[pyfai] branch experimental updated (4f7ee09 -> dbd1be2)
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Fri Oct 17 12:40:49 UTC 2014
This is an automated email from the git hooks/post-receive script.
picca pushed a change to branch experimental
in repository pyfai.
from 4f7ee09 update the copyright file
new 1b6f03f Imported Upstream version 0.10.0
new 4989b03 Merge tag 'upstream/0.10.0' into experimental
new 4e30d01 remove all patches applyed upstream
new f151a4b update the copyright file for 0.10.0
new 18440fe update the packaging to build 0.10.0
new dbd1be2 fix compilation
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CHANGELOG.txt | 52 +-
MANIFEST.in | 27 +-
PKG-INFO | 31 +-
README.txt | 113 +-
TODO.txt | 15 +-
benchmark/benchmark.py | 706 +-
benchmark/benchmark_distortion.py | 52 +
benchmark/benchmark_ocl_csr3.py | 428 +
benchmark/{benchmark.py => benchmark_split.py} | 411 +-
build-deb.sh | 12 +-
calibration/Au.D | 21 +-
calibration/CeO2.D | 81 +-
calibration/LaB6.D | 39 +-
calibration/NaCl.D | 18 +
calibration/PBBA.D | 81 +
calibration/Si.D | 27 +-
calibration/alpha_Al2O3.D | 62 +-
debian/changelog | 10 +-
debian/control | 42 +-
debian/{control => control.new} | 4 +-
debian/copyright | 38 +-
...warded-setup-teardown-to-remove-temporary.patch | 143 -
...tream-histogram-build-when-.c-file-is-mis.patch | 34 +
...wareded-do-not-alter-the-original-poni-fi.patch | 37 -
...warded-upstream-fix-the-averageImage-test.patch | 33 -
debian/patches/series | 4 +-
debian/{pyfai.install => pyfai.install.new} | 0
...thon-pyfai.install => python-pyfai.install.new} | 0
debian/rules | 10 +-
doc/MX-calibrate.1 | 74 +-
doc/MX-calibrate.pdf | Bin 7377 -> 7268 bytes
doc/check_calib.1 | 39 +-
doc/check_calib.pdf | Bin 4148 -> 4435 bytes
doc/diff_tomo.1 | 61 +-
doc/diff_tomo.pdf | Bin 5127 -> 4990 bytes
doc/drawMask_pymca.1 | 33 +-
doc/drawMask_pymca.pdf | Bin 4166 -> 3989 bytes
doc/pyFAI-API.pdf | Bin 492113 -> 0 bytes
doc/pyFAI-average.1 | 44 +-
doc/pyFAI-average.pdf | Bin 4484 -> 4479 bytes
doc/pyFAI-calib.1 | 128 +-
doc/pyFAI-calib.pdf | Bin 8621 -> 8635 bytes
doc/pyFAI-integrate.1 | 35 +-
doc/pyFAI-integrate.pdf | Bin 4658 -> 4551 bytes
doc/pyFAI-recalib.1 | 136 +-
doc/pyFAI-recalib.pdf | Bin 8655 -> 9054 bytes
doc/pyFAI-saxs.1 | 50 +-
doc/pyFAI-saxs.pdf | Bin 5014 -> 4728 bytes
doc/pyFAI-waxs.1 | 61 +-
doc/pyFAI-waxs.pdf | Bin 4840 -> 5667 bytes
doc/pyFAI.pdf | Bin 1226788 -> 1062868 bytes
doc/source/api/pyFAI.rst | 117 +-
doc/source/biblio.rst | 72 +
doc/source/calibration.rst | 132 +
doc/source/conf.py | 6 +-
doc/source/img/benchmark.png | Bin 108107 -> 94791 bytes
doc/source/index.rst | 17 +-
doc/source/man/MX-calibrate.rst | 16 +-
doc/source/man/check_calib.rst | 30 +-
doc/source/man/diff_tomo.rst | 2 +-
doc/source/man/drawMask_pymca.rst | 2 +
doc/source/man/pyFAI-average.rst | 2 +-
doc/source/man/pyFAI-calib.rst | 43 +-
doc/source/man/pyFAI-recalib.rst | 10 +-
doc/source/man/pyFAI-waxs.rst | 8 +
doc/source/man/scripts.rst | 36 +-
doc/source/project.rst | 162 +-
doc/source/pyFAI.rst | 191 +-
openCL/ocl_azim_CSR.cl | 425 +
openCL/ocl_azim_LUT.cl | 272 +-
openCL/ocl_azim_kernel2d_2.cl | 15 +-
openCL/ocl_azim_kernel_2.cl | 13 +-
openCL/ocl_bispev.cl | 191 +
openCL/ocl_hist_pixelsplit.cl | 371 +
openCL/ocl_lut_pixelsplit.cl | 603 +
openCL/ocl_lut_pixelsplit2.cl | 603 +
openCL/ocl_lut_pixelsplit3.cl | 620 +
