[esys-particle] branch experimental updated (cd1a772 -> 0dea808)
Anton Gladky
gladk at moszumanska.debian.org
Mon May 29 21:01:19 UTC 2017
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch experimental
in repository esys-particle.
from cd1a772 Update changelog.
adds 9f6d5e3 Imported Upstream version 2.2.u1
adds 4242700 Merge tag 'upstream/2.2.u1'
adds d3c46e6 Update email.
adds e48af0f Update dates in copyright.
adds 40e5f64 Use dh-autoreconf.
adds 3183764 Clean in debian/rules
adds fea3e8d Update changelog.
adds db2c5f2 Fix FTBFS.
adds 316ed28 Add graphviz to BD.
adds 1a8b487 Disable autotests on some archs (mpich2).
adds 6eae7c2 Update changelog.
adds 0705c94 Update debian/watch.
adds eae57a4 Imported Upstream version 2.2.2
adds 3b9b5a1 Merge tag 'upstream/2.2.2'
adds 6a29aac Change version number in docs.
adds 90e4576 Use canonical VCS.
adds 170a9da Update changelog.
adds aab3e6d Disable autotests on ia64.
adds d1607f8 Use wrap-and-sort.
adds 854d150 Update changelog.
adds e3f8cf5 Set NO_PNG_PKG_MANGLE to avoid taking days to build on buildds.
adds ea3f3d0 Imported Upstream version 2.3
adds 3d23e76 Merge tag 'upstream/2.3'
adds 9f1ea9e Update docs.
adds b4d3f6b Bump Standards-Version: 3.9.5.
adds b150590 Update dates in copyright.
adds 754563b Force linking with boost_python.
adds aab3773 Ignore quilt dir
adds 27fecb7 Unapply patches after build
adds 780e3a7 Update changelog.
adds 6532889 Link python explicitly.
adds 4e1ad10 Add autopkgtest.
adds 5752aa6 AUpdate changelog.
adds cd2a862 Migrate to vtk6.
adds 2e8942e Refresh patches.
adds 6a4d843 Update d/copyright.
adds f7dee14 Update d/watch.
adds 4bab6ec Update doc-files.
adds 208d2f3 Enable pdf-generation.
adds 8d734ab Enable vtk. (Closes: #784161)
adds 6c7087a Prevent epydoc from putting timestamp in docs
adds 5c8b664 Update d/copyright.
adds 5c6f33b Update d/watch.
adds 4aba894 Imported Upstream version 2.3.3+dfsg1
adds 83908f0 Merge tag 'upstream/2.3.3+dfsg1'
adds 483cbe6 Update changelog.
adds e1bd0e9 Fix build-test. (Closes: #813814)
adds 6864793 Apply cme fix dpkg.
adds af388bd Fix autopkgtest.
adds e372fa2 Update changelog.
adds 15dc089 Imported Upstream version 2.3.4+dfsg1
adds 28a17bc Merge tag 'upstream/2.3.4+dfsg1'
adds 677425a Refresh patches.
adds 04eefeb Fix FTBFS with gcc-6. (Closes: #811838)
adds 10913b7 Update changelog.
adds c532de1 Esys-Particle relicensed under Apache-2.0
adds db23dbe Update changelog.
adds 38e17b8 Temporarly disable build-test. (Closes: #837914)
adds 223a069 Update changelog.
adds 98275b4 Allow stderr output in the autopkgtests, see #814451
adds 1cbced3 Replace deprecated OMPI_MCA_orte_rsh_agent with OMPI_MCA_plm_rsh_agent
adds 80173d5 Allow --oversubscribe for autopkgtests
adds 8c2c2f2 Fix path in doc-base.
adds 44eaa1d Apply cme fix dpkg.
adds c4c1948 Update changelog.
adds aa0e9a5 New upstream version 2.3.5+dfsg1
new a7eb434 Merge tag 'upstream/2.3.5+dfsg1'
new 6cf5103 Refresh patches.
new 3cb6141 Update path in doc-base.
new bcca51d Shorten line in d/changelog.
new 238adb6 Switch to compat level 10.
new 70647ad Use hardening=+all option.
new 0dea808 Update changelog.
