[cmor] branch debian/master updated (bc94425 -> 09ed937)

Alastair McKinstry mckinstry at moszumanska.debian.org
Wed May 3 14:22:19 UTC 2017


This is an automated email from the git hooks/post-receive script.

mckinstry pushed a change to branch debian/master
in repository cmor.

      from  bc94425   * Do not ship json-c include files; depend on libjson-c-dev. Closes: #849941 * Disable tests, segfault on some archs
      adds  8220f2e   New upstream 3.2.3
       new  0098420   Merge tag 'upstream/3.2.3' into debian/master
       new  09ed937   New upstream release

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 INSTALL                                            |     4 +-
 Lib/pywrapper.py                                   |     6 +-
 {scripts => LibCV/PrePARE}/PrePARE.py              |    76 +-
 LibCV/PrePARE/__init__.py                          |     1 +
 LibCV/__init__.py                                  |     2 +-
 LibCV/cmor_const.py                                |     1 +
 LibCV/pywrapper.py                                 |    56 +-
 Makefile.in                                        |   201 +-
 README.md                                          |     7 +-
 RELEASE-NOTES                                      |     1 +
 Src/_cmormodule.c                                  |    41 +-
 Src/_controlvocabulary.c                           |    93 +-
 Src/cmor.c                                         |   847 +-
 Src/cmor_CV.c                                      |  1167 ++-
 Src/cmor_axes.c                                    |     8 +-
 Src/cmor_grids.c                                   |   457 +-
 Src/cmor_tables.c                                  |    97 +-
 Src/cmor_variables.c                               |   113 +-
 Test/_cmor_stub.py                                 |     2 +
 Test/all_tests.py                                  |     1 +
 Test/check_results.py                              |    58 +-
 Test/cmor_speed_and_compression.py                 |   197 +-
 Test/cmor_speed_and_compression_01.py              |    86 +-
 Test/cmor_speed_and_compression_02.py              |   259 +-
 Test/cmor_speed_and_compression_03.py              |   163 +-
 Test/common_user_input.json                        |    24 +-
 ...mon_user_input.json => common_user_input2.json} |     4 +-
 ...r_input.json => common_user_inputNOBOUNDS.json} |     4 +-
 ...user_input.json => common_user_input_NOID.json} |     6 +-
 ...on_user_input.json => common_user_input_a.json} |     4 +-
 Test/common_user_input_b.json                      |    73 +
 Test/in_files.py                                   |    56 +-
 Test/jamie_hybrid_height.py                        |    59 +-
 Test/jamie_positive.py                             |    46 +-
 Test/nc2asc.py                                     |    89 +-
 Test/out_files.py                                  |   180 +-
 Test/speed_test_table_A                            |     5 +-
 Test/test_checker_works.py                         |  2723 +++--
 Test/test_chunking.py                              |    64 +
 Test/test_compression.py                           |    61 +-
 Test/test_dimensionless.f90                        |     4 +-
 Test/test_doc.py                                   |    40 +-
 Test/test_grid_stub_jamie.py                       |   143 +-
 Test/test_lon_gt_360.py                            |    54 +-
 Test/test_lon_thro_360.py                          |    64 +-
 Test/test_non_monotonic_climo_bonds_ok.py          |    62 +-
 Test/test_python_1D_var.py                         |    14 +-
