new file mode 100644
index 0000000..6e13ad3
--- /dev/null
+++ b/test/profile/lapwright_benchheaders
@@ -0,0 +1,47 @@
+ 0.000583 testimages/Cr8F8140k103.0026
+ 0.051907 testimages/Cr8F8140k103.0026.bz2
+ 0.000820 testimages/Cr8F8140k103.0026.gz
+ 0.000396 testimages/F2K_Seb_Lyso0675.edf
+ 0.100052 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.000672 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000184 testimages/GE_aSI_detector_image_1529
+ 0.071242 testimages/GE_aSI_detector_image_1529.bz2
+ 0.000594 testimages/GE_aSI_detector_image_1529.gz
+ 0.000318 testimages/b191_1_9_1.img
+ 0.073274 testimages/b191_1_9_1.img.bz2
+ 0.000767 testimages/b191_1_9_1.img.gz
+ 0.000301 testimages/b191_1_9_1_uncompressed.img
+ 0.088887 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.000809 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.003353 testimages/corkcont2_H_0089.mccd
+ 0.081050 testimages/corkcont2_H_0089.mccd.bz2
+ 0.003884 testimages/corkcont2_H_0089.mccd.gz
+ 0.000363 testimages/example.mar2300
+ 0.193586 testimages/example.mar2300.bz2
+ 0.000607 testimages/example.mar2300.gz
+ 0.000173 testimages/face.edf
+ 0.001616 testimages/face.edf.bz2
+ 0.001207 testimages/face.edf.gz
+ 0.000128 testimages/face.msk
+ 0.000726 testimages/face.msk.bz2
+ 0.000348 testimages/face.msk.gz
+ 0.000167 testimages/fit2d_click.edf
+ 0.002242 testimages/fit2d_click.edf.bz2
+ 0.009748 testimages/fit2d_click.edf.gz
+ 0.000131 testimages/fit2d_click.msk
+ 0.000441 testimages/fit2d_click.msk.bz2
+ 0.001680 testimages/fit2d_click.msk.gz
+ 0.000174 testimages/mb_LP_1_001.edf
+ 0.013777 testimages/mb_LP_1_001.img
+ 0.666265 testimages/mb_LP_1_001.img.bz2
+ 0.147505 testimages/mb_LP_1_001.img.gz
+ 0.000139 testimages/oPPA_5grains_0001.tif
+ 0.011123 testimages/oPPA_5grains_0001.tif.bz2
+ 0.001009 testimages/oPPA_5grains_0001.tif.gz
+ 0.003373 testimages/somedata_0001.mccd
+ 0.095547 testimages/somedata_0001.mccd.bz2
+ 0.003814 testimages/somedata_0001.mccd.gz
+ 0.000128 testimages/testmap1_0002.tif
+ 0.000211 testimages/testmap1_0002.tif.bz2
+ 0.000349 testimages/testmap1_0002.tif.gz
+ 0.000383 testimages/testspr.spr.gz
diff --git a/test/profile/lapwright_benchmark b/test/profile/lapwright_benchmark
new file mode 100644
index 0000000..aa9b7ec
--- /dev/null
+++ b/test/profile/lapwright_benchmark
@@ -0,0 +1,54 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0000 0.0000 0.0000 0.508 testimages/Cr8F8140k103.0026
+0.0000 0.0000 0.0600 0.0363 0.0300 0.508 testimages/Cr8F8140k103.0026.bz2
+0.0000 0.0000 0.0100 0.0111 0.0100 0.508 testimages/Cr8F8140k103.0026.gz
+0.0100 0.0100 0.0200 8.003 testimages/F2K_Seb_Lyso0675.edf
+0.0100 0.0000 0.7300 0.7201 0.6900 8.003 testimages/F2K_Seb_Lyso0675.edf.bz2
+0.0100 0.0000 0.1600 0.1851 0.1500 8.003 testimages/F2K_Seb_Lyso0675.edf.gz
+0.0100 0.0100 0.0200 8.008 testimages/GE_aSI_detector_image_1529
+0.0100 0.0000 0.6200 0.6092 0.4900 8.008 testimages/GE_aSI_detector_image_1529.bz2
+0.0000 0.0100 0.1200 0.1191 0.1200 8.008 testimages/GE_aSI_detector_image_1529.gz
+0.0100 0.0000 0.4100 0.256 testimages/b191_1_9_1.img
+0.0000 0.0000 0.4700 0.0305 0.0300 0.256 testimages/b191_1_9_1.img.bz2
+0.0000 0.0000 0.4600 0.0071 0.0100 0.256 testimages/b191_1_9_1.img.gz
+0.0000 0.0000 0.0100 1.005 testimages/b191_1_9_1_uncompressed.img
+0.0000 0.0000 0.1200 0.0655 0.0600 1.005 testimages/b191_1_9_1_uncompressed.img.bz2
+0.0000 0.0000 0.0400 0.0341 0.0100 1.005 testimages/b191_1_9_1_uncompressed.img.gz
+0.0200 0.0000 0.1300 8.004 testimages/corkcont2_H_0089.mccd
+0.0000 0.0000 0.4200 0.3214 0.2900 8.004 testimages/corkcont2_H_0089.mccd.bz2
+0.0000 0.0000 0.1800 0.0977 0.0900 8.004 testimages/corkcont2_H_0089.mccd.gz
+0.0000 0.0000 0.1800 3.471 testimages/example.mar2300
+0.0100 0.0000 0.7600 0.4990 0.5800 3.471 testimages/example.mar2300.bz2
+0.0100 0.0000 0.3000 0.0672 0.0500 3.471 testimages/example.mar2300.gz
+0.0000 0.0000 0.0000 0.215 testimages/face.edf
+0.0000 0.0000 0.0000 0.0109 0.0000 0.215 testimages/face.edf.bz2
+0.0000 0.0000 0.0000 0.0098 0.0000 0.215 testimages/face.edf.gz
+0.0000 0.0000 0.0100 0.008 testimages/face.msk
+0.0000 0.0000 0.0100 0.0089 0.0000 0.008 testimages/face.msk.bz2
+0.0000 0.0000 0.0100 0.0084 0.0000 0.008 testimages/face.msk.gz
+0.0000 0.0100 0.0100 4.001 testimages/fit2d_click.edf
+0.0000 0.0000 0.0300 0.0498 0.0200 4.001 testimages/fit2d_click.edf.bz2
+0.0000 0.0000 0.0400 0.0433 0.0300 4.001 testimages/fit2d_click.edf.gz
+0.0000 0.0000 0.1100 0.126 testimages/fit2d_click.msk
+0.0000 0.0000 0.1100 0.0184 0.0000 0.126 testimages/fit2d_click.msk.bz2
+0.0000 0.0000 0.1300 0.0117 0.0000 0.126 testimages/fit2d_click.msk.gz
+0.0400 0.0400 0.0800 36.001 testimages/mb_LP_1_001.edf
+0.0200 0.0200 0.1100 18.000 testimages/mb_LP_1_001.img
+0.0100 0.0000 1.9300 1.3436 1.1800 18.000 testimages/mb_LP_1_001.img.bz2
+0.0100 0.0100 0.4200 0.3263 0.2600 18.000 testimages/mb_LP_1_001.img.gz
+0.0200 0.0000 0.1400 8.067 testimages/oPPA_5grains_0001.tif
+0.0000 0.0000 0.3800 0.2985 0.2300 8.067 testimages/oPPA_5grains_0001.tif.bz2
+0.0000 0.0000 0.1600 0.0624 0.0600 8.067 testimages/oPPA_5grains_0001.tif.gz
+0.0100 0.0000 0.0200 2.004 testimages/somedata_0001.mccd
+0.0000 0.0000 0.1800 0.1373 0.1200 2.004 testimages/somedata_0001.mccd.bz2
+0.0000 0.0000 0.0400 0.0466 0.0300 2.004 testimages/somedata_0001.mccd.gz
+0.0000 0.0000 0.0100 0.023 testimages/testmap1_0002.tif
+0.0000 0.0000 0.0000 0.0080 0.0000 0.023 testimages/testmap1_0002.tif.bz2
+0.0000 0.0000 0.0000 0.0078 0.0000 0.023 testimages/testmap1_0002.tif.gz
+0.0000 0.0000 1.0200 0.1523 0.1200 9.141 testimages/testspr.spr.gz
diff --git a/test/profile/lintaillefer_benchHeaders b/test/profile/lintaillefer_benchHeaders
new file mode 100644
index 0000000..c08838e
--- /dev/null
+++ b/test/profile/lintaillefer_benchHeaders
@@ -0,0 +1,95 @@
+ 0.000329 testimages/Cr8F8140k103.0026
+ 0.037044 testimages/Cr8F8140k103.0026.bz2
+ 0.000592 testimages/Cr8F8140k103.0026.gz
+ 0.003818 testimages/F2K_Seb_Lyso0675.edf
+ 0.557174 testimages/F2K_Seb_Lyso0675.edf.bz2
+ 0.086970 testimages/F2K_Seb_Lyso0675.edf.gz
+ 0.000493 testimages/F2K_Seb_Lyso0675_header_only.edf
+ 0.001307 testimages/F2K_Seb_Lyso0675_header_only.edf.bz2
+ 0.000816 testimages/F2K_Seb_Lyso0675_header_only.edf.gz
+ 0.000236 testimages/GE_aSI_detector_image_1529
+ 0.051342 testimages/GE_aSI_detector_image_1529.bz2
+ 0.000785 testimages/GE_aSI_detector_image_1529.gz
+ 0.001612 testimages/MultiFrame-Frame0.edf
+ 0.176526 testimages/MultiFrame-Frame0.edf.bz2
+ 0.021154 testimages/MultiFrame-Frame0.edf.gz
+ 0.001412 testimages/MultiFrame-Frame1.edf
+ 0.176522 testimages/MultiFrame-Frame1.edf.bz2
+ 0.021324 testimages/MultiFrame-Frame1.edf.gz
+ 0.003797 testimages/MultiFrame.edf
+ 0.505238 testimages/MultiFrame.edf.bz2
+ 0.086753 testimages/MultiFrame.edf.gz
+ 0.000412 testimages/XSDataImage.edf
+ 0.003893 testimages/XSDataImage.xml
+ 0.003825 testimages/XSDataImageInv.xml
+ 0.000221 testimages/b191_1_9_1.img
+ 0.055115 testimages/b191_1_9_1.img.bz2
+ 0.000593 testimages/b191_1_9_1.img.gz
+ 0.000210 testimages/b191_1_9_1_uncompressed.img
+ 0.060150 testimages/b191_1_9_1_uncompressed.img.bz2
+ 0.000622 testimages/b191_1_9_1_uncompressed.img.gz
+ 0.002060 testimages/corkcont2_H_0089.mccd
+ 0.056873 testimages/corkcont2_H_0089.mccd.bz2
+ 0.002520 testimages/corkcont2_H_0089.mccd.gz
+ 0.001412 testimages/edfCompressed_U16.edf
+ 0.409378 testimages/edfCompressed_U16.edf.bz2
+ 0.009362 testimages/edfCompressed_U16.edf.gz
+ 0.001355 testimages/edfGzip_U16.edf
+ 0.409779 testimages/edfGzip_U16.edf.bz2
+ 0.009243 testimages/edfGzip_U16.edf.gz
+ 0.003138 testimages/edfUncompressed_U16.edf
+ 0.461300 testimages/edfUncompressed_U16.edf.bz2
+ 0.065004 testimages/edfUncompressed_U16.edf.gz
+ 0.000304 testimages/example.mar2300
+ 0.132916 testimages/example.mar2300.bz2
+ 0.000491 testimages/example.mar2300.gz
+ 0.000294 testimages/face.edf
+ 0.002074 testimages/face.edf.bz2
+ 0.001499 testimages/face.edf.gz
+ 0.000097 testimages/face.msk
+ 0.000470 testimages/face.msk.bz2
+ 0.000302 testimages/face.msk.gz
+ 0.001673 testimages/fit2d_click.edf
+ 0.018431 testimages/fit2d_click.edf.bz2
+ 0.020730 testimages/fit2d_click.edf.gz
+ 0.000095 testimages/fit2d_click.msk
+ 0.000281 testimages/fit2d_click.msk.bz2
+ 0.001220 testimages/fit2d_click.msk.gz
+ 0.001084 testimages/i01f0001.edf
+ 0.110340 testimages/i01f0001.edf.bz2
+ 0.012220 testimages/i01f0001.edf.gz
+ 0.001402 testimages/i01f0001.kcd
+ 0.078815 testimages/i01f0001.kcd.bz2
+ 0.007362 testimages/i01f0001.kcd.gz
+ 0.000401 testimages/id13_badPadding.edf
+ 0.066293 testimages/id13_badPadding.edf.bz2
+ 0.007500 testimages/id13_badPadding.edf.gz
+ 0.000297 testimages/im0000.edf
+ 0.005363 testimages/im0000.edf.bz2
+ 0.001566 testimages/im0000.edf.gz
+ 0.000166 testimages/image.0000
+ 0.001915 testimages/image.0000.bz2
+ 0.000981 testimages/image.0000.gz
+ 0.021417 testimages/mb_LP_1_001.edf
+ 1.442814 testimages/mb_LP_1_001.edf.bz2
+ 0.267614 testimages/mb_LP_1_001.edf.gz
+ 0.011164 testimages/mb_LP_1_001.img
+ 0.395687 testimages/mb_LP_1_001.img.bz2
+ 0.067309 testimages/mb_LP_1_001.img.gz
+ 0.011211 testimages/mb_LP_1_002.img
+ 0.000093 testimages/oPPA_5grains_0001.tif
+ 0.011608 testimages/oPPA_5grains_0001.tif.bz2
+ 0.001260 testimages/oPPA_5grains_0001.tif.gz
+ 0.102151 testimages/run2_1_00148.cbf
+ 0.577272 testimages/run2_1_00148.cbf.bz2
+ 0.156771 testimages/run2_1_00148.cbf.gz
+ 0.010526 testimages/run2_1_00148.edf
+ 0.862486 testimages/run2_1_00148.edf.bz2
+ 0.118586 testimages/run2_1_00148.edf.gz
+ 0.002041 testimages/somedata_0001.mccd
+ 0.070370 testimages/somedata_0001.mccd.bz2
+ 0.002538 testimages/somedata_0001.mccd.gz
+ 0.000089 testimages/testmap1_0002.tif
+ 0.000198 testimages/testmap1_0002.tif.bz2
+ 0.000430 testimages/testmap1_0002.tif.gz
+ 0.000087 testimages/tifimagewrite_test0000.tif
diff --git a/test/profile/profile_compressed.py b/test/profile/profile_compressed.py
new file mode 100644
index 0000000..40dcdaa
--- /dev/null
+++ b/test/profile/profile_compressed.py
@@ -0,0 +1,131 @@
+
+"""
+Benchmark the bz2 and gzip modules compared to their system counterparts
+"""
+
+import cProfile, os, time, random, gzip, bz2, struct, sys
+
+try:
+ import pstats
+except:
+ print "Your package manager is probably teasing you"
+ print "try sudo apt-get install python-profiler"
+ sys.exit()
+
+
+
+print "Setting up"
+npts = int(1e6)
+data = [ random.random() for i in range(npts) ]
+sdata = struct.pack( "d"*npts, *tuple(data) )
+open("prof.dat","wb").write(sdata)
+open("prof2.dat","wb").write(" "*npts*8)
+
+os.system("gzip -c prof.dat > prof.dat.gz")
+os.system("bzip2 -c prof.dat > prof.dat.bz2")
+os.system("gzip -c prof2.dat > prof2.dat.gz")
+os.system("bzip2 -c prof2.dat > prof2.dat.bz2")
+
+print "Done setup"
+sys.stdout.flush()
+def tst(fobj, fname):
+ """test"""
+ fo = fobj(fname, "rb")
+ fo.read()
+ return
+
+
+
+print "Python gzip module"
+start = time.time()
+cProfile.run( "tst(gzip.GzipFile, 'prof.dat.gz')", "gzstats")
+p = pstats.Stats("gzstats")
+p.strip_dirs().sort_stats(-1).print_stats()
+del p
+
+
+print "Python bz2 module"
+cProfile.run( "tst(bz2.BZ2File, 'prof.dat.bz2')", "bz2stats")
+p = pstats.Stats("bz2stats")
+p.strip_dirs().sort_stats(-1).print_stats()
+del p
+
+def tstsys(cmd):
+ """ test system"""
+ fo = os.popen(cmd,"rb")
+ fo.read()
+ return
+
+print "System gzip"
+cProfile.run( "tstsys('gzip -cd prof.dat.gz')", "gzosstats")
+p = pstats.Stats("gzosstats")
+p.strip_dirs().sort_stats(-1).print_stats()
+del p
+
+print "System bz2"
+cProfile.run( "tstsys('bzip2 -cd prof.dat.bz2')", "bz2osstats")
+p = pstats.Stats("bz2osstats")
+p.strip_dirs().sort_stats(-1).print_stats()
+del p
+
+
+
+import timeit
+cl = ["ret = gzip.GzipFile( 'prof.dat.gz' ,'rb').read()",
+ "ret = os.popen( 'gzip -dc prof.dat.gz' ,'rb').read()",
+ "ret = bz2.BZ2File( 'prof.dat.bz2','rb').read()",
+ "ret = os.popen( 'bzip2 -dc prof.dat.bz2','rb').read()",
+ "ret = gzip.GzipFile( 'prof2.dat.gz' ,'rb').read()",
+ "ret = os.popen( 'gzip -dc prof2.dat.gz' ,'rb').read()",
+ "ret = bz2.BZ2File( 'prof2.dat.bz2','rb').read()",
+ "ret = os.popen('bzip2 -dc prof2.dat.bz2','rb').read()",
+ ]
+
+if sys.platform != "win32":
+ cl.append("ret = os.popen( 'gzip -dc prof.dat.gz' ,'rb',2**20).read()")
+ cl.append("ret = os.popen( 'bzip2 -dc prof.dat.bz2','rb',2**20).read()")
+ cl.append("ret = os.popen( 'gzip -dc prof2.dat.gz' ,'rb',2**20).read()")
+ cl.append("ret = os.popen(' bzip2 -dc prof2.dat.bz2','rb',2**20).read()")
+
+for s in cl:
+ t = timeit.Timer(s, setup="import os, gzip, bz2")
+ print s, ":", t.timeit(5)/5
+
+# Finally - shell version
+
+if sys.platform == 'win32':
+ start = time.time()
+ s = "gzip -cd prof.dat.gz > junk"
+ os.system(s)
+ print s, ":", time.time()-start, "seconds via shell"
+ start = time.time()
+ s = "bzip2 -cd prof.dat.bz2 > junk"
+ os.system(s)
+ print s, ":", time.time()-start, "seconds via shell"
+ start = time.time()
+ s = "gzip -cd prof2.dat.gz > junk"
+ os.system(s)
+ print s, ":", time.time()-start, "seconds via shell"
+ start = time.time()
+ s = "bzip2 -cd prof2.dat.bz2 > junk"
+ os.system(s)
+ print s, ":", time.time()-start, "seconds via shell"
+ os.remove("junk")
+else:
+ sys.stdout.flush()
+ s = "time gzip -cd prof.dat.gz > /dev/null"
+ print "Time shell gzip:", s
+ os.system(s)
+ sys.stdout.flush()
+ s = "time bzip2 -cd prof.dat.bz2 > /dev/null"
+ print "Time shell bzip2:", s
+ os.system(s)
+ sys.stdout.flush()
+ s = "time gzip -cd prof2.dat.gz > /dev/null"
+ print "Time shell gzip:", s
+ os.system(s)
+ sys.stdout.flush()
+ s = "time bzip2 -cd prof2.dat.bz2 > /dev/null"
+ print "Time shell bzip2:", s
+ os.system(s)
+
diff --git a/test/profile/win32_benchheaders b/test/profile/win32_benchheaders
new file mode 100644
index 0000000..d8c759d
--- /dev/null
+++ b/test/profile/win32_benchheaders
@@ -0,0 +1,46 @@
+ 0.002363 testimages\Cr8F8140k103.0026
+ 0.066067 testimages\Cr8F8140k103.0026.bz2
+ 0.001853 testimages\Cr8F8140k103.0026.gz
+ 0.002819 testimages\F2K_Seb_Lyso0675.edf
+ 0.121077 testimages\F2K_Seb_Lyso0675.edf.bz2
+ 0.002366 testimages\F2K_Seb_Lyso0675.edf.gz
+ 0.001428 testimages\GE_aSI_detector_image_1529
+ 0.082350 testimages\GE_aSI_detector_image_1529.bz2
+ 0.003077 testimages\GE_aSI_detector_image_1529.gz
+ 0.000956 testimages\b191_1_9_1.img
+ 0.096141 testimages\b191_1_9_1.img.bz2
+ 0.002030 testimages\b191_1_9_1.img.gz
+ 0.001849 testimages\b191_1_9_1_uncompressed.img
+ 0.107067 testimages\b191_1_9_1_uncompressed.img.bz2
+ 0.001737 testimages\b191_1_9_1_uncompressed.img.gz
+ 0.001170 testimages\corkcont2_H_0089.mccd
+ 0.091742 testimages\corkcont2_H_0089.mccd.bz2
+ 0.002270 testimages\corkcont2_H_0089.mccd.gz
+ 0.001537 testimages\example.mar2300
+ 0.257166 testimages\example.mar2300.bz2
+ 0.002286 testimages\example.mar2300.gz
+ 0.001194 testimages\face.edf
+ 0.002741 testimages\face.edf.bz2
+ 0.003132 testimages\face.edf.gz
+ 0.000567 testimages\face.msk
+ 0.001318 testimages\face.msk.bz2
+ 0.000881 testimages\face.msk.gz
+ 0.001576 testimages\fit2d_click.edf
+ 0.002984 testimages\fit2d_click.edf.bz2
+ 0.016475 testimages\fit2d_click.edf.gz
+ 0.000976 testimages\fit2d_click.msk
+ 0.000984 testimages\fit2d_click.msk.bz2
+ 0.003222 testimages\fit2d_click.msk.gz
+ 0.062191 testimages\mb_LP_1_001.img
+ 1.668834 testimages\mb_LP_1_001.img.bz2
+ 0.181976 testimages\mb_LP_1_001.img.gz
+ 0.058940 testimages\mb_LP_1_002.img
+ 0.000631 testimages\oPPA_5grains_0001.tif
+ 0.028324 testimages\oPPA_5grains_0001.tif.bz2
+ 0.004554 testimages\oPPA_5grains_0001.tif.gz
+ 0.000595 testimages\somedata_0001.mccd
+ 0.113065 testimages\somedata_0001.mccd.bz2
+ 0.001092 testimages\somedata_0001.mccd.gz
+ 0.000538 testimages\testmap1_0002.tif
+ 0.000787 testimages\testmap1_0002.tif.bz2
+ 0.001096 testimages\testmap1_0002.tif.gz
diff --git a/test/profile/win32_benchmark b/test/profile/win32_benchmark
new file mode 100644
index 0000000..6fe2c51
--- /dev/null
+++ b/test/profile/win32_benchmark
@@ -0,0 +1,3285 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0025 0.0020 0.0095 0.508 testimages\Cr8F8140k103.0026
+Mon Mar 16 12:20:12 2009 stats
+
+ 637 function calls in 0.011 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.011 0.011 <string>:1(<module>)
+ 1 0.001 0.001 0.002 0.002 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.010 0.010 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.011 0.011 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.005 0.005 readbytestream.py:27(readbytestream)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 6 0.002 0.000 0.002 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0012 0.0009 0.1342 0.1880 0.0778 0.508 testimages\Cr8F8140k103.0026.bz2
+Mon Mar 16 12:20:14 2009 stats
+
+ 637 function calls in 0.137 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.137 0.137 <string>:1(<module>)