The 7 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 1 +
AUTHORS | 21 +-
COPYING | 18 +-
COPYRIGHT | 18 +-
ChangeLog | 18 +-
Config/Cpp.am | 8 +-
Config/Python.am | 8 +-
Config/boost.m4 | 790 +-
Config/python.m4 | 82 +-
Config/rules.am | 8 +-
Doc/Deprecated/FileFormat.pdf | Bin 64336 -> 0 bytes
Doc/Deprecated/FileFormat.ps | 2861 -
Doc/Deprecated/FileFormat.tex | 144 -
Doc/Deprecated/FileFormat.txt | 11 -
Doc/Deprecated/Manual/distutils.sty | 33 -
Doc/Deprecated/Manual/dump-file.tex | 2 -
Doc/Deprecated/Manual/fancyhdr.sty | 329 -
Doc/Deprecated/Manual/fncychap.sty | 433 -
Doc/Deprecated/Manual/geo-file.tex | 135 -
Doc/Deprecated/Manual/howto.cls | 107 -
Doc/Deprecated/Manual/ltxmarkup.sty | 40 -
Doc/Deprecated/Manual/manual.cls | 153 -
Doc/Deprecated/Manual/pypaper.sty | 18 -
Doc/Deprecated/Manual/python.ist | 11 -
Doc/Deprecated/Manual/python.sty | 1309 -
Doc/Deprecated/Manual/underscore.sty | 232 -
Doc/Deprecated/Manual/userman.tex | 1009 -
Doc/Deprecated/Refman/refman.tex | 676 -
Doc/ESyS-Particle_Tutorial.pdf | 20659 -----
Doc/Notes/ESyS-ParticleNotes.tex | 135 +
Doc/Notes/Makefile.am | 49 +
Doc/Notes/ReportStyle.sty | 64 +
Doc/{Tutorial => Notes}/makeglos.pl | 0
Doc/Notes/render.sh | 9 +
Doc/Notes/source-files/move_output_files.sh | 6 +
Doc/Notes/source-files/out2file.py | 40 +
Doc/Notes/source-files/run_esysparticle_test.sh | 94 +
.../tex-files/Ch-ESyS-ParticleDefinitions.tex | 108 +
.../tex-files/Ch-ESyS-ParticleReleaseBuild.tex | 255 +
.../tex-files/Ch-ESyS-ParticleReleaseProblems.tex | 178 +
.../tex-files/Ch-ESyS-ParticleReleaseSteps.tex | 79 +
.../tex-files/Ch-ESyS-ParticleReleaseTesting.tex | 160 +
Doc/Tutorial/Makefile.am | 27 +-
Doc/Tutorial/bodytext.tex | 61 +-
Doc/Tutorial/cluster_box.jpg | Bin 0 -> 211488 bytes
Doc/Tutorial/examples/POVsnaps.py.tex | 2 +-
Doc/Tutorial/examples/ServoWallLoader.py.tex | 2 +
Doc/Tutorial/examples/WallLoader.py.tex | 2 +
Doc/Tutorial/examples/bingle_output.py.tex | 7 +-
Doc/Tutorial/examples/bingle_vis.py.tex | 4 +-
Doc/Tutorial/examples/cluster_box.py.tex | 91 +
Doc/Tutorial/examples/gravity_cube.py.tex | 2 +
Doc/Tutorial/examples/simple_box_compact.py.tex | 46 +
Doc/Tutorial/examples/smooth_box_compact.py.tex | 67 +
Doc/Tutorial/gengeo.tex | 288 +
Doc/Tutorial/gengeo_box.jpg | Bin 0 -> 249597 bytes
Doc/Tutorial/paper.tex | 29 +-
Doc/Tutorial/smooth_box.jpg | Bin 0 -> 214307 bytes
Doc/Tutorial/tables/field_names.tex | 8 +-
Doc/Tutorial/tables/file_format_description.tex | 34 +
Doc/Tutorial/tables/file_formats.tex | 49 +-
Doc/Tutorial/tables/interaction_groups.tex | 48 +-
Doxyfile | 2 +-
Fields/CheckedScalarInteractionFieldSlave.h | 8 +-
Fields/CheckedScalarInteractionFieldSlave.hpp | 8 +-
Fields/CheckedScalarInteractionFieldSlaveTagged.h | 8 +-
.../CheckedScalarInteractionFieldSlaveTagged.hpp | 8 +-
Fields/CheckedVectorInteractionFieldSlave.h | 8 +-
Fields/FieldMaster.cpp | 8 +-
Fields/FieldMaster.h | 8 +-
Fields/FieldSlave.cpp | 8 +-
Fields/FieldSlave.h | 8 +-
Fields/InteractionFieldMaster.cpp | 8 +-
Fields/InteractionFieldMaster.h | 8 +-
Fields/InteractionFieldSlave.h | 10 +-
Fields/InteractionFieldSlave.hpp | 17 +-
Fields/Makefile.am | 8 +-
Fields/MaxTrigger.cpp | 8 +-
Fields/MaxTrigger.h | 8 +-
Fields/ParticleFieldMaster.cpp | 8 +-
Fields/ParticleFieldMaster.h | 8 +-
Fields/ScalarInteractionFieldSlave.h | 9 +-
Fields/ScalarInteractionFieldSlave.hpp | 28 +-
Fields/ScalarInteractionFieldSlaveTagged.h | 8 +-
Fields/ScalarInteractionFieldSlaveTagged.hpp | 8 +-
Fields/ScalarParticleDistributionMaster.cpp | 8 +-
Fields/ScalarParticleDistributionMaster.h | 8 +-
Fields/ScalarParticleFieldSlave.h | 8 +-
Fields/ScalarParticleFieldSlave.hpp | 8 +-
Fields/ScalarParticleFieldSlaveTagged.h | 8 +-
Fields/ScalarParticleFieldSlaveTagged.hpp | 8 +-
Fields/ScalarTriangleFieldMaster.cpp | 8 +-