 Test/test_python_2Gb_file.py                       |    81 +-
 Test/test_python_2Gb_slice.py                      |    59 +-
 Test/test_python_3hr.py                            |    37 -
 Test/test_python_CMIP6_CV_HISTORY.py               |     6 +-
 Test/test_python_CMIP6_CV_baddirectory.py          |     6 +-
 Test/test_python_CMIP6_CV_badgridgr.py             |    10 +-
 Test/test_python_CMIP6_CV_badgridlabel.py          |    13 +-
 Test/test_python_CMIP6_CV_badgridresolution.py     |    11 +-
 Test/test_python_CMIP6_CV_badgridresolution2.py    |    98 -
 Test/test_python_CMIP6_CV_badinstitution.py        |    14 +-
 Test/test_python_CMIP6_CV_badinstitutionID.json    |     2 +-
 Test/test_python_CMIP6_CV_badinstitutionID.py      |    28 +-
 .../test_python_CMIP6_CV_badinstitutionIDNotSet.py |    22 +-
 Test/test_python_CMIP6_CV_badsource.py             |    20 +-
 Test/test_python_CMIP6_CV_badsourceid.py           |    17 +-
 Test/test_python_CMIP6_CV_badsourcetype.py         |    26 +-
 .../test_python_CMIP6_CV_badsourcetypeCHEMAER.json |     9 +-
 Test/test_python_CMIP6_CV_badsourcetypeCHEMAER.py  |    28 +-
 Test/test_python_CMIP6_CV_badsourcetypeRequired.py |    29 +-
 Test/test_python_CMIP6_CV_badvariant.py            |    17 +-
 Test/test_python_CMIP6_CV_externalvariables.py     |    22 +-
 Test/test_python_CMIP6_CV_forcemultipleparent.py   |   151 +
 ...on.py => test_python_CMIP6_CV_forcenoparent.py} |    26 +-
 ...tion.py => test_python_CMIP6_CV_forceparent.py} |    35 +-
 Test/test_python_CMIP6_CV_furtherinfourl.py        |    74 +-
 Test/test_python_CMIP6_CV_fxtable.py               |    23 +-
 Test/test_python_CMIP6_CV_longrealizationindex.py  |    18 +-
 Test/test_python_CMIP6_CV_nomipera.py              |    19 +-
 ...ion.py => test_python_CMIP6_CV_parentmipera.py} |    32 +-
 ...n.py => test_python_CMIP6_CV_parentsourceid.py} |    31 +-
 ....py => test_python_CMIP6_CV_parenttimeunits.py} |    36 +-
 ... => test_python_CMIP6_CV_parentvariantlabel.py} |    32 +-
 ...=> test_python_CMIP6_CV_sub_experimentIDbad.py} |    33 +-
 ...y => test_python_CMIP6_CV_sub_experiment_id.py} |    33 +-
 ...y => test_python_CMIP6_CV_sub_experimentbad.py} |    34 +-
 ...> test_python_CMIP6_CV_sub_experimentnotset.py} |    36 +-
 Test/test_python_CMIP6_CV_trackingNoprefix.py      |    13 +-
 Test/test_python_CMIP6_CV_trackingprefix.py        |    48 +-
 Test/test_python_CMIP6_driving.py                  |    11 +-
 Test/test_python_CMIP6_experimentID.py             |    11 +-
 Test/test_python_CMIP6_projections.py              |   112 +
 Test/test_python_CMIP6_wrong_activity.py           |    11 +-
 Test/test_python_YYYMMDDHH_exp_fmt.py              |    42 +-
 Test/test_python_alastair_1.py                     |    99 +-
 Test/test_python_appending.py                      |    94 +-
 Test/test_python_bad_date.py                       |   111 +-
 Test/test_python_bentley_01.py                     |    81 +-
 Test/test_python_bounds_request.py                 |    65 +-
 Test/test_python_cfmip_site_axis_test.py           |   135 +-
 Test/test_python_clim_bounds.py                    |    70 +-
 Test/test_python_clim_bounds_02.py                 |    93 +-
 Test/test_python_clim_bounds_03.py                 |    99 +-
 Test/test_python_clim_bounds_04.py                 |    99 +-
 Test/test_python_common.py                         |   228 +-
 Test/test_python_direct_calls.py                   |   213 +-
 Test/test_python_free_wrapping_issue.py            |   131 +-
