[mlpack] branch master updated (b9b7d07 -> 7fc993b)

Barak A. Pearlmutter barak+git at pearlmutter.net
Mon Feb 15 19:34:21 UTC 2016


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bap pushed a change to branch master
in repository mlpack.

      from  b9b7d07   log changes
       new  435cfa1   Change to BSD license!  This was an embarrassing mistake!
       new  a8c993f   Add functions that allow changing training-time parameters.
       new  66bb497   Update to latest version.
       new  10907ad   Be sure to serialize and deserialize in the same way!
       new  3fcd8c0   Fix closing parenthesis.
       new  d13d417   Fix bad memory handling and write a test for it.
       new  d79fab7   Loosen tolerances to increase the probability of successful tests.
       new  a3222fd   Include correct headers.
       new  41ca156   Handle an edge case when all the points are the same.
       new  97bcd60   Force a minimum value on the diagonal.
       new  818f132   spelling
       new  2d75791   COPYRIGHT.txt, repeated field and lintian tag copyright-refers-to-deprecated-bsd-license-file
       new  01cd38c   Fix confusion in error message
       new  3690663   Print correct parameter name.
       new  5a41a4b   Widen tolerances so tests succeed more.
       new  78fac4f   Update GetParam<>(parameterName) per marcos
       new  9446c3f   Print status while loading.
       new  b40d850   Fix issue that caused hanging tests: use the intended tolerance.
       new  fb4c078   Remove self assignment.
       new  41a4cad   Refactor to allow arbitrary types for Range.
       new  a8b5100   Fix typo: we should be checking HAVE_LAPACK not LAPACK_FOUND.
       new  f490ec5   Better error output for ARFF.
       new  f4888d9   Check number of columns.
       new  9935250   A better positive definite constraint strategy.
       new  fe60c6b   Use CMAKE_CURRENT_SOURCE_DIR during files generation.
       new  364f587   Widen tolerances; PositiveDefiniteConstraint seems to change things.
       new  29639af   Fix bug where arma_config.hpp wouldn't be installed.
       new  698e040   Update version number.  I forgot to do this!
       new  a964357   Loosen tolerance further. This is better-tested than my last attempt and appears to have a very low failure rate.
       new  3a9e17c   Update history.
       new  2614c3a   Loosen tolerances to prevent spurious test failures.
       new  8628bce   Preferentially find ATLAS libraries.
       new  8f8b14f   Update version number for release.
       new  0c66ad8   Add new contributors... how did I forget this?
       new  ddb32d7   Document most recent changes.
       new  7d1886e   Update to mlpack 2.0.1.
       new  8992704   Update version.hpp.
       new  7e1c6d6   Merge tag 'upstream/2.0.1'
       new  dfe3e1b   log changes
       new  7fc993b   forward port quilt patches

The 40 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMake/ARMA_FindBLAS.cmake                          |  11 +-
 CMake/ARMA_FindLAPACK.cmake                        |  13 +-
 CMake/CreateArmaConfigInfo.cmake                   |  12 +-
 CMake/CreateGitVersionHeader.cmake                 |  12 +-
 CMake/FindArmadillo.cmake                          |   8 +-
 CMakeLists.txt                                     |  22 +-
 COPYRIGHT.txt                                      | 115 +++++++----
 Doxyfile                                           |   2 +-
 HISTORY.md                                         |  33 ++-
 README.md                                          |   2 +-
 debian/changelog                                   |   6 +
 debian/patches/0001-build-Doxygen.patch            |   4 +-
 debian/patches/0002-spelling.patch                 | 221 ---------------------
 debian/patches/0003-Doxygen-timestamp.patch        |   2 +-
 debian/patches/series                              |   1 -
 doc/guide/build.hpp                                |   4 +-
 doc/tutorials/amf/amf.txt                          |   8 +-
 src/mlpack/core.hpp                                |  20 +-