Fields/ScalarTriangleFieldMaster.h | 8 +-
Fields/ScalarTriangleFieldSlave.cpp | 8 +-
Fields/ScalarTriangleFieldSlave.h | 8 +-
Fields/TriggeredVectorParticleFieldMaster.cpp | 8 +-
Fields/TriggeredVectorParticleFieldMaster.h | 8 +-
Fields/VectorEdge2DFieldSlave.cpp | 8 +-
Fields/VectorEdge2DFieldSlave.h | 8 +-
Fields/VectorInteractionFieldMaster.cpp | 8 +-
Fields/VectorInteractionFieldMaster.h | 8 +-
Fields/VectorInteractionFieldSlave.h | 8 +-
Fields/VectorInteractionFieldSlave.hpp | 8 +-
Fields/VectorParticleFieldSlave.h | 8 +-
Fields/VectorParticleFieldSlave.hpp | 8 +-
Fields/VectorParticleFieldSlaveTagged.h | 8 +-
Fields/VectorParticleFieldSlaveTagged.hpp | 8 +-
Fields/VectorTriangleFieldMaster.cpp | 8 +-
Fields/VectorTriangleFieldMaster.h | 8 +-
Fields/VectorTriangleFieldSlave.cpp | 8 +-
Fields/VectorTriangleFieldSlave.h | 8 +-
Fields/VectorWallFieldSlave.h | 8 +-
Fields/VectorWallFieldSlave.hpp | 8 +-
Fields/WallFieldMaster.cpp | 8 +-
Fields/WallFieldMaster.h | 8 +-
Fields/WallFieldSlave.cpp | 8 +-
Fields/WallFieldSlave.h | 8 +-
Fields/field_const.h | 8 +-
Foundation/BoundingBox.cpp | 8 +-
Foundation/BoundingBox.h | 8 +-
Foundation/BoundingBox.hpp | 8 +-
Foundation/BoundingSphere.cpp | 8 +-
Foundation/BoundingSphere.h | 8 +-
Foundation/BoundingSphere.hpp | 8 +-
Foundation/Counter.cpp | 8 +-
Foundation/Counter.h | 8 +-
Foundation/Error.h | 8 +-
Foundation/Functional.h | 8 +-
Foundation/Makefile.am | 8 +-
Foundation/Matrix3.cpp | 8 +-
Foundation/Matrix3.h | 8 +-
Foundation/Matrix3.hpp | 8 +-
Foundation/PathSearcher.cpp | 8 +-
Foundation/PathSearcher.h | 8 +-
Foundation/PathUtil.cpp | 8 +-
Foundation/PathUtil.h | 8 +-
Foundation/Quaternion.cpp | 8 +-
Foundation/Quaternion.h | 8 +-
Foundation/Quaternion.hpp | 8 +-
Foundation/RingBuffer.h | 8 +-
Foundation/RingBuffer.hpp | 8 +-
Foundation/Rng.cpp | 8 +-
Foundation/Rng.h | 8 +-
Foundation/Rng.hpp | 8 +-
Foundation/Runnable.cpp | 8 +-
Foundation/Runnable.h | 8 +-
Foundation/StlIterator.h | 8 +-
Foundation/StringUtil.cpp | 8 +-
Foundation/StringUtil.h | 8 +-
Foundation/Timer.cpp | 8 +-
Foundation/Timer.h | 8 +-
Foundation/console.cpp | 550 +-
Foundation/console.h | 164 +-
Foundation/console.hpp | 15 +
Foundation/cube_eq.cpp | 8 +-
Foundation/cube_eq.h | 8 +-
Foundation/quadtuple.h | 8 +-
Foundation/quintuple.h | 8 +-
Foundation/realdist.cpp | 8 +-
Foundation/realdist.h | 8 +-
Foundation/t_list.h | 8 +-
Foundation/t_list.hpp | 8 +-
Foundation/triplet.h | 8 +-
Foundation/vec3.cpp | 8 +-
Foundation/vec3.h | 8 +-
Foundation/vec3.hpp | 8 +-
Foundation/version.h | 10 +-
Geometry/AEdge.cpp | 8 +-
Geometry/AEdge.h | 8 +-
Geometry/ARandomAssembly.cpp | 8 +-
Geometry/ARandomAssembly.h | 8 +-
Geometry/BasicInteraction.cpp | 8 +-
Geometry/BasicInteraction.h | 8 +-
Geometry/BlockGenerator.cpp | 8 +-
Geometry/BlockGenerator.h | 8 +-
Geometry/BoxPacker.cpp | 8 +-
Geometry/BoxPacker.h | 8 +-
Geometry/BoxPacker.hpp | 8 +-
Geometry/CircleBoxVolCalculator.cpp | 8 +-
Geometry/CircleBoxVolCalculator.h | 8 +-
Geometry/CircularNeighbourTable.cpp | 8 +-
Geometry/CircularNeighbourTable.h | 8 +-
Geometry/CircularNeighbourTable.hpp | 8 +-
Geometry/ClosePackBlock.cpp | 8 +-
Geometry/ClosePackBlock.h | 8 +-
Geometry/ClosePackBlock.hpp | 8 +-
Geometry/ClosePackIterator.cpp | 8 +-
Geometry/ClosePackIterator.h | 8 +-
Geometry/ClosePackIterator.hpp | 8 +-
Geometry/ClosePackOrientation.h | 8 +-
Geometry/Corner.cpp | 8 +-
Geometry/Corner.h | 8 +-
Geometry/Corner2D.cpp | 8 +-
Geometry/Corner2D.h | 8 +-
Geometry/CubicBlock.cpp | 8 +-
Geometry/CubicBlock.h | 8 +-
Geometry/CubicBlock.hpp | 8 +-
Geometry/CubicBlockIterator.cpp | 8 +-
Geometry/CubicBlockIterator.h | 8 +-
Geometry/CubicBlockIterator.hpp | 8 +-
Geometry/CubicBoxPacker.cpp | 8 +-
Geometry/CubicBoxPacker.h | 8 +-
Geometry/CubicBoxPacker.hpp | 8 +-
Geometry/DistConnections.cpp | 8 +-
Geometry/DistConnections.h | 8 +-
