[yade] branch wheezy updated (b4ab260 -> a809224)
Anton Gladky
gladk at moszumanska.debian.org
Fri Jul 11 21:28:26 UTC 2014
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch wheezy
in repository yade.
from b4ab260 Update changelog.
adds 431abb8 Imported Upstream version 1.10.0
adds bc56659 Merge.
adds 3552a3e Set minimal vtk6 version 6.1.0+dfsg-8.
adds cd915f6 Set minimal eigen3 version 3.2.1-2.
adds 8e02049 Add autopkgtest-field to control.
adds 38389f8 Remove patches aplied by upstream.
adds 67a7bc3 Update changelog.
new 6205258 Merge.
new b8dece7 Update changelog.
new 5d40b83 Remove openblas and suitesparse from BD.
new a809224 Update changelog.
The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 1 -
CMakeLists.txt | 112 +-
ChangeLog | 338 +++++
INSTALL | 8 +
RELEASE | 2 +-
cMake/FindMetis.cmake | 2 +-
cMake/FindOpenBlas.cmake | 6 +-
core/Body.cpp | 24 +-
core/Body.hpp | 37 +-
core/BodyContainer.cpp | 26 +-
core/BodyContainer.hpp | 3 +-
core/Bound.hpp | 2 +-
core/Cell.hpp | 2 +-
core/Clump.cpp | 41 +-
core/Clump.hpp | 4 +-
core/Dispatcher.hpp | 32 +-
core/EnergyTracker.hpp | 2 +-
core/FileGenerator.hpp | 2 +-
core/ForceContainer.hpp | 57 +-
core/Functor.hpp | 4 +-
core/InteractionContainer.cpp | 50 +-
core/InteractionContainer.hpp | 73 +-
core/Omega.cpp | 20 +-
core/Omega.hpp | 1 -
core/Scene.cpp | 15 +-
core/Scene.hpp | 17 +-
core/State.cpp | 28 +-
core/State.hpp | 6 +-
core/main/main.py.in | 15 +-
core/main/pyboot.cpp | 10 +-
core/main/yade-batch.in | 7 +-
debian/changelog | 18 +
debian/control | 3 +-
debian/patches/01_fix_ipython_1.0.patch | 16 -
...tics.patch => 01_remove_google_analytics.patch} | 6 +-
debian/patches/03_increase_steps_in_test.patch | 15 -
debian/patches/04_fix_libqglviewer.patch | 37 -
debian/patches/series | 5 +-
doc/references.bib | 69 +
doc/sphinx/citing.rst | 2 +-
doc/sphinx/conf.py | 8 +-
doc/sphinx/installation.rst | 71 +-
...hon_directive013.py => ipython_directive200.py} | 635 ++++++---
doc/sphinx/prog.rst | 4 +-
doc/sphinx/publications.rst.in | 2 +-
doc/sphinx/references.bib | 10 +
doc/sphinx/templates/index.html | 5 +-
doc/sphinx/user.rst | 10 +-
doc/yade-articles.bib | 15 +-
doc/yade-conferences.bib | 28 +-
examples/FluidCouplingLBM/Buoyancy_Gradient.m | 138 ++
examples/FluidCouplingLBM/buoyancy.py | 195 +++
examples/FluidCouplingLBM/yadeLBMvisu.m | 151 +++
examples/FluidCouplingPFV/oedometer.py | 2 +-
examples/PIDController.py | 5 +-
examples/ResetRandomPosition.py | 6 +-
examples/ViscElMatchMaker.py | 64 +
.../simple-scene-plot-NewtonIntegrator.py} | 4 +-
.../simple-scene-plot-RungeKuttaCashKarp54.py} | 38 +-
examples/baraban/BicyclePedalEngine.py | 5 +-
examples/baraban/baraban.py | 5 +-
examples/billiard.py | 58 +
examples/bulldozer/bulldozerVTK.py | 5 +-
examples/capillary/capillar.py | 97 ++
examples/capillary/liquidmigration/showcase.py | 130 ++
examples/clumps/clump-hopper-viscoelastic.py | 5 +-
examples/clumps/clump-inbox-viscoelastic.py | 5 +-
examples/clumps/clump-viscoelastic.py | 5 +-
examples/concrete/uniax.py | 4 +-
examples/conveyor/conveyor.geo | 24 +
