[r-cran-mcmcpack] 44/90: Imported Debian patch 1.0-5-1
Andreas Tille
tille at debian.org
Fri Dec 16 09:07:39 UTC 2016
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-mcmcpack.
commit dd3ede1675730674c90c42ccdce8ac3fa42cae17
Merge: 7414c8b c5faba9
Author: Chris Lawrence <lawrencc at debian.org>
Date: Tue Mar 30 20:11:33 2010 -0500
Imported Debian patch 1.0-5-1
DESCRIPTION | 10 +-
HISTORY | 4 +
NAMESPACE | 1 +
R/MCMCirtHier1d.R | 4 +-
R/MCMCirtKdHet.R | 242 +++++++++++++++
configure | 71 -----
configure.ac | 1 -
debian/changelog | 6 +
debian/control | 2 +-
debian/patches/debian-changes-1.0-5-1 | 114 +++++++
debian/patches/series | 1 +
debian/source/format | 1 +
man/MCMCirtKdHet.Rd | 190 ++++++++++++
src/MCMCirtKdHet.cc | 399 ++++++++++++++++++++++++
src/MCMCoprobit.cc | 568 +++++++++++++++++-----------------
15 files changed, 1250 insertions(+), 364 deletions(-)
diff --cc debian/changelog
index 4d3969c,0000000..ecea358
mode 100644,000000..100644
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,244 -1,0 +1,250 @@@
++mcmcpack (1.0-5-1) unstable; urgency=low
++
++ * New upstream release.
++
++ -- Chris Lawrence <lawrencc at debian.org> Tue, 30 Mar 2010 20:11:33 -0500
++
+mcmcpack (1.0-4-2) unstable; urgency=low
+
+ * Rebuild for R >= 2.10.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 26 Oct 2009 00:20:55 -0500
+
+mcmcpack (1.0-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 10 Sep 2009 00:34:49 -0500
+
+mcmcpack (1.0-3-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 30 Jul 2009 15:01:11 -0500
+
+mcmcpack (1.0-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 25 Jul 2009 01:25:18 -0500
+
+mcmcpack (1.0-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Wed, 01 Jul 2009 18:31:04 -0500
+
+mcmcpack (0.9-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 16 Mar 2009 22:18:40 -0500
+
+mcmcpack (0.9-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 04 Mar 2008 14:52:43 -0600
+
+mcmcpack (0.9-3-1) unstable; urgency=low
+
+ * New upstream release.
+ * Fix FTBFS on amd64. (Closes: #417427)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 01 Mar 2008 22:51:00 -0600
+
+mcmcpack (0.9-2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 07 Oct 2007 20:16:55 -0500
+
+mcmcpack (0.9-1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 03 Sep 2007 15:39:59 -0500
+
+mcmcpack (0.8-2-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jul 2007 17:27:59 -0500
+
+mcmcpack (0.8-1-1) unstable; urgency=low
+
+ * New upstream release
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 20 Jan 2007 21:45:31 -0600
+
+mcmcpack (0.7-4-2) unstable; urgency=low
+
+ * Look for trunc() in -lm, to fix FTBFS on m68k (and possibly other
+ platforms?). (Closes: #389400)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 8 Oct 2006 18:21:07 -0500
+
+mcmcpack (0.7-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Oct 2006 02:12:06 -0500
+
+mcmcpack (0.7-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 21 Sep 2006 21:30:32 -0500
+
+mcmcpack (0.7-2-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 1 Jun 2006 16:10:06 -0400
+
+mcmcpack (0.7-1-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revise description to omit discussion of "upcoming" models that don't
+ seem to be upcoming; add suggestions of bayesm, eco, and mnp to fill
+ in some of the gaps.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 29 Jan 2006 22:01:22 -0500
+
+mcmcpack (0.6-6-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 8 Dec 2005 08:59:17 -0500
+
+mcmcpack (0.6-5-2) unstable; urgency=low
+
+ * Fix FTBFS with gcc 4.0.2-3 and later. (Closes: #336281)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 29 Oct 2005 23:40:09 -0400
+
+mcmcpack (0.6-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 30 Jun 2005 16:03:34 -0500
+
+mcmcpack (0.6-4-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 2 Apr 2005 23:07:43 -0600
+
+mcmcpack (0.6-1-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 3 Mar 2005 19:01:23 -0600
+
+mcmcpack (0.5-2-4) unstable; urgency=low
+
+ * Really fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 11 Oct 2004 10:56:34 -0500
+
+mcmcpack (0.5-2-3) unstable; urgency=low
+
+ * Fix FTBFS on autobuilders.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Oct 2004 21:25:59 -0500
+
+mcmcpack (0.5-2-2) unstable; urgency=low
+
+ * Rebuild for R 2.0.0.