 Test/test_python_grid_and_ocn_sigma.py             |   225 +-
 Test/test_python_index_coord.py                    |    70 +-
 Test/test_python_jamie.py                          |    40 +-
 Test/test_python_jamie_10.py                       |    52 +-
 Test/test_python_jamie_11.py                       |   156 -
 Test/test_python_jamie_12.py                       |    55 +-
 Test/test_python_jamie_2.py                        |    39 +-
 Test/test_python_jamie_3.py                        |    36 +-
 Test/test_python_jamie_3hr.py                      |    58 +-
 Test/test_python_jamie_4.py                        |    36 +-
 Test/test_python_jamie_6.py                        |   247 +-
 Test/test_python_jamie_7.py                        |   101 +-
 Test/test_python_jamie_8.py                        |   101 +-
 Test/test_python_jamie_9.py                        |    54 +-
 Test/test_python_jamie_site_surface.py             |    53 +-
 Test/test_python_joerg_1.py                        |    92 +-
 Test/test_python_joerg_10.py                       |   121 +-
 Test/test_python_joerg_11.py                       |    89 +-
 Test/test_python_joerg_12.py                       |    91 +-
 Test/test_python_joerg_2.py                        |    66 +-
 Test/test_python_joerg_3.py                        |   215 +-
 Test/test_python_joerg_4.py                        |   106 +-
 Test/test_python_joerg_5.py                        |    22 +-
 Test/test_python_joerg_6.py                        |    19 +-
 Test/test_python_joerg_7.py                        |    65 +-
 Test/test_python_joerg_8.py                        |    89 +-
 Test/test_python_joerg_9.py                        |   138 +-
 Test/test_python_joerg_tim2_clim.py                |    71 +-
 Test/test_python_joerg_tim2_clim_02.py             |    57 +-
 Test/test_python_max_variables.py                  |    94 +-
 Test/test_python_max_variables_2.py                |   113 +-
 Test/test_python_memory_check.py                   |    84 +-
 Test/test_python_new_tables.py                     |    52 +-
 Test/test_python_obs4MIPs.py                       |    34 +-
 Test/test_python_open_close_cmor_multiple.py       |   120 +-
 Test/test_python_polar_stereo.py                   |    94 +-
 Test/test_python_region.py                         |    44 +-
 Test/test_python_reverted_lats.py                  |   107 +-
 .../test_python_singleton_anywhere_in_table_def.py |   137 +-
 Test/test_python_singleton_string.py               |   115 +-
 Test/test_python_stephanie_6hrPlev_minutes.py      |    68 +-
 Test/test_python_toomany_tables.py                 |   123 +
 Test/test_python_user_interface_00.py              |   162 +-
 Test/test_python_user_interface_01.py              |    99 +-
 Test/test_python_user_interface_03.py              |    93 +-
 Test/test_site_ts.py                               |    57 +-
 Test/test_sophie.f90                               |     6 +-
 Test/test_time_gap_multi_write.py                  |    84 +-
 Test/test_time_gap_single_write1.py                |    77 +-
 Test/test_time_gap_single_write2.py                |    76 +-
 TestTables/CMIP5_3hr                               |   814 --
 TestTables/CMIP5_6hrLev                            |   612 --
 TestTables/CMIP5_Amon                              |  2387 -----
 TestTables/CMIP5_Lmon                              |  1665 ---
 TestTables/CMIP5_Omon                              |  4658 ---------
 TestTables/CMIP5_cf3hr                             |  2736 -----