examples/conveyor/conveyor.mesh | 1360 +++++++++++++++++++
examples/conveyor/conveyor.py | 55 +
examples/gts-horse/gts-random-pack-obb.py | 2 +-
examples/jointedCohesiveFrictionalPM/gravityBis.py | 14 +-
examples/jointedCohesiveFrictionalPM/identifBis.py | 54 +-
examples/packs/packs.py | 2 +-
examples/ring2d/ringSimpleViscoelastic.py | 5 +-
examples/rotationalResistance.py | 6 +-
examples/sph/README | 5 +
examples/sph/box.geo | 27 +
examples/sph/box.mesh | 1273 ++++++++++++++++++
examples/sph/cpt/a | 0
examples/sph/sph_box.py | 52 +
examples/sph/testKernelFunc.py | 91 ++
examples/sph/toystar.py | 51 +
examples/sph/watercolumn.py | 63 +
examples/tesselationwrapper/tesselationWrapper.py | 2 +-
examples/test/batch/sim.py | 2 +-
examples/test/facet-sphere-ViscElBasic-peri.py | 7 +-
examples/test/facet-sphere-ViscElBasic.py | 5 +-
.../paraview-spheres-solid-section/export_text.py | 12 +
.../paraview-spheres-solid-section/pv_section.py | 660 ++++++++++
examples/test/performance/checkPerf.py | 82 +-
examples/test/periodic-geom-compare.py | 1 -
examples/test/periodic-simple-shear.py | 41 +-
examples/test/periodic-triax-settingHsize.py | 3 +-
examples/test/periodic-triax.py | 1 -
examples/test/sphere-sphere-ViscElBasic-peri.py | 3 +-
examples/test/unv-read/unvRead.py | 1 -
examples/test/vtk-exporter/vtkExporter.py | 34 +-
examples/timeStepperUsage.py | 2 +-
gui/qt4/GLViewer.cpp | 114 +-
gui/qt4/GLViewer.hpp | 4 +-
gui/qt4/GLViewerDisplay.cpp | 24 +-
gui/qt4/GLViewerMouse.cpp | 14 +-
gui/qt4/SerializableEditor.py | 2 +-
gui/qt4/XYZ.xpm | 45 +
gui/qt4/YZX.xpm | 45 +
gui/qt4/ZXY.xpm | 45 +
gui/qt4/_GLViewer.cpp | 6 +-
gui/qt4/controller.ui | 8 +-
gui/qt4/img.qrc | 8 +-
gui/qt4/yade-favicon.xpm | 229 ++++
lib/base/Logging.hpp | 15 +-
lib/base/Math.cpp | 15 +
lib/base/Math.hpp | 46 +-
lib/base/openmp-accu.hpp | 75 +-
lib/factory/DynLibManager.cpp | 1 -
lib/multimethods/DynLibDispatcher.hpp | 6 +-
lib/serialization/ObjectIO.hpp | 12 +-
lib/serialization/Serializable.cpp | 35 +-
lib/serialization/Serializable.hpp | 33 +-
lib/smoothing/WeightedAverage2d.hpp | 50 +-
lib/triangulation/FlowBoundingSphere.cpp | 28 -
lib/triangulation/FlowBoundingSphere.hpp | 123 +-
lib/triangulation/FlowBoundingSphere.ipp | 1195 +++++++----------
lib/triangulation/FlowBoundingSphereLinSolv.hpp | 62 +-
lib/triangulation/FlowBoundingSphereLinSolv.ipp | 244 ++--
.../KinematicLocalisationAnalyser.cpp | 50 +-
.../KinematicLocalisationAnalyser.hpp | 22 +-
lib/triangulation/Network.hpp | 72 +-
lib/triangulation/Network.ipp | 284 ++--
lib/triangulation/PeriodicFlow.cpp | 650 ----------
lib/triangulation/PeriodicFlow.hpp | 458 ++++++-
lib/triangulation/PeriodicFlowLinSolv.hpp | 27 +-
lib/triangulation/PeriodicFlowLinSolv.ipp | 149 +--
lib/triangulation/RegularTriangulation.h | 108 +-
lib/triangulation/Tenseur3.cpp | 14 +-
lib/triangulation/Tenseur3.h | 10 +-
lib/triangulation/Tesselation.h | 152 ++-
lib/triangulation/Tesselation.ipp | 377 +-----
lib/triangulation/TriaxialState.cpp | 6 +-
lib/triangulation/TriaxialState.h | 14 +-
lib/triangulation/def_types.h | 225 ----
