[pysph] branch master updated (571d277 -> 782b4ea)

Anton Gladky gladk at moszumanska.debian.org
Tue Feb 9 17:39:46 UTC 2016


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gladk pushed a change to branch master
in repository pysph.

      from  571d277   Update changelog.
      adds  725acf5   Imported Upstream version 0~20160122.git1fe4786
       new  8696a4a   Merge tag 'upstream/0_20160122.git1fe4786'
       new  a1a3d77   Refresh patches.
       new  456e370   Add python-moko as Depends.
       new  f6238bf   Minor fix in d/rules.
       new  a8f501b   Apply cme fix dpkg.
       new  73d0d1d   Drop site.py. (Closes: #801902)
       new  782b4ea   Update changelog.

The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                         |   1 +
 CHANGES.rst                                        |  92 ++
 MANIFEST.in                                        |   6 +-
 README.rst                                         |  51 +-
 appveyor-run-env.cmd                               |   6 -
 appveyor.yml                                       |  23 +-
 debian/changelog                                   |  11 +
 debian/control                                     |  13 +-
 debian/copyright                                   |   2 +-
 debian/patches/10_remove_sphinx_module.patch       |   6 +-
 debian/pysph-viewer.install                        |   2 +-
 debian/{pysph_viewer.1 => pysph.1}                 |   0
 debian/rules                                       |   3 +-
 docs/source/design/overview.rst                    |  18 +-
 docs/source/installation.rst                       | 197 +++--
 docs/source/overview.rst                           |  13 +
 docs/source/reference/solver.rst                   |   5 +
 docs/source/tutorial/circular_patch.rst            | 357 +++++---
 docs/source/using_pysph.rst                        |   2 +-
 examples/README.rst                                |  12 +
 examples/SPHERIC/moving_square.py                  | 312 -------
 examples/SPHysics/dambreak_sphysics.py             |  92 --
 examples/dam_break.py                              | 175 ----
 examples/dam_break3D.py                            | 157 ----
 examples/elliptical_drop.py                        | 176 ----
 examples/gas_dynamics/noh.py                       | 157 ----
 examples/gas_dynamics/sedov.py                     | 142 ----
 examples/gas_dynamics/shocktube.py                 | 210 -----
 examples/gas_dynamics/shocktube1d.py               | 215 -----
 examples/hydrostatic_tank.py                       | 309 -------
 examples/performance/cube.py                       | 112 ---
 examples/rigid_body/dam_break3D_sph.py             | 140 ----
 examples/rigid_body/rigid_block_in_tank.py         | 195 -----
 examples/rigid_body/rigid_collision.py             |  98 ---
 examples/rigid_body/simple_rigid_body.py           |  73 --
 examples/solid_mech/rings.py                       | 192 -----
 examples/solid_mech/taylor_bar.py                  | 204 -----
 examples/surface_tension/circular_droplet.py       | 267 ------
 examples/surface_tension/khi_sy11.py               | 270 ------
 examples/surface_tension/khi_tvf.py                | 296 -------
 examples/surface_tension/square_droplet.py         | 400 ---------
 examples/transport_velocity/cavity.py              | 201 -----
 examples/transport_velocity/channel_results.py     |  91 --
 examples/transport_velocity/couette.py             | 210 -----
 examples/transport_velocity/lattice_cylinders.py   | 205 -----
 examples/transport_velocity/ldcavity_results.py    |  94 ---
 examples/transport_velocity/periodic_cylinders.py  | 210 -----
 examples/transport_velocity/poiseuille.py          | 209 -----
 examples/transport_velocity/rayleigh_taylor.py     | 233 ------
 examples/transport_velocity/taylor_green.py        | 148 ----
 examples/transport_velocity/taylor_green_stats.py  |  49 --
 examples/trivial_inlet_outlet.py                   | 122 ---
 pysph/__init__.py                                  |  51 +-
 pysph/base/capture_stream.py                       |  84 ++
 pysph/base/ext_module.py                           | 128 ++-