 TestTables/CMIP5_cfMon                             |  2756 -----
 TestTables/CMIP5_cfSites                           |  2365 -----
 TestTables/CMIP5_day                               |  1274 ---
 TestTables/CMIP5_fx                                |   665 --
 TestTables/CMIP5_grids                             |   319 -
 TestTables/CMIP6_3hr.json                          |    38 +-
 TestTables/CMIP6_6hrLev.json                       |    78 +-
 TestTables/CMIP6_6hrPlev.json                      |   214 +-
 .../{CMIP6_6hrPlevpt.json => CMIP6_6hrPlevPt.json} |   266 +-
 .../{CMIP6_aerdaily.json => CMIP6_AERday.json}     |    84 +-
 .../{CMIP6_aerfixed.json => CMIP6_AERfx.json}      |    35 +-
 .../{CMIP6_aerhourly.json => CMIP6_AERhr.json}     |    30 +-
 .../{CMIP6_aermonthly.json => CMIP6_AERmon.json}   |   856 +-
 TestTables/CMIP6_AERmonZ.json                      |   307 +
 TestTables/CMIP6_Amon.json                         |   158 +-
 TestTables/CMIP6_AmonAdj.json                      |    86 -
 TestTables/CMIP6_Amon_json_hfls                    |     6 +-
 TestTables/{CMIP6_cf3hr.json => CMIP6_CF3hr.json}  |   224 +-
 TestTables/{CMIP6_cfDay.json => CMIP6_CFday.json}  |    54 +-
 TestTables/{CMIP6_cfMon.json => CMIP6_CFmon.json}  |    24 +-
 TestTables/{CMIP6_Amon.json => CMIP6_CFsubhr.json} |   986 +-
 .../{CMIP6_cfOff.json => CMIP6_CFsubhrOff.json}    |    12 +-
 TestTables/CMIP6_CORDEX_day.json                   |     1 -
 TestTables/CMIP6_CV.json                           | 10116 +++++++++++--------
 TestTables/CMIP6_CV_minimal.json                   |     8 -
 TestTables/{CMIP6_em1hr.json => CMIP6_E1hr.json}   |    84 +-
 ...P6_em1hrclimmon.json => CMIP6_E1hrClimMon.json} |    10 +-
 TestTables/CMIP6_E3hr.json                         |   341 +
 TestTables/{CMIP6_em3hr.json => CMIP6_E3hrPt.json} |   664 +-
 TestTables/CMIP6_E6hrZ.json                        |    52 +
 TestTables/{CMIP6_emDay.json => CMIP6_Eday.json}   |  1029 +-
 TestTables/{CMIP6_emDayZ.json => CMIP6_EdayZ.json} |    65 +-
 TestTables/CMIP6_Efx.json                          |   256 +
 TestTables/{CMIP6_emMon.json => CMIP6_Emon.json}   |  1401 +--
 TestTables/{CMIP6_emMonZ.json => CMIP6_EmonZ.json} |   488 +-
 .../{CMIP6_emSubhr.json => CMIP6_Esubhr.json}      |    44 +-
 TestTables/{CMIP6_emYr.json => CMIP6_Eyr.json}     |   116 +-
 .../{CMIP6_LIfxgre.json => CMIP6_IfxAnt.json}      |    28 +-
 .../{CMIP6_LIfxant.json => CMIP6_IfxGre.json}      |    28 +-
 .../{CMIP6_LImongre.json => CMIP6_ImonAnt.json}    |   158 +-
 .../{CMIP6_LImonant.json => CMIP6_ImonGre.json}    |   158 +-
 .../{CMIP6_LIyrant.json => CMIP6_IyrAnt.json}      |   132 +-
 .../{CMIP6_LIyrgre.json => CMIP6_IyrGre.json}      |   132 +-
 TestTables/CMIP6_LImon.json                        |    70 +-
 TestTables/CMIP6_Lmon.json                         |    92 +-
 TestTables/CMIP6_Oclim.json                        |    22 +-
 TestTables/CMIP6_Oday.json                         |    39 +-
 TestTables/CMIP6_Odec.json                         |   426 +
 TestTables/CMIP6_Ofx.json                          |   103 +-
 TestTables/CMIP6_Omon.json                         |  3923 ++++---
 TestTables/CMIP6_Omonbad.json                      |     4 +-
 TestTables/CMIP6_Oyr.json                          |   402 +-
 TestTables/CMIP6_SIday.json                        |   109 +-
 TestTables/CMIP6_SImon.json                        |   279 +-
 TestTables/CMIP6_aerannual.json                    |     1 -
 TestTables/CMIP6_badOmon.json                      |  5825 -----------
