[adios] 01/18: Merge tag 'upstream/1.10.0' into debian/master
Alastair McKinstry
mckinstry at moszumanska.debian.org
Fri Oct 28 11:18:25 UTC 2016
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a commit to tag debian/1.10.1-1
in repository adios.
commit 85738b985669ab6b782d1079351f6227e8893b44
Merge: 765c054 73d6ad4
Author: Alastair McKinstry <mckinstry at debian.org>
Date: Mon Oct 3 15:07:25 2016 +0100
Merge tag 'upstream/1.10.0' into debian/master
CMakeLists.txt | 306 +-
COPYING | 9 +
Makefile.am | 67 +-
Makefile.in | 539 +-
NEWS | 16 +
README => README.md | 0
aclocal.m4 | 984 +-
adios_config.flags.cmake | 30 +-
adios_config.flags.in | 39 -
adios_config.flags.makesrc.in | 45 +
adios_config.in => adios_config.makesrc.in | 51 +-
cmake_init | 117 +-
config.h.cmake | 7 +
config.h.in | 52 +-
config/ac_alacrity.m4 | 2 +-
config/ac_fastbit.m4 | 2 +-
config/ac_mxml.m4 | 8 +-
config/ac_nc4par.m4 | 5 +
config/ac_ncsu_timer.m4 | 61 -
config/ac_phdf5.m4 | 5 +
config/ac_ridcompress.m4 | 73 -
config/acx_mpi.m4 | 217 +-
config/compile | 232 +-
config/depcomp | 531 +-
config/libtool.m4 | 4187 +-
config/ltmain.sh | 8139 ++-
config/ltoptions.m4 | 147 +-
config/ltsugar.m4 | 7 +-
config/ltversion.m4 | 14 +-
config/lt~obsolete.m4 | 17 +-
config/missing | 461 +-
config/test-driver | 127 +
configure | 29515 ++++------
configure.ac | 330 +-
examples/C/Makefile.in | 315 +-
examples/C/arrays/Makefile.am | 2 +-
examples/C/arrays/Makefile.in | 239 +-
examples/C/arrays/arrays.xml | 2 +-
examples/C/attributes/Makefile.am | 2 +-
examples/C/attributes/Makefile.in | 249 +-
examples/C/attributes/attributes.xml | 2 +-
examples/C/attributes/attributes_read.c | 79 +-
examples/C/flexpath_arrays/Makefile.in | 315 +-
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.../C/flexpath_arrays/process_select/Makefile.in | 241 +-
.../C/flexpath_arrays/process_select/arrays.xml | 2 +-
examples/C/global-array-time/Makefile.am | 4 +-
examples/C/global-array-time/Makefile.in | 270 +-
examples/C/global-array-time/adios_globaltime.xml | 2 +-
.../C/global-array-time/adios_globaltime_no_xml.c | 47 +-
.../C/global-array-time/adios_read_globaltime.c | 5 +-
.../adios_read_globaltime_streaming.c | 4 +-
examples/C/global-array/Makefile.am | 12 +-
examples/C/global-array/Makefile.in | 357 +-
examples/C/global-array/adios_global.xml | 2 +-
.../global-array/adios_global_aggregate_by_color.c | 2 +-
examples/C/global-array/adios_global_no_xml.c | 27 +-
examples/C/global-array/adios_read_chunk.c | 4 +-
examples/C/global-array/adios_read_global.c | 5 +-
examples/C/global-array/adios_read_global_no_xml.c | 4 +-
examples/C/global-array/adios_read_writeblock.c | 6 +-
examples/C/global-array/no_xml_write_byid.c | 177 +-
examples/C/global-array/read_no_xml_write_byid.c | 4 +-
examples/C/icee_arrays/Makefile.in | 315 +-
examples/C/icee_arrays/array/Makefile.am | 7 +-
examples/C/icee_arrays/array/Makefile.in | 244 +-
examples/C/icee_arrays/array/adios_read.c | 5 +-
examples/C/icee_arrays/array/adios_write.c | 5 +-
examples/C/manual/Makefile.am | 8 +-
examples/C/manual/Makefile.in | 269 +-
examples/C/manual/config.xml | 2 +-
examples/C/query/Makefile.am | 7 +-
examples/C/query/Makefile.in | 275 +-
examples/C/query/README_table.txt | 12 +-
examples/C/query/query_table.c | 129 +-
examples/C/query/query_vars.c | 202 +-
examples/C/query/write_table.c | 45 +-
examples/C/query/write_vars.c | 51 +-
examples/C/read_all/Makefile.in | 266 +-
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examples/C/read_all/read_all_v1.c | 17 +-
examples/C/scalars/Makefile.am | 4 +-