pkg/common/Collider.cpp | 16 +-
pkg/common/Collider.hpp | 4 +-
pkg/common/CylScGeom6D.hpp | 2 +
pkg/common/Cylinder.cpp | 11 +-
pkg/common/Cylinder.hpp | 5 +-
pkg/common/Dispatching.cpp | 24 +-
pkg/common/Dispatching.hpp | 1 +
pkg/common/Facet.cpp | 2 +-
pkg/common/Gl1_NormPhys.cpp | 2 +-
pkg/common/Gl1_NormPhys.hpp | 13 +-
pkg/common/GravityEngines.cpp | 8 +-
pkg/common/Grid.cpp | 21 +-
pkg/common/Grid.hpp | 2 +-
pkg/common/InsertionSortCollider.cpp | 262 ++--
pkg/common/InsertionSortCollider.hpp | 24 +-
pkg/common/InteractionLoop.cpp | 44 +-
pkg/common/InteractionLoop.hpp | 2 +-
pkg/common/KinematicEngines.cpp | 1 +
pkg/common/KinematicEngines.hpp | 1 +
pkg/common/MatchMaker.cpp | 2 +-
pkg/common/OpenGLRenderer.cpp | 12 +-
pkg/common/OpenGLRenderer.hpp | 5 +
pkg/common/ParallelEngine.cpp | 22 +-
pkg/common/ParallelEngine.hpp | 4 +-
pkg/common/PersistentTriangulationCollider.cpp | 2 +-
pkg/common/Recorder.cpp | 2 +-
pkg/common/SPHEngine.cpp | 403 ++++++
pkg/common/SPHEngine.hpp | 46 +
pkg/common/SpatialQuickSortCollider.cpp | 2 +-
pkg/common/Wall.cpp | 1 +
pkg/common/ZECollider.cpp | 2 +-
pkg/dem/CapillaryStressRecorder.cpp | 20 +-
pkg/dem/CapillaryTriaxialTest.cpp | 40 +-
pkg/dem/CohFrictMat.hpp | 11 +-
pkg/dem/CohFrictPhys.hpp | 14 +-
pkg/dem/CohesiveFrictionalContactLaw.cpp | 72 +-
pkg/dem/CohesiveFrictionalContactLaw.hpp | 16 +-
pkg/dem/CohesiveTriaxialTest.cpp | 21 +-
pkg/dem/ConcretePM.cpp | 6 +-
pkg/dem/ConcretePM.hpp | 36 +-
pkg/dem/Disp2DPropLoadEngine.cpp | 12 +-
pkg/dem/DomainLimiter.cpp | 8 +-
pkg/dem/FacetTopologyAnalyzer.cpp | 2 +-
pkg/dem/FlatGridCollider.cpp | 4 +-
pkg/dem/FlowEngine.cpp | 1137 ----------------
pkg/dem/FlowEngine.hpp | 488 -------
pkg/dem/FrictViscoPM.cpp | 228 ++++
pkg/dem/FrictViscoPM.hpp | 121 ++
pkg/dem/GeneralIntegratorInsertionSortCollider.cpp | 228 ++++
pkg/dem/GeneralIntegratorInsertionSortCollider.hpp | 39 +
pkg/dem/GlobalStiffnessTimeStepper.cpp | 2 +-
pkg/dem/Ig2_Sphere_Sphere_ScGeom.cpp | 2 +-
pkg/dem/Integrator.cpp | 351 +++++
pkg/dem/Integrator.hpp | 113 ++
.../Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.cpp | 9 +-
.../Ip2_CohFrictMat_CohFrictMat_CohFrictPhys.hpp | 2 +-
pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.cpp | 18 +-
pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.hpp | 2 +-
pkg/dem/JointedCohesiveFrictionalPM.cpp | 49 +-
pkg/dem/JointedCohesiveFrictionalPM.hpp | 8 +-
pkg/dem/KinemCNDEngine.cpp | 2 +-
pkg/dem/KinemCNLEngine.cpp | 6 +-
pkg/dem/KinemCNSEngine.cpp | 2 +-
pkg/dem/KinemCTDEngine.cpp | 16 +-
pkg/dem/KinemSimpleShearBox.cpp | 25 +-
pkg/dem/L3Geom.hpp | 2 +-
...ScGeom6D_InelastCohFrictPhys_CohesionMoment.hpp | 3 +-
pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.cpp | 4 +-
pkg/dem/Law2_ScGeom_CapillaryPhys_Capillarity.hpp | 4 +-
pkg/dem/MicroMacroAnalyser.cpp | 16 +-
pkg/dem/MicroMacroAnalyser.hpp | 4 +-
pkg/dem/NewtonIntegrator.cpp | 38 +-
pkg/dem/NewtonIntegrator.hpp | 1 +
pkg/dem/NormalInelasticityLaw.cpp | 2 +-
pkg/dem/NormalInelasticityLaw.hpp | 2 +-
pkg/dem/PeriIsoCompressor.cpp | 2 +-
pkg/dem/PeriIsoCompressor.hpp | 5 +-