Geometry/DistConnections.hpp | 8 +-
Geometry/Edge.cpp | 8 +-
Geometry/Edge.h | 8 +-
Geometry/Edge2D.cpp | 8 +-
Geometry/Edge2D.h | 8 +-
Geometry/FaultedBlock2d.cpp | 8 +-
Geometry/FaultedBlock2d.h | 8 +-
Geometry/GeometryInfo.cpp | 17 +-
Geometry/GeometryInfo.h | 8 +-
Geometry/GougeBlock3D.cpp | 8 +-
Geometry/GougeBlock3D.h | 8 +-
Geometry/GougeConfig.cpp | 8 +-
Geometry/GougeConfig.h | 8 +-
Geometry/GougeConfig.hpp | 8 +-
Geometry/Grain.cpp | 8 +-
Geometry/Grain.h | 8 +-
Geometry/Grain.hpp | 8 +-
Geometry/GrainCollection.cpp | 8 +-
Geometry/GrainCollection.h | 8 +-
Geometry/GrainCollection.hpp | 8 +-
Geometry/GrainRandomBoxPacker.cpp | 8 +-
Geometry/GrainRandomBoxPacker.h | 8 +-
Geometry/GrainRandomBoxPacker.hpp | 8 +-
Geometry/GranularGougeBlock3D.cpp | 8 +-
Geometry/GranularGougeBlock3D.h | 8 +-
Geometry/GridIterator.cpp | 8 +-
Geometry/GridIterator.h | 8 +-
Geometry/HexagBlock.cpp | 8 +-
Geometry/HexagBlock.h | 8 +-
Geometry/HexagBlock.hpp | 8 +-
Geometry/HexagBlockIterator.cpp | 8 +-
Geometry/HexagBlockIterator.h | 8 +-
Geometry/HexagBlockIterator.hpp | 8 +-
Geometry/IntersectionVolCalculator.cpp | 8 +-
Geometry/IntersectionVolCalculator.h | 8 +-
Geometry/IntersectionVolCalculator.hpp | 8 +-
Geometry/LayeredBlock.cpp | 8 +-
Geometry/LayeredBlock.h | 8 +-
Geometry/Line.cpp | 8 +-
Geometry/Line.h | 8 +-
Geometry/LineSegment.cpp | 8 +-
Geometry/LineSegment.h | 8 +-
Geometry/Makefile.am | 8 +-
Geometry/NeighbourTable.cpp | 8 +-
Geometry/NeighbourTable.h | 8 +-
Geometry/NeighbourTable.hpp | 8 +-
Geometry/Packer.cpp | 8 +-
Geometry/Packer.h | 8 +-
Geometry/Packer.hpp | 8 +-
Geometry/PackerGenerators.cpp | 8 +-
Geometry/PackerGenerators.h | 8 +-
Geometry/PackerGenerators.hpp | 8 +-
Geometry/PaddedBlock3D.cpp | 8 +-
Geometry/PaddedBlock3D.h | 8 +-
Geometry/ParticleCollection.cpp | 8 +-
Geometry/ParticleCollection.h | 8 +-
Geometry/ParticleCollection.hpp | 8 +-
Geometry/ParticleComparer.cpp | 8 +-
Geometry/ParticleComparer.h | 8 +-
Geometry/ParticleComparer.hpp | 8 +-
Geometry/ParticleFitter.cpp | 8 +-
Geometry/ParticleFitter.h | 8 +-
Geometry/ParticleGenerator.cpp | 8 +-
Geometry/ParticleGenerator.h | 8 +-
Geometry/Plane3D.cpp | 8 +-
Geometry/Plane3D.h | 8 +-
Geometry/PointCloud.cpp | 8 +-
Geometry/PointCloud.h | 8 +-
Geometry/RandomAssembly2D.cpp | 8 +-
Geometry/RandomAssembly2D.h | 8 +-
Geometry/RandomAssembly3D.cpp | 8 +-
Geometry/RandomAssembly3D.h | 8 +-
Geometry/RandomBlock.cpp | 8 +-
Geometry/RandomBlock.h | 8 +-
Geometry/RandomBlock3D.cpp | 8 +-
Geometry/RandomBlock3D.h | 8 +-
Geometry/RandomBlockGenerator.cpp | 8 +-
Geometry/RandomBlockGenerator.h | 8 +-
Geometry/RandomBoxPacker.cpp | 8 +-
Geometry/RandomBoxPacker.h | 8 +-
Geometry/RandomBoxPacker.hpp | 8 +-
Geometry/RandomSpherePacker.cpp | 8 +-
Geometry/RandomSpherePacker.h | 8 +-
Geometry/RandomSpherePacker.hpp | 8 +-
Geometry/RectPatch.cpp | 8 +-
Geometry/RectPatch.h | 8 +-
Geometry/RegularBlockGenerator.cpp | 8 +-
Geometry/RegularBlockGenerator.h | 8 +-
Geometry/RoughPaddedBlock3d.cpp | 8 +-
Geometry/RoughPaddedBlock3d.h | 8 +-
Geometry/SimpleBlock.cpp | 8 +-
Geometry/SimpleBlock.h | 8 +-
Geometry/SimpleBlock.hpp | 8 +-
Geometry/SimpleNTable.cpp | 8 +-
Geometry/SimpleNTable.h | 8 +-
Geometry/SimpleNTable3D.cpp | 8 +-
Geometry/SimpleNTable3D.h | 8 +-
Geometry/SimpleParticle.cpp | 8 +-
Geometry/SimpleParticle.h | 8 +-
Geometry/SimpleParticle.hpp | 8 +-
Geometry/SimpleParticleData.cpp | 8 +-
Geometry/SimpleParticleData.h | 8 +-
Geometry/SimpleParticleData.hpp | 8 +-
Geometry/SphAggGougeBlock.cpp | 8 +-
Geometry/SphAggGougeBlock.h | 8 +-
Geometry/SphAggGougeBlock.hpp | 8 +-
Geometry/Sphere.h | 8 +-
Geometry/Sphere2d.cpp | 8 +-
Geometry/Sphere2d.h | 8 +-
Geometry/Sphere3d.cpp | 8 +-
Geometry/Sphere3d.h | 8 +-
Geometry/SphereBlockGenerator.cpp | 8 +-
Geometry/SphereBlockGenerator.h | 8 +-
