[yade] branch master updated (790a7ba -> fdb146b)
Anton Gladky
gladk at alioth.debian.org
Mon Sep 30 19:08:35 UTC 2013
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch master
in repository yade.
from 790a7ba Update changelog.
new bbab763 Update debian/watch. Take version number from github.
new 1c35234 Remove binutils-gold. (Closes: #722544)
new eb29103 Add BD for new PFV-feature.
new 27ffe4a Update break/replaces for older yade versions.
new 6b2b68f Remove mencoder from recommends.
new fe54741 Add system-component of boost to be linked.
new 39b346a Override lintian error (seems, false-positive).
new 9edd741 Use canonical VCS-field.
adds b3f639e Imported Upstream version 1.00.0
new 630bfc8 Merge tag 'upstream/1.00.0'
new fdb146b Update changelog.
The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 1 +
.kdev4/yade.kdev4 | 35 -
CMakeLists.txt | 77 +-
ChangeLog | 4825 ++++++++++++++++++++
RELEASE | 2 +-
Yade.kdevelop | 229 -
cMake/FindCholmod.cmake | 41 +-
cMake/FindLoki.cmake | 2 +-
cMake/FindMetis.cmake | 16 +
cMake/FindOpenBlas.cmake | 14 +
core/Cell.hpp | 12 +-
core/Clump.cpp | 159 +-
core/Clump.hpp | 2 +-
core/Engine.hpp | 2 +-
core/ForceContainer.hpp | 88 +-
core/Functor.hpp | 2 +-
core/Scene.cpp | 6 +-
core/main/main.py.in | 13 +-
core/main/yade-batch.in | 20 +-
debian/changelog | 14 +
debian/control | 17 +-
.../patches/10_add_system_boot_to_be_linked.patch | 15 +
debian/patches/series | 1 +
debian/watch | 4 +-
debian/yade.lintian-overrides | 2 +
doc/references.bib | 104 +-
doc/sphinx/conf.py | 2 +-
doc/sphinx/fig/micro-domains.png | Bin 0 -> 37528 bytes
doc/sphinx/formulation.rst | 78 +-
doc/sphinx/installation.rst | 23 +-
doc/sphinx/introduction.rst | 6 +-
doc/sphinx/prog.rst | 8 +-
doc/sphinx/references.bib | 40 +-
doc/sphinx/templates/index.html | 12 +-
doc/sphinx/user.rst | 262 +-
doc/sphinx/yadeSphinx.py | 6 +-
doc/yade-articles.bib | 841 ++--
doc/yade-conferences.bib | 98 +-
doc/yade-theses.bib | 20 +-
examples/CapillaryPhys-example.py | 4 +-
examples/FluidCouplingPFV/oedometer.py | 165 +
examples/LudingPM.py | 67 +
examples/PIDController.py | 57 +
examples/clumps/adaptClumpMasses-example.py | 54 -
examples/clumps/addToClump-example.py | 6 +-
examples/clumps/apply-buoyancy-clumps.py | 145 +
examples/clumps/releaseFromClump-example.py | 4 +-
examples/concrete/triax.py | 209 +
examples/concrete/uniax.py | 14 +-
examples/gts-horse/gts-random-pack-obb.py | 8 +-
examples/gts-horse/gts-random-pack.py | 10 +-
examples/jointedCohesiveFrictionalPM/README | 13 +
.../jointedCohesiveFrictionalPM/gravityLoading.py | 152 +
.../gravityLoading_velocityField_arrows.png | Bin 0 -> 277752 bytes
.../gravityLoading_velocityField_spheres.png | Bin 0 -> 147381 bytes
.../identificationSpheresOnJoint.py | 209 +
.../jointedCohesiveFrictionalPM/jointedModel.png | Bin 0 -> 221911 bytes
.../packInGtsSurface.py | 46 +
.../parallellepiped.gts | 39 +
.../persistentPlane30Deg.stl | Bin 0 -> 884 bytes
examples/periodicSandPile.py | 2 +-
examples/polyhedra/oneTetra.py | 43 +