pkg/dem/Polyhedra.cpp | 85 +-
pkg/dem/Polyhedra.hpp | 66 +-
pkg/dem/Polyhedra_Ig2.cpp | 17 +
pkg/dem/Polyhedra_splitter.cpp | 40 +-
pkg/dem/Polyhedra_support.cpp | 80 +-
pkg/dem/RungeKuttaCashKarp54Integrator.cpp | 34 +
pkg/dem/RungeKuttaCashKarp54Integrator.hpp | 49 +
pkg/dem/SampleCapillaryPressureEngine.cpp | 5 +-
pkg/dem/ScGeom.hpp | 4 +-
pkg/dem/Shop.hpp | 4 +-
pkg/dem/Shop_01.cpp | 32 +-
pkg/dem/Shop_02.cpp | 31 +-
pkg/dem/SimpleShear.cpp | 24 +-
pkg/dem/SpherePack.cpp | 18 +-
pkg/dem/SpherePack.hpp | 35 +-
pkg/dem/SpheresFactory.cpp | 4 +-
pkg/dem/TesselationWrapper.cpp | 38 +-
pkg/dem/TesselationWrapper.hpp | 60 +-
pkg/dem/Tetra.cpp | 8 +-
pkg/dem/TriaxialCompressionEngine.cpp | 8 +-
pkg/dem/TriaxialStateRecorder.cpp | 20 +-
pkg/dem/TriaxialStressController.hpp | 8 +-
pkg/dem/TriaxialTest.cpp | 9 +-
pkg/dem/UniaxialStrainer.cpp | 10 +-
pkg/dem/UniaxialStrainer.hpp | 5 +-
pkg/dem/VTKRecorder.cpp | 132 +-
pkg/dem/VTKRecorder.hpp | 6 +-
pkg/dem/ViscoelasticCapillarPM.cpp | 714 ++++++++--
pkg/dem/ViscoelasticCapillarPM.hpp | 114 ++
pkg/dem/ViscoelasticPM.cpp | 388 +++---
pkg/dem/ViscoelasticPM.hpp | 65 +-
pkg/lbm/HydrodynamicsLawLBM.cpp | 1370 ++++++++++++++++++++
pkg/lbm/HydrodynamicsLawLBM.hpp | 302 +++++
core/Dispatcher.cpp => pkg/lbm/LBMbody.cpp | 18 +-
pkg/lbm/LBMbody.hpp | 46 +
pkg/lbm/LBMlink.cpp | 17 +
pkg/lbm/LBMlink.hpp | 37 +
pkg/lbm/LBMnode.cpp | 120 ++
pkg/lbm/LBMnode.hpp | 67 +
pkg/pfv/DFNFlow.cpp | 107 ++
pkg/pfv/DummyFlowEngine.cpp | 59 +
pkg/pfv/FlowEngine.cpp | 39 +
pkg/pfv/FlowEngine.hpp | 16 +
pkg/pfv/FlowEngine.hpp.in | 416 ++++++
pkg/pfv/FlowEngine.ipp | 1 +
pkg/pfv/FlowEngine.ipp.in | 737 +++++++++++
pkg/pfv/PeriodicFlowEngine.cpp | 531 ++++++++
pkg/pfv/SoluteFlowEngine.cpp | 196 +++
py/WeightedAverage2d.cpp | 2 +-
py/_polyhedra_utils.cpp | 194 ++-
py/_utils.cpp | 63 +-
py/bodiesHandling.py | 2 +-
py/config.py.in | 7 +-
py/export.py | 525 ++++++--
py/geom.py | 75 +-
py/pack/_packObb.cpp | 14 +-
py/pack/_packSpheres.cpp | 27 +-
py/polyhedra_utils.py | 57 +
py/runtime.py | 2 +-
py/tests/cohesive-chain.py | 1 -
py/utils.py | 2 +-
py/wrapper/customConverters.cpp | 151 +--
py/wrapper/yadeWrapper.cpp | 285 ++--
py/ymport.py | 31 +-
scripts/checks-and-tests/checks/DEM-PFV-check.py | 16 +-
scripts/checks-and-tests/checks/checkGravity.py | 5 +-
.../checks/checkLiquidMigration.py | 104 ++
scripts/checks-and-tests/checks/checkViscElEng.py | 4 +-
scripts/checks-and-tests/checks/checkWeight.py | 5 +-
scripts/ppa/.mini-dinstall.conf | 1 +
scripts/ppa/buildppa.py | 11 +-
scripts/update_names.sh | 67 +
293 files changed, 17225 insertions(+), 6629 deletions(-)
delete mode 100644 debian/patches/01_fix_ipython_1.0.patch
rename debian/patches/{02_remove_google_analytics.patch => 01_remove_google_analytics.patch} (77%)
delete mode 100644 debian/patches/03_increase_steps_in_test.patch
delete mode 100644 debian/patches/04_fix_libqglviewer.patch
copy doc/sphinx/{ipython_directive013.py => ipython_directive200.py} (50%)
create mode 100644 examples/FluidCouplingLBM/Buoyancy_Gradient.m