openCL/ocl_lut_pixelsplit_test.cl | 603 +
openCL/{ocl_azim_LUT.cl => preprocess.cl} | 189 +-
openCL/reduction_test.cl | 92 +
openCL/reduction_test4.cl | 104 +
pyFAI-src/__init__.py | 4 +-
pyFAI-src/azimuthalIntegrator.py | 1090 +-
pyFAI-src/blob_detection.py | 894 +
pyFAI-src/calibrant.py | 298 +
pyFAI-src/calibration.py | 1484 +-
pyFAI-src/detectors.py | 1546 +-
pyFAI-src/distortion.py | 338 +-
pyFAI-src/geometry.py | 361 +-
pyFAI-src/geometryRefinement.py | 67 +-
pyFAI-src/gui_utils.py | 136 +
pyFAI-src/integrate_widget.py | 208 +-
pyFAI-src/io.py | 418 +-
pyFAI-src/massif.py | 291 +
pyFAI-src/ocl_azim.py | 8 +-
pyFAI-src/{ocl_azim_lut.py => ocl_azim_csr.py} | 223 +-
pyFAI-src/{ocl_azim_lut.py => ocl_azim_csr_dis.py} | 193 +-
pyFAI-src/ocl_azim_lut.py | 171 +-
.../{ocl_azim_lut.py => ocl_hist_pixelsplit.py} | 204 +-
pyFAI-src/opencl.py | 79 +-
pyFAI-src/peakPicker.py | 889 -
pyFAI-src/peak_picker.py | 970 +
pyFAI-src/refinment2D.py | 6 +-
pyFAI-src/spline.py | 30 +-
pyFAI-src/units.py | 6 +-
pyFAI-src/utils.py | 195 +-
pyFAI-src/worker.py | 170 +-
scripts/MX-calibrate | 430 +-
scripts/check_calib | 28 +-
scripts/detector2nexus | 152 +
scripts/diff_tomo | 103 +-
scripts/drawMask_pymca | 67 +-
scripts/pyFAI-average | 68 +-
scripts/pyFAI-calib | 12 +-
scripts/pyFAI-integrate | 36 +-
scripts/pyFAI-recalib | 14 +-
scripts/pyFAI-saxs | 88 +-
scripts/pyFAI-waxs | 145 +-
scripts/refine_wavelength | 2 +-
setup.py | 579 +-
src/{relabel.c => _bispev.c} | 29159 ++++++++--------
src/_bispev.pyx | 209 +
src/{reconstruct.c => _blob.c} | 13825 ++++----
src/_blob.pyx | 87 +
src/{relabel.c => _convolution.c} | 24796 +++++++-------
src/_convolution.pyx | 131 +
src/_distortion.c | 25031 +++++++++-----
src/_distortion.pyx | 478 +-
src/{_distortion.c => _distortionCSR.c} | 28803 +++++++---------
src/{_distortion.pyx => _distortionCSR.pyx} | 495 +-
src/_geometry.c | 99 +-
src/bilinear.c | 33666 ++++++++++++-------
src/bilinear.pyx | 87 +-
src/{reconstruct.c => binary_morphology.c} | 9973 +++---
src/fastcrc.c | 89 +-
src/fastcrc.pyx | 1 +
src/fastrebin.pyx | 285 -
src/histogram.c | 14287 ++++----
src/histogram.pyx | 337 +-
src/{_geometry.c => histogram_nomp.c} | 13224 ++++----
src/histogram_nomp.pyx | 200 +
src/{histogram.c => histogram_omp.c} | 14287 ++++----
src/histogram_omp.pyx | 234 +
src/{_geometry.c => marchingsquares.c} | 6823 ++--
src/marchingsquares.pyx | 183 +
src/marchingsquares_.pyx | 113 -
src/{relabel.c => morphology.c} | 2659 +-
src/morphology.pyx | 85 +
src/reconstruct.c | 284 +-
src/relabel.c | 91 +-
src/sparse_csr.c | 2777 +-
src/splitBBox.c | 91 +-
src/{splitBBoxLUT.c => splitBBoxCSR.c} | 32973 ++++++++++--------
src/splitBBoxCSR.pyx | 1286 +
src/splitBBoxLUT.c | 16161 ++++++---
src/splitBBoxLUT.pyx | 798 +-
src/{splitBBoxLUT.c => splitBBoxLUT_vector.c} | 11793 ++++---
src/{splitBBoxLUT.pyx => splitBBoxLUT_vector.pyx} | 447 +-
src/splitPixel.c | 16791 ++++-----
src/splitPixel.pyx | 405 +-
src/{histogram.c => splitPixelFull.c} | 16494 ++++-----
src/splitPixelFull.pyx | 751 +
src/{splitPixel.c => splitPixelFullCSR.c} | 15794 ++++-----
src/splitPixelFullCSR.pyx | 1012 +
src/{splitBBox.c => splitPixelFullLUT.c} | 22277 ++++++------
src/splitPixelFullLUT.pyx | 1145 +
src/{splitPixel.c => splitPixelFullLUT_b.c} | 14935 ++++----
src/splitPixelFullLUT_b.pyx | 979 +
src/{splitPixel.c => splitPixelFullLUT_double.c} | 15208 +++++----