+ 1 0.002 0.002 0.054 0.054 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.083 0.083 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.001 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.137 0.137 openimage.py:68(openimage)
+ 1 0.000 0.000 0.054 0.054 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.025 0.025 readbytestream.py:27(readbytestream)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 6 0.126 0.021 0.126 0.021 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'bz2.BZ2File' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tell' of 'bz2.BZ2File' objects}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.002 0.002 0.002 0.002 {numpy.core.multiarray.fromstring}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0015 0.0011 0.0306 0.1250 0.0194 0.508 testimages\Cr8F8140k103.0026.gz
+Mon Mar 16 12:20:14 2009 stats
+
+ 814 function calls in 0.032 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.032 0.032 <string>:1(<module>)
+ 1 0.001 0.001 0.003 0.003 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.030 0.030 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 7 0.002 0.000 0.021 0.003 gzip.py:208(read)
+ 12 0.000 0.000 0.019 0.002 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 12 0.005 0.000 0.006 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:360(tell)
+ 1 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.032 0.032 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.024 0.024 readbytestream.py:27(readbytestream)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 12 0.011 0.001 0.011 0.001 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 25 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 58 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 12 0.000 0.000 0.000 0.000 {min}
+ 1 0.002 0.002 0.002 0.002 {numpy.core.multiarray.array}
+ 1 0.002 0.002 0.002 0.002 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 2 0.000 0.000 0.000 0.000 {range}
+ 14 0.001 0.000 0.001 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0350 0.0294 0.0529 8.003 testimages\F2K_Seb_Lyso0675.edf
+Mon Mar 16 12:20:14 2009 stats
+
+ 624 function calls in 0.052 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.052 0.052 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.002 0.002 0.002 0.002 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.049 0.049 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.051 0.051 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 10 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 8 0.027 0.003 0.027 0.003 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.019 0.019 0.019 0.019 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.0102 0.0091 1.3386 1.6250 1.2248 8.003 testimages\F2K_Seb_Lyso0675.edf.bz2
+Mon Mar 16 12:20:20 2009 stats
+
+ 624 function calls in 1.319 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 1.319 1.319 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.001 0.001 0.061 0.061 edfimage.py:55(_readheader)
+ 1 0.000 0.000 1.252 1.252 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 1.318 1.318 openimage.py:68(openimage)
+ 1 0.001 0.001 0.065 0.065 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 10 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 8 1.301 0.163 1.301 0.163 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.012 0.012 0.012 0.012 {numpy.core.multiarray.fromstring}
+
+
+0.0115 0.0139 0.2080 0.3750 0.1809 8.003 testimages\F2K_Seb_Lyso0675.edf.gz
+Mon Mar 16 12:20:20 2009 stats
+
+ 841 function calls in 0.209 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.209 0.209 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.002 0.002 0.003 0.003 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.206 0.206 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 8 0.002 0.000 0.189 0.024 gzip.py:208(read)
+ 17 0.001 0.000 0.187 0.011 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 16 0.032 0.002 0.044 0.003 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.208 0.208 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 16 0.125 0.008 0.125 0.008 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 43 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 68 0.018 0.000 0.018 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.014 0.014 0.014 0.014 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 18 0.011 0.001 0.011 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0174 0.0233 0.0333 8.008 testimages\GE_aSI_detector_image_1529
+Mon Mar 16 12:20:20 2009 stats
+
+ 475 function calls in 0.039 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.039 0.039 <string>:1(<module>)
+ 1 0.001 0.001 0.002 0.002 GEimage.py:183(_readheader)
+ 1 0.000 0.000 0.038 0.038 GEimage.py:196(read)
+ 1 0.000 0.000 0.000 0.000 GEimage.py:211(_makeframename)
+ 1 0.001 0.001 0.035 0.035 GEimage.py:217(_readframe)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.038 0.038 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 130 0.000 0.000 0.001 0.000 struct.py:77(unpack)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 157 0.022 0.000 0.022 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 130 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 1 0.012 0.012 0.012 0.012 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.0047 0.0043 1.0045 1.3290 0.9405 8.008 testimages\GE_aSI_detector_image_1529.bz2
+Mon Mar 16 12:20:24 2009 stats
+
+ 477 function calls in 1.016 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 1.016 1.016 <string>:1(<module>)
+ 1 0.001 0.001 0.002 0.002 GEimage.py:183(_readheader)
+ 1 0.000 0.000 0.970 0.970 GEimage.py:196(read)
+ 1 0.000 0.000 0.000 0.000 GEimage.py:211(_makeframename)
+ 1 0.001 0.001 0.028 0.028 GEimage.py:217(_readframe)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.001 0.000 0.939 0.470 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.938 0.469 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 1.015 1.015 openimage.py:68(openimage)
+ 1 0.001 0.001 0.045 0.045 openimage.py:94(_openimage)
+ 130 0.001 0.000 0.001 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'cStringIO.StringI' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.982 0.491 0.982 0.491 {method 'read' of 'bz2.BZ2File' objects}
+ 156 0.015 0.000 0.015 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 130 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 1 0.012 0.012 0.012 0.012 {numpy.core.multiarray.fromstring}
+
+
+0.0079 0.0071 0.2199 0.3750 0.1330 8.008 testimages\GE_aSI_detector_image_1529.gz
+Mon Mar 16 12:20:26 2009 stats
+
+ 683 function calls in 0.166 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.166 0.166 <string>:1(<module>)
+ 1 0.001 0.001 0.002 0.002 GEimage.py:183(_readheader)
+ 1 0.000 0.000 0.165 0.165 GEimage.py:196(read)
+ 1 0.000 0.000 0.000 0.000 GEimage.py:211(_makeframename)
+ 1 0.001 0.001 0.026 0.026 GEimage.py:217(_readframe)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.136 0.068 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.136 0.068 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.001 0.001 0.136 0.068 gzip.py:208(read)
+ 14 0.000 0.000 0.135 0.010 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.033 0.003 0.044 0.003 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.166 0.166 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 132 0.001 0.000 0.001 0.000 struct.py:77(unpack)
+ 13 0.082 0.006 0.082 0.006 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 27 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'cStringIO.StringI' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 156 0.014 0.000 0.014 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 77 0.008 0.000 0.008 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 132 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 13 0.000 0.000 0.000 0.000 {min}
+ 1 0.011 0.011 0.011 0.011 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 15 0.011 0.001 0.011 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0017 0.0007 0.8216 0.256 testimages\b191_1_9_1.img
+Mon Mar 16 12:20:28 2009 stats
+
+ 128 function calls in 0.758 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.758 0.758 <string>:1(<module>)
+ 1 0.743 0.743 0.757 0.757 OXDimage.py:145(read)
+ 1 0.001 0.001 0.001 0.001 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.758 0.758 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 2 0.003 0.002 0.003 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.002 0.002 0.002 0.002 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 8 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.001 0.000 0.001 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 1 0.006 0.006 0.006 0.006 {range}
+
+
+0.0179 0.0004 0.7436 0.0930 0.0380 0.256 testimages\b191_1_9_1.img.bz2
+Mon Mar 16 12:20:28 2009 stats
+
+ 128 function calls in 0.773 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.773 0.773 <string>:1(<module>)
+ 1 0.657 0.657 0.740 0.740 OXDimage.py:145(read)
+ 1 0.001 0.001 0.066 0.066 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.001 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.773 0.773 openimage.py:68(openimage)
+ 1 0.000 0.000 0.032 0.032 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 2 0.003 0.001 0.003 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.002 0.002 0.002 0.002 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 8 0.037 0.005 0.037 0.005 {method 'read' of 'bz2.BZ2File' objects}
+ 6 0.034 0.006 0.034 0.006 {method 'readline' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.031 0.010 0.031 0.010 {method 'seek' of 'bz2.BZ2File' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.006 0.006 0.006 0.006 {range}
+
+
+0.0141 0.0004 0.6509 0.0620 0.0056 0.256 testimages\b191_1_9_1.img.gz
+Mon Mar 16 12:20:30 2009 stats
+
+ 394 function calls in 0.660 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.660 0.660 <string>:1(<module>)
+ 1 0.642 0.642 0.659 0.659 OXDimage.py:145(read)
+ 1 0.001 0.001 0.002 0.002 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 22 0.001 0.000 0.006 0.000 gzip.py:208(read)
+ 6 0.000 0.000 0.000 0.000 gzip.py:240(_unread)
+ 11 0.000 0.000 0.006 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 11 0.001 0.000 0.001 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
+ 3 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 6 0.000 0.000 0.001 0.000 gzip.py:391(readline)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.660 0.660 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 11 0.003 0.000 0.003 0.000 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 45 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 10 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.002 0.001 0.002 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.002 0.002 0.002 0.002 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 19 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 70 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 4 0.006 0.001 0.006 0.001 {range}
+ 14 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0024 0.0024 0.0064 1.005 testimages\b191_1_9_1_uncompressed.img
+Mon Mar 16 12:20:30 2009 stats
+
+ 120 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 1 0.000 0.000 0.006 0.006 OXDimage.py:145(read)
+ 1 0.000 0.000 0.000 0.000 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 1 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.002 0.002 0.002 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 7 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.001 0.000 0.001 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.0021 0.0005 0.1782 0.1870 0.1076 1.005 testimages\b191_1_9_1_uncompressed.img.bz2
+Mon Mar 16 12:20:32 2009 stats
+
+ 120 function calls in 0.178 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.178 0.178 <string>:1(<module>)
+ 1 0.000 0.000 0.142 0.142 OXDimage.py:145(read)
+ 1 0.000 0.000 0.071 0.071 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.178 0.178 openimage.py:68(openimage)
+ 1 0.001 0.001 0.036 0.036 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 1 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.001 0.001 0.001 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 7 0.102 0.015 0.102 0.015 {method 'read' of 'bz2.BZ2File' objects}
+ 6 0.035 0.006 0.035 0.006 {method 'readline' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.036 0.012 0.036 0.012 {method 'seek' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.002 0.000 0.002 0.000 {numpy.core.multiarray.fromstring}
+
+
+0.0030 0.0009 0.0189 0.0790 0.0152 1.005 testimages\b191_1_9_1_uncompressed.img.gz
+Mon Mar 16 12:20:32 2009 stats
+
+ 429 function calls in 0.020 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.020 0.020 <string>:1(<module>)
+ 1 0.000 0.000 0.019 0.019 OXDimage.py:145(read)
+ 1 0.000 0.000 0.001 0.001 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
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+
+0.0164 0.0176 0.2444 8.004 testimages\corkcont2_H_0089.mccd
+Mon Mar 16 12:20:32 2009 stats
+
+ 1304 function calls in 0.142 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
+0.0034 0.0042 0.7445 0.8120 0.5688 8.004 testimages\corkcont2_H_0089.mccd.bz2
+Mon Mar 16 12:20:34 2009 stats
+
+ 1306 function calls in 0.748 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
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+Mon Mar 16 12:20:36 2009 stats
+
+ 1494 function calls in 0.258 CPU seconds
+
+ Ordered by: standard name
+
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+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:62(field)
+ 1 0.000 0.000 0.000 0.000 JpegImagePlugin.py:231(_accept)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:28(i32)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:31(_accept)
+ 1 0.000 0.000 0.000 0.000 PcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 PngImagePlugin.py:261(_accept)
+ 1 0.000 0.000 0.000 0.000 PpmImagePlugin.py:40(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:157(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:168(__init__)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:180(reset)
+ 14 0.000 0.000 0.000 0.000 TiffImagePlugin.py:199(__getitem__)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:209(get)
+ 11 0.000 0.000 0.000 0.000 TiffImagePlugin.py:215(getscalar)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:230(has_key)
+ 4 0.000 0.000 0.000 0.000 TiffImagePlugin.py:255(load_short)
+ 4 0.000 0.000 0.000 0.000 TiffImagePlugin.py:262(load_long)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:269(load_rational)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:295(load)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:445(_open)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:477(_seek)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:497(_decoder)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:521(_setup)
+ 31 0.000 0.000 0.000 0.000 TiffImagePlugin.py:64(il16)
+ 25 0.000 0.000 0.000 0.000 TiffImagePlugin.py:66(il32)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.122 0.061 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.122 0.061 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.001 0.001 0.122 0.061 gzip.py:208(read)
+ 13 0.000 0.000 0.120 0.009 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 12 0.040 0.003 0.051 0.004 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.253 0.253 openimage.py:68(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.023 0.023 string.py:306(join)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(__init__)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:39(_readheader)
+ 1 0.009 0.009 0.250 0.250 tifimage.py:58(read)
+ 1 0.010 0.010 0.010 0.010 {_imaging.new}
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 1 0.022 0.022 0.022 0.022 {built-in method convert}
+ 128 0.005 0.000 0.005 0.000 {built-in method decode}
+ 12 0.065 0.005 0.065 0.005 {built-in method decompress}
+ 256 0.024 0.000 0.024 0.000 {built-in method encode}
+ 2 0.000 0.000 0.000 0.000 {built-in method pixel_access}
+ 1 0.000 0.000 0.000 0.000 {built-in method setimage}
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 4 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 13 0.000 0.000 0.000 0.000 {isinstance}
+ 59 0.000 0.000 0.000 0.000 {len}
+ 3 0.000 0.000 0.000 0.000 {max}
+ 267 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.023 0.012 0.023 0.012 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 151 0.003 0.000 0.003 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 66 0.003 0.000 0.003 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 14 0.000 0.000 0.000 0.000 {min}
+ 2 0.029 0.015 0.029 0.015 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 192 0.000 0.000 0.000 0.000 {ord}