Geometry/SphereBoxVolCalculator.cpp | 8 +-
Geometry/SphereBoxVolCalculator.h | 8 +-
Geometry/SphereFitter.cpp | 8 +-
Geometry/SphereFitter.h | 8 +-
Geometry/SphereFitter.hpp | 8 +-
Geometry/SphereNeighbours.cpp | 8 +-
Geometry/SphereNeighbours.h | 8 +-
Geometry/SphereNeighbours.hpp | 8 +-
Geometry/SplitBlock.cpp | 8 +-
Geometry/SplitBlock.h | 8 +-
Geometry/SplitBlock3D.cpp | 8 +-
Geometry/SplitBlock3D.h | 8 +-
Geometry/Triangle.cpp | 8 +-
Geometry/Triangle.h | 8 +-
Geometry/Vec3L.cpp | 8 +-
Geometry/Vec3L.h | 8 +-
Geometry/VtkXmlWriter.cpp | 8 +-
Geometry/VtkXmlWriter.h | 8 +-
INSTALL | 18 +-
Makefile.am | 8 +-
Model/ABCDamping.h | 8 +-
Model/ABCDamping.hpp | 8 +-
Model/ABCDampingIGP.cpp | 8 +-
Model/ABCDampingIGP.h | 8 +-
Model/AdhesiveFriction.cpp | 8 +-
Model/AdhesiveFriction.h | 8 +-
Model/BCorner2DInteraction.cpp | 8 +-
Model/BCorner2DInteraction.h | 8 +-
Model/BEdge2DInteraction.cpp | 8 +-
Model/BEdge2DInteraction.h | 8 +-
Model/BMesh2DIP.h | 8 +-
Model/BMesh2DInteraction.h | 8 +-
Model/BMesh2DInteractionCpData.cpp | 8 +-
Model/BMesh2DInteractionCpData.h | 8 +-
Model/BTriMeshIP.cpp | 8 +-
Model/BTriMeshIP.h | 8 +-
Model/BTriMeshInteraction.h | 8 +-
Model/BTriMeshInteractionCpData.cpp | 8 +-
Model/BTriMeshInteractionCpData.h | 8 +-
Model/BTriangleInteraction.cpp | 8 +-
Model/BTriangleInteraction.h | 8 +-
Model/BWallInteraction.cpp | 8 +-
Model/BWallInteraction.h | 8 +-
Model/BWallInteraction.hpp | 8 +-
Model/BWallInteractionGroup.cpp | 8 +-
Model/BWallInteractionGroup.h | 8 +-
Model/BWallInteractionGroup.hpp | 8 +-
Model/BasicParticle.cpp | 8 +-
Model/BasicParticle.h | 8 +-
Model/BodyForceGroup.cpp | 8 +-
Model/BodyForceGroup.h | 8 +-
Model/BodyForceGroup.hpp | 10 +-
Model/BondedInteraction.cpp | 8 +-
Model/BondedInteraction.h | 8 +-
Model/BondedInteractionCpData.cpp | 8 +-
Model/BondedInteractionCpData.h | 8 +-
Model/CappedBondedInteraction.cpp | 8 +-
Model/CappedBondedInteraction.h | 8 +-
Model/Damping.h | 8 +-
Model/Damping.hpp | 8 +-
Model/DampingIGP.cpp | 8 +-
Model/DampingIGP.h | 8 +-
Model/ECorner2DInteraction.cpp | 8 +-
Model/ECorner2DInteraction.h | 8 +-
Model/ECornerInteraction.cpp | 8 +-
Model/ECornerInteraction.h | 8 +-
Model/EEdge2DInteraction.cpp | 8 +-
Model/EEdge2DInteraction.h | 8 +-
Model/EEdgeInteraction.cpp | 8 +-
Model/EEdgeInteraction.h | 8 +-
Model/EMesh2DInteraction.h | 8 +-
.../ESphereBodyInteraction.cpp | 10 +-
...EWallInteraction.h => ESphereBodyInteraction.h} | 30 +-
Model/ESphereBodyInteraction.hpp | 92 +
Model/ESphereBodyInteractionGroup.cpp | 61 +
Model/ESphereBodyInteractionGroup.h | 84 +
...onGroup.hpp => ESphereBodyInteractionGroup.hpp} | 96 +-
Model/ETriMeshIP.h | 8 +-
Model/ETriMeshInteraction.h | 8 +-
Model/ETriangleInteraction.cpp | 8 +-
Model/ETriangleInteraction.h | 8 +-
Model/EWallInteraction.cpp | 8 +-
Model/EWallInteraction.h | 8 +-
Model/EWallInteraction.hpp | 8 +-
Model/EWallInteractionGroup.cpp | 8 +-
Model/EWallInteractionGroup.h | 8 +-
Model/EWallInteractionGroup.hpp | 32 +-
Model/ElasticInteraction.cpp | 8 +-
Model/ElasticInteraction.h | 8 +-
Model/ElasticInteractionGroup.cpp | 8 +-
Model/ElasticInteractionGroup.h | 8 +-
Model/ElasticInteractionGroup.hpp | 8 +-
Model/FractalFriction.cpp | 8 +-
Model/FractalFriction.h | 8 +-
Model/FrictionInteraction.cpp | 8 +-
Model/FrictionInteraction.h | 8 +-
...Interaction.cpp => HertzMindlinInteraction.cpp} | 266 +-
...tionInteraction.h => HertzMindlinInteraction.h} | 66 +-
...action.cpp => HertzMindlinViscoInteraction.cpp} | 291 +-
...nteraction.h => HertzMindlinViscoInteraction.h} | 67 +-
Model/HertzianElasticInteraction.cpp | 8 +-
Model/HertzianElasticInteraction.h | 8 +-
Model/HertzianViscoElasticFrictionInteraction.cpp | 8 +-
Model/HertzianViscoElasticFrictionInteraction.h | 8 +-
Model/HertzianViscoElasticInteraction.cpp | 8 +-