examples/polyhedra/twoTetras.py | 111 +
examples/rotationalResistance.py | 46 +
examples/simple-shear/simpleShear.py | 13 +-
examples/{test => }/spheresFactory.py | 5 +-
examples/tesselationwrapper/tesselationWrapper.py | 2 +
examples/test/CundallStrackTest.py | 21 -
examples/test/Dem3DofGeom.py | 40 -
examples/test/vtk-exporter/vtkExporter.py | 13 +-
examples/timeStepperUsage.py | 2 +-
examples/triax-tutorial/script-session1.py | 2 +-
examples/tunnel-pack.py | 14 +-
gui/CMakeLists.txt | 5 +-
gui/qt4/OpenGLManager.cpp | 2 +-
lib/base/Math.hpp | 31 +-
lib/import/STLReader.hpp | 17 +-
lib/opengl/GLUtils.cpp | 3 +-
lib/opengl/OpenGLWrapper.hpp | 57 +-
lib/triangulation/FlowBoundingSphere.cpp | 2 +-
lib/triangulation/FlowBoundingSphere.hpp | 345 +-
lib/triangulation/FlowBoundingSphere.ipp | 190 +-
lib/triangulation/FlowBoundingSphereLinSolv.hpp | 192 +
lib/triangulation/FlowBoundingSphereLinSolv.ipp | 995 ++++
lib/triangulation/Network.hpp | 42 +-
lib/triangulation/Network.ipp | 73 +-
lib/triangulation/PeriodicFlow.hpp | 5 +-
lib/triangulation/PeriodicFlowLinSolv.hpp | 36 +
lib/triangulation/PeriodicFlowLinSolv.ipp | 325 ++
lib/triangulation/RegularTriangulation.h | 1 -
lib/triangulation/Tenseur3.h | 229 +-
lib/triangulation/TriaxialState.h | 5 +-
lib/triangulation/def_types.h | 448 +-
pkg/common/Cylinder.cpp | 8 +-
pkg/common/Cylinder.hpp | 6 +-
pkg/common/Facet.cpp | 4 +-
pkg/common/Facet.hpp | 3 +-
pkg/common/Gl1_NormPhys.cpp | 137 +-
pkg/common/Gl1_Sphere.cpp | 2 +-
pkg/common/Grid.cpp | 150 +
pkg/common/Grid.hpp | 45 +-
pkg/common/InsertionSortCollider.cpp | 1 -
pkg/common/KinematicEngines.cpp | 42 +-
pkg/common/KinematicEngines.hpp | 22 +
pkg/common/OpenGLRenderer.cpp | 2 +-
pkg/common/OpenGLRenderer.hpp | 1 +
pkg/dem/BubbleMat.cpp | 78 +
pkg/dem/BubbleMat.hpp | 75 +
pkg/dem/CapillaryPhys.hpp | 15 +-
pkg/dem/CapillaryStressRecorder.cpp | 14 +-
pkg/dem/CapillaryTriaxialTest.cpp | 2 +-
pkg/dem/CapillaryTriaxialTest.hpp | 2 +-
pkg/dem/CohesiveFrictionalContactLaw.hpp | 2 -
pkg/dem/CohesiveFrictionalPM.cpp | 200 -
pkg/dem/CohesiveFrictionalPM.hpp | 114 -
pkg/dem/CohesiveStateRPMRecorder.cpp | 19 -
pkg/dem/CohesiveStateRPMRecorder.hpp | 19 -
pkg/dem/ConcretePM.cpp | 48 +-
pkg/dem/ConcretePM.hpp | 5 +-
pkg/dem/Dem3DofGeom_FacetSphere.cpp | 221 -
pkg/dem/Dem3DofGeom_FacetSphere.hpp | 80 -
pkg/dem/Dem3DofGeom_SphereSphere.cpp | 196 -
pkg/dem/Dem3DofGeom_SphereSphere.hpp | 80 -
pkg/dem/Dem3DofGeom_WallSphere.cpp | 117 -
pkg/dem/Dem3DofGeom_WallSphere.hpp | 70 -
pkg/dem/DemXDofGeom.cpp | 4 +-
pkg/dem/DemXDofGeom.hpp | 46 +-
pkg/dem/DomainLimiter.cpp | 16 +-
pkg/dem/FlowEngine.cpp | 227 +-
pkg/dem/FlowEngine.hpp | 161 +-
pkg/dem/GlobalStiffnessTimeStepper.cpp | 83 +-
pkg/dem/GlobalStiffnessTimeStepper.hpp | 7 +-
pkg/dem/HertzMindlin.cpp | 56 +-
pkg/dem/HertzMindlin.hpp | 7 +-
pkg/dem/InelastCohFrictMat.hpp | 59 +-
pkg/dem/InelastCohFrictPhys.cpp | 15 +-
pkg/dem/InelastCohFrictPhys.hpp | 96 +-
...p2_2xInelastCohFrictMat_InelastCohFrictPhys.cpp | 122 +-
...p2_2xInelastCohFrictMat_InelastCohFrictPhys.hpp | 10 +-