 TestTables/CMIP6_cf3hr_0.json                      |     6 +-
 TestTables/CMIP6_cf3hr_1.json                      |     6 +-
 TestTables/CMIP6_cf3hr_2.json                      |     6 +-
 TestTables/CMIP6_cfSites.json                      |   647 --
 TestTables/CMIP6_chunking.json                     |    39 +
 TestTables/CMIP6_configure.json                    |     5 -
 TestTables/CMIP6_coordinate.json                   |   308 +-
 ...nate.json => CMIP6_coordinateTESTNOBOUNDS.json} |    12 +-
 TestTables/CMIP6_day.json                          |   243 +-
 TestTables/CMIP6_em3hrpt.json                      |   375 -
 TestTables/CMIP6_emDaypt.json                      |    52 -
 TestTables/CMIP6_emFx.json                         |   171 -
 TestTables/CMIP6_emMonpt.json                      |    35 -
 TestTables/CMIP6_excerpts.json                     |   295 -
 TestTables/CMIP6_expt_list_042716-1.csv            |     1 -
 TestTables/CMIP6_expt_list_062116.csv              |     1 -
 TestTables/CMIP6_fx.json                           |    90 +-
 TestTables/CMIP6_grids.json                        |    10 +-
 TestTables/md5s                                    |     1 -
 {Test => TestTables}/python_test_table_A           |    13 +-
 configure                                          |    18 +-
 configure.ac                                       |     2 +-
 debian/changelog                                   |     6 +
 include/cdTime/cfortran.h                          |   136 +-
 include/cmor.h                                     |    47 +-
 include/cmor_func_def.h                            |    26 +-
 include/cmor_locale.h                              |     2 +-
 run_tests.py                                       |     2 +-
 run_tests2.py                                      |    40 +
 scripts/conda_upload.sh                            |    36 +
 scripts/createCMIP6CV.py                           |    36 +-
 setup.py.in                                        |    18 +-
 247 files changed, 23299 insertions(+), 44761 deletions(-)
 rename {scripts => LibCV/PrePARE}/PrePARE.py (76%)
 create mode 100644 LibCV/PrePARE/__init__.py
 copy Test/{common_user_input.json => common_user_input2.json} (76%)
 copy Test/{common_user_input.json => common_user_inputNOBOUNDS.json} (74%)
 copy Test/{common_user_input.json => common_user_input_NOID.json} (74%)
 copy Test/{common_user_input.json => common_user_input_a.json} (76%)
 create mode 100644 Test/common_user_input_b.json
 create mode 100644 Test/test_chunking.py
 delete mode 100644 Test/test_python_3hr.py
 delete mode 100644 Test/test_python_CMIP6_CV_badgridresolution2.py
 create mode 100644 Test/test_python_CMIP6_CV_forcemultipleparent.py
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_forcenoparent.py} (76%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_forceparent.py} (65%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_parentmipera.py} (69%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_parentsourceid.py} (69%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_parenttimeunits.py} (66%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_parentvariantlabel.py} (69%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_sub_experimentIDbad.py} (68%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_sub_experiment_id.py} (68%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_sub_experimentbad.py} (64%)
 copy Test/{test_python_CMIP6_CV_badinstitution.py => test_python_CMIP6_CV_sub_experimentnotset.py} (65%)
 create mode 100644 Test/test_python_CMIP6_projections.py