Model/HertzianViscoElasticInteraction.h | 8 +-
Model/IGParam.cpp | 8 +-
Model/IGParam.h | 8 +-
Model/Interaction.cpp | 8 +-
Model/Interaction.h | 8 +-
Model/InteractionGroup.h | 8 +-
Model/InteractionGroup.hpp | 8 +-
Model/InteractionParam.cpp | 8 +-
Model/InteractionParam.h | 8 +-
Model/LinearDashpotInteraction.cpp | 8 +-
Model/LinearDashpotInteraction.h | 8 +-
Model/LocalDamping.h | 8 +-
Model/LocalDamping.hpp | 8 +-
Model/LocalDampingIGP.cpp | 8 +-
Model/LocalDampingIGP.h | 8 +-
Model/Makefile.am | 24 +-
Model/Mesh2D.cpp | 8 +-
Model/Mesh2D.h | 8 +-
Model/Mesh2D.hpp | 8 +-
Model/MeshData.cpp | 8 +-
Model/MeshData.h | 8 +-
Model/MeshData2D.cpp | 8 +-
Model/MeshData2D.h | 8 +-
Model/Particle.cpp | 8 +-
Model/Particle.h | 8 +-
Model/RotBondedInteraction.cpp | 72 +-
Model/RotBondedInteraction.h | 23 +-
Model/RotDamping.h | 8 +-
Model/RotDamping.hpp | 8 +-
Model/RotElasticInteraction.cpp | 8 +-
Model/RotElasticInteraction.h | 8 +-
Model/RotElasticInteractionGroup.cpp | 8 +-
Model/RotElasticInteractionGroup.h | 8 +-
Model/RotElasticInteractionGroup.hpp | 8 +-
Model/RotFricInteraction.cpp | 8 +-
Model/RotFricInteraction.h | 8 +-
Model/RotLocalDamping.h | 8 +-
Model/RotLocalDamping.hpp | 8 +-
Model/RotPairInteraction.cpp | 8 +-
Model/RotPairInteraction.h | 8 +-
Model/RotParticle.cpp | 31 +-
Model/RotParticle.h | 11 +-
Model/RotParticleVi.cpp | 8 +-
Model/RotParticleVi.h | 8 +-
Model/RotThermBondedInteraction.cpp | 8 +-
Model/RotThermBondedInteraction.h | 8 +-
Model/RotThermElasticInteraction.cpp | 8 +-
Model/RotThermElasticInteraction.h | 8 +-
Model/RotThermElasticInteractionGroup.cpp | 8 +-
Model/RotThermElasticInteractionGroup.h | 8 +-
Model/RotThermElasticInteractionGroup.hpp | 8 +-
Model/RotThermFricInteraction.cpp | 8 +-
Model/RotThermFricInteraction.h | 8 +-
Model/RotThermPairInteraction.cpp | 8 +-
Model/RotThermPairInteraction.h | 8 +-
Model/RotThermParticle.cpp | 8 +-
Model/RotThermParticle.h | 8 +-
Model/ShortBondedInteraction.cpp | 8 +-
Model/ShortBondedInteraction.h | 8 +-
Model/ShortBondedInteractionCpData.cpp | 8 +-
Model/ShortBondedInteractionCpData.h | 8 +-
Model/SoftBWallInteraction.cpp | 8 +-
Model/SoftBWallInteraction.h | 8 +-
Model/SoftBWallInteraction.hpp | 8 +-
Model/SoftBWallInteractionGroup.cpp | 8 +-
Model/SoftBWallInteractionGroup.h | 9 +-
Model/SoftBWallInteractionGroup.hpp | 11 +-
Model/SphereBody.cpp | 76 +
Model/SphereBody.h | 76 +
Model/SphereBodyIG.h | 76 +
Model/SphereBodyInteraction.h | 54 +
...llInteraction.hpp => SphereBodyInteraction.hpp} | 20 +-
Model/TaggedEWallInteractionGroup.h | 47 +
Model/TaggedEWallInteractionGroup.hpp | 79 +
Model/TempPartStore.h | 8 +-
Model/TempPartStore.hpp | 8 +-
Model/ThermParticle.cpp | 8 +-
Model/ThermParticle.h | 8 +-
Model/TriMesh.cpp | 8 +-
Model/TriMesh.h | 8 +-
Model/TriMesh.hpp | 8 +-
Model/VWFrictionInteraction.cpp | 8 +-
Model/VWFrictionInteraction.h | 8 +-
Model/ViscWallIG.cpp | 8 +-
Model/ViscWallIG.h | 8 +-
Model/ViscWallIG.hpp | 8 +-
Model/ViscWallInteraction.cpp | 8 +-
Model/ViscWallInteraction.h | 8 +-
Model/ViscWallInteraction.hpp | 8 +-
Model/Wall.cpp | 8 +-
Model/Wall.h | 8 +-
Model/WallIG.h | 8 +-
Model/WallInteraction.cpp | 8 +-
Model/WallInteraction.h | 8 +-
Model/WallInteraction.hpp | 8 +-
Model/brokenEWallInteractionGroup.h | 8 +-
Model/brokenEWallInteractionGroup.hpp | 8 +-
NEWS | 18 +-
Parallel/ASubLattice.cpp | 8 +-
Parallel/ASubLattice.h | 15 +-
Parallel/BMesh2D_cmd.cpp | 8 +-
Parallel/BMesh2D_cmd.h | 8 +-
Parallel/BroadCast_cmd.cpp | 8 +-
Parallel/BroadCast_cmd.h | 8 +-
Parallel/BroadCast_cmd.hpp | 8 +-
Parallel/CheckPointController.cpp | 8 +-
Parallel/CheckPointController.h | 8 +-
Parallel/CheckPointInfo.cpp | 8 +-
Parallel/CheckPointInfo.h | 8 +-
Parallel/CheckPointLoader.cpp | 8 +-
Parallel/CheckPointLoader.h | 8 +-
Parallel/CheckPointParams.cpp | 8 +-
Parallel/CheckPointParams.h | 8 +-