 src/mlpack/core/data/dataset_info.hpp              |  18 +-
 src/mlpack/core/data/dataset_info_impl.hpp         |  18 +-
 src/mlpack/core/data/extension.hpp                 |  18 +-
 src/mlpack/core/data/format.hpp                    |  18 +-
 src/mlpack/core/data/load.hpp                      |  18 +-
 src/mlpack/core/data/load_arff.hpp                 |  18 +-
 src/mlpack/core/data/load_arff_impl.hpp            |  39 ++--
 src/mlpack/core/data/load_impl.hpp                 |  20 +-
 src/mlpack/core/data/normalize_labels.hpp          |  18 +-
 src/mlpack/core/data/normalize_labels_impl.hpp     |  18 +-
 src/mlpack/core/data/save.hpp                      |  18 +-
 src/mlpack/core/data/save_impl.hpp                 |  18 +-
 src/mlpack/core/data/serialization_shim.hpp        |  18 +-
 src/mlpack/core/dists/discrete_distribution.cpp    |  18 +-
 src/mlpack/core/dists/discrete_distribution.hpp    |  18 +-
 src/mlpack/core/dists/gaussian_distribution.cpp    |  18 +-
 src/mlpack/core/dists/gaussian_distribution.hpp    |  18 +-
 src/mlpack/core/dists/laplace_distribution.cpp     |  18 +-
 src/mlpack/core/dists/laplace_distribution.hpp     |  18 +-
 src/mlpack/core/dists/regression_distribution.cpp  |  18 +-
 src/mlpack/core/dists/regression_distribution.hpp  |  18 +-
 src/mlpack/core/kernels/cosine_distance.hpp        |  18 +-
 src/mlpack/core/kernels/cosine_distance_impl.hpp   |  18 +-
 src/mlpack/core/kernels/epanechnikov_kernel.cpp    |  18 +-
 src/mlpack/core/kernels/epanechnikov_kernel.hpp    |  18 +-
 .../core/kernels/epanechnikov_kernel_impl.hpp      |  18 +-
 src/mlpack/core/kernels/example_kernel.hpp         |  18 +-
 src/mlpack/core/kernels/gaussian_kernel.hpp        |  18 +-
 .../core/kernels/hyperbolic_tangent_kernel.hpp     |  18 +-
 src/mlpack/core/kernels/kernel_traits.hpp          |  18 +-
 src/mlpack/core/kernels/laplacian_kernel.hpp       |  18 +-
 src/mlpack/core/kernels/linear_kernel.hpp          |  18 +-
 src/mlpack/core/kernels/polynomial_kernel.hpp      |  18 +-
 .../core/kernels/pspectrum_string_kernel.cpp       |  18 +-
 .../core/kernels/pspectrum_string_kernel.hpp       |  18 +-
 .../core/kernels/pspectrum_string_kernel_impl.hpp  |  18 +-
 src/mlpack/core/kernels/spherical_kernel.hpp       |  18 +-
 src/mlpack/core/kernels/triangular_kernel.hpp      |  18 +-
 src/mlpack/core/math/clamp.hpp                     |  18 +-
 src/mlpack/core/math/columns_to_blocks.cpp         |  18 +-
 src/mlpack/core/math/columns_to_blocks.hpp         |  18 +-
 src/mlpack/core/math/lin_alg.cpp                   |  18 +-
 src/mlpack/core/math/lin_alg.hpp                   |  18 +-
 src/mlpack/core/math/lin_alg_impl.hpp              |  18 +-
 src/mlpack/core/math/random.cpp                    |  18 +-
 src/mlpack/core/math/random.hpp                    |  18 +-
 src/mlpack/core/math/random_basis.cpp              |  18 +-
 src/mlpack/core/math/random_basis.hpp              |  18 +-
 src/mlpack/core/math/range.hpp                     |  82 ++++----
 src/mlpack/core/math/range_impl.hpp                |  91 +++++----
 src/mlpack/core/math/round.hpp                     |  18 +-
 src/mlpack/core/metrics/ip_metric.hpp              |  18 +-
 src/mlpack/core/metrics/ip_metric_impl.hpp         |  18 +-
 src/mlpack/core/metrics/lmetric.hpp                |  18 +-
 src/mlpack/core/metrics/lmetric_impl.hpp           |  18 +-
 src/mlpack/core/metrics/mahalanobis_distance.hpp   |  18 +-
 .../core/metrics/mahalanobis_distance_impl.hpp     |  18 +-
 .../optimizers/aug_lagrangian/aug_lagrangian.hpp   |  18 +-
 .../aug_lagrangian/aug_lagrangian_function.hpp     |  18 +-
 .../aug_lagrangian_function_impl.hpp               |  18 +-
 .../aug_lagrangian/aug_lagrangian_impl.hpp         |  18 +-
 .../aug_lagrangian_test_functions.cpp              |  18 +-
 .../aug_lagrangian_test_functions.hpp              |  18 +-
 src/mlpack/core/optimizers/lbfgs/lbfgs.hpp         |  18 +-
 src/mlpack/core/optimizers/lbfgs/lbfgs_impl.hpp    |  18 +-
 .../core/optimizers/lbfgs/test_functions.cpp       |  18 +-