+ 11 0.000 0.000 0.000 0.000 {range}
+ 14 0.011 0.001 0.011 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0089 0.8983 3.471 testimages\example.mar2300
+Mon Mar 16 12:20:36 2009 stats
+
+ 231 function calls in 0.517 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.517 0.517 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:137(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:74(__init__)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.515 0.515 mar345image.py:19(read)
+ 1 0.001 0.001 0.001 0.001 mar345image.py:47(_readheader)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:116(splitdrive)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:158(split)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.517 0.517 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 re.py:186(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:227(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 15 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 17 0.000 0.000 0.000 0.000 {len}
+ 1 0.514 0.514 0.514 0.514 {mar345_io.unpack}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 15 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0077 0.0079 1.4724 1.0150 0.7642 3.471 testimages\example.mar2300.bz2
+Mon Mar 16 12:20:42 2009 stats
+
+ 236 function calls in 1.510 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 1.510 1.510 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:137(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:74(__init__)
+ 2 0.000 0.000 0.837 0.418 fabioimage.py:284(_open)
+ 2 0.001 0.001 0.836 0.418 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 1.383 1.383 mar345image.py:19(read)
+ 1 0.000 0.000 0.001 0.001 mar345image.py:47(_readheader)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:116(splitdrive)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:158(split)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 1.510 1.510 openimage.py:68(openimage)
+ 1 0.001 0.001 0.127 0.127 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 re.py:186(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:227(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 15 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 17 0.000 0.000 0.000 0.000 {len}
+ 1 0.545 0.545 0.545 0.545 {mar345_io.unpack}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.886 0.443 0.886 0.443 {method 'read' of 'bz2.BZ2File' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 15 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 1 0.074 0.074 0.074 0.074 {method 'write' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {nt.tmpfile}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0076 0.0078 0.6351 0.1410 0.0660 3.471 testimages\example.mar2300.gz
+Mon Mar 16 12:20:44 2009 stats
+
+ 419 function calls in 0.649 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.649 0.649 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:137(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:74(__init__)
+ 2 0.000 0.000 0.127 0.064 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.127 0.064 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.001 0.000 0.066 0.033 gzip.py:208(read)
+ 14 0.000 0.000 0.065 0.005 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.012 0.001 0.017 0.001 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.648 0.648 mar345image.py:19(read)
+ 1 0.001 0.001 0.001 0.001 mar345image.py:47(_readheader)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:116(splitdrive)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:158(split)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.649 0.649 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 re.py:186(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:227(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 17 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 13 0.040 0.003 0.040 0.003 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 44 0.000 0.000 0.000 0.000 {len}
+ 1 0.519 0.519 0.519 0.519 {mar345_io.unpack}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 3 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 58 0.008 0.000 0.008 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 1 0.060 0.060 0.060 0.060 {method 'write' of 'file' objects}
+ 13 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {nt.tmpfile}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 11 0.000 0.000 0.000 0.000 {range}
+ 15 0.005 0.000 0.005 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0046 0.0005 0.0012 0.215 testimages\face.edf
+Mon Mar 16 12:20:44 2009 stats
+
+ 119 function calls in 0.001 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.001 0.001 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.001 0.001 openimage.py:68(openimage)
+ 1 0.000 0.000 0.000 0.000 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 7 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+
+
+0.0016 0.0002 0.0045 0.0620 0.0036 0.215 testimages\face.edf.bz2
+Mon Mar 16 12:20:44 2009 stats
+
+ 119 function calls in 0.005 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.005 0.005 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.004 0.004 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.005 0.005 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {apply}
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+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.004 0.001 0.004 0.001 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+
+
+0.0003 0.0003 0.0038 0.0620 0.0030 0.215 testimages\face.edf.gz
+Mon Mar 16 12:20:44 2009 stats
+
+ 208 function calls in 0.005 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.005 0.005 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.003 0.003 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 4 0.000 0.000 0.003 0.001 gzip.py:208(read)
+ 4 0.000 0.000 0.003 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 3 0.000 0.000 0.001 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.005 0.005 openimage.py:68(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 3 0.002 0.001 0.002 0.001 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 14 0.000 0.000 0.000 0.000 {len}
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+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 31 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 3 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 5 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0007 0.0004 0.0054 0.008 testimages\face.msk
+Mon Mar 16 12:20:44 2009 stats
+
+ 82 function calls in 0.006 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.006 0.006 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.002 0.002 0.005 0.005 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.006 0.006 openimage.py:68(openimage)
+ 1 0.000 0.000 0.000 0.000 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 9 0.000 0.000 0.000 0.000 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.003 0.003 0.003 0.003 {numpy.core.multiarray.where}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.zeros}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0003 0.0002 0.0057 0.0630 0.0012 0.008 testimages\face.msk.bz2
+Mon Mar 16 12:20:44 2009 stats
+
+ 82 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.001 0.001 0.006 0.006 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 9 0.000 0.000 0.000 0.000 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 3 0.001 0.000 0.001 0.000 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.003 0.003 0.003 0.003 {numpy.core.multiarray.where}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.zeros}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0004 0.0004 0.0056 0.0630 0.0010 0.008 testimages\face.msk.gz
+Mon Mar 16 12:20:44 2009 stats
+
+ 167 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.001 0.001 0.005 0.005 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 3 0.000 0.000 0.001 0.000 gzip.py:208(read)
+ 3 0.000 0.000 0.001 0.000 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 3 0.000 0.000 0.000 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 3 0.000 0.000 0.000 0.000 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 9 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 9 0.000 0.000 0.000 0.000 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 31 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 3 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.003 0.003 0.003 0.003 {numpy.core.multiarray.where}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.zeros}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 1 0.000 0.000 0.000 0.000 {range}
+ 5 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.1201 0.0069 0.0154 4.001 testimages\fit2d_click.edf
+Mon Mar 16 12:20:44 2009 stats
+
+ 119 function calls in 0.025 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.025 0.025 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.023 0.023 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.025 0.025 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {apply}
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+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 7 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.006 0.001 0.006 0.001 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.016 0.016 0.016 0.016 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.0030 0.0005 0.0681 0.1250 0.0623 4.001 testimages\fit2d_click.edf.bz2
+Mon Mar 16 12:20:44 2009 stats
+
+ 119 function calls in 0.067 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.067 0.067 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.002 0.002 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.062 0.062 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.065 0.065 openimage.py:68(openimage)
+ 1 0.000 0.000 0.003 0.003 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {apply}
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+ 4 0.000 0.000 0.000 0.000 {max}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.057 0.014 0.057 0.014 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.006 0.006 0.006 0.006 {numpy.core.multiarray.fromstring}
+
+
+0.0008 0.0004 0.0632 0.1410 0.0437 4.001 testimages\fit2d_click.edf.gz
+Mon Mar 16 12:20:44 2009 stats
+
+ 238 function calls in 0.063 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.063 0.063 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
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+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.011 0.011 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.055 0.055 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 4 0.004 0.001 0.052 0.013 gzip.py:208(read)
+ 6 0.000 0.000 0.048 0.008 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 5 0.015 0.003 0.023 0.005 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.062 0.062 openimage.py:68(openimage)
+ 1 0.000 0.000 0.007 0.007 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 5 0.024 0.005 0.024 0.005 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 18 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 47 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 5 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.008 0.008 0.008 0.008 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 7 0.007 0.001 0.007 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0009 0.0003 0.0767 0.126 testimages\fit2d_click.msk
+Mon Mar 16 12:20:44 2009 stats
+
+ 82 function calls in 0.081 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.081 0.081 <string>:1(<module>)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.014 0.014 0.080 0.080 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.081 0.081 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 9 0.007 0.001 0.007 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.057 0.057 0.057 0.057 {numpy.core.multiarray.where}
+ 1 0.002 0.002 0.002 0.002 {numpy.core.multiarray.zeros}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0017 0.0003 0.0777 0.0620 0.0022 0.126 testimages\fit2d_click.msk.bz2
+Mon Mar 16 12:20:44 2009 stats
+
+ 82 function calls in 0.080 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.080 0.080 <string>:1(<module>)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.012 0.012 0.079 0.079 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.080 0.080 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 9 0.007 0.001 0.007 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 3 0.001 0.000 0.001 0.000 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.057 0.057 0.057 0.057 {numpy.core.multiarray.where}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.zeros}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0021 0.0003 0.0750 0.0630 0.0020 0.126 testimages\fit2d_click.msk.gz
+Mon Mar 16 12:20:46 2009 stats
+
+ 189 function calls in 0.077 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.077 0.077 <string>:1(<module>)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.001 0.001 fit2dmaskimage.py:19(_readheader)
+ 1 0.012 0.012 0.075 0.075 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 6 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 3 0.000 0.000 0.003 0.001 gzip.py:208(read)
+ 2 0.000 0.000 0.002 0.001 gzip.py:245(_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:295(_add_read_data)
+ 2 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 4 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.077 0.077 openimage.py:68(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:94(_openimage)
+ 4 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 2 0.001 0.001 0.001 0.001 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 8 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 9 0.006 0.001 0.006 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 46 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 2 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.054 0.054 0.054 0.054 {numpy.core.multiarray.where}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.zeros}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 1 0.000 0.000 0.000 0.000 {range}
+ 4 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0377 0.0507 0.2064 18.000 testimages\mb_LP_1_001.img
+Mon Mar 16 12:20:46 2009 stats
+
+ 183 function calls in 0.210 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.210 0.210 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.003 0.003 0.204 0.204 adscimage.py:25(read)
+ 1 0.000 0.000 0.074 0.074 adscimage.py:71(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.003 0.003 0.208 0.208 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 20 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 17 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.060 0.060 0.060 0.060 {method 'byteswap' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.040 0.020 0.040 0.020 {method 'read' of 'file' objects}
+ 19 0.074 0.004 0.074 0.004 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 1 0.027 0.027 0.027 0.027 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.1270 0.0125 4.6505 3.4060 2.6507 18.000 testimages\mb_LP_1_001.img.bz2
+Mon Mar 16 12:21:00 2009 stats
+
+ 183 function calls in 4.413 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 4.413 4.413 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.002 0.002 4.356 4.356 adscimage.py:25(read)
+ 1 0.000 0.000 1.657 1.657 adscimage.py:71(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.002 0.002 4.411 4.411 openimage.py:68(openimage)
+ 1 0.001 0.001 0.054 0.054 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 20 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 17 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.051 0.051 0.051 0.051 {method 'byteswap' of 'numpy.ndarray' objects}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 2.626 1.313 2.626 1.313 {method 'read' of 'bz2.BZ2File' objects}
+ 19 1.657 0.087 1.657 0.087 {method 'readline' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.045 0.045 0.045 0.045 {method 'seek' of 'bz2.BZ2File' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 1 0.026 0.026 0.026 0.026 {numpy.core.multiarray.fromstring}
+
+
+0.1923 0.0227 0.5979 1.0000 0.3347 18.000 testimages\mb_LP_1_001.img.gz
+Mon Mar 16 12:21:04 2009 stats
+
+ 1121 function calls in 0.607 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.607 0.607 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.003 0.003 0.601 0.601 adscimage.py:25(read)
+ 1 0.001 0.001 0.179 0.179 adscimage.py:71(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 3 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 3 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 37 0.019 0.001 0.485 0.013 gzip.py:208(read)
+ 19 0.005 0.000 0.005 0.000 gzip.py:240(_unread)