create mode 100644 examples/FluidCouplingLBM/buoyancy.py
create mode 100644 examples/FluidCouplingLBM/yadeLBMvisu.m
create mode 100644 examples/ViscElMatchMaker.py
copy examples/{simple-scene/simple-scene-plot.py => adaptiveintegrator/simple-scene-plot-NewtonIntegrator.py} (96%)
copy examples/{simple-scene/simple-scene-plot.py => adaptiveintegrator/simple-scene-plot-RungeKuttaCashKarp54.py} (61%)
create mode 100644 examples/billiard.py
create mode 100644 examples/capillary/capillar.py
create mode 100644 examples/capillary/liquidmigration/showcase.py
create mode 100644 examples/conveyor/conveyor.geo
create mode 100644 examples/conveyor/conveyor.mesh
create mode 100644 examples/conveyor/conveyor.py
create mode 100644 examples/sph/README
create mode 100644 examples/sph/box.geo
create mode 100644 examples/sph/box.mesh
create mode 100644 examples/sph/cpt/a
create mode 100644 examples/sph/sph_box.py
create mode 100644 examples/sph/testKernelFunc.py
create mode 100644 examples/sph/toystar.py
create mode 100644 examples/sph/watercolumn.py
create mode 100644 examples/test/paraview-spheres-solid-section/export_text.py
create mode 100644 examples/test/paraview-spheres-solid-section/pv_section.py
create mode 100644 gui/qt4/XYZ.xpm
create mode 100644 gui/qt4/YZX.xpm
create mode 100644 gui/qt4/ZXY.xpm
create mode 100644 gui/qt4/yade-favicon.xpm
delete mode 100644 lib/triangulation/FlowBoundingSphere.cpp
delete mode 100644 lib/triangulation/PeriodicFlow.cpp
delete mode 100644 lib/triangulation/def_types.h
create mode 100644 pkg/common/SPHEngine.cpp
create mode 100644 pkg/common/SPHEngine.hpp
delete mode 100644 pkg/dem/FlowEngine.cpp
delete mode 100644 pkg/dem/FlowEngine.hpp
create mode 100644 pkg/dem/FrictViscoPM.cpp
create mode 100644 pkg/dem/FrictViscoPM.hpp
create mode 100644 pkg/dem/GeneralIntegratorInsertionSortCollider.cpp
create mode 100644 pkg/dem/GeneralIntegratorInsertionSortCollider.hpp
create mode 100644 pkg/dem/Integrator.cpp
create mode 100644 pkg/dem/Integrator.hpp
create mode 100644 pkg/dem/RungeKuttaCashKarp54Integrator.cpp
create mode 100644 pkg/dem/RungeKuttaCashKarp54Integrator.hpp
create mode 100644 pkg/dem/ViscoelasticCapillarPM.hpp
create mode 100644 pkg/lbm/HydrodynamicsLawLBM.cpp
create mode 100644 pkg/lbm/HydrodynamicsLawLBM.hpp
copy core/Dispatcher.cpp => pkg/lbm/LBMbody.cpp (56%)
create mode 100644 pkg/lbm/LBMbody.hpp
create mode 100644 pkg/lbm/LBMlink.cpp
create mode 100644 pkg/lbm/LBMlink.hpp
create mode 100644 pkg/lbm/LBMnode.cpp
create mode 100644 pkg/lbm/LBMnode.hpp
create mode 100644 pkg/pfv/DFNFlow.cpp
create mode 100644 pkg/pfv/DummyFlowEngine.cpp
create mode 100644 pkg/pfv/FlowEngine.cpp
create mode 100644 pkg/pfv/FlowEngine.hpp
create mode 100644 pkg/pfv/FlowEngine.hpp.in
create mode 100644 pkg/pfv/FlowEngine.ipp
create mode 100644 pkg/pfv/FlowEngine.ipp.in
create mode 100644 pkg/pfv/PeriodicFlowEngine.cpp
create mode 100644 pkg/pfv/SoluteFlowEngine.cpp
create mode 100644 scripts/checks-and-tests/checks/checkLiquidMigration.py
create mode 100755 scripts/update_names.sh
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