 .../core/optimizers/lbfgs/test_functions.hpp       |  18 +-
 .../core/optimizers/sa/exponential_schedule.hpp    |  18 +-
 src/mlpack/core/optimizers/sa/sa.hpp               |  18 +-
 src/mlpack/core/optimizers/sa/sa_impl.hpp          |  18 +-
 src/mlpack/core/optimizers/sdp/lrsdp.hpp           |  18 +-
 src/mlpack/core/optimizers/sdp/lrsdp_function.hpp  |  18 +-
 .../core/optimizers/sdp/lrsdp_function_impl.hpp    |  18 +-
 src/mlpack/core/optimizers/sdp/lrsdp_impl.hpp      |  18 +-
 src/mlpack/core/optimizers/sdp/primal_dual.hpp     |  18 +-
 .../core/optimizers/sdp/primal_dual_impl.hpp       |  18 +-
 src/mlpack/core/optimizers/sdp/sdp.hpp             |  18 +-
 src/mlpack/core/optimizers/sdp/sdp_impl.hpp        |  18 +-
 src/mlpack/core/optimizers/sgd/sgd.hpp             |  18 +-
 src/mlpack/core/optimizers/sgd/sgd_impl.hpp        |  18 +-
 src/mlpack/core/optimizers/sgd/test_function.cpp   |  18 +-
 src/mlpack/core/optimizers/sgd/test_function.hpp   |  18 +-
 src/mlpack/core/tree/ballbound.hpp                 |  18 +-
 src/mlpack/core/tree/ballbound_impl.hpp            |  20 +-
 src/mlpack/core/tree/binary_space_tree.hpp         |  18 +-
 .../tree/binary_space_tree/binary_space_tree.hpp   |  18 +-
 .../binary_space_tree/binary_space_tree_impl.hpp   |  18 +-
 .../breadth_first_dual_tree_traverser.hpp          |  18 +-
 .../breadth_first_dual_tree_traverser_impl.hpp     |  18 +-
 .../tree/binary_space_tree/dual_tree_traverser.hpp |  18 +-
 .../binary_space_tree/dual_tree_traverser_impl.hpp |  18 +-
 .../core/tree/binary_space_tree/mean_split.hpp     |  18 +-
 .../tree/binary_space_tree/mean_split_impl.hpp     |  18 +-
 .../core/tree/binary_space_tree/midpoint_split.hpp |  18 +-
 .../tree/binary_space_tree/midpoint_split_impl.hpp |  19 +-
 .../binary_space_tree/single_tree_traverser.hpp    |  18 +-
 .../single_tree_traverser_impl.hpp                 |  18 +-
 src/mlpack/core/tree/binary_space_tree/traits.hpp  |  18 +-
 src/mlpack/core/tree/binary_space_tree/typedef.hpp |  18 +-
 src/mlpack/core/tree/bound_traits.hpp              |  18 +-
 src/mlpack/core/tree/bounds.hpp                    |  18 +-
 src/mlpack/core/tree/cosine_tree/cosine_tree.cpp   |  20 +-
 src/mlpack/core/tree/cosine_tree/cosine_tree.hpp   |  18 +-
 src/mlpack/core/tree/cover_tree.hpp                |  18 +-
 src/mlpack/core/tree/cover_tree/cover_tree.hpp     |  18 +-
 .../core/tree/cover_tree/cover_tree_impl.hpp       |  18 +-
 .../core/tree/cover_tree/dual_tree_traverser.hpp   |  18 +-
 .../tree/cover_tree/dual_tree_traverser_impl.hpp   |  18 +-
 .../core/tree/cover_tree/first_point_is_root.hpp   |  18 +-
 .../core/tree/cover_tree/single_tree_traverser.hpp |  18 +-
 .../tree/cover_tree/single_tree_traverser_impl.hpp |  18 +-
 src/mlpack/core/tree/cover_tree/traits.hpp         |  18 +-
 src/mlpack/core/tree/cover_tree/typedef.hpp        |  18 +-
 src/mlpack/core/tree/example_tree.hpp              |  18 +-
 src/mlpack/core/tree/hrectbound.hpp                |  18 +-
 src/mlpack/core/tree/hrectbound_impl.hpp           |  18 +-
 src/mlpack/core/tree/rectangle_tree.hpp            |  18 +-
 .../tree/rectangle_tree/dual_tree_traverser.hpp    |  18 +-
 .../rectangle_tree/dual_tree_traverser_impl.hpp    |  18 +-
 .../tree/rectangle_tree/hilbert_r_tree_split.hpp   |  18 +-
 .../rectangle_tree/hilbert_r_tree_split_impl.hpp   |  18 +-
 .../r_star_tree_descent_heuristic.hpp              |  18 +-
 .../r_star_tree_descent_heuristic_impl.hpp         |  18 +-
 .../core/tree/rectangle_tree/r_star_tree_split.hpp |  18 +-
 .../tree/rectangle_tree/r_star_tree_split_impl.hpp |  18 +-
 .../rectangle_tree/r_tree_descent_heuristic.hpp    |  18 +-
 .../r_tree_descent_heuristic_impl.hpp              |  18 +-
 .../core/tree/rectangle_tree/r_tree_split.hpp      |  18 +-
 .../core/tree/rectangle_tree/r_tree_split_impl.hpp |  18 +-
 .../core/tree/rectangle_tree/rectangle_tree.hpp    |  18 +-
 .../tree/rectangle_tree/rectangle_tree_impl.hpp    |  18 +-
 .../tree/rectangle_tree/single_tree_traverser.hpp  |  18 +-
 .../rectangle_tree/single_tree_traverser_impl.hpp  |  18 +-