+ 75 0.002 0.000 0.466 0.006 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 74 0.104 0.001 0.138 0.002 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 3 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 3 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 19 0.005 0.000 0.178 0.009 gzip.py:391(readline)
+ 3 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 3 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.002 0.002 0.605 0.605 openimage.py:68(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 74 0.295 0.004 0.295 0.004 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 237 0.000 0.000 0.000 0.000 {len}
+ 3 0.000 0.000 0.000 0.000 {max}
+ 51 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.056 0.056 0.056 0.056 {method 'byteswap' of 'numpy.ndarray' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 38 0.005 0.000 0.005 0.000 {method 'find' of 'str' objects}
+ 20 0.007 0.000 0.007 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 136 0.030 0.000 0.030 0.000 {method 'read' of 'file' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 90 0.000 0.000 0.000 0.000 {min}
+ 1 0.034 0.034 0.034 0.034 {numpy.core.multiarray.fromstring}
+ 3 0.001 0.000 0.001 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 77 0.034 0.000 0.034 0.000 {zlib.crc32}
+ 3 0.001 0.000 0.001 0.000 {zlib.decompressobj}
+
+
+0.7949 0.0430 0.1928 18.000 testimages\mb_LP_1_002.img
+Mon Mar 16 12:21:04 2009 stats
+
+ 183 function calls in 0.208 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.208 0.208 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.003 0.003 0.203 0.203 adscimage.py:25(read)
+ 1 0.000 0.000 0.084 0.084 adscimage.py:71(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.002 0.002 0.206 0.206 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 20 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 17 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.052 0.052 0.052 0.052 {method 'byteswap' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.037 0.018 0.037 0.018 {method 'read' of 'file' objects}
+ 19 0.084 0.004 0.084 0.004 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 1 0.027 0.027 0.027 0.027 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.2505 0.0227 0.2163 8.067 testimages\oPPA_5grains_0001.tif
+Mon Mar 16 12:21:06 2009 stats
+
+ 11319 function calls in 0.221 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.004 0.004 0.223 0.223 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
+ 1 0.000 0.000 0.000 0.000 BmpImagePlugin.py:55(_accept)
+ 1 0.000 0.000 0.000 0.000 BufrStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
+ 2 0.000 0.000 0.000 0.000 GbrImagePlugin.py:18(i32)
+ 1 0.000 0.000 0.000 0.000 GbrImagePlugin.py:21(_accept)
+ 1 0.000 0.000 0.000 0.000 GifImagePlugin.py:47(_accept)
+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 Hdf5StubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 IcnsImagePlugin.py:204(<lambda>)
+ 1 0.000 0.000 0.000 0.000 IcoImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 ImImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.019 0.019 Image.py:1879(open)
+ 1 0.000 0.000 0.000 0.000 Image.py:280(preinit)
+ 512 0.003 0.000 0.006 0.000 Image.py:361(_getdecoder)
+ 1 0.000 0.000 0.000 0.000 Image.py:377(_getencoder)
+ 5 0.000 0.000 0.000 0.000 Image.py:439(__init__)
+ 1 0.000 0.000 0.000 0.000 Image.py:448(_new)
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+ 1 0.001 0.001 0.055 0.055 Image.py:503(tostring)
+ 3 0.000 0.000 0.000 0.000 Image.py:587(load)
+ 1 0.000 0.000 0.110 0.110 Image.py:638(convert)
+ 5 0.000 0.000 0.000 0.000 Image.py:82(isStringType)
+ 513 0.001 0.000 0.002 0.000 Image.py:91(isTupleType)
+ 1 0.008 0.008 0.088 0.088 ImageFile.py:115(load)
+ 1 0.000 0.000 0.010 0.010 ImageFile.py:219(load_prepare)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:228(load_end)
+ 511 0.001 0.000 0.001 0.000 ImageFile.py:49(_tilesort)
+ 4 0.000 0.000 0.000 0.000 ImageFile.py:508(_safe_read)
+ 4 0.000 0.000 0.018 0.005 ImageFile.py:63(__init__)
+ 1 0.000 0.000 0.000 0.000 ImtImagePlugin.py:37(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:110(_open)
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+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:28(i32)
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+ 1 0.000 0.000 0.018 0.018 TiffImagePlugin.py:445(_open)
+ 1 0.000 0.000 0.018 0.018 TiffImagePlugin.py:477(_seek)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:497(_decoder)
+ 1 0.005 0.005 0.017 0.017 TiffImagePlugin.py:521(_setup)
+ 37 0.000 0.000 0.000 0.000 TiffImagePlugin.py:64(il16)
+ 536 0.005 0.000 0.007 0.000 TiffImagePlugin.py:66(il32)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.219 0.219 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.030 0.030 string.py:306(join)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(__init__)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:39(_readheader)
+ 1 0.005 0.005 0.218 0.218 tifimage.py:58(read)
+ 1 0.010 0.010 0.010 0.010 {_imaging.new}
+ 513 0.001 0.000 0.001 0.000 {apply}
+ 1 0.022 0.022 0.022 0.022 {built-in method convert}
+ 512 0.039 0.000 0.039 0.000 {built-in method decode}
+ 256 0.024 0.000 0.024 0.000 {built-in method encode}
+ 2 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {built-in method pixel_access}
+ 1 0.000 0.000 0.000 0.000 {built-in method setimage}
+ 3 0.000 0.000 0.000 0.000 {chr}
+ 511 0.000 0.000 0.000 0.000 {cmp}
+ 515 0.001 0.000 0.001 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
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+ 551 0.000 0.000 0.000 0.000 {len}
+ 5 0.000 0.000 0.000 0.000 {max}
+ 1290 0.001 0.000 0.001 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.030 0.015 0.030 0.015 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 541 0.019 0.000 0.019 0.000 {method 'read' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 528 0.002 0.000 0.002 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.001 0.001 {method 'sort' of 'list' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1024 0.001 0.000 0.001 0.000 {min}
+ 2 0.030 0.015 0.030 0.015 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 2244 0.002 0.000 0.002 0.000 {ord}
+ 12 0.000 0.000 0.000 0.000 {range}
+
+
+0.0164 0.0005 0.7279 0.8430 0.5297 8.067 testimages\oPPA_5grains_0001.tif.bz2
+Mon Mar 16 12:21:08 2009 stats
+
+ 11321 function calls in 0.759 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.004 0.004 0.765 0.765 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
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+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
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+ 2 0.000 0.000 0.000 0.000 GbrImagePlugin.py:18(i32)
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+ 2 0.001 0.000 0.527 0.264 fabioimage.py:314(_compressed_stream)
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+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
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+ 1 0.000 0.000 0.028 0.028 string.py:306(join)
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+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.540 0.270 0.540 0.270 {method 'read' of 'bz2.BZ2File' objects}
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+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
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+ 2 0.028 0.014 0.028 0.014 {numpy.core.multiarray.fromstring}
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+
+
+0.0125 0.0006 0.2968 0.2810 0.0891 8.067 testimages\oPPA_5grains_0001.tif.gz
+Mon Mar 16 12:21:10 2009 stats
+
+ 11469 function calls in 0.283 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.006 0.006 0.284 0.284 <string>:1(<module>)
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+
+0.0576 0.0076 0.0391 2.004 testimages\somedata_0001.mccd
+Mon Mar 16 12:21:10 2009 stats
+
+ 728 function calls in 0.045 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
+
+0.0265 0.0011 0.2741 0.3130 0.1863 2.004 testimages\somedata_0001.mccd.bz2
+Mon Mar 16 12:21:10 2009 stats
+
+ 730 function calls in 0.280 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.280 0.280 <string>:1(<module>)
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+
+0.0307 0.0016 0.0655 0.1090 0.0349 2.004 testimages\somedata_0001.mccd.gz
+Mon Mar 16 12:21:12 2009 stats
+
+ 904 function calls in 0.067 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 2 0.006 0.003 0.006 0.003 {method 'join' of 'str' objects}
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+ 55 0.001 0.000 0.001 0.000 {method 'read' of 'cStringIO.StringI' objects}
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+
+
+0.0031 0.0008 0.0030 0.023 testimages\testmap1_0002.tif
+Mon Mar 16 12:21:12 2009 stats
+
+ 595 function calls in 0.003 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
+
+0.0018 0.0003 0.0024 0.0470 0.0008 0.023 testimages\testmap1_0002.tif.bz2
+Mon Mar 16 12:21:12 2009 stats
+
+ 597 function calls in 0.003 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 1 0.000 0.000 0.000 0.000 PpmImagePlugin.py:40(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:157(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:168(__init__)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:180(reset)
+ 14 0.000 0.000 0.000 0.000 TiffImagePlugin.py:199(__getitem__)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:209(get)
+ 11 0.000 0.000 0.000 0.000 TiffImagePlugin.py:215(getscalar)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:230(has_key)
+ 8 0.000 0.000 0.000 0.000 TiffImagePlugin.py:255(load_short)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:262(load_long)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:269(load_rational)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:295(load)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:445(_open)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:477(_seek)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:497(_decoder)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:521(_setup)
+ 37 0.000 0.000 0.000 0.000 TiffImagePlugin.py:64(il16)
+ 26 0.000 0.000 0.000 0.000 TiffImagePlugin.py:66(il32)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.003 0.003 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 string.py:306(join)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(__init__)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:39(_readheader)
+ 1 0.000 0.000 0.003 0.003 tifimage.py:58(read)
+ 1 0.000 0.000 0.000 0.000 {_imaging.new}
+ 3 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method convert}
+ 2 0.000 0.000 0.000 0.000 {built-in method decode}
+ 1 0.000 0.000 0.000 0.000 {built-in method encode}
+ 2 0.000 0.000 0.000 0.000 {built-in method pixel_access}
+ 1 0.000 0.000 0.000 0.000 {built-in method setimage}
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 1 0.000 0.000 0.000 0.000 {cmp}
+ 5 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 14 0.000 0.000 0.000 0.000 {isinstance}
+ 38 0.000 0.000 0.000 0.000 {len}
+ 5 0.000 0.000 0.000 0.000 {max}
+ 15 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'read' of 'bz2.BZ2File' objects}
+ 28 0.000 0.000 0.000 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 16 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 4 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 204 0.000 0.000 0.000 0.000 {ord}
+ 12 0.000 0.000 0.000 0.000 {range}
+
+
+0.0004 0.0003 0.0023 0.0470 0.0012 0.023 testimages\testmap1_0002.tif.gz
+Mon Mar 16 12:21:12 2009 stats
+
+ 713 function calls in 0.004 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.004 0.004 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
+ 1 0.000 0.000 0.000 0.000 BmpImagePlugin.py:55(_accept)
+ 1 0.000 0.000 0.000 0.000 BufrStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
+ 2 0.000 0.000 0.000 0.000 GbrImagePlugin.py:18(i32)
+ 1 0.000 0.000 0.000 0.000 GbrImagePlugin.py:21(_accept)
+ 1 0.000 0.000 0.000 0.000 GifImagePlugin.py:47(_accept)
+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 Hdf5StubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 IcnsImagePlugin.py:204(<lambda>)
+ 1 0.000 0.000 0.000 0.000 IcoImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 ImImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.001 0.001 Image.py:1879(open)
+ 1 0.000 0.000 0.000 0.000 Image.py:280(preinit)
+ 2 0.000 0.000 0.000 0.000 Image.py:361(_getdecoder)
+ 1 0.000 0.000 0.000 0.000 Image.py:377(_getencoder)
+ 5 0.000 0.000 0.000 0.000 Image.py:439(__init__)
+ 1 0.000 0.000 0.000 0.000 Image.py:448(_new)
+ 4 0.000 0.000 0.000 0.000 Image.py:484(__getattr__)
+ 1 0.000 0.000 0.000 0.000 Image.py:503(tostring)
+ 3 0.000 0.000 0.000 0.000 Image.py:587(load)
+ 1 0.000 0.000 0.000 0.000 Image.py:638(convert)
+ 5 0.000 0.000 0.000 0.000 Image.py:82(isStringType)
+ 3 0.000 0.000 0.000 0.000 Image.py:91(isTupleType)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:115(load)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:219(load_prepare)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:228(load_end)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:49(_tilesort)
+ 4 0.000 0.000 0.000 0.000 ImageFile.py:508(_safe_read)
+ 4 0.000 0.000 0.001 0.000 ImageFile.py:63(__init__)
+ 1 0.000 0.000 0.000 0.000 ImtImagePlugin.py:37(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:62(field)
+ 1 0.000 0.000 0.000 0.000 JpegImagePlugin.py:231(_accept)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:28(i32)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:31(_accept)
+ 1 0.000 0.000 0.000 0.000 PcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 PngImagePlugin.py:261(_accept)
+ 1 0.000 0.000 0.000 0.000 PpmImagePlugin.py:40(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:157(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:168(__init__)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:180(reset)
+ 14 0.000 0.000 0.000 0.000 TiffImagePlugin.py:199(__getitem__)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:209(get)
+ 11 0.000 0.000 0.000 0.000 TiffImagePlugin.py:215(getscalar)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:230(has_key)
+ 8 0.000 0.000 0.000 0.000 TiffImagePlugin.py:255(load_short)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:262(load_long)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:269(load_rational)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:295(load)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:445(_open)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:477(_seek)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:497(_decoder)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:521(_setup)
+ 37 0.000 0.000 0.000 0.000 TiffImagePlugin.py:64(il16)
+ 26 0.000 0.000 0.000 0.000 TiffImagePlugin.py:66(il32)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.001 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 6 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:208(read)
+ 3 0.000 0.000 0.001 0.000 gzip.py:245(_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:295(_add_read_data)
+ 2 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 4 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.004 0.004 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 string.py:306(join)
+ 4 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(__init__)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:39(_readheader)
+ 1 0.000 0.000 0.003 0.003 tifimage.py:58(read)
+ 1 0.000 0.000 0.000 0.000 {_imaging.new}
+ 3 0.000 0.000 0.000 0.000 {apply}
+ 1 0.000 0.000 0.000 0.000 {built-in method convert}
+ 2 0.000 0.000 0.000 0.000 {built-in method decode}
+ 2 0.000 0.000 0.000 0.000 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method encode}
+ 2 0.000 0.000 0.000 0.000 {built-in method pixel_access}
+ 1 0.000 0.000 0.000 0.000 {built-in method setimage}
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 1 0.000 0.000 0.000 0.000 {cmp}
+ 5 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 14 0.000 0.000 0.000 0.000 {isinstance}
+ 44 0.000 0.000 0.000 0.000 {len}
+ 3 0.000 0.000 0.000 0.000 {max}
+ 15 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 28 0.000 0.000 0.000 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 50 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 16 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 6 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 208 0.000 0.000 0.000 0.000 {ord}
+ 12 0.000 0.000 0.000 0.000 {range}
+ 4 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
diff --git a/test/test_all.bat b/test/test_all.bat
new file mode 100644
index 0000000..aee516e
--- /dev/null
+++ b/test/test_all.bat
@@ -0,0 +1,26 @@
+cd ..