 pysph/base/linalg3.pxd                             |  10 +
 pysph/base/linalg3.pyx                             | 538 ++++++++++++
 pysph/base/particle_array.pyx                      |  17 +-
 pysph/base/tests/particle_array_tests.py           |  47 +-
 pysph/base/tests/test_capture_stream.py            |  73 ++
 pysph/base/tests/test_ext_module.py                |  63 ++
 pysph/base/tests/test_linalg3.py                   | 159 ++++
 pysph/base/utils.py                                | 151 ++--
 pysph/{base => examples}/__init__.py               |   0
 .../examples/_db_geometry.py                       |   0
 pysph/examples/cavity.py                           | 328 ++++++++
 pysph/examples/couette.py                          | 262 ++++++
 pysph/examples/cube.py                             | 113 +++
 pysph/examples/dam_break_2d.py                     | 158 ++++
 pysph/examples/dam_break_3d.py                     | 100 +++
 pysph/examples/db_exp_data.py                      |  84 ++
 pysph/examples/elliptical_drop.py                  | 265 ++++++
 pysph/{base => examples/gas_dynamics}/__init__.py  |   0
 .../ndspmhd-sedov-initial-conditions.npz           | Bin
 pysph/examples/gas_dynamics/noh.py                 | 153 ++++
 pysph/examples/gas_dynamics/sedov.py               | 138 +++
 pysph/examples/gas_dynamics/shocktube.py           | 217 +++++
 pysph/examples/gas_dynamics/shocktube1d.py         | 221 +++++
 pysph/examples/ghia_cavity_data.py                 |  75 ++
 pysph/examples/hydrostatic_tank.py                 | 323 +++++++
 pysph/examples/lattice_cylinders.py                | 274 ++++++
 pysph/examples/periodic_cylinders.py               | 325 +++++++
 pysph/examples/poiseuille.py                       | 304 +++++++
 pysph/examples/rayleigh_taylor.py                  | 235 ++++++
 {examples => pysph/examples}/rigid_body/README.rst |   0
 pysph/{base => examples/rigid_body}/__init__.py    |   0
 pysph/examples/rigid_body/bouncing_cube.py         |  91 ++
 pysph/examples/rigid_body/bouncing_cubes.py        | 118 +++
 pysph/examples/rigid_body/dam_break3D_sph.py       | 137 +++
 pysph/examples/rigid_body/rigid_block_in_tank.py   | 191 +++++
 pysph/examples/rigid_body/simple.py                |  65 ++
 {examples => pysph/examples}/rigid_body/sph.vtk.gz | Bin
 pysph/examples/run.py                              | 184 ++++
 pysph/{base => examples/solid_mech}/__init__.py    |   0
 pysph/examples/solid_mech/rings.py                 | 188 +++++
 pysph/examples/solid_mech/taylor_bar.py            | 200 +++++
 pysph/{base => examples/spheric}/__init__.py       |   0
 pysph/examples/spheric/moving_square.py            | 321 +++++++
 .../SPHysics => pysph/examples/sphysics}/INDAT.gz  | Bin
 .../SPHysics => pysph/examples/sphysics}/IPART.gz  | Bin
 pysph/{base => examples/sphysics}/__init__.py      |   0
 pysph/examples/sphysics/dambreak_sphysics.py       | 106 +++
 .../{base => examples/surface_tension}/__init__.py |   0
 pysph/examples/surface_tension/circular_droplet.py | 261 ++++++
 pysph/examples/surface_tension/khi_sy11.py         | 270 ++++++
 pysph/examples/surface_tension/khi_tvf.py          | 290 +++++++
 pysph/examples/surface_tension/square_droplet.py   | 406 +++++++++
 pysph/examples/taylor_green.py                     | 324 +++++++
 pysph/{base => examples/tests}/__init__.py         |   0
 pysph/examples/tests/test_examples.py              |  54 ++
 pysph/examples/trivial_inlet_outlet.py             | 135 +++
 pysph/parallel/parallel_manager.pyx                |   8 +-
 pysph/parallel/tests/IPART.txt.gz                  | Bin 122599 -> 0 bytes
 pysph/parallel/tests/cavity.py                     | 205 +----
 pysph/parallel/tests/dambreak3D.py                 | 124 ---
 pysph/parallel/tests/elliptical_drop.py            | 135 +--
 pysph/parallel/tests/example_test_case.py          |  21 +-
 pysph/parallel/tests/test_openmp.py                |  15 +-
 pysph/parallel/tests/test_parallel_run.py          |  21 +-
 pysph/solver/application.py                        | 932 +++++++++++++--------
 pysph/solver/solver.py                             | 149 ++--
 pysph/solver/tests/test_application.py             |  72 ++