 src/mlpack/core/tree/rectangle_tree/traits.hpp     |  18 +-
 src/mlpack/core/tree/rectangle_tree/typedef.hpp    |  18 +-
 .../core/tree/rectangle_tree/x_tree_split.hpp      |  18 +-
 .../core/tree/rectangle_tree/x_tree_split_impl.hpp |  18 +-
 src/mlpack/core/tree/statistic.hpp                 |  18 +-
 src/mlpack/core/tree/traversal_info.hpp            |  18 +-
 src/mlpack/core/tree/tree_traits.hpp               |  18 +-
 src/mlpack/core/util/arma_config_check.hpp         |  18 +-
 src/mlpack/core/util/arma_traits.hpp               |  18 +-
 src/mlpack/core/util/cli.cpp                       |  18 +-
 src/mlpack/core/util/cli.hpp                       |  18 +-
 src/mlpack/core/util/cli_deleter.cpp               |  18 +-
 src/mlpack/core/util/cli_deleter.hpp               |  18 +-
 src/mlpack/core/util/cli_impl.hpp                  |  18 +-
 src/mlpack/core/util/log.cpp                       |  18 +-
 src/mlpack/core/util/log.hpp                       |  18 +-
 src/mlpack/core/util/nulloutstream.hpp             |  18 +-
 src/mlpack/core/util/option.cpp                    |  18 +-
 src/mlpack/core/util/option.hpp                    |  18 +-
 src/mlpack/core/util/option_impl.hpp               |  18 +-
 src/mlpack/core/util/prefixedoutstream.cpp         |  18 +-
 src/mlpack/core/util/prefixedoutstream.hpp         |  18 +-
 src/mlpack/core/util/prefixedoutstream_impl.hpp    |  18 +-
 src/mlpack/core/util/sfinae_utility.hpp            |  18 +-
 src/mlpack/core/util/string_util.cpp               |  18 +-
 src/mlpack/core/util/string_util.hpp               |  18 +-
 src/mlpack/core/util/timers.cpp                    |  18 +-
 src/mlpack/core/util/timers.hpp                    |  18 +-
 src/mlpack/core/util/version.cpp                   |  18 +-
 src/mlpack/core/util/version.hpp                   |  24 +--
 src/mlpack/methods/adaboost/adaboost.hpp           |  18 +-
 src/mlpack/methods/adaboost/adaboost_impl.hpp      |  18 +-
 src/mlpack/methods/adaboost/adaboost_main.cpp      |  18 +-
 src/mlpack/methods/amf/amf.hpp                     |  18 +-
 src/mlpack/methods/amf/amf_impl.hpp                |  18 +-
 src/mlpack/methods/amf/init_rules/average_init.hpp |  22 +-
 .../methods/amf/init_rules/random_acol_init.hpp    |  20 +-
 src/mlpack/methods/amf/init_rules/random_init.hpp  |  22 +-
 .../complete_incremental_termination.hpp           |  18 +-
 .../incomplete_incremental_termination.hpp         |  18 +-
 .../max_iteration_termination.hpp                  |  18 +-
 .../simple_residue_termination.hpp                 |  18 +-
 .../simple_tolerance_termination.hpp               |  20 +-
 .../validation_RMSE_termination.hpp                |  20 +-
 src/mlpack/methods/amf/update_rules/nmf_als.hpp    |  18 +-
 .../methods/amf/update_rules/nmf_mult_dist.hpp     |  18 +-
 .../methods/amf/update_rules/nmf_mult_div.hpp      |  18 +-
 .../amf/update_rules/svd_batch_learning.hpp        |  18 +-
 .../svd_complete_incremental_learning.hpp          |  18 +-
 .../svd_incomplete_incremental_learning.hpp        |  18 +-
 src/mlpack/methods/cf/cf.cpp                       |  18 +-
 src/mlpack/methods/cf/cf.hpp                       |  18 +-
 src/mlpack/methods/cf/cf_impl.hpp                  |  18 +-
 src/mlpack/methods/cf/cf_main.cpp                  |  18 +-
 src/mlpack/methods/cf/svd_wrapper.hpp              |  18 +-
 src/mlpack/methods/cf/svd_wrapper_impl.hpp         |  18 +-
 .../methods/decision_stump/decision_stump.hpp      |  18 +-
 .../methods/decision_stump/decision_stump_impl.hpp |  21 +-
 .../methods/decision_stump/decision_stump_main.cpp |  18 +-
 src/mlpack/methods/det/det_main.cpp                |  18 +-
 src/mlpack/methods/det/dt_utils.cpp                |  18 +-
 src/mlpack/methods/det/dt_utils.hpp                |  18 +-
 src/mlpack/methods/det/dtree.cpp                   |  18 +-
 src/mlpack/methods/det/dtree.hpp                   |  18 +-
 src/mlpack/methods/emst/dtb.hpp                    |  18 +-
 src/mlpack/methods/emst/dtb_impl.hpp               |  18 +-