src/splitPixelFullLUT_double.pyx | 1091 +
...{splitPixel.c => splitPixelFullLUT_float32_b.c} | 15927 ++++-----
src/splitPixelFullLUT_float32_b.pyx | 1021 +
src/{marchingsquares_.c => xutils.c} | 4253 ++-
stdeb.cfg | 7 +-
test/testBilinear.py | 93 -
test/testDetector.py | 81 -
test/testHistogram.py | 225 -
test/test_all.py | 53 +-
...lIntegrator.py => test_azimuthal_integrator.py} | 39 +-
test/test_bilinear.py | 132 +-
test/test_bispev.py | 112 +
test/test_blob_detection.py | 74 +
test/test_calibrant.py | 69 +
test/test_convolution.py | 68 +
test/test_csr.py | 129 +
test/test_detector.py | 211 +
test/{testDistortion.py => test_distortion.py} | 0
test/{testExport.py => test_export.py} | 47 +-
test/{testFlat.py => test_flat.py} | 61 +-
test/{testGeometry.py => test_geometry.py} | 0
...ryRefinement.py => test_geometry_refinement.py} | 17 +-
test/test_histogram.py | 314 +
test/{testIntegrate.py => test_integrate.py} | 4 +-
test/test_io.py | 152 +
test/test_marchingsquares.py | 70 +
test/{testMask.py => test_mask.py} | 0
test/{testOpenCL.py => test_openCL.py} | 66 +-
test/{testPeakPicking.py => test_peak_picking.py} | 12 +-
test/{testPolarization.py => test_polarization.py} | 6 +-
test/{testSaxs.py => test_saxs.py} | 0
test/test_sparse.py | 61 +
test/test_split_pixel.py | 98 +
test/{testUtils.py => test_utils.py} | 0
test/testimages/Fairchild.edf | 200 +
test/testimages/LaB6_260210.mar3450 | Bin 0 -> 7473209 bytes
test/utilstest.py | 241 +-
206 files changed, 245528 insertions(+), 191686 deletions(-)
create mode 100755 benchmark/benchmark_distortion.py
create mode 100644 benchmark/benchmark_ocl_csr3.py
copy benchmark/{benchmark.py => benchmark_split.py} (60%)
mode change 100755 => 100644
create mode 100644 calibration/NaCl.D
create mode 100644 calibration/PBBA.D
copy debian/{control => control.new} (97%)
delete mode 100644 debian/patches/0001-feature-forwarded-setup-teardown-to-remove-temporary.patch
create mode 100644 debian/patches/0001-fix-for-upstream-histogram-build-when-.c-file-is-mis.patch
delete mode 100644 debian/patches/0002-feature-forwareded-do-not-alter-the-original-poni-fi.patch
delete mode 100644 debian/patches/0003-forwarded-upstream-fix-the-averageImage-test.patch
rename debian/{pyfai.install => pyfai.install.new} (100%)
rename debian/{python-pyfai.install => python-pyfai.install.new} (100%)
delete mode 100644 doc/pyFAI-API.pdf
create mode 100644 doc/source/biblio.rst
create mode 100644 doc/source/calibration.rst
create mode 100644 openCL/ocl_azim_CSR.cl
create mode 100644 openCL/ocl_bispev.cl
create mode 100644 openCL/ocl_hist_pixelsplit.cl
create mode 100644 openCL/ocl_lut_pixelsplit.cl
create mode 100644 openCL/ocl_lut_pixelsplit2.cl
create mode 100644 openCL/ocl_lut_pixelsplit3.cl
create mode 100644 openCL/ocl_lut_pixelsplit_test.cl
copy openCL/{ocl_azim_LUT.cl => preprocess.cl} (53%)
create mode 100644 openCL/reduction_test.cl
create mode 100644 openCL/reduction_test4.cl
create mode 100644 pyFAI-src/blob_detection.py
create mode 100644 pyFAI-src/calibrant.py
create mode 100644 pyFAI-src/gui_utils.py
create mode 100644 pyFAI-src/massif.py
copy pyFAI-src/{ocl_azim_lut.py => ocl_azim_csr.py} (50%)
copy pyFAI-src/{ocl_azim_lut.py => ocl_azim_csr_dis.py} (54%)
copy pyFAI-src/{ocl_azim_lut.py => ocl_hist_pixelsplit.py} (55%)
delete mode 100644 pyFAI-src/peakPicker.py