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 8 Oct 2004 00:24:03 -0500
+
+mcmcpack (0.5-2-1) unstable; urgency=low
+
+ * New upstream release. Kudos to Andrew, Kevin, and Pierre L'Ecuyer for
+ their quick response to license issues with 0.5-1.
+ * Now require r-cran-coda (>> 0.8).
+ * Include HISTORY file as upstream changelog.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Aug 2004 21:38:55 -0500
+
+mcmcpack (0.4-8-2) unstable; urgency=low
+
+ * Update dependencies for r-recommended package split.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 3 May 2004 14:15:55 -0500
+
+mcmcpack (0.4-8-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 17 Feb 2004 23:35:33 -0600
+
+mcmcpack (0.4-7-1) unstable; urgency=low
+
+ * New upstream release.
+ * Update control file description for new upstream URL.
+
+ -- Chris Lawrence <lawrencc at debian.org> Thu, 5 Feb 2004 16:50:13 -0600
+
+mcmcpack (0.4-6-1) unstable; urgency=low
+
+ * New upstream release
+ + Fixed a bug in rnoncenhypergeom()
+
+ -- Chris Lawrence <lawrencc at debian.org> Fri, 5 Dec 2003 10:33:51 -0600
+
+mcmcpack (0.4-5-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 17 Nov 2003 13:17:39 -0600
+
+mcmcpack (0.4-3-1) unstable; urgency=low
+
+ * New upstream release.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 13 Oct 2003 08:19:13 -0500
+
+mcmcpack (0.4-2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Revised packaging to be more compatible with new upstream versions.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 9 Aug 2003 22:44:39 -0500
+
+mcmcpack (0.4-1-1) unstable; urgency=low
+
+ * The "my days of being ABD are close to being over" release.
+ * New upstream release.
+ * New features:
+ + Metric and ordinal factor analysis models.
+ + k-dimensional item response theory model.
+ + A few new density and random draw functions.
+ * Install package to /usr/lib/R/site-library.
+ * Updated to standards-version 3.5.10; no substantive changes.
+ * Add Daniel Pemstein to upstream authors.
+
+ -- Chris Lawrence <lawrencc at debian.org> Tue, 10 Jun 2003 14:11:07 -0500
+
+mcmcpack (0.3-11-3) unstable; urgency=low
+
+ * Remove build hack now that R 1.7.0 has been released incorporating the
+ needed fix.
+ * Depend on r-recommended and r-base-core; remove r-base dependency.
+
+ -- Chris Lawrence <lawrencc at debian.org> Mon, 21 Apr 2003 11:33:45 -0500
+
+mcmcpack (0.3-11-2) unstable; urgency=medium
+
+ * Depend on r-cran-coda. (Closes: #187071)
+ * Note in the description that other samplers are used, in addition to
+ Gibbs sampling.