 src/mlpack/methods/emst/dtb_rules.hpp              |  18 +-
 src/mlpack/methods/emst/dtb_rules_impl.hpp         |  18 +-
 src/mlpack/methods/emst/dtb_stat.hpp               |  18 +-
 src/mlpack/methods/emst/edge_pair.hpp              |  18 +-
 src/mlpack/methods/emst/emst_main.cpp              |  18 +-
 src/mlpack/methods/emst/union_find.hpp             |  18 +-
 src/mlpack/methods/fastmks/fastmks.hpp             |  18 +-
 src/mlpack/methods/fastmks/fastmks_impl.hpp        |  18 +-
 src/mlpack/methods/fastmks/fastmks_main.cpp        |  18 +-
 src/mlpack/methods/fastmks/fastmks_model.cpp       |  18 +-
 src/mlpack/methods/fastmks/fastmks_model.hpp       |  18 +-
 src/mlpack/methods/fastmks/fastmks_model_impl.hpp  |  18 +-
 src/mlpack/methods/fastmks/fastmks_rules.hpp       |  18 +-
 src/mlpack/methods/fastmks/fastmks_rules_impl.hpp  |  18 +-
 src/mlpack/methods/fastmks/fastmks_stat.hpp        |  18 +-
 src/mlpack/methods/gmm/diagonal_constraint.hpp     |  18 +-
 .../methods/gmm/eigenvalue_ratio_constraint.hpp    |  18 +-
 src/mlpack/methods/gmm/em_fit.hpp                  |  18 +-
 src/mlpack/methods/gmm/em_fit_impl.hpp             |  18 +-
 src/mlpack/methods/gmm/gmm.cpp                     |  18 +-
 src/mlpack/methods/gmm/gmm.hpp                     |  18 +-
 src/mlpack/methods/gmm/gmm_generate_main.cpp       |  18 +-
 src/mlpack/methods/gmm/gmm_impl.hpp                |  18 +-
 src/mlpack/methods/gmm/gmm_probability_main.cpp    |  18 +-
 src/mlpack/methods/gmm/gmm_train_main.cpp          |  18 +-
 src/mlpack/methods/gmm/no_constraint.hpp           |  18 +-
 .../methods/gmm/positive_definite_constraint.hpp   |  86 +++-----
 src/mlpack/methods/hmm/hmm.hpp                     |  18 +-
 src/mlpack/methods/hmm/hmm_generate_main.cpp       |  18 +-
 src/mlpack/methods/hmm/hmm_impl.hpp                |  18 +-
 src/mlpack/methods/hmm/hmm_loglik_main.cpp         |  18 +-
 src/mlpack/methods/hmm/hmm_regression.hpp          |  18 +-
 src/mlpack/methods/hmm/hmm_regression_impl.hpp     |  18 +-
 src/mlpack/methods/hmm/hmm_train_main.cpp          |  18 +-
 src/mlpack/methods/hmm/hmm_util.hpp                |  18 +-
 src/mlpack/methods/hmm/hmm_util_impl.hpp           |  18 +-
 src/mlpack/methods/hmm/hmm_viterbi_main.cpp        |  18 +-
 .../hoeffding_trees/binary_numeric_split.hpp       |  18 +-
 .../hoeffding_trees/binary_numeric_split_impl.hpp  |  18 +-
 .../hoeffding_trees/binary_numeric_split_info.hpp  |  18 +-
 .../hoeffding_trees/categorical_split_info.hpp     |  18 +-
 .../methods/hoeffding_trees/gini_impurity.hpp      |  18 +-
 .../hoeffding_categorical_split.hpp                |  18 +-
 .../hoeffding_categorical_split_impl.hpp           |  18 +-
 .../hoeffding_trees/hoeffding_numeric_split.hpp    |  18 +-
 .../hoeffding_numeric_split_impl.hpp               |  18 +-
 .../methods/hoeffding_trees/hoeffding_tree.hpp     |  38 ++--
 .../hoeffding_trees/hoeffding_tree_impl.hpp        | 110 ++++++++--
 .../hoeffding_trees/hoeffding_tree_main.cpp        |  20 +-
 .../methods/hoeffding_trees/information_gain.hpp   |  18 +-
 .../methods/hoeffding_trees/numeric_split_info.hpp |  18 +-
 src/mlpack/methods/hoeffding_trees/typedef.hpp     |  18 +-
 src/mlpack/methods/kernel_pca/kernel_pca.hpp       |  18 +-
 src/mlpack/methods/kernel_pca/kernel_pca_impl.hpp  |  18 +-
 src/mlpack/methods/kernel_pca/kernel_pca_main.cpp  |  18 +-
 .../kernel_pca/kernel_rules/naive_method.hpp       |  18 +-
 .../kernel_pca/kernel_rules/nystroem_method.hpp    |  18 +-
 src/mlpack/methods/kmeans/allow_empty_clusters.hpp |  18 +-
 src/mlpack/methods/kmeans/dual_tree_kmeans.hpp     |  18 +-
 .../methods/kmeans/dual_tree_kmeans_impl.hpp       |  18 +-
 .../methods/kmeans/dual_tree_kmeans_rules.hpp      |  18 +-
 .../methods/kmeans/dual_tree_kmeans_rules_impl.hpp |  18 +-
 .../methods/kmeans/dual_tree_kmeans_statistic.hpp  |  18 +-
 src/mlpack/methods/kmeans/elkan_kmeans.hpp         |  18 +-
 src/mlpack/methods/kmeans/elkan_kmeans_impl.hpp    |  18 +-
 src/mlpack/methods/kmeans/hamerly_kmeans.hpp       |  18 +-