 delete mode 100644 Test/test_python_jamie_11.py
 create mode 100644 Test/test_python_toomany_tables.py
 delete mode 100644 TestTables/CMIP5_3hr
 delete mode 100644 TestTables/CMIP5_6hrLev
 delete mode 100644 TestTables/CMIP5_Amon
 delete mode 100644 TestTables/CMIP5_Lmon
 delete mode 100644 TestTables/CMIP5_Omon
 delete mode 100644 TestTables/CMIP5_cf3hr
 delete mode 100644 TestTables/CMIP5_cfMon
 delete mode 100644 TestTables/CMIP5_cfSites
 delete mode 100644 TestTables/CMIP5_day
 delete mode 100644 TestTables/CMIP5_fx
 delete mode 100644 TestTables/CMIP5_grids
 rename TestTables/{CMIP6_6hrPlevpt.json => CMIP6_6hrPlevPt.json} (76%)
 rename TestTables/{CMIP6_aerdaily.json => CMIP6_AERday.json} (72%)
 rename TestTables/{CMIP6_aerfixed.json => CMIP6_AERfx.json} (57%)
 rename TestTables/{CMIP6_aerhourly.json => CMIP6_AERhr.json} (83%)
 rename TestTables/{CMIP6_aermonthly.json => CMIP6_AERmon.json} (74%)
 create mode 100644 TestTables/CMIP6_AERmonZ.json
 delete mode 100644 TestTables/CMIP6_AmonAdj.json
 rename TestTables/{CMIP6_cf3hr.json => CMIP6_CF3hr.json} (72%)
 rename TestTables/{CMIP6_cfDay.json => CMIP6_CFday.json} (94%)
 rename TestTables/{CMIP6_cfMon.json => CMIP6_CFmon.json} (98%)
 copy TestTables/{CMIP6_Amon.json => CMIP6_CFsubhr.json} (64%)
 rename TestTables/{CMIP6_cfOff.json => CMIP6_CFsubhrOff.json} (96%)
 delete mode 100644 TestTables/CMIP6_CORDEX_day.json
 delete mode 100644 TestTables/CMIP6_CV_minimal.json
 rename TestTables/{CMIP6_em1hr.json => CMIP6_E1hr.json} (89%)
 rename TestTables/{CMIP6_em1hrclimmon.json => CMIP6_E1hrClimMon.json} (95%)
 create mode 100644 TestTables/CMIP6_E3hr.json
 rename TestTables/{CMIP6_em3hr.json => CMIP6_E3hrPt.json} (64%)
 create mode 100644 TestTables/CMIP6_E6hrZ.json
 rename TestTables/{CMIP6_emDay.json => CMIP6_Eday.json} (81%)
 rename TestTables/{CMIP6_emDayZ.json => CMIP6_EdayZ.json} (85%)
 create mode 100644 TestTables/CMIP6_Efx.json
 rename TestTables/{CMIP6_emMon.json => CMIP6_Emon.json} (90%)
 rename TestTables/{CMIP6_emMonZ.json => CMIP6_EmonZ.json} (55%)
 rename TestTables/{CMIP6_emSubhr.json => CMIP6_Esubhr.json} (96%)
 rename TestTables/{CMIP6_emYr.json => CMIP6_Eyr.json} (76%)
 rename TestTables/{CMIP6_LIfxgre.json => CMIP6_IfxAnt.json} (80%)
 rename TestTables/{CMIP6_LIfxant.json => CMIP6_IfxGre.json} (80%)
 rename TestTables/{CMIP6_LImongre.json => CMIP6_ImonAnt.json} (82%)
 rename TestTables/{CMIP6_LImonant.json => CMIP6_ImonGre.json} (82%)
 rename TestTables/{CMIP6_LIyrant.json => CMIP6_IyrAnt.json} (87%)
 rename TestTables/{CMIP6_LIyrgre.json => CMIP6_IyrGre.json} (87%)
 create mode 100644 TestTables/CMIP6_Odec.json
 delete mode 100644 TestTables/CMIP6_aerannual.json
 delete mode 100644 TestTables/CMIP6_badOmon.json
 delete mode 100644 TestTables/CMIP6_cfSites.json
 create mode 100644 TestTables/CMIP6_chunking.json
 delete mode 100644 TestTables/CMIP6_configure.json
 copy TestTables/{CMIP6_coordinate.json => CMIP6_coordinateTESTNOBOUNDS.json} (99%)
 delete mode 100644 TestTables/CMIP6_em3hrpt.json
 delete mode 100644 TestTables/CMIP6_emDaypt.json
 delete mode 100644 TestTables/CMIP6_emFx.json
 delete mode 100644 TestTables/CMIP6_emMonpt.json
 delete mode 100644 TestTables/CMIP6_excerpts.json
 delete mode 100644 TestTables/CMIP6_expt_list_042716-1.csv
 delete mode 100644 TestTables/CMIP6_expt_list_062116.csv
 delete mode 100644 TestTables/md5s
 rename {Test => TestTables}/python_test_table_A (99%)
 create mode 100644 run_tests2.py
 create mode 100755 scripts/conda_upload.sh

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