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examples/C/scalars/scalars_read.c | 4 +-
examples/C/schema/Makefile.am | 18 +-
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examples/C/schema/uniform2d.xml | 2 +-
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examples/C/stat/Makefile.in | 239 +-
examples/C/stat/stat.xml | 2 +-
examples/C/transforms/Makefile.am | 12 +-
examples/C/transforms/Makefile.in | 278 +-
examples/C/transforms/adios_global.xml | 2 +-
examples/C/transforms/adios_read_points.c | 2 +-
examples/C/transforms/adios_read_subv.c | 2 +-
examples/C/transforms/adios_read_wb_subpg.c | 2 +-
examples/Fortran/Makefile.in | 315 +-
examples/Fortran/arrays/Makefile.am | 2 +-
examples/Fortran/arrays/Makefile.in | 233 +-
examples/Fortran/arrays/arrays.xml | 2 +-
examples/Fortran/global-array-time/Makefile.am | 2 +-
examples/Fortran/global-array-time/Makefile.in | 231 +-
.../Fortran/global-array-time/adios_globaltime.xml | 2 +-
examples/Fortran/global-array/Makefile.am | 6 +-
examples/Fortran/global-array/Makefile.in | 254 +-
examples/Fortran/global-array/adios_global.xml | 2 +-
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examples/Fortran/scalars/Makefile.am | 2 +-
examples/Fortran/scalars/Makefile.in | 233 +-
examples/Fortran/scalars/scalars.xml | 2 +-
examples/Fortran/schema/Makefile.am | 10 +-
examples/Fortran/schema/Makefile.in | 299 +-
examples/Fortran/schema/rectilinear2d_noxml.F90 | 6 +-
examples/Fortran/schema/structured2d_noxml.F90 | 4 +-
examples/Fortran/schema/tri2d_noxml.F90 | 6 +-
examples/Fortran/schema/tri2d_noxml_seperate.F90 | 6 +-
examples/Fortran/schema/uniform2d_noxml.F90 | 6 +-
examples/Makefile.in | 315 +-
examples/coupling/coupling_reader_2D.xml | 2 +-
examples/coupling/coupling_writer_2D.xml | 2 +-
examples/skel/genarray3d/genarray3d.xml | 2 +-
examples/skel/geos5/geos5.xml | 2 +-
examples/skel/grapes/grapes.xml | 2 +-
examples/skel/gts/gts.xml | 2 +-
examples/skel/picongpu/picongpu.xml | 2 +-
examples/skel/picongpu/picongpu_skel.xml | 2 +-
examples/skel/s3d/s3d.xml | 2 +-
examples/staging/stage_write/genarray_stream.xml | 2 +-
examples/staging/stage_write/stage_write.c | 2 +-
.../stage_write_varyingsize/genarray_varying | Bin 5254828 -> 0 bytes
.../stage_write_varyingsize/genarray_varying.xml | 2 +-
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.../staging/stage_write_varyingsize/stage_write.c | 2 +-
runconf | 560 +-
scripts/FindADIOS.cmake | 6 +-
src/CMakeLists.txt | 72 +-
src/Makefile.am | 966 +-
src/Makefile.in | 10188 ++--
src/core/a2sel.c | 262 +
src/core/a2sel.h | 33 +
src/core/adios.c | 148 +-
src/core/adios_bp_v1.c | 44 +-
src/core/adios_clock.c | 87 +
src/core/adios_clock.h | 28 +
src/core/adios_copyspec.c | 4 +-
src/core/adios_infocache.c | 2 +-
src/core/adios_internals.c | 853 +-
src/core/adios_internals.h | 68 +-
src/core/adios_internals_mxml.c | 172 +-
src/core/adios_internals_mxml.h | 5 -
src/core/adios_read.c | 16 +-
src/core/adios_read_ext.c | 19 +-
src/core/adios_read_hooks.h | 2 +-
src/core/adios_read_v1.c | 12 +-
src/core/adios_selection_util.c | 28 +-
src/core/adios_selection_util.h | 3 +-
src/core/adios_subvolume.c | 6 +-
src/core/adios_timing.c | 36 +-
src/core/adios_timing.h | 4 +-
src/core/adios_transport_hooks.c | 7 +-
src/core/adios_transport_hooks.h | 43 +-
src/core/adiosf.c | 21 +-
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src/core/bp_utils.c | 104 +-
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src/core/buffer.c | 143 +-
src/core/buffer.h | 24 +-
src/core/common_adios.c | 692 +-
src/core/common_adios.h | 2 +-