 src/mlpack/methods/kmeans/hamerly_kmeans_impl.hpp  |  18 +-
 src/mlpack/methods/kmeans/kmeans.hpp               |  18 +-
 src/mlpack/methods/kmeans/kmeans_impl.hpp          |  18 +-
 src/mlpack/methods/kmeans/kmeans_main.cpp          |  18 +-
 .../methods/kmeans/max_variance_new_cluster.hpp    |  18 +-
 .../kmeans/max_variance_new_cluster_impl.hpp       |  23 +--
 src/mlpack/methods/kmeans/naive_kmeans.hpp         |  18 +-
 src/mlpack/methods/kmeans/naive_kmeans_impl.hpp    |  18 +-
 src/mlpack/methods/kmeans/pelleg_moore_kmeans.hpp  |  18 +-
 .../methods/kmeans/pelleg_moore_kmeans_impl.hpp    |  18 +-
 .../methods/kmeans/pelleg_moore_kmeans_rules.hpp   |  18 +-
 .../kmeans/pelleg_moore_kmeans_rules_impl.hpp      |  18 +-
 .../kmeans/pelleg_moore_kmeans_statistic.hpp       |  18 +-
 src/mlpack/methods/kmeans/random_partition.hpp     |  18 +-
 src/mlpack/methods/kmeans/refined_start.hpp        |  18 +-
 src/mlpack/methods/kmeans/refined_start_impl.hpp   |  18 +-
 src/mlpack/methods/lars/lars.cpp                   |  18 +-
 src/mlpack/methods/lars/lars.hpp                   |  18 +-
 src/mlpack/methods/lars/lars_impl.hpp              |  18 +-
 src/mlpack/methods/lars/lars_main.cpp              |  18 +-
 .../linear_regression/linear_regression.cpp        |  18 +-
 .../linear_regression/linear_regression.hpp        |  18 +-
 .../linear_regression/linear_regression_main.cpp   |  18 +-
 src/mlpack/methods/local_coordinate_coding/lcc.cpp |  18 +-
 src/mlpack/methods/local_coordinate_coding/lcc.hpp |  18 +-
 .../methods/local_coordinate_coding/lcc_impl.hpp   |  18 +-
 .../methods/local_coordinate_coding/lcc_main.cpp   |  18 +-
 .../logistic_regression/logistic_regression.hpp    |  18 +-
 .../logistic_regression_function.hpp               |  18 +-
 .../logistic_regression_function_impl.hpp          |  18 +-
 .../logistic_regression_impl.hpp                   |  18 +-
 .../logistic_regression_main.cpp                   |  28 +--
 src/mlpack/methods/lsh/lsh_main.cpp                |  18 +-
 src/mlpack/methods/lsh/lsh_search.hpp              |  22 +-
 src/mlpack/methods/lsh/lsh_search_impl.hpp         |  18 +-
 .../matrix_completion/matrix_completion.cpp        |  18 +-
 .../matrix_completion/matrix_completion.hpp        |  18 +-
 src/mlpack/methods/mean_shift/mean_shift.hpp       |  18 +-
 src/mlpack/methods/mean_shift/mean_shift_impl.hpp  |  18 +-
 src/mlpack/methods/mean_shift/mean_shift_main.cpp  |  18 +-
 .../methods/naive_bayes/naive_bayes_classifier.hpp |  18 +-
 .../naive_bayes/naive_bayes_classifier_impl.hpp    |  18 +-
 src/mlpack/methods/naive_bayes/nbc_main.cpp        |  18 +-
 src/mlpack/methods/nca/nca.hpp                     |  18 +-
 src/mlpack/methods/nca/nca_impl.hpp                |  18 +-
 src/mlpack/methods/nca/nca_main.cpp                |  18 +-
 .../methods/nca/nca_softmax_error_function.hpp     |  18 +-
 .../nca/nca_softmax_error_function_impl.hpp        |  18 +-
 src/mlpack/methods/neighbor_search/allkfn_main.cpp |  18 +-
 src/mlpack/methods/neighbor_search/allknn_main.cpp |  18 +-
 .../methods/neighbor_search/neighbor_search.hpp    |  18 +-
 .../neighbor_search/neighbor_search_impl.hpp       |  18 +-
 .../neighbor_search/neighbor_search_rules.hpp      |  18 +-
 .../neighbor_search/neighbor_search_rules_impl.hpp |  18 +-
 .../neighbor_search/neighbor_search_stat.hpp       |  18 +-
 src/mlpack/methods/neighbor_search/ns_model.hpp    |  18 +-
 .../methods/neighbor_search/ns_model_impl.hpp      |  18 +-
 .../methods/neighbor_search/ns_traversal_info.hpp  |  18 +-
 .../sort_policies/furthest_neighbor_sort.cpp       |  18 +-
 .../sort_policies/furthest_neighbor_sort.hpp       |  18 +-
 .../sort_policies/furthest_neighbor_sort_impl.hpp  |  18 +-
 .../sort_policies/nearest_neighbor_sort.cpp        |  18 +-
 .../sort_policies/nearest_neighbor_sort.hpp        |  18 +-
 .../sort_policies/nearest_neighbor_sort_impl.hpp   |  18 +-
 src/mlpack/methods/neighbor_search/typedef.hpp     |  18 +-
 src/mlpack/methods/neighbor_search/unmap.cpp       |  18 +-