Parallel/CheckPointable.cpp | 8 +-
Parallel/CheckPointable.h | 8 +-
Parallel/CheckPointer.cpp | 8 +-
Parallel/CheckPointer.h | 8 +-
Parallel/GeometryReader.cpp | 8 +-
Parallel/GeometryReader.h | 8 +-
Parallel/GetRef_cmd.cpp | 8 +-
Parallel/GetRef_cmd.h | 8 +-
Parallel/IterativeReader.h | 8 +-
Parallel/IterativeReader.hpp | 8 +-
Parallel/LatticeMaster.cpp | 402 +-
Parallel/LatticeMaster.h | 66 +-
Parallel/LatticeMaster.hpp | 41 +-
Parallel/LatticeParam.cpp | 8 +-
Parallel/LatticeParam.h | 8 +-
Parallel/Makefile.am | 11 +-
Parallel/Mesh2DReader.cpp | 8 +-
Parallel/Mesh2DReader.h | 8 +-
Parallel/Mesh2DReaderImpl.cpp | 8 +-
Parallel/Mesh2DReaderImpl.h | 8 +-
Parallel/MeshReader.cpp | 8 +-
Parallel/MeshReader.h | 8 +-
Parallel/MeshReaderImpl.cpp | 8 +-
Parallel/MeshReaderImpl.h | 8 +-
Parallel/MpiInfo.cpp | 8 +-
Parallel/MpiInfo.h | 8 +-
Parallel/MpiWrap.h | 8 +-
Parallel/RankAndComm.h | 8 +-
Parallel/RotSubLattice.h | 8 +-
Parallel/RotSubLattice.hpp | 8 +-
Parallel/SubLattice.cpp | 8 +-
Parallel/SubLattice.h | 20 +-
Parallel/SubLattice.hpp | 337 +-
Parallel/SubLatticeControler.cpp | 69 +-
Parallel/SubLatticeControler.h | 13 +-
Parallel/mpi_tag_defs.h | 8 +-
Parallel/mpia2abuf.cpp | 8 +-
Parallel/mpia2abuf.h | 8 +-
Parallel/mpibarrier.cpp | 8 +-
Parallel/mpibarrier.h | 8 +-
Parallel/mpibuf.cpp | 8 +-
Parallel/mpibuf.h | 8 +-
Parallel/mpicmdbuf.cpp | 8 +-
Parallel/mpicmdbuf.h | 8 +-
Parallel/mpisgbuf.cpp | 8 +-
Parallel/mpisgbuf.h | 8 +-
Parallel/mpisgvbuf.cpp | 8 +-
Parallel/mpisgvbuf.h | 8 +-
Parallel/mpivbuf.cpp | 10 +-
Parallel/mpivbuf.h | 8 +-
Parallel/sublattice_cmd.h | 19 +-
Parallel/vec3_mpi.cpp | 8 +-
Parallel/vec3_mpi.h | 8 +-
Python/BoostPythonUtil/ListConverter.cpp | 8 +-
Python/BoostPythonUtil/ListConverter.h | 8 +-
Python/BoostPythonUtil/Makefile.am | 8 +-
Python/BoostPythonUtil/PythonIterIterator.h | 9 +-
Python/BoostPythonUtil/PythonIterIterator.hpp | 12 +-
Python/BoostPythonUtil/Util.h | 8 +-
Python/Makefile.am | 8 +-
Python/MpiPython/Makefile.am | 10 +-
Python/MpiPython/MpiPythonMain.cpp | 27 +-
Python/epydoc/Makefile.am | 8 +-
Python/esys/Makefile.am | 8 +-
Python/esys/__init__.py | 8 +-
Python/esys/lsm/BondInteractionGroupPy.cpp | 19 +-
Python/esys/lsm/BondInteractionGroupPy.h | 8 +-
Python/esys/lsm/BondedMesh2DPrmsPy.cpp | 19 +-
Python/esys/lsm/BondedMesh2DPrmsPy.h | 8 +-
Python/esys/lsm/BondedTriMeshPrmsPy.cpp | 19 +-
Python/esys/lsm/BondedTriMeshPrmsPy.h | 8 +-
Python/esys/lsm/CheckPointParamsPy.cpp | 19 +-
Python/esys/lsm/CheckPointParamsPy.h | 8 +-
Python/esys/lsm/ElasticMesh2DPrmsPy.cpp | 19 +-
Python/esys/lsm/ElasticMesh2DPrmsPy.h | 8 +-
Python/esys/lsm/ElasticTriMeshPrmsPy.cpp | 19 +-
Python/esys/lsm/ElasticTriMeshPrmsPy.h | 8 +-
Python/esys/lsm/ExportModuleLsm.cpp | 8 +-
Python/esys/lsm/FieldSaverPrmsPy.cpp | 19 +-
Python/esys/lsm/FieldSaverPrmsPy.h | 8 +-
Python/esys/lsm/InteractionFieldSaverPrmsPy.cpp | 19 +-
Python/esys/lsm/InteractionFieldSaverPrmsPy.h | 8 +-
Python/esys/lsm/InteractionGroupPy.cpp | 19 +-
Python/esys/lsm/InteractionGroupPy.h | 8 +-
Python/esys/lsm/InteractionParamsPy.cpp | 247 +-
Python/esys/lsm/InteractionParamsPy.h | 47 +-
Python/esys/lsm/LmParticleAdder.cpp | 8 +-
Python/esys/lsm/LmParticleAdder.h | 8 +-
Python/esys/lsm/LmParticleAdder.hpp | 8 +-
Python/esys/lsm/Logging.py | 13 +-
Python/esys/lsm/LsmMpiPy.cpp | 416 +-
Python/esys/lsm/LsmMpiPy.h | 34 +-
Python/esys/lsm/Makefile.am | 10 +-
Python/esys/lsm/MeshBuildParamsPy.cpp | 19 +-
Python/esys/lsm/MeshBuildParamsPy.h | 8 +-
Python/esys/lsm/ParticleFieldSaverPrmsPy.cpp | 19 +-
Python/esys/lsm/ParticleFieldSaverPrmsPy.h | 8 +-
Python/esys/lsm/ParticleIdPairPy.cpp | 19 +-
Python/esys/lsm/ParticleIdPairPy.h | 8 +-
Python/esys/lsm/ParticleIdPairSetPy.cpp | 19 +-
Python/esys/lsm/ParticleIdPairSetPy.h | 8 +-
Python/esys/lsm/ParticleIdPairVectorPy.cpp | 19 +-