src/core/common_read.c | 331 +-
src/core/common_read.h | 8 -
src/core/flexpath.h | 34 +-
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src/core/strutil.c | 356 +
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tests/C/query/alacrity/Makefile.am | 33 +-
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tests/C/query/alacrity/adios_alac_query.c | 47 +-
tests/C/query/alacrity/adios_build_alac_index.c | 74 +-
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tests/C/query/common/Makefile.in | 285 +-
tests/C/query/common/adios_query_test.c | 171 +-
tests/C/query/common/adios_query_xml_parse.c | 122 +-
.../query/common/compute_expected_query_results.c | 28 +-
tests/C/query/fastbit/CMakeLists.txt | 5 +-
tests/C/query/fastbit/Makefile.am | 15 +-
tests/C/query/fastbit/Makefile.in | 273 +-
tests/C/query/fastbit/fastbit_tests.c | 307 +-
tests/C/query/fastbit/query.xml | 68 +
.../DS-1D/{query0.xml => DS-1D.query0.xml} | 0
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.../DS-2D/{query0.xml => DS-2D.query0.xml} | 0
.../DS-2D/{query1.xml => DS-2D.query1.xml} | 0
.../DS-3D/{query-wb0.xml => DS-3D.query-wb0.xml} | 0
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tests/CMakeLists.txt | 2 +
tests/Fortran/Makefile.am | 2 +-
tests/Fortran/Makefile.in | 230 +-
tests/Fortran/adios_test_f.F90 | 2 +-
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tests/Makefile.am | 15 +-
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tests/bp_read/bp_read_c.c | 10 +-
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tests/suite/programs/CMakeLists.txt | 12 +-
tests/suite/programs/Makefile.am | 75 +-
tests/suite/programs/Makefile.in | 1252 +-
tests/suite/programs/adios_amr_write.xml | 2 +-
tests/suite/programs/adios_amr_write_2vars.xml | 2 +-
tests/suite/programs/adios_transforms.xml | 2 +-
tests/suite/programs/adios_transforms_read_write.c | 2 +-
tests/suite/programs/big_file.c | 2 +-
tests/suite/programs/blocks.c | 3 +-
tests/suite/programs/build_standard_dataset.c | 17 +-
tests/suite/programs/connect_to_space_subset.c | 2 +-
tests/suite/programs/examples/Makefile.in | 315 +-
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.../global_array/global_array_read_byid_noxml_C.c | 2 +-
.../global_array/global_array_read_noxml_C.c | 2 +-
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tests/suite/programs/local_array_time.c | 4 +
tests/suite/programs/local_array_time.xml | 5 +-
tests/suite/programs/many_vars.c | 2 +-
tests/suite/programs/path_test.xml | 2 +-
tests/suite/programs/posix_method.xml | 2 +-
tests/suite/programs/reuse_dim.c | 2 +-
tests/suite/programs/selections.c | 2 +-
tests/suite/programs/set_path.xml | 2 +-
tests/suite/programs/set_path_var.xml | 2 +-
tests/suite/programs/steps_write.c | 2 +-
tests/suite/programs/transforms.xml | 2 +-
tests/suite/programs/two_groups.c | 16 +-
tests/suite/programs/two_groups.xml | 2 +-
tests/suite/programs/write_alternate.c | 1 +
tests/suite/programs/write_alternate.xml | 2 +-
tests/suite/programs/write_read.xml | 2 +-
tests/suite/tests/19_query.sh | 39 +-
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tests/test_src/CMakeLists.txt | 44 +
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tests/test_src/Makefile.in | 1649 +
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.../{suite/programs => test_src}/group_free_test.c | 2 +-
tests/{suite/programs => test_src}/hashtest.c | 0
tests/test_src/points_1DtoND.c | 422 +
tests/test_src/query_minmax.c | 379 +
tests/test_src/read_points_2d.c | 694 +
tests/test_src/read_points_3d.c | 774 +