 src/mlpack/methods/neighbor_search/unmap.hpp       |  18 +-
 src/mlpack/methods/nmf/nmf_main.cpp                |  18 +-
 .../methods/nystroem_method/kmeans_selection.hpp   |  18 +-
 .../methods/nystroem_method/nystroem_method.hpp    |  18 +-
 .../nystroem_method/nystroem_method_impl.hpp       |  18 +-
 .../methods/nystroem_method/ordered_selection.hpp  |  18 +-
 .../methods/nystroem_method/random_selection.hpp   |  18 +-
 src/mlpack/methods/pca/pca.cpp                     |  18 +-
 src/mlpack/methods/pca/pca.hpp                     |  18 +-
 src/mlpack/methods/pca/pca_main.cpp                |  18 +-
 .../initialization_methods/random_init.hpp         |  18 +-
 .../initialization_methods/zero_init.hpp           |  18 +-
 .../learning_policies/simple_weight_update.hpp     |  18 +-
 src/mlpack/methods/perceptron/perceptron.hpp       |  18 +-
 src/mlpack/methods/perceptron/perceptron_impl.hpp  |  18 +-
 src/mlpack/methods/perceptron/perceptron_main.cpp  |  18 +-
 src/mlpack/methods/quic_svd/quic_svd.hpp           |  18 +-
 src/mlpack/methods/quic_svd/quic_svd_impl.hpp      |  18 +-
 src/mlpack/methods/radical/radical.cpp             |  18 +-
 src/mlpack/methods/radical/radical.hpp             |  18 +-
 src/mlpack/methods/radical/radical_main.cpp        |  18 +-
 src/mlpack/methods/range_search/range_search.hpp   |  18 +-
 .../methods/range_search/range_search_impl.hpp     |  18 +-
 .../methods/range_search/range_search_main.cpp     |  18 +-
 .../methods/range_search/range_search_rules.hpp    |  18 +-
 .../range_search/range_search_rules_impl.hpp       |  18 +-
 .../methods/range_search/range_search_stat.hpp     |  18 +-
 src/mlpack/methods/range_search/rs_model.cpp       |  18 +-
 src/mlpack/methods/range_search/rs_model.hpp       |  18 +-
 src/mlpack/methods/range_search/rs_model_impl.hpp  |  18 +-
 src/mlpack/methods/rann/allkrann_main.cpp          |  18 +-
 src/mlpack/methods/rann/ra_model.hpp               |  18 +-
 src/mlpack/methods/rann/ra_model_impl.hpp          |  18 +-
 src/mlpack/methods/rann/ra_query_stat.hpp          |  18 +-
 src/mlpack/methods/rann/ra_search.hpp              |  18 +-
 src/mlpack/methods/rann/ra_search_impl.hpp         |  18 +-
 src/mlpack/methods/rann/ra_search_rules.hpp        |  18 +-
 src/mlpack/methods/rann/ra_search_rules_impl.hpp   |  18 +-
 src/mlpack/methods/rann/ra_typedef.hpp             |  18 +-
 src/mlpack/methods/rann/ra_util.cpp                |  18 +-
 src/mlpack/methods/rann/ra_util.hpp                |  18 +-
 .../methods/regularized_svd/regularized_svd.hpp    |  18 +-
 .../regularized_svd/regularized_svd_function.cpp   |  18 +-
 .../regularized_svd/regularized_svd_function.hpp   |  18 +-
 .../regularized_svd/regularized_svd_impl.hpp       |  18 +-
 .../softmax_regression/softmax_regression.hpp      |  18 +-
 .../softmax_regression_function.cpp                |  20 +-
 .../softmax_regression_function.hpp                |  18 +-
 .../softmax_regression/softmax_regression_impl.hpp |  18 +-
 .../softmax_regression/softmax_regression_main.cpp |  18 +-
 .../methods/sparse_autoencoder/maximal_inputs.cpp  |  18 +-
 .../methods/sparse_autoencoder/maximal_inputs.hpp  |  18 +-
 .../sparse_autoencoder/sparse_autoencoder.hpp      |  18 +-
 .../sparse_autoencoder_function.cpp                |  18 +-
 .../sparse_autoencoder_function.hpp                |  20 +-
 .../sparse_autoencoder/sparse_autoencoder_impl.hpp |  18 +-
 .../data_dependent_random_initializer.hpp          |  18 +-
 .../methods/sparse_coding/nothing_initializer.hpp  |  18 +-
 .../methods/sparse_coding/random_initializer.hpp   |  18 +-
 src/mlpack/methods/sparse_coding/sparse_coding.cpp |  18 +-
 src/mlpack/methods/sparse_coding/sparse_coding.hpp |  18 +-
 .../methods/sparse_coding/sparse_coding_impl.hpp   |  18 +-
 .../methods/sparse_coding/sparse_coding_main.cpp   |  18 +-
 src/mlpack/prereqs.hpp                             |  18 +-
 src/mlpack/tests/adaboost_test.cpp                 |  18 +-
 src/mlpack/tests/allkfn_test.cpp                   |  18 +-
 src/mlpack/tests/allknn_test.cpp                   |  20 +-