pkg/dem/Ip2_ElastMat.cpp | 64 +
pkg/dem/Ip2_ElastMat.hpp | 24 +
.../Ip2_FrictMat_FrictMat_MindlinCapillaryPhys.hpp | 14 +-
pkg/dem/JointedCohesiveFrictionalPM.cpp | 235 +
pkg/dem/JointedCohesiveFrictionalPM.hpp | 110 +
pkg/dem/KinemCTDEngine.hpp | 3 +-
pkg/dem/KinemSimpleShearBox.cpp | 2 +-
pkg/dem/L3Geom.cpp | 16 +-
pkg/dem/L3Geom.hpp | 2 +-
...ScGeom6D_InelastCohFrictPhys_CohesionMoment.cpp | 371 +-
...ScGeom6D_InelastCohFrictPhys_CohesionMoment.hpp | 23 +-
pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp | 31 +-
pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.hpp | 10 +-
pkg/dem/LudingPM.cpp | 177 +
pkg/dem/LudingPM.hpp | 65 +
pkg/dem/NewtonIntegrator.cpp | 2 +-
pkg/dem/NewtonIntegrator.hpp | 4 +-
pkg/dem/ParticleSizeDistrbutionRPMRecorder.cpp | 293 --
pkg/dem/ParticleSizeDistrbutionRPMRecorder.hpp | 51 -
pkg/dem/PeriIsoCompressor.cpp | 9 +-
pkg/dem/PeriIsoCompressor.hpp | 23 +-
pkg/dem/RockPM.cpp | 202 -
pkg/dem/RockPM.hpp | 96 -
pkg/dem/SampleCapillaryPressureEngine.cpp | 4 +-
pkg/dem/Shop.cpp | 102 +-
pkg/dem/Shop.hpp | 7 +-
pkg/dem/SpherePack.cpp | 29 +-
pkg/dem/SpherePack.hpp | 2 +-
pkg/dem/TesselationWrapper.hpp | 2 +-
pkg/dem/Tetra.cpp | 654 ++-
pkg/dem/Tetra.hpp | 120 +-
pkg/dem/TriaxialStateRecorder.hpp | 1 -
pkg/dem/TriaxialStressController.cpp | 8 +
pkg/dem/TriaxialStressController.hpp | 4 +-
pkg/dem/TriaxialTest.hpp | 2 +-
pkg/dem/VTKRecorder.cpp | 25 +-
pkg/dem/VTKRecorder.hpp | 2 +-
pkg/dem/ViscoelasticCapillarPM.cpp | 138 +
pkg/dem/ViscoelasticPM.cpp | 121 +-
pkg/dem/ViscoelasticPM.hpp | 26 +-
pkg/dem/WirePM.cpp | 183 +-
pkg/dem/WirePM.hpp | 40 +-
py/CMakeLists.txt | 19 +-
py/_eudoxos.cpp | 335 --
py/_extraDocs.py | 3 +-
py/_utils.cpp | 119 +-
py/eudoxos.py | 311 --
py/export.py | 168 +-
py/mathWrap/miniEigen.cpp | 4 +
py/pack/_packSpheres.cpp | 2 +-
py/pack/pack.py | 11 +-
py/system.py | 2 -
py/tests/__init__.py | 4 +-
py/tests/clump.py | 4 +-
py/utils.py | 113 +-
py/wrapper/yadeWrapper.cpp | 207 +-
py/ymport.py | 9 +-
scripts/checks-and-tests/checks/DEM-PFV-check.py | 146 +
scripts/checks-and-tests/checks/README | 2 +
scripts/checks-and-tests/checks/checkGravity.py | 2 -
scripts/checks-and-tests/checks/checkList.py | 16 +-
scripts/checks-and-tests/checks/checkTestDummy.py | 7 +
scripts/checks-and-tests/checks/checkTestTriax.py | 3 +
.../checks-and-tests/checks/checkWirePM.py | 70 +-
scripts/checks-and-tests/checks/data/100spheres | 100 +
yade.kdev4 | 3 -
205 files changed, 13588 insertions(+), 5676 deletions(-)
delete mode 100644 .kdev4/yade.kdev4
delete mode 100644 Yade.kdevelop
create mode 100644 cMake/FindMetis.cmake
create mode 100644 cMake/FindOpenBlas.cmake
create mode 100644 debian/patches/10_add_system_boot_to_be_linked.patch
create mode 100644 debian/patches/series
create mode 100644 debian/yade.lintian-overrides
create mode 100644 doc/sphinx/fig/micro-domains.png
create mode 100644 examples/FluidCouplingPFV/oedometer.py
create mode 100644 examples/LudingPM.py
create mode 100644 examples/PIDController.py