+set PYT=c:\python25\python
+%PYT% setup.py build --compiler=mingw32
+set PYTHONPATH=..\build\lib.win32-2.5
+cd test
+
+%PYT% testheadernotsingleton.py
+%PYT% testadscimage.py
+%PYT% testbrukerimage.py
+%PYT% testedfimage.py
+%PYT% testfabioimage.py
+%PYT% testfilenames.py
+%PYT% test_filename_steps.py
+%PYT% test_file_series.py
+%PYT% testfit2dmaskimage.py
+%PYT% testGEimage.py
+%PYT% testmar345image.py
+%PYT% testmccdimage.py
+%PYT% testopenheader.py
+%PYT% testopenimage.py
+%PYT% testOXDimage.py
+%PYT% testtifgz.py
+
+%PYT% test_all_images.py > win32_benchmark
+%PYT% benchheader.py > win32_benchheaders
+:END
diff --git a/test/test_all.sh b/test/test_all.sh
new file mode 100755
index 0000000..164a018
--- /dev/null
+++ b/test/test_all.sh
@@ -0,0 +1,32 @@
+
+echo "Deprecated !!!"
+exit 0
+
+cd ..
+export PYT=python
+$PYT setup.py build
+export PYTHONPATH=../build/lib.linux-x86_64-2.6
+cd test
+
+# ls *.py | awk '{print "$PYT",$1}'
+
+$PYT testheadernotsingleton.py
+$PYT testadscimage.py
+$PYT testbrukerimage.py
+$PYT testedfimage.py
+$PYT testfabioimage.py
+$PYT testfilenames.py
+$PYT test_filename_steps.py
+$PYT test_file_series.py
+$PYT testfit2dmaskimage.py
+$PYT testGEimage.py
+$PYT testmar345image.py
+$PYT testmccdimage.py
+$PYT testopenheader.py
+$PYT testopenimage.py
+$PYT testOXDimage.py
+$PYT testtifgz.py
+
+$PYT test_all_images.py > `hostname`_benchmark
+$PYT benchheader.py > `hostname`_benchheaders
+
diff --git a/test/testcbfimage.py b/test/testcbfimage.py
index 8009c8f..c3946bc 100755
--- a/test/testcbfimage.py
+++ b/test/testcbfimage.py
@@ -115,12 +115,63 @@ class test_cbfimage_reader(unittest.TestCase):
self.assertAlmostEqual(0, delta)
logger.info("Timing for Cython method : %.3fs, max delta= %s" % (tCython, delta))
+ def test_consitency_manual(self):
+ """
+ Test if an image can be read and saved and the results are "similar"
+ """
+ name = os.path.basename(self.cbf_filename)
+ obj = fabio.open(self.cbf_filename)
+ new = fabio.cbfimage.cbfimage(data=obj.data, header=obj.header)
+ new.write(os.path.join(self.tempdir, name))
+ other = fabio.open(os.path.join(self.tempdir, name))
+ self.assertEqual(abs(obj.data - other.data).max(), 0, "data are the same")
+ for key in obj.header:
+ if key in[ "filename", "X-Binary-Size-Padding"]:
+ continue
+ self.assertTrue(key in other.header, "Key %s is in header" % key)
+ self.assertEqual(obj.header[key], other.header[key], "value are the same for key %s [%s|%s]" % (key, obj.header[key], other.header[key]))
+
+ def test_consitency_convert(self):
+ """
+ Test if an image can be read and saved and the results are "similar"
+ """
+ name = os.path.basename(self.cbf_filename)
+ obj = fabio.open(self.cbf_filename)
+ new = obj.convert("cbf")
+ new.write(os.path.join(self.tempdir, name))
+ other = fabio.open(os.path.join(self.tempdir, name))
+ self.assertEqual(abs(obj.data - other.data).max(), 0, "data are the same")
+ for key in obj.header:
+ if key in[ "filename", "X-Binary-Size-Padding"]:
+ continue
+ self.assertTrue(key in other.header, "Key %s is in header" % key)
+ self.assertEqual(obj.header[key], other.header[key], "value are the same for key %s [%s|%s]" % (key, obj.header[key], other.header[key]))
+
+ def test_unicode(self):
+ """
+ Test if an image can be read and saved to an unicode named
+ """
+ name = unicode(os.path.basename(self.cbf_filename))
+ obj = fabio.open(self.cbf_filename)
+ obj.write(os.path.join(self.tempdir, name))
+ other = fabio.open(os.path.join(self.tempdir, name))
+ self.assertEqual(abs(obj.data - other.data).max(), 0, "data are the same")
+ for key in obj.header:
+ if key in[ "filename", "X-Binary-Size-Padding"]:
+ continue
+ self.assertTrue(key in other.header, "Key %s is in header" % key)
+ self.assertEqual(obj.header[key], other.header[key], "value are the same for key %s [%s|%s]" % (key, obj.header[key], other.header[key]))
+
def test_suite_all_cbf():
testSuite = unittest.TestSuite()
testSuite.addTest(test_cbfimage_reader("test_read"))
testSuite.addTest(test_cbfimage_reader("test_write"))
testSuite.addTest(test_cbfimage_reader("test_byte_offset"))
+ testSuite.addTest(test_cbfimage_reader("test_consitency_manual"))
+ testSuite.addTest(test_cbfimage_reader("test_consitency_convert"))
+ testSuite.addTest(test_cbfimage_reader("test_unicode"))
+
return testSuite
if __name__ == '__main__':
diff --git a/test/testedfimage.py b/test/testedfimage.py
old mode 100644
new mode 100755
index f6e0cd9..9455d60
--- a/test/testedfimage.py
+++ b/test/testedfimage.py
@@ -69,11 +69,11 @@ History-1 = something=something else;
""" check readable"""
obj = edfimage()
obj.read(self.filename)
- self.assertEqual(obj.dim1 , 256)
- self.assertEqual(obj.dim2 , 256)
- self.assertEqual(obj.bpp , 4)
- self.assertEqual(obj.bytecode, numpy.float32)
- self.assertEqual(obj.data.shape, (256, 256))
+ self.assertEqual(obj.dim1 , 256, msg="dim1!=256 for file: %s" % self.filename)
+ self.assertEqual(obj.dim2 , 256, msg="dim2!=256 for file: %s" % self.filename)
+ self.assertEqual(obj.bpp , 4, msg="bpp!=4 for file: %s" % self.filename)
+ self.assertEqual(obj.bytecode, numpy.float32, msg="bytecode!=flot32 for file: %s" % self.filename)
+ self.assertEqual(obj.data.shape, (256, 256), msg="shape!=(256,256) for file: %s" % self.filename)
self.assertEqual(obj.header['History-1'],
"something=something else")
@@ -260,6 +260,20 @@ class testedfmultiframe(unittest.TestCase):
self.assertEqual((fabio.open(self.multiFrameFilename, 0).data - self.frame0.data).max(), 0, "openimage_multiframes: Same data for frame 0")
self.assertEqual((fabio.open(self.multiFrameFilename, 1).data - self.frame1.data).max(), 0, "openimage_multiframes: Same data for frame 1")
+class testedffastread(unittest.TestCase):
+ """
+ Read some test images with their data-block compressed.
+ Z-Compression and Gzip compression are implemented Bzip2 and byte offet are experimental
+ """
+ def setUp(self):
+ self.refFilename = UtilsTest.getimage("MultiFrame-Frame0.edf.bz2")
+ self.fastFilename = self.refFilename[:-4]
+ def test_fastread(self):
+ ref = fabio.open(self.refFilename)
+ refdata = ref.data
+ obt = ref.fastReadData(self.fastFilename)
+ self.assertEqual(abs(obt - refdata).max(), 0, "testedffastread: Same data")
+
def test_suite_all_edf():
testSuite = unittest.TestSuite()
testSuite.addTest(testflatedfs("test_read"))
@@ -277,6 +291,8 @@ def test_suite_all_edf():
testSuite.addTest(testedfmultiframe("text_next_mono"))
testSuite.addTest(testedfmultiframe("test_previous_multi"))
testSuite.addTest(testedfmultiframe("test_openimage_multiframes"))
+ testSuite.addTest(testedffastread("test_fastread"))
+
return testSuite
if __name__ == '__main__':
diff --git a/test/win32_benchheaders b/test/win32_benchheaders
new file mode 100644
index 0000000..d8c759d
--- /dev/null
+++ b/test/win32_benchheaders
@@ -0,0 +1,46 @@
+ 0.002363 testimages\Cr8F8140k103.0026
+ 0.066067 testimages\Cr8F8140k103.0026.bz2
+ 0.001853 testimages\Cr8F8140k103.0026.gz
+ 0.002819 testimages\F2K_Seb_Lyso0675.edf
+ 0.121077 testimages\F2K_Seb_Lyso0675.edf.bz2
+ 0.002366 testimages\F2K_Seb_Lyso0675.edf.gz
+ 0.001428 testimages\GE_aSI_detector_image_1529
+ 0.082350 testimages\GE_aSI_detector_image_1529.bz2
+ 0.003077 testimages\GE_aSI_detector_image_1529.gz
+ 0.000956 testimages\b191_1_9_1.img
+ 0.096141 testimages\b191_1_9_1.img.bz2
+ 0.002030 testimages\b191_1_9_1.img.gz
+ 0.001849 testimages\b191_1_9_1_uncompressed.img
+ 0.107067 testimages\b191_1_9_1_uncompressed.img.bz2
+ 0.001737 testimages\b191_1_9_1_uncompressed.img.gz
+ 0.001170 testimages\corkcont2_H_0089.mccd
+ 0.091742 testimages\corkcont2_H_0089.mccd.bz2
+ 0.002270 testimages\corkcont2_H_0089.mccd.gz
+ 0.001537 testimages\example.mar2300
+ 0.257166 testimages\example.mar2300.bz2
+ 0.002286 testimages\example.mar2300.gz
+ 0.001194 testimages\face.edf
+ 0.002741 testimages\face.edf.bz2
+ 0.003132 testimages\face.edf.gz
+ 0.000567 testimages\face.msk
+ 0.001318 testimages\face.msk.bz2
+ 0.000881 testimages\face.msk.gz
+ 0.001576 testimages\fit2d_click.edf
+ 0.002984 testimages\fit2d_click.edf.bz2
+ 0.016475 testimages\fit2d_click.edf.gz
+ 0.000976 testimages\fit2d_click.msk
+ 0.000984 testimages\fit2d_click.msk.bz2
+ 0.003222 testimages\fit2d_click.msk.gz
+ 0.062191 testimages\mb_LP_1_001.img
+ 1.668834 testimages\mb_LP_1_001.img.bz2
+ 0.181976 testimages\mb_LP_1_001.img.gz
+ 0.058940 testimages\mb_LP_1_002.img
+ 0.000631 testimages\oPPA_5grains_0001.tif
+ 0.028324 testimages\oPPA_5grains_0001.tif.bz2
+ 0.004554 testimages\oPPA_5grains_0001.tif.gz
+ 0.000595 testimages\somedata_0001.mccd
+ 0.113065 testimages\somedata_0001.mccd.bz2
+ 0.001092 testimages\somedata_0001.mccd.gz
+ 0.000538 testimages\testmap1_0002.tif
+ 0.000787 testimages\testmap1_0002.tif.bz2
+ 0.001096 testimages\testmap1_0002.tif.gz
diff --git a/test/win32_benchmark b/test/win32_benchmark
new file mode 100644
index 0000000..6fe2c51
--- /dev/null
+++ b/test/win32_benchmark
@@ -0,0 +1,3285 @@
+I/O 1 : Time to read the image
+I/O 2 : Time to read the image (repeat
+Fabio : Time for fabio to read the image
+Shell : Time for shell to do decompression
+Python : Time for python to do decompression
+
+I/O 1 I/O 2 Fabio Shell Python Size/MB
+0.0025 0.0020 0.0095 0.508 testimages\Cr8F8140k103.0026
+Mon Mar 16 12:20:12 2009 stats
+
+ 637 function calls in 0.011 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.011 0.011 <string>:1(<module>)
+ 1 0.001 0.001 0.002 0.002 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.010 0.010 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.011 0.011 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.005 0.005 readbytestream.py:27(readbytestream)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 6 0.002 0.000 0.002 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0012 0.0009 0.1342 0.1880 0.0778 0.508 testimages\Cr8F8140k103.0026.bz2
+Mon Mar 16 12:20:14 2009 stats
+
+ 637 function calls in 0.137 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.137 0.137 <string>:1(<module>)
+ 1 0.002 0.002 0.054 0.054 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.083 0.083 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.001 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.137 0.137 openimage.py:68(openimage)
+ 1 0.000 0.000 0.054 0.054 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.025 0.025 readbytestream.py:27(readbytestream)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 6 0.126 0.021 0.126 0.021 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'bz2.BZ2File' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tell' of 'bz2.BZ2File' objects}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.array}
+ 1 0.002 0.002 0.002 0.002 {numpy.core.multiarray.fromstring}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0015 0.0011 0.0306 0.1250 0.0194 0.508 testimages\Cr8F8140k103.0026.gz
+Mon Mar 16 12:20:14 2009 stats
+
+ 814 function calls in 0.032 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.032 0.032 <string>:1(<module>)
+ 1 0.001 0.001 0.003 0.003 brukerimage.py:35(_readheader)
+ 1 0.000 0.000 0.030 0.030 brukerimage.py:84(read)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 7 0.002 0.000 0.021 0.003 gzip.py:208(read)
+ 12 0.000 0.000 0.019 0.002 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 12 0.005 0.000 0.006 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:360(tell)
+ 1 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.032 0.032 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.024 0.024 readbytestream.py:27(readbytestream)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 12 0.011 0.001 0.011 0.001 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 6 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 25 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 80 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.003 0.003 0.003 0.003 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 127 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 58 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 92 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 184 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 12 0.000 0.000 0.000 0.000 {min}
+ 1 0.002 0.002 0.002 0.002 {numpy.core.multiarray.array}
+ 1 0.002 0.002 0.002 0.002 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 2 0.000 0.000 0.000 0.000 {range}
+ 14 0.001 0.000 0.001 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0350 0.0294 0.0529 8.003 testimages\F2K_Seb_Lyso0675.edf
+Mon Mar 16 12:20:14 2009 stats
+
+ 624 function calls in 0.052 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.052 0.052 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.002 0.002 0.002 0.002 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.049 0.049 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.051 0.051 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 10 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 8 0.027 0.003 0.027 0.003 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.019 0.019 0.019 0.019 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.0102 0.0091 1.3386 1.6250 1.2248 8.003 testimages\F2K_Seb_Lyso0675.edf.bz2
+Mon Mar 16 12:20:20 2009 stats
+
+ 624 function calls in 1.319 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 1.319 1.319 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.001 0.001 0.061 0.061 edfimage.py:55(_readheader)
+ 1 0.000 0.000 1.252 1.252 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 1.318 1.318 openimage.py:68(openimage)
+ 1 0.001 0.001 0.065 0.065 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 10 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 8 1.301 0.163 1.301 0.163 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.012 0.012 0.012 0.012 {numpy.core.multiarray.fromstring}
+
+
+0.0115 0.0139 0.2080 0.3750 0.1809 8.003 testimages\F2K_Seb_Lyso0675.edf.gz
+Mon Mar 16 12:20:20 2009 stats
+
+ 841 function calls in 0.209 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.209 0.209 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.002 0.002 0.003 0.003 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.206 0.206 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 8 0.002 0.000 0.189 0.024 gzip.py:208(read)
+ 17 0.001 0.000 0.187 0.011 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 16 0.032 0.002 0.044 0.003 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.208 0.208 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 16 0.125 0.008 0.125 0.008 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 43 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 90 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 68 0.018 0.000 0.018 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 180 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 91 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.014 0.014 0.014 0.014 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 18 0.011 0.001 0.011 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0174 0.0233 0.0333 8.008 testimages\GE_aSI_detector_image_1529
+Mon Mar 16 12:20:20 2009 stats
+
+ 475 function calls in 0.039 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.039 0.039 <string>:1(<module>)
+ 1 0.001 0.001 0.002 0.002 GEimage.py:183(_readheader)
+ 1 0.000 0.000 0.038 0.038 GEimage.py:196(read)
+ 1 0.000 0.000 0.000 0.000 GEimage.py:211(_makeframename)
+ 1 0.001 0.001 0.035 0.035 GEimage.py:217(_readframe)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.038 0.038 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 130 0.000 0.000 0.001 0.000 struct.py:77(unpack)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 157 0.022 0.000 0.022 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 130 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 1 0.012 0.012 0.012 0.012 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.0047 0.0043 1.0045 1.3290 0.9405 8.008 testimages\GE_aSI_detector_image_1529.bz2
+Mon Mar 16 12:20:24 2009 stats
+
+ 477 function calls in 1.016 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 1.016 1.016 <string>:1(<module>)
+ 1 0.001 0.001 0.002 0.002 GEimage.py:183(_readheader)
+ 1 0.000 0.000 0.970 0.970 GEimage.py:196(read)
+ 1 0.000 0.000 0.000 0.000 GEimage.py:211(_makeframename)
+ 1 0.001 0.001 0.028 0.028 GEimage.py:217(_readframe)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.001 0.000 0.939 0.470 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.938 0.469 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 1.015 1.015 openimage.py:68(openimage)