 src/mlpack/tests/allkrann_search_test.cpp          |  18 +-
 src/mlpack/tests/armadillo_svd_test.cpp            |  18 +-
 src/mlpack/tests/aug_lagrangian_test.cpp           |  18 +-
 src/mlpack/tests/cf_test.cpp                       |  18 +-
 src/mlpack/tests/cli_test.cpp                      |  18 +-
 src/mlpack/tests/cosine_tree_test.cpp              |  20 +-
 src/mlpack/tests/decision_stump_test.cpp           |  18 +-
 src/mlpack/tests/det_test.cpp                      |  18 +-
 src/mlpack/tests/distribution_test.cpp             |  18 +-
 src/mlpack/tests/emst_test.cpp                     |  18 +-
 src/mlpack/tests/fastmks_test.cpp                  |  18 +-
 src/mlpack/tests/gmm_test.cpp                      |  24 +--
 src/mlpack/tests/hmm_test.cpp                      |  30 +--
 src/mlpack/tests/hoeffding_tree_test.cpp           | 187 +++++++++++++++--
 src/mlpack/tests/kernel_pca_test.cpp               |  18 +-
 src/mlpack/tests/kernel_test.cpp                   |  18 +-
 src/mlpack/tests/kernel_traits_test.cpp            |  18 +-
 src/mlpack/tests/kmeans_test.cpp                   |  18 +-
 src/mlpack/tests/lars_test.cpp                     |  18 +-
 src/mlpack/tests/layer_traits_test.cpp             |  18 +-
 src/mlpack/tests/lbfgs_test.cpp                    |  18 +-
 src/mlpack/tests/lin_alg_test.cpp                  |  18 +-
 src/mlpack/tests/linear_regression_test.cpp        |  18 +-
 src/mlpack/tests/load_save_test.cpp                |  18 +-
 src/mlpack/tests/local_coordinate_coding_test.cpp  |  18 +-
 src/mlpack/tests/log_test.cpp                      |  18 +-
 src/mlpack/tests/logistic_regression_test.cpp      |  18 +-
 src/mlpack/tests/lrsdp_test.cpp                    |  18 +-
 src/mlpack/tests/lsh_test.cpp                      |  18 +-
 src/mlpack/tests/math_test.cpp                     |  18 +-
 src/mlpack/tests/matrix_completion_test.cpp        |  18 +-
 src/mlpack/tests/maximal_inputs_test.cpp           |  18 +-
 src/mlpack/tests/mean_shift_test.cpp               |  18 +-
 src/mlpack/tests/metric_test.cpp                   |  18 +-
 src/mlpack/tests/mlpack_test.cpp                   |  18 +-
 src/mlpack/tests/nbc_test.cpp                      |  18 +-
 src/mlpack/tests/nca_test.cpp                      |  18 +-
 src/mlpack/tests/nmf_test.cpp                      |  18 +-
 src/mlpack/tests/nystroem_method_test.cpp          |  18 +-
 src/mlpack/tests/old_boost_test_definitions.hpp    |  18 +-
 src/mlpack/tests/pca_test.cpp                      |  18 +-
 src/mlpack/tests/perceptron_test.cpp               |  18 +-
 src/mlpack/tests/quic_svd_test.cpp                 |  18 +-
 src/mlpack/tests/radical_test.cpp                  |  18 +-
 src/mlpack/tests/range_search_test.cpp             |  18 +-
 src/mlpack/tests/rectangle_tree_test.cpp           |  18 +-
 src/mlpack/tests/regularized_svd_test.cpp          |  18 +-
 src/mlpack/tests/sa_test.cpp                       |  18 +-
 src/mlpack/tests/sdp_primal_dual_test.cpp          |  18 +-
 src/mlpack/tests/serialization.cpp                 |  18 +-
 src/mlpack/tests/serialization.hpp                 |  18 +-
 src/mlpack/tests/serialization_test.cpp            |  18 +-
 src/mlpack/tests/sgd_test.cpp                      |  18 +-
 src/mlpack/tests/softmax_regression_test.cpp       |  18 +-
 src/mlpack/tests/sort_policy_test.cpp              |  18 +-
 src/mlpack/tests/sparse_autoencoder_test.cpp       |  18 +-
 src/mlpack/tests/sparse_coding_test.cpp            |  20 +-
 src/mlpack/tests/svd_batch_test.cpp                |  18 +-
 src/mlpack/tests/svd_incremental_test.cpp          |  18 +-
 src/mlpack/tests/termination_policy_test.cpp       |  18 +-
 src/mlpack/tests/tree_test.cpp                     |  18 +-
 src/mlpack/tests/tree_traits_test.cpp              |  18 +-
 src/mlpack/tests/union_find_test.cpp               |  18 +-
 479 files changed, 2932 insertions(+), 6448 deletions(-)
 delete mode 100644 debian/patches/0002-spelling.patch

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