tests/test_src/selection_api.F90 | 218 +
tests/test_src/test_strutil.c | 141 +
tests/test_src/text_to_pairstruct.c | 127 +
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tests/test_src/trim_spaces.c | 62 +
utils/CMakeLists.txt | 2 +-
utils/Makefile.am | 14 +-
utils/Makefile.in | 336 +-
utils/adios_lint/CMakeLists.txt | 1 +
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utils/adios_list_methods/CMakeLists.txt | 28 +
utils/adios_list_methods/Makefile.am | 44 +
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utils/bp2ascii/Makefile.am | 6 +-
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utils/bpdiff/utils.h | 1 +
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utils/bpmeta/bpmeta.c | 53 +-
utils/bprecover/Makefile.am | 6 +-
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utils/bprecover/bprecover.c | 89 +-
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utils/bpsplit/bpsplit.c | 39 +-
utils/fastbit/Makefile.am | 10 +-
utils/fastbit/Makefile.in | 279 +-
utils/fastbit/adios_index_fastbit.c | 38 +-
utils/gpp/CMakeLists.txt | 6 +-
utils/gpp/Makefile.am | 2 +-
utils/gpp/Makefile.in | 167 +-
utils/gpp/ad_config.py | 20 +-
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utils/skel/Makefile.am | 7 +-
utils/skel/Makefile.in | 361 +-
utils/skel/etc/Makefile.in | 157 +-
utils/skel/etc/templates/xml.tmpl | 2 +-
utils/skel/src/Makefile.in | 300 +-
utils/skeldump/Makefile.in | 272 +-
utils/skeldump/skeldump.c | 90 +-
wrappers/java/test/test1.sh | 2 +-
wrappers/matlab/posix_method.bp | Bin 1257 -> 0 bytes
.../matlab/posix_method.bp.dir/posix_method.bp.0 | Bin 10373 -> 0 bytes
wrappers/matlab/two_groups19.bp | 1 -
wrappers/matlab/xgc.diagnosis.bp | 1 -
wrappers/numpy/DEVELOPER | 17 +
wrappers/numpy/MANIFEST.in | 3 +
wrappers/numpy/_hl/__init__.py | 0
wrappers/numpy/_hl/selections.py | 309 +
wrappers/numpy/adios.cpp | 56076 ++++++++++++-------
wrappers/numpy/adios.pyx | 1315 +-
wrappers/numpy/adios_mpi.cpp | 46494 +++++++++------
wrappers/numpy/adios_mpi.pyx | 1315 +-
wrappers/numpy/adios_mpi2serial.sed | 3 +
wrappers/numpy/doc/source/quick.rst | 63 +-
wrappers/numpy/example/staging/README | 4 +
wrappers/numpy/example/staging/adios_read_mpi.py | 44 +
wrappers/numpy/example/staging/adios_write_mpi.py | 53 +
wrappers/numpy/example/staging/job.pbs | 58 +
wrappers/numpy/example/utils/bpls.py | 8 +-
wrappers/numpy/mpi-compat.h | 14 +
wrappers/numpy/setup.py | 41 +-
wrappers/numpy/setup_mpi.py | 142 +-
wrappers/numpy/src/__init__.py | 2 +
wrappers/numpy/src_mpi/__init__.py | 2 +
wrappers/numpy/test/README | 8 +
wrappers/numpy/test/__init__.py | 0
wrappers/numpy/test/test_adios_group_unittest.py | 148 +
...s_unittest.py => test_adios_prefix_unittest.py} | 70 +-
.../numpy/test/test_adios_timestep_unittest.py | 63 +-
wrappers/numpy/test/test_adios_unittest.py | 105 +-
wrappers/numpy/test/test_adios_write_unittest.py | 8 +-
wrappers/numpy/test/test_adios_writer_unittest.py | 95 +-
wrappers/numpy/test/test_selections.py | 90 +
wrappers/numpy/tests/config.xml | 2 +-
wrappers/numpy/tests/config_mpi.xml | 2 +-
wrappers/numpy/tests/test_adios.py | 20 +-
wrappers/numpy/tests/test_adios_attribute.py | 62 +
wrappers/numpy/tests/test_adios_matplot.py | 19 +-
wrappers/numpy/tests/test_adios_mpi.py | 20 +-
wrappers/numpy/tests/test_adios_mpi_writer.py | 21 +-
wrappers/numpy/tests/test_adios_timestep.py | 25 +-
wrappers/numpy/tests/test_adios_writer.py | 21 +-
wrappers/numpy/uninstal-adios-modules.sh | 34 +
649 files changed, 161645 insertions(+), 96375 deletions(-)
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