create mode 100644 pyFAI-src/peak_picker.py
mode change 100644 => 100755 scripts/MX-calibrate
create mode 100755 scripts/detector2nexus
mode change 100644 => 100755 scripts/pyFAI-integrate
copy src/{relabel.c => _bispev.c} (67%)
create mode 100644 src/_bispev.pyx
copy src/{reconstruct.c => _blob.c} (65%)
create mode 100644 src/_blob.pyx
copy src/{relabel.c => _convolution.c} (88%)
create mode 100644 src/_convolution.pyx
copy src/{_distortion.c => _distortionCSR.c} (58%)
copy src/{_distortion.pyx => _distortionCSR.pyx} (55%)
copy src/{reconstruct.c => binary_morphology.c} (74%)
delete mode 100644 src/fastrebin.pyx
copy src/{_geometry.c => histogram_nomp.c} (65%)
create mode 100644 src/histogram_nomp.pyx
copy src/{histogram.c => histogram_omp.c} (65%)
create mode 100644 src/histogram_omp.pyx
copy src/{_geometry.c => marchingsquares.c} (80%)
create mode 100644 src/marchingsquares.pyx
delete mode 100644 src/marchingsquares_.pyx
copy src/{relabel.c => morphology.c} (92%)
create mode 100644 src/morphology.pyx
copy src/{splitBBoxLUT.c => splitBBoxCSR.c} (54%)
create mode 100644 src/splitBBoxCSR.pyx
copy src/{splitBBoxLUT.c => splitBBoxLUT_vector.c} (77%)
copy src/{splitBBoxLUT.pyx => splitBBoxLUT_vector.pyx} (72%)
copy src/{histogram.c => splitPixelFull.c} (62%)
create mode 100644 src/splitPixelFull.pyx
copy src/{splitPixel.c => splitPixelFullCSR.c} (70%)
create mode 100644 src/splitPixelFullCSR.pyx
copy src/{splitBBox.c => splitPixelFullLUT.c} (55%)
create mode 100644 src/splitPixelFullLUT.pyx
copy src/{splitPixel.c => splitPixelFullLUT_b.c} (70%)
create mode 100644 src/splitPixelFullLUT_b.pyx
copy src/{splitPixel.c => splitPixelFullLUT_double.c} (64%)
create mode 100644 src/splitPixelFullLUT_double.pyx
copy src/{splitPixel.c => splitPixelFullLUT_float32_b.c} (70%)
create mode 100644 src/splitPixelFullLUT_float32_b.pyx
rename src/{marchingsquares_.c => xutils.c} (63%)
delete mode 100755 test/testBilinear.py
delete mode 100755 test/testDetector.py
delete mode 100755 test/testHistogram.py
rename test/{testAzimuthalIntegrator.py => test_azimuthal_integrator.py} (90%)
create mode 100755 test/test_bispev.py
create mode 100644 test/test_blob_detection.py
create mode 100644 test/test_calibrant.py
create mode 100644 test/test_convolution.py
create mode 100644 test/test_csr.py
create mode 100755 test/test_detector.py
rename test/{testDistortion.py => test_distortion.py} (100%)
rename test/{testExport.py => test_export.py} (76%)
rename test/{testFlat.py => test_flat.py} (77%)
rename test/{testGeometry.py => test_geometry.py} (100%)
rename test/{testGeometryRefinement.py => test_geometry_refinement.py} (95%)
create mode 100755 test/test_histogram.py
rename test/{testIntegrate.py => test_integrate.py} (98%)
create mode 100644 test/test_io.py
create mode 100644 test/test_marchingsquares.py
rename test/{testMask.py => test_mask.py} (100%)
rename test/{testOpenCL.py => test_openCL.py} (65%)
rename test/{testPeakPicking.py => test_peak_picking.py} (94%)
rename test/{testPolarization.py => test_polarization.py} (97%)
rename test/{testSaxs.py => test_saxs.py} (100%)
create mode 100644 test/test_sparse.py
create mode 100644 test/test_split_pixel.py
rename test/{testUtils.py => test_utils.py} (100%)
create mode 100644 test/testimages/Fairchild.edf
create mode 100644 test/testimages/LaB6_260210.mar3450
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