+
+ -- Chris Lawrence <lawrencc at debian.org> Sat, 5 Apr 2003 22:29:25 -0600
+
+mcmcpack (0.3-11-1) unstable; urgency=low
+
+ * Initial Release. (Closes: #169717)
+
+ -- Chris Lawrence <lawrencc at debian.org> Sun, 30 Mar 2003 08:10:27 -0600
diff --cc debian/control
index ba2ab39,0000000..d62c270
mode 100644,000000..100644
--- a/debian/control
+++ b/debian/control
@@@ -1,37 -1,0 +1,37 @@@
+Source: mcmcpack
+Section: gnu-r
+Priority: optional
+Maintainer: Chris Lawrence <lawrencc at debian.org>
+Build-Depends: debhelper (>> 7), r-base-dev (>= 2.10.0~1), r-cran-coda (>= 0.11-3), r-cran-vr (>> 7.2.8)
- Standards-Version: 3.8.3
++Standards-Version: 3.8.4
+Homepage: http://mcmcpack.wustl.edu/
+
+Package: r-cran-mcmcpack
+Architecture: any
+Depends: r-base-core (>= 2.10.0~1), ${shlibs:Depends}, r-cran-coda (>> 0.11-3), r-cran-vr (>> 7.2.8), ${misc:Depends}
+Suggests: r-cran-bayesm, r-cran-eco, r-cran-mnp
+Description: GNU R routines for Markov chain Monte Carlo model estimation
+ This is a set of routines for GNU R that implement various
+ statistical and econometric models using Markov chain Monte Carlo
+ (MCMC) estimation, which allows "solving" models that would otherwise
+ be intractable with traditional techniques, particularly problems in
+ Bayesian statistics (where one or more "priors" are used as part of
+ the estimation procedure, instead of an assumption of ignorance about
+ the "true" point estimates), although MCMC can also be used to solve
+ frequentist statistical problems with uninformative priors. MCMC
+ techniques are also preferable over direct estimation in the presence
+ of missing data.
+ .
+ Currently implemented are a number of ecological inference (EI)
+ routines (for estimating individual-level attributes or behavior from
+ aggregate data, such as electoral returns or census results), as well
+ as models for traditional linear panel and cross-sectional data, some
+ visualization routines for EI diagnostics, two item-response theory
+ (or ideal-point estimation) models, metric, ordinal, and
+ mixed-response factor analysis, and models for Gaussian (linear) and
+ Poisson regression, logistic regression (or logit), and binary and
+ ordinal-response probit models.
+ .
+ The suggested packages (r-cran-bayesm, -eco, and -mnp) contain
+ additional models that may also be useful for those interested in
+ this package.
diff --cc debian/patches/debian-changes-1.0-5-1
index 0000000,0000000..76b91e8
new file mode 100644
--- /dev/null
+++ b/debian/patches/debian-changes-1.0-5-1
@@@ -1,0 -1,0 +1,114 @@@
++Description: Upstream changes introduced in version 1.0-5-1
++ This patch has been created by dpkg-source during the package build.
++ Here's the last changelog entry, hopefully it gives details on why
++ those changes were made:
++ .
++ mcmcpack (1.0-5-1) unstable; urgency=low
++ .
++ * New upstream release.
++ .
++ The person named in the Author field signed this changelog entry.