+ 1 0.001 0.001 0.045 0.045 openimage.py:94(_openimage)
+ 130 0.001 0.000 0.001 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'cStringIO.StringI' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.982 0.491 0.982 0.491 {method 'read' of 'bz2.BZ2File' objects}
+ 156 0.015 0.000 0.015 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 130 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 1 0.012 0.012 0.012 0.012 {numpy.core.multiarray.fromstring}
+
+
+0.0079 0.0071 0.2199 0.3750 0.1330 8.008 testimages\GE_aSI_detector_image_1529.gz
+Mon Mar 16 12:20:26 2009 stats
+
+ 683 function calls in 0.166 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.166 0.166 <string>:1(<module>)
+ 1 0.001 0.001 0.002 0.002 GEimage.py:183(_readheader)
+ 1 0.000 0.000 0.165 0.165 GEimage.py:196(read)
+ 1 0.000 0.000 0.000 0.000 GEimage.py:211(_makeframename)
+ 1 0.001 0.001 0.026 0.026 GEimage.py:217(_readframe)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.136 0.068 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.136 0.068 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.001 0.001 0.136 0.068 gzip.py:208(read)
+ 14 0.000 0.000 0.135 0.010 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.033 0.003 0.044 0.003 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.166 0.166 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 132 0.001 0.000 0.001 0.000 struct.py:77(unpack)
+ 13 0.082 0.006 0.082 0.006 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 27 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'cStringIO.StringI' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 156 0.014 0.000 0.014 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 77 0.008 0.000 0.008 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 132 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 13 0.000 0.000 0.000 0.000 {min}
+ 1 0.011 0.011 0.011 0.011 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 15 0.011 0.001 0.011 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0017 0.0007 0.8216 0.256 testimages\b191_1_9_1.img
+Mon Mar 16 12:20:28 2009 stats
+
+ 128 function calls in 0.758 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.758 0.758 <string>:1(<module>)
+ 1 0.743 0.743 0.757 0.757 OXDimage.py:145(read)
+ 1 0.001 0.001 0.001 0.001 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.758 0.758 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 2 0.003 0.002 0.003 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.002 0.002 0.002 0.002 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 8 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.001 0.000 0.001 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 1 0.006 0.006 0.006 0.006 {range}
+
+
+0.0179 0.0004 0.7436 0.0930 0.0380 0.256 testimages\b191_1_9_1.img.bz2
+Mon Mar 16 12:20:28 2009 stats
+
+ 128 function calls in 0.773 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.773 0.773 <string>:1(<module>)
+ 1 0.657 0.657 0.740 0.740 OXDimage.py:145(read)
+ 1 0.001 0.001 0.066 0.066 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.001 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.773 0.773 openimage.py:68(openimage)
+ 1 0.000 0.000 0.032 0.032 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 2 0.003 0.001 0.003 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.002 0.002 0.002 0.002 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 8 0.037 0.005 0.037 0.005 {method 'read' of 'bz2.BZ2File' objects}
+ 6 0.034 0.006 0.034 0.006 {method 'readline' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.031 0.010 0.031 0.010 {method 'seek' of 'bz2.BZ2File' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.006 0.006 0.006 0.006 {range}
+
+
+0.0141 0.0004 0.6509 0.0620 0.0056 0.256 testimages\b191_1_9_1.img.gz
+Mon Mar 16 12:20:30 2009 stats
+
+ 394 function calls in 0.660 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.660 0.660 <string>:1(<module>)
+ 1 0.642 0.642 0.659 0.659 OXDimage.py:145(read)
+ 1 0.001 0.001 0.002 0.002 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 22 0.001 0.000 0.006 0.000 gzip.py:208(read)
+ 6 0.000 0.000 0.000 0.000 gzip.py:240(_unread)
+ 11 0.000 0.000 0.006 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 11 0.001 0.000 0.001 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
+ 3 0.000 0.000 0.000 0.000 gzip.py:374(seek)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 6 0.000 0.000 0.001 0.000 gzip.py:391(readline)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.660 0.660 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 11 0.003 0.000 0.003 0.000 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 45 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 10 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.002 0.001 0.002 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.002 0.002 0.002 0.002 {method 'copy' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 19 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 70 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 46 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 4 0.006 0.001 0.006 0.001 {range}
+ 14 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0024 0.0024 0.0064 1.005 testimages\b191_1_9_1_uncompressed.img
+Mon Mar 16 12:20:30 2009 stats
+
+ 120 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 1 0.000 0.000 0.006 0.006 OXDimage.py:145(read)
+ 1 0.000 0.000 0.000 0.000 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 1 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.002 0.002 0.002 0.002 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 7 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.001 0.000 0.001 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.0021 0.0005 0.1782 0.1870 0.1076 1.005 testimages\b191_1_9_1_uncompressed.img.bz2
+Mon Mar 16 12:20:32 2009 stats
+
+ 120 function calls in 0.178 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.178 0.178 <string>:1(<module>)
+ 1 0.000 0.000 0.142 0.142 OXDimage.py:145(read)
+ 1 0.000 0.000 0.071 0.071 OXDimage.py:27(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
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+ 1 0.000 0.000 0.178 0.178 openimage.py:68(openimage)
+ 1 0.001 0.001 0.036 0.036 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
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+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.001 0.001 0.001 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 7 0.102 0.015 0.102 0.015 {method 'read' of 'bz2.BZ2File' objects}
+ 6 0.035 0.006 0.035 0.006 {method 'readline' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 3 0.036 0.012 0.036 0.012 {method 'seek' of 'bz2.BZ2File' objects}
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+ 45 0.002 0.000 0.002 0.000 {numpy.core.multiarray.fromstring}
+
+
+0.0030 0.0009 0.0189 0.0790 0.0152 1.005 testimages\b191_1_9_1_uncompressed.img.gz
+Mon Mar 16 12:20:32 2009 stats
+
+ 429 function calls in 0.020 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.020 0.020 <string>:1(<module>)
+ 1 0.000 0.000 0.019 0.019 OXDimage.py:145(read)
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+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 19 0.000 0.000 0.015 0.001 gzip.py:208(read)
+ 6 0.000 0.000 0.000 0.000 gzip.py:240(_unread)
+ 13 0.000 0.000 0.015 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.004 0.000 0.005 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
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+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 1 0.000 0.000 0.000 0.000 gzip.py:363(rewind)
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+ 6 0.000 0.000 0.001 0.000 gzip.py:391(readline)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.020 0.020 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 13 0.008 0.001 0.008 0.001 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 44 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 8 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.001 0.001 0.001 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 111 0.001 0.000 0.001 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 16 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 45 0.001 0.000 0.001 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 3 0.000 0.000 0.000 0.000 {range}
+ 16 0.001 0.000 0.001 0.000 {zlib.crc32}
+ 3 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0164 0.0176 0.2444 8.004 testimages\corkcont2_H_0089.mccd
+Mon Mar 16 12:20:32 2009 stats
+
+ 1304 function calls in 0.142 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.006 0.006 0.142 0.142 <string>:1(<module>)
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+ 1 0.001 0.001 0.049 0.049 Image.py:503(tostring)
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+ 1 0.000 0.000 0.050 0.050 Image.py:638(convert)
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+ 1 0.001 0.001 0.028 0.028 ImageFile.py:115(load)
+ 1 0.000 0.000 0.012 0.012 ImageFile.py:219(load_prepare)
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+ 1 0.000 0.000 0.002 0.002 TiffImagePlugin.py:445(_open)
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+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
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+ 1 0.000 0.000 0.136 0.136 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.023 0.023 string.py:306(join)
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+ 1 0.000 0.000 0.000 0.000 tifimage.py:39(_readheader)
+ 1 0.006 0.006 0.135 0.135 tifimage.py:58(read)
+ 1 0.012 0.012 0.012 0.012 {_imaging.new}
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+ 13 0.000 0.000 0.000 0.000 {isinstance}
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+ 267 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
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+ 2 0.000 0.000 0.000 0.000 {min}
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+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0034 0.0042 0.7445 0.8120 0.5688 8.004 testimages\corkcont2_H_0089.mccd.bz2
+Mon Mar 16 12:20:34 2009 stats
+
+ 1306 function calls in 0.748 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.006 0.006 0.748 0.748 <string>:1(<module>)
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+ 2 0.613 0.307 0.613 0.307 {method 'read' of 'bz2.BZ2File' objects}
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+
+
+0.0045 0.0051 0.2546 0.3130 0.1230 8.004 testimages\corkcont2_H_0089.mccd.gz
+Mon Mar 16 12:20:36 2009 stats
+
+ 1494 function calls in 0.258 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.005 0.005 0.258 0.258 <string>:1(<module>)
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+ 1 0.000 0.000 0.000 0.000 BufrStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
+ 2 0.000 0.000 0.000 0.000 GbrImagePlugin.py:18(i32)
+ 1 0.000 0.000 0.000 0.000 GbrImagePlugin.py:21(_accept)
+ 1 0.000 0.000 0.000 0.000 GifImagePlugin.py:47(_accept)
+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 Hdf5StubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 IcnsImagePlugin.py:204(<lambda>)
+ 1 0.000 0.000 0.000 0.000 IcoImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 ImImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.001 0.001 Image.py:1879(open)
+ 1 0.000 0.000 0.000 0.000 Image.py:280(preinit)
+ 1 0.000 0.000 0.000 0.000 Image.py:361(_getdecoder)
+ 1 0.000 0.000 0.000 0.000 Image.py:377(_getencoder)
+ 5 0.000 0.000 0.000 0.000 Image.py:439(__init__)
+ 1 0.000 0.000 0.000 0.000 Image.py:448(_new)
+ 4 0.000 0.000 0.000 0.000 Image.py:484(__getattr__)
+ 1 0.001 0.001 0.048 0.048 Image.py:503(tostring)
+ 3 0.000 0.000 0.000 0.000 Image.py:587(load)
+ 1 0.000 0.000 0.041 0.041 Image.py:638(convert)
+ 5 0.000 0.000 0.000 0.000 Image.py:82(isStringType)
+ 2 0.000 0.000 0.000 0.000 Image.py:91(isTupleType)
+ 1 0.001 0.001 0.019 0.019 ImageFile.py:115(load)
+ 1 0.000 0.000 0.010 0.010 ImageFile.py:219(load_prepare)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:228(load_end)
+ 2 0.000 0.000 0.000 0.000 ImageFile.py:508(_safe_read)
+ 4 0.000 0.000 0.001 0.000 ImageFile.py:63(__init__)
+ 1 0.000 0.000 0.000 0.000 ImtImagePlugin.py:37(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.000 0.000 IptcImagePlugin.py:62(field)
+ 1 0.000 0.000 0.000 0.000 JpegImagePlugin.py:231(_accept)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:28(i32)
+ 1 0.000 0.000 0.000 0.000 McIdasImagePlugin.py:31(_accept)
+ 1 0.000 0.000 0.000 0.000 PcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 PngImagePlugin.py:261(_accept)
+ 1 0.000 0.000 0.000 0.000 PpmImagePlugin.py:40(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:157(_accept)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:168(__init__)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:180(reset)
+ 14 0.000 0.000 0.000 0.000 TiffImagePlugin.py:199(__getitem__)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:209(get)
+ 11 0.000 0.000 0.000 0.000 TiffImagePlugin.py:215(getscalar)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:230(has_key)
+ 4 0.000 0.000 0.000 0.000 TiffImagePlugin.py:255(load_short)
+ 4 0.000 0.000 0.000 0.000 TiffImagePlugin.py:262(load_long)
+ 2 0.000 0.000 0.000 0.000 TiffImagePlugin.py:269(load_rational)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:295(load)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:445(_open)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:477(_seek)
+ 1 0.000 0.000 0.000 0.000 TiffImagePlugin.py:497(_decoder)
+ 1 0.000 0.000 0.001 0.001 TiffImagePlugin.py:521(_setup)
+ 31 0.000 0.000 0.000 0.000 TiffImagePlugin.py:64(il16)
+ 25 0.000 0.000 0.000 0.000 TiffImagePlugin.py:66(il32)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.122 0.061 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.122 0.061 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.001 0.001 0.122 0.061 gzip.py:208(read)
+ 13 0.000 0.000 0.120 0.009 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 12 0.040 0.003 0.051 0.004 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.253 0.253 openimage.py:68(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.023 0.023 string.py:306(join)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(__init__)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:39(_readheader)
+ 1 0.009 0.009 0.250 0.250 tifimage.py:58(read)
+ 1 0.010 0.010 0.010 0.010 {_imaging.new}
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 1 0.022 0.022 0.022 0.022 {built-in method convert}
+ 128 0.005 0.000 0.005 0.000 {built-in method decode}
+ 12 0.065 0.005 0.065 0.005 {built-in method decompress}
+ 256 0.024 0.000 0.024 0.000 {built-in method encode}
+ 2 0.000 0.000 0.000 0.000 {built-in method pixel_access}
+ 1 0.000 0.000 0.000 0.000 {built-in method setimage}
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
+ 4 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 13 0.000 0.000 0.000 0.000 {isinstance}
+ 59 0.000 0.000 0.000 0.000 {len}
+ 3 0.000 0.000 0.000 0.000 {max}
+ 267 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.023 0.012 0.023 0.012 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 151 0.003 0.000 0.003 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 66 0.003 0.000 0.003 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 14 0.000 0.000 0.000 0.000 {min}
+ 2 0.029 0.015 0.029 0.015 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 192 0.000 0.000 0.000 0.000 {ord}
+ 11 0.000 0.000 0.000 0.000 {range}
+ 14 0.011 0.001 0.011 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0100 0.0089 0.8983 3.471 testimages\example.mar2300
+Mon Mar 16 12:20:36 2009 stats
+
+ 231 function calls in 0.517 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.517 0.517 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:137(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:74(__init__)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.515 0.515 mar345image.py:19(read)
+ 1 0.001 0.001 0.001 0.001 mar345image.py:47(_readheader)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:116(splitdrive)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:158(split)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.517 0.517 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 re.py:186(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:227(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 15 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 17 0.000 0.000 0.000 0.000 {len}