 pysph/solver/tests/test_solver.py                  | 100 +++
 pysph/solver/tests/test_solver_utils.py            |  23 +
 pysph/solver/tools.py                              |  85 ++
 pysph/solver/utils.py                              | 227 ++---
 pysph/sph/acceleration_eval_cython.mako            |   2 +-
 pysph/sph/basic_equations.py                       |  12 +-
 pysph/sph/boundary_equations.py                    |   4 +-
 pysph/sph/equation.py                              |   4 +-
 pysph/sph/gas_dynamics/basic.py                    |   8 +-
 pysph/sph/iisph.py                                 |  20 +-
 pysph/sph/integrator_step.py                       |  26 +-
 pysph/sph/misc/advection.py                        |   2 +-
 pysph/sph/rigid_body.py                            | 300 ++++---
 pysph/sph/solid_mech/basic.py                      |  57 +-
 pysph/sph/solid_mech/hvi.py                        |   5 +-
 pysph/sph/solid_mech/linalg.pxd                    |  15 -
 pysph/sph/solid_mech/linalg.pyx                    | 620 --------------
 pysph/sph/surface_tension.py                       |  18 +-
 pysph/sph/tests/test_equations.py                  |   9 +-
 pysph/sph/wc/basic.py                              |  30 +-
 pysph/sph/wc/transport_velocity.py                 | 200 +++--
 pysph/sph/wc/viscosity.py                          |   8 +-
 pysph/tools/automation.py                          | 353 ++++++++
 pysph/tools/cli.py                                 |  64 ++
 pysph/tools/interpolator.py                        |  21 +-
 pysph/tools/mayavi_viewer.py                       | 142 +++-
 pysph/tools/pprocess.py                            |  39 +-
 pysph/tools/run_parallel_script.py                 |   6 +
 pysph/tools/sph_evaluator.py                       |  59 ++
 pysph/tools/sphysics.py                            |  29 +-
 pysph/tools/tests/test_sph_evaluator.py            |  76 ++
 pyzoltan/core/generator.py                         |  23 +-
 pyzoltan/core/tests/geometric_partitioner.py       |   6 +-
 pyzoltan/core/tests/test_zoltan.py                 |   2 +-
 requirements-2.6.txt                               |   4 +-
 requirements.txt                                   |   3 +-
 setup.py                                           |  48 +-
 shippable.yml                                      |  38 +-
 tox.ini                                            |  15 +
 windows_env.bat                                    |   3 -
 162 files changed, 10928 insertions(+), 8481 deletions(-)
 create mode 100644 CHANGES.rst
 delete mode 100644 appveyor-run-env.cmd
 rename debian/{pysph_viewer.1 => pysph.1} (100%)
 create mode 100644 examples/README.rst
 delete mode 100644 examples/SPHERIC/moving_square.py
 delete mode 100644 examples/SPHysics/dambreak_sphysics.py
 delete mode 100644 examples/dam_break.py
 delete mode 100644 examples/dam_break3D.py
 delete mode 100644 examples/elliptical_drop.py
 delete mode 100644 examples/gas_dynamics/noh.py
 delete mode 100644 examples/gas_dynamics/sedov.py
 delete mode 100644 examples/gas_dynamics/shocktube.py
 delete mode 100644 examples/gas_dynamics/shocktube1d.py
 delete mode 100644 examples/hydrostatic_tank.py
 delete mode 100644 examples/performance/cube.py
 delete mode 100644 examples/rigid_body/dam_break3D_sph.py
 delete mode 100644 examples/rigid_body/rigid_block_in_tank.py
 delete mode 100644 examples/rigid_body/rigid_collision.py
 delete mode 100644 examples/rigid_body/simple_rigid_body.py
 delete mode 100644 examples/solid_mech/rings.py
 delete mode 100644 examples/solid_mech/taylor_bar.py
 delete mode 100644 examples/surface_tension/circular_droplet.py
 delete mode 100644 examples/surface_tension/khi_sy11.py
 delete mode 100644 examples/surface_tension/khi_tvf.py
 delete mode 100644 examples/surface_tension/square_droplet.py
 delete mode 100644 examples/transport_velocity/cavity.py
 delete mode 100644 examples/transport_velocity/channel_results.py
 delete mode 100644 examples/transport_velocity/couette.py
 delete mode 100644 examples/transport_velocity/lattice_cylinders.py
 delete mode 100644 examples/transport_velocity/ldcavity_results.py