delete mode 100644 examples/clumps/adaptClumpMasses-example.py
create mode 100644 examples/clumps/apply-buoyancy-clumps.py
create mode 100644 examples/concrete/triax.py
create mode 100644 examples/jointedCohesiveFrictionalPM/README
create mode 100644 examples/jointedCohesiveFrictionalPM/gravityLoading.py
create mode 100644 examples/jointedCohesiveFrictionalPM/gravityLoading_velocityField_arrows.png
create mode 100644 examples/jointedCohesiveFrictionalPM/gravityLoading_velocityField_spheres.png
create mode 100644 examples/jointedCohesiveFrictionalPM/identificationSpheresOnJoint.py
create mode 100644 examples/jointedCohesiveFrictionalPM/jointedModel.png
create mode 100644 examples/jointedCohesiveFrictionalPM/packInGtsSurface.py
create mode 100644 examples/jointedCohesiveFrictionalPM/parallellepiped.gts
create mode 100644 examples/jointedCohesiveFrictionalPM/persistentPlane30Deg.stl
create mode 100644 examples/polyhedra/oneTetra.py
create mode 100644 examples/polyhedra/twoTetras.py
create mode 100644 examples/rotationalResistance.py
rename examples/{test => }/spheresFactory.py (95%)
delete mode 100644 examples/test/CundallStrackTest.py
delete mode 100644 examples/test/Dem3DofGeom.py
create mode 100644 lib/triangulation/FlowBoundingSphereLinSolv.hpp
create mode 100644 lib/triangulation/FlowBoundingSphereLinSolv.ipp
create mode 100644 lib/triangulation/PeriodicFlowLinSolv.hpp
create mode 100644 lib/triangulation/PeriodicFlowLinSolv.ipp
create mode 100644 pkg/dem/BubbleMat.cpp
create mode 100644 pkg/dem/BubbleMat.hpp
delete mode 100644 pkg/dem/CohesiveFrictionalPM.cpp
delete mode 100644 pkg/dem/CohesiveFrictionalPM.hpp
delete mode 100644 pkg/dem/CohesiveStateRPMRecorder.cpp
delete mode 100644 pkg/dem/CohesiveStateRPMRecorder.hpp
delete mode 100644 pkg/dem/Dem3DofGeom_FacetSphere.cpp
delete mode 100644 pkg/dem/Dem3DofGeom_FacetSphere.hpp
delete mode 100644 pkg/dem/Dem3DofGeom_SphereSphere.cpp
delete mode 100644 pkg/dem/Dem3DofGeom_SphereSphere.hpp
delete mode 100644 pkg/dem/Dem3DofGeom_WallSphere.cpp
delete mode 100644 pkg/dem/Dem3DofGeom_WallSphere.hpp
create mode 100644 pkg/dem/Ip2_ElastMat.cpp
create mode 100644 pkg/dem/Ip2_ElastMat.hpp
create mode 100644 pkg/dem/JointedCohesiveFrictionalPM.cpp
create mode 100644 pkg/dem/JointedCohesiveFrictionalPM.hpp
create mode 100644 pkg/dem/LudingPM.cpp
create mode 100644 pkg/dem/LudingPM.hpp
delete mode 100644 pkg/dem/ParticleSizeDistrbutionRPMRecorder.cpp
delete mode 100644 pkg/dem/ParticleSizeDistrbutionRPMRecorder.hpp
delete mode 100644 pkg/dem/RockPM.cpp
delete mode 100644 pkg/dem/RockPM.hpp
create mode 100644 pkg/dem/ViscoelasticCapillarPM.cpp
delete mode 100644 py/_eudoxos.cpp
delete mode 100644 py/eudoxos.py
create mode 100644 scripts/checks-and-tests/checks/DEM-PFV-check.py
copy examples/WireMatPM/wiretensiltest.py => scripts/checks-and-tests/checks/checkWirePM.py (80%)
create mode 100644 scripts/checks-and-tests/checks/data/100spheres
delete mode 100644 yade.kdev4
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