+ 1 0.514 0.514 0.514 0.514 {mar345_io.unpack}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 15 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0077 0.0079 1.4724 1.0150 0.7642 3.471 testimages\example.mar2300.bz2
+Mon Mar 16 12:20:42 2009 stats
+
+ 236 function calls in 1.510 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 1.510 1.510 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:137(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:74(__init__)
+ 2 0.000 0.000 0.837 0.418 fabioimage.py:284(_open)
+ 2 0.001 0.001 0.836 0.418 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 1.383 1.383 mar345image.py:19(read)
+ 1 0.000 0.000 0.001 0.001 mar345image.py:47(_readheader)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:116(splitdrive)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:158(split)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 1.510 1.510 openimage.py:68(openimage)
+ 1 0.001 0.001 0.127 0.127 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 re.py:186(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:227(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 15 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 17 0.000 0.000 0.000 0.000 {len}
+ 1 0.545 0.545 0.545 0.545 {mar345_io.unpack}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.886 0.443 0.886 0.443 {method 'read' of 'bz2.BZ2File' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 15 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 1 0.074 0.074 0.074 0.074 {method 'write' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {nt.tmpfile}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0076 0.0078 0.6351 0.1410 0.0660 3.471 testimages\example.mar2300.gz
+Mon Mar 16 12:20:44 2009 stats
+
+ 419 function calls in 0.649 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.649 0.649 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:121(numstem)
+ 1 0.000 0.000 0.000 0.000 __init__.py:137(deconstruct_filename)
+ 1 0.000 0.000 0.000 0.000 __init__.py:74(__init__)
+ 2 0.000 0.000 0.127 0.064 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.127 0.064 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 2 0.001 0.000 0.066 0.033 gzip.py:208(read)
+ 14 0.000 0.000 0.065 0.005 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 13 0.012 0.001 0.017 0.001 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 1 0.000 0.000 0.648 0.648 mar345image.py:19(read)
+ 1 0.001 0.001 0.001 0.001 mar345image.py:47(_readheader)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:116(splitdrive)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:158(split)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.649 0.649 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 re.py:186(compile)
+ 1 0.000 0.000 0.000 0.000 re.py:227(_compile)
+ 1 0.000 0.000 0.000 0.000 string.py:246(strip)
+ 17 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 13 0.040 0.003 0.040 0.003 {built-in method decompress}
+ 1 0.000 0.000 0.000 0.000 {built-in method groups}
+ 1 0.000 0.000 0.000 0.000 {built-in method match}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 44 0.000 0.000 0.000 0.000 {len}
+ 1 0.519 0.519 0.519 0.519 {mar345_io.unpack}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 3 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'get' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 58 0.008 0.000 0.008 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 67 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'splitlines' of 'str' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'update' of 'dict' objects}
+ 1 0.060 0.060 0.060 0.060 {method 'write' of 'file' objects}
+ 13 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {nt.tmpfile}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 11 0.000 0.000 0.000 0.000 {range}
+ 15 0.005 0.000 0.005 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0046 0.0005 0.0012 0.215 testimages\face.edf
+Mon Mar 16 12:20:44 2009 stats
+
+ 119 function calls in 0.001 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.001 0.001 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.001 0.001 openimage.py:68(openimage)
+ 1 0.000 0.000 0.000 0.000 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 7 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
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+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
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+ 2 0.000 0.000 0.000 0.000 {open}
+
+
+0.0016 0.0002 0.0045 0.0620 0.0036 0.215 testimages\face.edf.bz2
+Mon Mar 16 12:20:44 2009 stats
+
+ 119 function calls in 0.005 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.005 0.005 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.004 0.004 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.005 0.005 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 7 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.004 0.001 0.004 0.001 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+
+
+0.0003 0.0003 0.0038 0.0620 0.0030 0.215 testimages\face.edf.gz
+Mon Mar 16 12:20:44 2009 stats
+
+ 208 function calls in 0.005 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.005 0.005 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.001 0.001 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.003 0.003 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
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+ 4 0.000 0.000 0.003 0.001 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 3 0.000 0.000 0.001 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.005 0.005 openimage.py:68(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 3 0.002 0.001 0.002 0.001 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
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+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 14 0.000 0.000 0.000 0.000 {len}
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+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
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+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 31 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 3 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 5 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0007 0.0004 0.0054 0.008 testimages\face.msk
+Mon Mar 16 12:20:44 2009 stats
+
+ 82 function calls in 0.006 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.006 0.006 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.002 0.002 0.005 0.005 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.006 0.006 openimage.py:68(openimage)
+ 1 0.000 0.000 0.000 0.000 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 9 0.000 0.000 0.000 0.000 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.003 0.003 0.003 0.003 {numpy.core.multiarray.where}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.zeros}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0003 0.0002 0.0057 0.0630 0.0012 0.008 testimages\face.msk.bz2
+Mon Mar 16 12:20:44 2009 stats
+
+ 82 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.001 0.001 0.006 0.006 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
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+ 9 0.000 0.000 0.000 0.000 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 3 0.001 0.000 0.001 0.000 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.003 0.003 0.003 0.003 {numpy.core.multiarray.where}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.zeros}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0004 0.0004 0.0056 0.0630 0.0010 0.008 testimages\face.msk.gz
+Mon Mar 16 12:20:44 2009 stats
+
+ 167 function calls in 0.007 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.007 0.007 <string>:1(<module>)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.001 0.001 0.005 0.005 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 3 0.000 0.000 0.001 0.000 gzip.py:208(read)
+ 3 0.000 0.000 0.001 0.000 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 3 0.000 0.000 0.000 0.000 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.007 0.007 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 3 0.000 0.000 0.000 0.000 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 9 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 9 0.000 0.000 0.000 0.000 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
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+ 31 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 3 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.003 0.003 0.003 0.003 {numpy.core.multiarray.where}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.zeros}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 1 0.000 0.000 0.000 0.000 {range}
+ 5 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.1201 0.0069 0.0154 4.001 testimages\fit2d_click.edf
+Mon Mar 16 12:20:44 2009 stats
+
+ 119 function calls in 0.025 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.025 0.025 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.023 0.023 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.025 0.025 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {apply}
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+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
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+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.006 0.001 0.006 0.001 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.016 0.016 0.016 0.016 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.0030 0.0005 0.0681 0.1250 0.0623 4.001 testimages\fit2d_click.edf.bz2
+Mon Mar 16 12:20:44 2009 stats
+
+ 119 function calls in 0.067 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.067 0.067 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
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+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.002 0.002 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.062 0.062 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.065 0.065 openimage.py:68(openimage)
+ 1 0.000 0.000 0.003 0.003 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 7 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 4 0.057 0.014 0.057 0.014 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.006 0.006 0.006 0.006 {numpy.core.multiarray.fromstring}
+
+
+0.0008 0.0004 0.0632 0.1410 0.0437 4.001 testimages\fit2d_click.edf.gz
+Mon Mar 16 12:20:44 2009 stats
+
+ 238 function calls in 0.063 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.063 0.063 <string>:1(<module>)
+ 2 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1321(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:959(debug)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.000 0.000 0.000 0.000 edfimage.py:153(swap_needed)
+ 1 0.000 0.000 0.011 0.011 edfimage.py:55(_readheader)
+ 1 0.000 0.000 0.055 0.055 edfimage.py:87(read)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 4 0.004 0.001 0.052 0.013 gzip.py:208(read)
+ 6 0.000 0.000 0.048 0.008 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 5 0.015 0.003 0.023 0.005 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.001 0.001 0.062 0.062 openimage.py:68(openimage)
+ 1 0.000 0.000 0.007 0.007 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 2 0.000 0.000 0.000 0.000 {apply}
+ 5 0.024 0.005 0.024 0.005 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 18 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 7 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'lstrip' of 'str' objects}
+ 47 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rstrip' of 'str' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 5 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.008 0.008 0.008 0.008 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 7 0.007 0.001 0.007 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0009 0.0003 0.0767 0.126 testimages\fit2d_click.msk
+Mon Mar 16 12:20:44 2009 stats
+
+ 82 function calls in 0.081 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.081 0.081 <string>:1(<module>)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.014 0.014 0.080 0.080 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.081 0.081 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 9 0.007 0.001 0.007 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.057 0.057 0.057 0.057 {numpy.core.multiarray.where}
+ 1 0.002 0.002 0.002 0.002 {numpy.core.multiarray.zeros}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0017 0.0003 0.0777 0.0620 0.0022 0.126 testimages\fit2d_click.msk.bz2
+Mon Mar 16 12:20:44 2009 stats
+
+ 82 function calls in 0.080 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.080 0.080 <string>:1(<module>)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fit2dmaskimage.py:19(_readheader)
+ 1 0.012 0.012 0.079 0.079 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.080 0.080 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 2 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 9 0.007 0.001 0.007 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 3 0.001 0.000 0.001 0.000 {method 'read' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.057 0.057 0.057 0.057 {numpy.core.multiarray.where}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.zeros}
+ 1 0.000 0.000 0.000 0.000 {range}
+
+
+0.0021 0.0003 0.0750 0.0630 0.0020 0.126 testimages\fit2d_click.msk.gz
+Mon Mar 16 12:20:46 2009 stats
+
+ 189 function calls in 0.077 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.000 0.000 0.077 0.077 <string>:1(<module>)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.001 0.001 fit2dmaskimage.py:19(_readheader)
+ 1 0.012 0.012 0.075 0.075 fit2dmaskimage.py:36(read)
+ 2 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 2 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 6 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 3 0.000 0.000 0.003 0.001 gzip.py:208(read)
+ 2 0.000 0.000 0.002 0.001 gzip.py:245(_read)
+ 2 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:295(_add_read_data)
+ 2 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 2 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 2 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 4 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 2 0.000 0.000 0.000 0.000 gzip.py:60(__init__)
+ 2 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 numeric.py:1461(ones)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.077 0.077 openimage.py:68(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:94(_openimage)
+ 4 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 2 0.001 0.001 0.001 0.001 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 8 0.000 0.000 0.000 0.000 {len}
+ 2 0.000 0.000 0.000 0.000 {max}
+ 9 0.006 0.001 0.006 0.001 {method 'astype' of 'numpy.ndarray' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'fill' of 'numpy.ndarray' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 46 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'tostring' of 'numpy.ndarray' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 2 0.000 0.000 0.000 0.000 {min}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.array}
+ 1 0.000 0.000 0.000 0.000 {numpy.core.multiarray.empty}
+ 2 0.000 0.000 0.000 0.000 {numpy.core.multiarray.fromstring}
+ 1 0.054 0.054 0.054 0.054 {numpy.core.multiarray.where}
+ 1 0.001 0.001 0.001 0.001 {numpy.core.multiarray.zeros}
+ 2 0.000 0.000 0.000 0.000 {open}
+ 4 0.000 0.000 0.000 0.000 {ord}
+ 1 0.000 0.000 0.000 0.000 {range}
+ 4 0.000 0.000 0.000 0.000 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0377 0.0507 0.2064 18.000 testimages\mb_LP_1_001.img
+Mon Mar 16 12:20:46 2009 stats
+
+ 183 function calls in 0.210 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.210 0.210 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.003 0.003 0.204 0.204 adscimage.py:25(read)
+ 1 0.000 0.000 0.074 0.074 adscimage.py:71(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.003 0.003 0.208 0.208 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 20 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 17 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.060 0.060 0.060 0.060 {method 'byteswap' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.040 0.020 0.040 0.020 {method 'read' of 'file' objects}