 delete mode 100644 examples/transport_velocity/periodic_cylinders.py
 delete mode 100644 examples/transport_velocity/poiseuille.py
 delete mode 100644 examples/transport_velocity/rayleigh_taylor.py
 delete mode 100644 examples/transport_velocity/taylor_green.py
 delete mode 100644 examples/transport_velocity/taylor_green_stats.py
 delete mode 100644 examples/trivial_inlet_outlet.py
 create mode 100644 pysph/base/capture_stream.py
 create mode 100644 pysph/base/linalg3.pxd
 create mode 100644 pysph/base/linalg3.pyx
 create mode 100644 pysph/base/tests/test_capture_stream.py
 create mode 100644 pysph/base/tests/test_linalg3.py
 copy pysph/{base => examples}/__init__.py (100%)
 rename examples/db_geometry.py => pysph/examples/_db_geometry.py (100%)
 create mode 100644 pysph/examples/cavity.py
 create mode 100644 pysph/examples/couette.py
 create mode 100644 pysph/examples/cube.py
 create mode 100644 pysph/examples/dam_break_2d.py
 create mode 100644 pysph/examples/dam_break_3d.py
 create mode 100644 pysph/examples/db_exp_data.py
 create mode 100644 pysph/examples/elliptical_drop.py
 copy pysph/{base => examples/gas_dynamics}/__init__.py (100%)
 rename {examples => pysph/examples}/gas_dynamics/ndspmhd-sedov-initial-conditions.npz (100%)
 create mode 100644 pysph/examples/gas_dynamics/noh.py
 create mode 100644 pysph/examples/gas_dynamics/sedov.py
 create mode 100644 pysph/examples/gas_dynamics/shocktube.py
 create mode 100644 pysph/examples/gas_dynamics/shocktube1d.py
 create mode 100644 pysph/examples/ghia_cavity_data.py
 create mode 100644 pysph/examples/hydrostatic_tank.py
 create mode 100644 pysph/examples/lattice_cylinders.py
 create mode 100644 pysph/examples/periodic_cylinders.py
 create mode 100644 pysph/examples/poiseuille.py
 create mode 100644 pysph/examples/rayleigh_taylor.py
 rename {examples => pysph/examples}/rigid_body/README.rst (100%)
 copy pysph/{base => examples/rigid_body}/__init__.py (100%)
 create mode 100644 pysph/examples/rigid_body/bouncing_cube.py
 create mode 100644 pysph/examples/rigid_body/bouncing_cubes.py
 create mode 100644 pysph/examples/rigid_body/dam_break3D_sph.py
 create mode 100644 pysph/examples/rigid_body/rigid_block_in_tank.py
 create mode 100644 pysph/examples/rigid_body/simple.py
 rename {examples => pysph/examples}/rigid_body/sph.vtk.gz (100%)
 create mode 100644 pysph/examples/run.py
 copy pysph/{base => examples/solid_mech}/__init__.py (100%)
 create mode 100644 pysph/examples/solid_mech/rings.py
 create mode 100644 pysph/examples/solid_mech/taylor_bar.py
 copy pysph/{base => examples/spheric}/__init__.py (100%)
 create mode 100644 pysph/examples/spheric/moving_square.py
 rename {examples/SPHysics => pysph/examples/sphysics}/INDAT.gz (100%)
 rename {examples/SPHysics => pysph/examples/sphysics}/IPART.gz (100%)
 copy pysph/{base => examples/sphysics}/__init__.py (100%)
 create mode 100644 pysph/examples/sphysics/dambreak_sphysics.py
 copy pysph/{base => examples/surface_tension}/__init__.py (100%)
 create mode 100644 pysph/examples/surface_tension/circular_droplet.py
 create mode 100644 pysph/examples/surface_tension/khi_sy11.py
 create mode 100644 pysph/examples/surface_tension/khi_tvf.py
 create mode 100644 pysph/examples/surface_tension/square_droplet.py
 create mode 100644 pysph/examples/taylor_green.py
 copy pysph/{base => examples/tests}/__init__.py (100%)
 create mode 100644 pysph/examples/tests/test_examples.py
 create mode 100644 pysph/examples/trivial_inlet_outlet.py
 delete mode 100644 pysph/parallel/tests/IPART.txt.gz
 delete mode 100644 pysph/parallel/tests/dambreak3D.py
 create mode 100644 pysph/solver/tests/test_application.py
 create mode 100644 pysph/solver/tests/test_solver.py
 create mode 100644 pysph/solver/tools.py
 delete mode 100644 pysph/sph/solid_mech/linalg.pxd
 delete mode 100644 pysph/sph/solid_mech/linalg.pyx
 create mode 100644 pysph/tools/automation.py
 create mode 100644 pysph/tools/cli.py
 create mode 100644 pysph/tools/sph_evaluator.py
 create mode 100644 pysph/tools/tests/test_sph_evaluator.py
 create mode 100644 tox.ini
 delete mode 100644 windows_env.bat

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