++Author: Chris Lawrence <lawrencc at debian.org>
++
++---
++The information above should follow the Patch Tagging Guidelines, please
++checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
++are templates for supplementary fields that you might want to add:
++
++Origin: <vendor|upstream|other>, <url of original patch>
++Bug: <url in upstream bugtracker>
++Bug-Debian: http://bugs.debian.org/<bugnumber>
++Forwarded: <no|not-needed|url proving that it has been forwarded>
++Reviewed-By: <name and email of someone who approved the patch>
++Last-Update: <YYYY-MM-DD>
++
++--- mcmcpack-1.0-5.orig/configure.ac
+++++ mcmcpack-1.0-5/configure.ac
++@@ -22,6 +22,7 @@ if test "${GXX}" = yes; then
++ fi
++
++ AC_CHECK_HEADERS(ieeefp.h, [MV_HAVE_IEEEFP_H="-DHAVE_IEEEFP_H"], [MV_HAVE_IEEFP_H=""])
+++AC_CHECK_LIB(m, trunc)
++ AC_CHECK_FUNCS(trunc, [MV_HAVE_TRUNC="-DHAVE_TRUNC"], [MV_HAVE_TRUNC=""])
++ AC_SUBST(MV_HAVE_IEEEFP_H)
++ AC_SUBST(MV_HAVE_TRUNC)
++--- mcmcpack-1.0-5.orig/configure
+++++ mcmcpack-1.0-5/configure
++@@ -3765,6 +3765,77 @@ fi
++ done
++
++
+++{ echo "$as_me:$LINENO: checking for trunc in -lm" >&5
+++echo $ECHO_N "checking for trunc in -lm... $ECHO_C" >&6; }
+++if test "${ac_cv_lib_m_trunc+set}" = set; then
+++ echo $ECHO_N "(cached) $ECHO_C" >&6
+++else
+++ ac_check_lib_save_LIBS=$LIBS
+++LIBS="-lm $LIBS"
+++cat >conftest.$ac_ext <<_ACEOF
+++/* confdefs.h. */
+++_ACEOF
+++cat confdefs.h >>conftest.$ac_ext
+++cat >>conftest.$ac_ext <<_ACEOF
+++/* end confdefs.h. */
+++
+++/* Override any GCC internal prototype to avoid an error.
+++ Use char because int might match the return type of a GCC
+++ builtin and then its argument prototype would still apply. */
+++#ifdef __cplusplus
+++extern "C"
+++#endif
+++char trunc ();
+++int
+++main ()
+++{
+++return trunc ();
+++ ;
+++ return 0;
+++}
+++_ACEOF
+++rm -f conftest.$ac_objext conftest$ac_exeext
+++if { (ac_try="$ac_link"
+++case "(($ac_try" in
+++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+++ *) ac_try_echo=$ac_try;;
+++esac
+++eval "echo \"\$as_me:$LINENO: $ac_try_echo\"") >&5
+++ (eval "$ac_link") 2>conftest.er1
+++ ac_status=$?
+++ grep -v '^ *+' conftest.er1 >conftest.err
+++ rm -f conftest.er1
+++ cat conftest.err >&5
+++ echo "$as_me:$LINENO: \$? = $ac_status" >&5
+++ (exit $ac_status); } && {
+++ test -z "$ac_c_werror_flag" ||
+++ test ! -s conftest.err
+++ } && test -s conftest$ac_exeext &&
+++ $as_test_x conftest$ac_exeext; then
+++ ac_cv_lib_m_trunc=yes
+++else
+++ echo "$as_me: failed program was:" >&5
+++sed 's/^/| /' conftest.$ac_ext >&5
+++
+++ ac_cv_lib_m_trunc=no
+++fi
+++
+++rm -f core conftest.err conftest.$ac_objext conftest_ipa8_conftest.oo \
+++ conftest$ac_exeext conftest.$ac_ext
+++LIBS=$ac_check_lib_save_LIBS
+++fi
+++{ echo "$as_me:$LINENO: result: $ac_cv_lib_m_trunc" >&5
+++echo "${ECHO_T}$ac_cv_lib_m_trunc" >&6; }
+++if test $ac_cv_lib_m_trunc = yes; then
+++ cat >>confdefs.h <<_ACEOF
+++#define HAVE_LIBM 1
+++_ACEOF
+++
+++ LIBS="-lm $LIBS"
+++
+++fi
+++
+++
++ for ac_func in trunc
++ do
++ as_ac_var=`echo "ac_cv_func_$ac_func" | $as_tr_sh`
diff --cc debian/patches/series
index 0000000,0000000..d403531
new file mode 100644
--- /dev/null
+++ b/debian/patches/series
@@@ -1,0 -1,0 +1,1 @@@
++debian-changes-1.0-5-1
diff --cc debian/source/format
index 0000000,0000000..163aaf8
new file mode 100644
--- /dev/null
+++ b/debian/source/format
@@@ -1,0 -1,0 +1,1 @@@
++3.0 (quilt)
--
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