+ 19 0.074 0.004 0.074 0.004 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 1 0.027 0.027 0.027 0.027 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.1270 0.0125 4.6505 3.4060 2.6507 18.000 testimages\mb_LP_1_001.img.bz2
+Mon Mar 16 12:21:00 2009 stats
+
+ 183 function calls in 4.413 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 4.413 4.413 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.002 0.002 4.356 4.356 adscimage.py:25(read)
+ 1 0.000 0.000 1.657 1.657 adscimage.py:71(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.001 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.002 0.002 4.411 4.411 openimage.py:68(openimage)
+ 1 0.001 0.001 0.054 0.054 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 20 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 17 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.051 0.051 0.051 0.051 {method 'byteswap' of 'numpy.ndarray' objects}
+ 1 0.001 0.001 0.001 0.001 {method 'close' of 'bz2.BZ2File' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 2.626 1.313 2.626 1.313 {method 'read' of 'bz2.BZ2File' objects}
+ 19 1.657 0.087 1.657 0.087 {method 'readline' of 'bz2.BZ2File' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.045 0.045 0.045 0.045 {method 'seek' of 'bz2.BZ2File' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 1 0.026 0.026 0.026 0.026 {numpy.core.multiarray.fromstring}
+
+
+0.1923 0.0227 0.5979 1.0000 0.3347 18.000 testimages\mb_LP_1_001.img.gz
+Mon Mar 16 12:21:04 2009 stats
+
+ 1121 function calls in 0.607 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.607 0.607 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.003 0.003 0.601 0.601 adscimage.py:25(read)
+ 1 0.001 0.001 0.179 0.179 adscimage.py:71(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 3 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 3 0.000 0.000 0.001 0.000 fabioimage.py:314(_compressed_stream)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 3 0.000 0.000 0.000 0.000 gzip.py:157(_init_read)
+ 3 0.000 0.000 0.000 0.000 gzip.py:161(_read_gzip_header)
+ 3 0.000 0.000 0.000 0.000 gzip.py:18(U32)
+ 37 0.019 0.001 0.485 0.013 gzip.py:208(read)
+ 19 0.005 0.000 0.005 0.000 gzip.py:240(_unread)
+ 75 0.002 0.000 0.466 0.006 gzip.py:245(_read)
+ 1 0.000 0.000 0.000 0.000 gzip.py:27(LOWU32)
+ 74 0.104 0.001 0.138 0.002 gzip.py:295(_add_read_data)
+ 1 0.000 0.000 0.000 0.000 gzip.py:301(_read_eof)
+ 3 0.000 0.000 0.000 0.000 gzip.py:315(close)
+ 3 0.000 0.000 0.000 0.000 gzip.py:334(__del__)
+ 2 0.000 0.000 0.000 0.000 gzip.py:39(read32)
+ 19 0.005 0.000 0.178 0.009 gzip.py:391(readline)
+ 3 0.000 0.000 0.001 0.000 gzip.py:60(__init__)
+ 3 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.002 0.002 0.605 0.605 openimage.py:68(openimage)
+ 1 0.000 0.000 0.002 0.002 openimage.py:94(_openimage)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
+ 1 0.000 0.000 0.000 0.000 {apply}
+ 74 0.295 0.004 0.295 0.004 {built-in method decompress}
+ 2 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 237 0.000 0.000 0.000 0.000 {len}
+ 3 0.000 0.000 0.000 0.000 {max}
+ 51 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.056 0.056 0.056 0.056 {method 'byteswap' of 'numpy.ndarray' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 38 0.005 0.000 0.005 0.000 {method 'find' of 'str' objects}
+ 20 0.007 0.000 0.007 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 136 0.030 0.000 0.030 0.000 {method 'read' of 'file' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 9 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 8 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 90 0.000 0.000 0.000 0.000 {min}
+ 1 0.034 0.034 0.034 0.034 {numpy.core.multiarray.fromstring}
+ 3 0.001 0.000 0.001 0.000 {open}
+ 6 0.000 0.000 0.000 0.000 {ord}
+ 77 0.034 0.000 0.034 0.000 {zlib.crc32}
+ 3 0.001 0.000 0.001 0.000 {zlib.decompressobj}
+
+
+0.7949 0.0430 0.1928 18.000 testimages\mb_LP_1_002.img
+Mon Mar 16 12:21:04 2009 stats
+
+ 183 function calls in 0.208 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.002 0.002 0.208 0.208 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1158(getEffectiveLevel)
+ 1 0.000 0.000 0.000 0.000 __init__.py:1313(info)
+ 1 0.000 0.000 0.000 0.000 __init__.py:973(info)
+ 1 0.003 0.003 0.203 0.203 adscimage.py:25(read)
+ 1 0.000 0.000 0.084 0.084 adscimage.py:71(_readheader)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
+ 2 0.000 0.000 0.001 0.000 fabioimage.py:284(_open)
+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.002 0.002 0.206 0.206 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.000 0.000 {apply}
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+ 4 0.000 0.000 0.000 0.000 {hasattr}
+ 1 0.000 0.000 0.000 0.000 {isinstance}
+ 20 0.000 0.000 0.000 0.000 {len}
+ 4 0.000 0.000 0.000 0.000 {max}
+ 17 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.052 0.052 0.052 0.052 {method 'byteswap' of 'numpy.ndarray' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'close' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 4 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 2 0.037 0.018 0.037 0.018 {method 'read' of 'file' objects}
+ 19 0.084 0.004 0.084 0.004 {method 'readline' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 17 0.000 0.000 0.000 0.000 {method 'split' of 'str' objects}
+ 51 0.000 0.000 0.000 0.000 {method 'strip' of 'str' objects}
+ 1 0.027 0.027 0.027 0.027 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+
+
+0.2505 0.0227 0.2163 8.067 testimages\oPPA_5grains_0001.tif
+Mon Mar 16 12:21:06 2009 stats
+
+ 11319 function calls in 0.221 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.004 0.004 0.223 0.223 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
+ 1 0.000 0.000 0.000 0.000 BmpImagePlugin.py:55(_accept)
+ 1 0.000 0.000 0.000 0.000 BufrStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:35(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:34(_accept)
+ 1 0.000 0.000 0.000 0.000 FpxImagePlugin.py:46(_accept)
+ 2 0.000 0.000 0.000 0.000 GbrImagePlugin.py:18(i32)
+ 1 0.000 0.000 0.000 0.000 GbrImagePlugin.py:21(_accept)
+ 1 0.000 0.000 0.000 0.000 GifImagePlugin.py:47(_accept)
+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
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+ 1 0.000 0.000 0.000 0.000 ImImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.019 0.019 Image.py:1879(open)
+ 1 0.000 0.000 0.000 0.000 Image.py:280(preinit)
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+ 1 0.000 0.000 0.110 0.110 Image.py:638(convert)
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+ 1 0.008 0.008 0.088 0.088 ImageFile.py:115(load)
+ 1 0.000 0.000 0.010 0.010 ImageFile.py:219(load_prepare)
+ 1 0.000 0.000 0.000 0.000 ImageFile.py:228(load_end)
+ 511 0.001 0.000 0.001 0.000 ImageFile.py:49(_tilesort)
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+ 4 0.000 0.000 0.018 0.005 ImageFile.py:63(__init__)
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+ 536 0.005 0.000 0.007 0.000 TiffImagePlugin.py:66(il32)
+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
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+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
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+ 1 0.000 0.000 0.219 0.219 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.030 0.030 string.py:306(join)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(__init__)
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+ 1 0.005 0.005 0.218 0.218 tifimage.py:58(read)
+ 1 0.010 0.010 0.010 0.010 {_imaging.new}
+ 513 0.001 0.000 0.001 0.000 {apply}
+ 1 0.022 0.022 0.022 0.022 {built-in method convert}
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+
+
+0.0164 0.0005 0.7279 0.8430 0.5297 8.067 testimages\oPPA_5grains_0001.tif.bz2
+Mon Mar 16 12:21:08 2009 stats
+
+ 11321 function calls in 0.759 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 1 0.000 0.000 0.001 0.001 {method 'sort' of 'list' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 1024 0.001 0.000 0.001 0.000 {min}
+ 2 0.028 0.014 0.028 0.014 {numpy.core.multiarray.fromstring}
+ 2244 0.001 0.000 0.001 0.000 {ord}
+ 12 0.000 0.000 0.000 0.000 {range}
+
+
+0.0125 0.0006 0.2968 0.2810 0.0891 8.067 testimages\oPPA_5grains_0001.tif.gz
+Mon Mar 16 12:21:10 2009 stats
+
+ 11469 function calls in 0.283 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.006 0.006 0.284 0.284 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
+ 1 0.000 0.000 0.000 0.000 BmpImagePlugin.py:55(_accept)
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+ 1 0.000 0.000 0.000 0.000 GribStubImagePlugin.py:28(_accept)
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+ 1 0.000 0.000 0.000 0.000 IcnsImagePlugin.py:204(<lambda>)
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+ 1 0.000 0.000 0.000 0.000 ImImagePlugin.py:110(_open)
+ 1 0.000 0.000 0.010 0.010 Image.py:1879(open)
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+ 1 0.000 0.000 0.096 0.096 Image.py:638(convert)
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+ 513 0.001 0.000 0.002 0.000 Image.py:91(isTupleType)
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+ 1 0.001 0.001 0.278 0.278 openimage.py:68(openimage)
+ 1 0.000 0.000 0.004 0.004 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.024 0.024 string.py:306(join)
+ 2 0.000 0.000 0.000 0.000 struct.py:77(unpack)
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+ 1 0.008 0.008 0.273 0.273 tifimage.py:58(read)
+ 1 0.007 0.007 0.007 0.007 {_imaging.new}
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+ 1 0.000 0.000 0.000 0.000 {built-in method setimage}
+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
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+ 524 0.001 0.000 0.001 0.000 {isinstance}
+ 566 0.000 0.000 0.000 0.000 {len}
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+ 1290 0.001 0.000 0.001 0.000 {method 'append' of 'list' objects}
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+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.024 0.012 0.024 0.012 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 540 0.010 0.000 0.010 0.000 {method 'read' of 'cStringIO.StringI' objects}
+ 61 0.000 0.000 0.000 0.000 {method 'read' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'readline' of 'cStringIO.StringI' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 528 0.001 0.000 0.001 0.000 {method 'seek' of 'cStringIO.StringI' objects}
+ 7 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.001 0.001 {method 'sort' of 'list' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 6 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'unpack' of 'Struct' objects}
+ 1031 0.001 0.000 0.001 0.000 {min}
+ 2 0.028 0.014 0.028 0.014 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
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+ 9 0.012 0.001 0.012 0.001 {zlib.crc32}
+ 2 0.000 0.000 0.000 0.000 {zlib.decompressobj}
+
+
+0.0576 0.0076 0.0391 2.004 testimages\somedata_0001.mccd
+Mon Mar 16 12:21:10 2009 stats
+
+ 728 function calls in 0.045 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.045 0.045 <string>:1(<module>)
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+ 1 0.000 0.000 0.000 0.000 fabioimage.py:212(resetvals)
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+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
+ 1 0.000 0.000 0.000 0.000 fromnumeric.py:101(reshape)
+ 4 0.000 0.000 0.000 0.000 ntpath.py:183(splitext)
+ 1 0.000 0.000 0.000 0.000 openimage.py:54(do_magic)
+ 1 0.000 0.000 0.044 0.044 openimage.py:68(openimage)
+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
+ 1 0.000 0.000 0.006 0.006 string.py:306(join)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:34(__init__)
+ 1 0.000 0.000 0.000 0.000 tifimage.py:39(_readheader)
+ 1 0.002 0.002 0.043 0.043 tifimage.py:58(read)
+ 1 0.002 0.002 0.002 0.002 {_imaging.new}
+ 2 0.000 0.000 0.000 0.000 {apply}
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+ 64 0.010 0.000 0.010 0.000 {built-in method encode}
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+ 4 0.000 0.000 0.000 0.000 {getattr}
+ 5 0.000 0.000 0.000 0.000 {hasattr}
+ 13 0.000 0.000 0.000 0.000 {isinstance}
+ 34 0.000 0.000 0.000 0.000 {len}
+ 5 0.000 0.000 0.000 0.000 {max}
+ 75 0.000 0.000 0.000 0.000 {method 'append' of 'list' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'copy' of 'dict' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'disable' of '_lsprof.Profiler' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'find' of 'str' objects}
+ 5 0.000 0.000 0.000 0.000 {method 'has_key' of 'dict' objects}
+ 2 0.006 0.003 0.006 0.003 {method 'join' of 'str' objects}
+ 2 0.000 0.000 0.000 0.000 {method 'keys' of 'dict' objects}
+ 56 0.004 0.000 0.004 0.000 {method 'read' of 'file' objects}
+ 12 0.000 0.000 0.000 0.000 {method 'rfind' of 'str' objects}
+ 11 0.000 0.000 0.000 0.000 {method 'seek' of 'file' objects}
+ 1 0.000 0.000 0.000 0.000 {method 'sort' of 'list' objects}
+ 3 0.000 0.000 0.000 0.000 {method 'tell' of 'file' objects}
+ 2 0.000 0.000 0.000 0.000 {min}
+ 2 0.006 0.003 0.006 0.003 {numpy.core.multiarray.fromstring}
+ 2 0.001 0.000 0.001 0.000 {open}
+ 188 0.000 0.000 0.000 0.000 {ord}
+ 11 0.000 0.000 0.000 0.000 {range}
+
+
+0.0265 0.0011 0.2741 0.3130 0.1863 2.004 testimages\somedata_0001.mccd.bz2
+Mon Mar 16 12:21:10 2009 stats
+
+ 730 function calls in 0.280 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
+ 1 0.001 0.001 0.280 0.280 <string>:1(<module>)
+ 1 0.000 0.000 0.000 0.000 ArgImagePlugin.py:401(_accept)
+ 1 0.000 0.000 0.000 0.000 BmpImagePlugin.py:55(_accept)
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+ 1 0.000 0.000 0.000 0.000 CurImagePlugin.py:37(_accept)
+ 1 0.000 0.000 0.000 0.000 DcxImagePlugin.py:32(i32)
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+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:118(_accept)
+ 1 0.000 0.000 0.000 0.000 EpsImagePlugin.py:29(i32)
+ 1 0.000 0.000 0.000 0.000 FitsStubImagePlugin.py:28(_accept)
+ 1 0.000 0.000 0.000 0.000 FliImagePlugin.py:25(i16)
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+ 2 0.000 0.000 0.000 0.000 fabioimage.py:39(__init__)
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+ 1 0.000 0.000 0.279 0.279 openimage.py:68(openimage)
+ 1 0.001 0.001 0.059 0.059 openimage.py:94(_openimage)
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+ 1 0.002 0.002 0.002 0.002 {_imaging.new}
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+
+0.0307 0.0016 0.0655 0.1090 0.0349 2.004 testimages\somedata_0001.mccd.gz
+Mon Mar 16 12:21:12 2009 stats
+
+ 904 function calls in 0.067 CPU seconds
+
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+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 13 0.000 0.000 0.000 0.000 {min}
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+
+0.0031 0.0008 0.0030 0.023 testimages\testmap1_0002.tif
+Mon Mar 16 12:21:12 2009 stats
+
+ 595 function calls in 0.003 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
+
+0.0018 0.0003 0.0024 0.0470 0.0008 0.023 testimages\testmap1_0002.tif.bz2
+Mon Mar 16 12:21:12 2009 stats
+
+ 597 function calls in 0.003 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+ 1 0.000 0.000 0.001 0.001 openimage.py:94(_openimage)
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+ 1 0.000 0.000 0.000 0.000 {_imaging.new}
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+ 1 0.000 0.000 0.000 0.000 {cStringIO.StringIO}
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+ 16 0.000 0.000 0.000 0.000 {method 'seek' of 'cStringIO.StringI' objects}
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+ 5 0.000 0.000 0.000 0.000 {method 'tell' of 'cStringIO.StringI' objects}
+ 4 0.000 0.000 0.000 0.000 {min}
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+ 204 0.000 0.000 0.000 0.000 {ord}
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+
+
+0.0004 0.0003 0.0023 0.0470 0.0012 0.023 testimages\testmap1_0002.tif.gz
+Mon Mar 16 12:21:12 2009 stats
+
+ 713 function calls in 0.004 CPU seconds
+
+ Ordered by: standard name
+
+ ncalls tottime percall cumtime percall filename:lineno(function)
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+
+
--
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