Python/esys/lsm/ParticleIdPairVectorPy.h | 8 +-
Python/esys/lsm/ParticlePy.cpp | 19 +-
Python/esys/lsm/ParticlePy.h | 8 +-
Python/esys/lsm/RotParticlePy.cpp | 19 +-
Python/esys/lsm/RotParticlePy.h | 8 +-
Python/esys/lsm/RotParticleViPy.cpp | 19 +-
Python/esys/lsm/RotParticleViPy.h | 8 +-
Python/esys/lsm/RotThermalParticlePy.cpp | 19 +-
Python/esys/lsm/RotThermalParticlePy.h | 8 +-
Python/esys/lsm/RunnablePy.cpp | 19 +-
Python/esys/lsm/RunnablePy.h | 8 +-
Python/esys/lsm/SphereBodyPrmsPy.cpp | 78 +
Python/esys/lsm/SphereBodyPrmsPy.h | 53 +
Python/esys/lsm/TriangleFieldSaverPrmsPy.cpp | 19 +-
Python/esys/lsm/TriangleFieldSaverPrmsPy.h | 8 +-
Python/esys/lsm/TriggerPrmsPy.cpp | 19 +-
Python/esys/lsm/TriggerPrmsPy.h | 8 +-
Python/esys/lsm/WallFieldSaverPrmsPy.cpp | 19 +-
Python/esys/lsm/WallFieldSaverPrmsPy.h | 8 +-
Python/esys/lsm/WallPrmsPy.cpp | 19 +-
Python/esys/lsm/WallPrmsPy.h | 8 +-
Python/esys/lsm/__init__.py | 27 +-
Python/esys/lsm/benchmarks/BondedBlock.py | 9 +-
Python/esys/lsm/benchmarks/Gravity.py | 11 +-
Python/esys/lsm/benchmarks/Makefile.am | 8 +-
Python/esys/lsm/benchmarks/Util.py | 40 +-
Python/esys/lsm/benchmarks/__init__.py | 14 +-
Python/esys/lsm/benchmarks/compress/Makefile.am | 8 +-
Python/esys/lsm/benchmarks/compress/__init__.py | 10 +-
Python/esys/lsm/benchmarks/compress/compbench.py | 16 +-
Python/esys/lsm/benchmarks/gouge2d/Makefile.am | 8 +-
Python/esys/lsm/benchmarks/gouge2d/__init__.py | 10 +-
Python/esys/lsm/benchmarks/gouge2d/gouge2dbench.py | 22 +-
Python/esys/lsm/doc/GravityTut.py | 8 +-
Python/esys/lsm/doc/InitialConfigTut.py | 21 +-
Python/esys/lsm/doc/Installation.py | 38 +-
Python/esys/lsm/doc/Makefile.am | 8 +-
Python/esys/lsm/doc/Overview.py | 16 +-
Python/esys/lsm/doc/Util.py | 10 +-
Python/esys/lsm/doc/VisualisationTut.py | 10 +-
Python/esys/lsm/doc/__init__.py | 8 +-
Python/esys/lsm/examples/DisplacementPlotter.py | 22 +-
Python/esys/lsm/examples/Makefile.am | 8 +-
Python/esys/lsm/examples/Wave2d.py | 54 +-
Python/esys/lsm/examples/__init__.py | 26 +-
Python/esys/lsm/examples/simple/Makefile.am | 8 +-
Python/esys/lsm/examples/simple/__init__.py | 10 +-
Python/esys/lsm/examples/simple/compress3d.py | 8 +-
.../esys/lsm/examples/waveprop/FixedLidWaveSim.py | 12 +-
Python/esys/lsm/examples/waveprop/Makefile.am | 8 +-
Python/esys/lsm/examples/waveprop/OptionParser.py | 19 +-
Python/esys/lsm/examples/waveprop/WaveSim.py | 65 +-
Python/esys/lsm/examples/waveprop/__init__.py | 14 +-
Python/esys/lsm/geometry/CubicBlockPy.cpp | 30 +-
Python/esys/lsm/geometry/CubicBlockPy.h | 8 +-
Python/esys/lsm/geometry/DistConnectionsPy.cpp | 24 +-
Python/esys/lsm/geometry/DistConnectionsPy.h | 8 +-
Python/esys/lsm/geometry/ExportModuleGeometry.cpp | 8 +-
Python/esys/lsm/geometry/GougeConfigPrmsPy.cpp | 19 +-
Python/esys/lsm/geometry/GougeConfigPrmsPy.h | 8 +-
Python/esys/lsm/geometry/GougeConfigPy.cpp | 19 +-
Python/esys/lsm/geometry/GougeConfigPy.h | 8 +-
Python/esys/lsm/geometry/GrainCollectionPy.cpp | 19 +-
Python/esys/lsm/geometry/GrainCollectionPy.h | 8 +-
Python/esys/lsm/geometry/GrainPy.cpp | 19 +-
Python/esys/lsm/geometry/GrainPy.h | 8 +-
Python/esys/lsm/geometry/HexagBlockPy.cpp | 19 +-
Python/esys/lsm/geometry/HexagBlockPy.h | 8 +-
Python/esys/lsm/geometry/IteratorPy.cpp | 8 +-
Python/esys/lsm/geometry/IteratorPy.h | 10 +-
Python/esys/lsm/geometry/IteratorPy.hpp | 12 +-
Python/esys/lsm/geometry/Makefile.am | 8 +-
Python/esys/lsm/geometry/MiscPy.cpp | 19 +-
Python/esys/lsm/geometry/MiscPy.h | 8 +-
Python/esys/lsm/geometry/PackerPy.cpp | 19 +-
Python/esys/lsm/geometry/PackerPy.h | 8 +-
Python/esys/lsm/geometry/ParticleCollectionPy.cpp | 19 +-
Python/esys/lsm/geometry/ParticleCollectionPy.h | 8 +-
Python/esys/lsm/geometry/SimpleBlockPy.cpp | 19 +-
Python/esys/lsm/geometry/SimpleBlockPy.h | 8 +-
.../esys/lsm/geometry/SimpleSphereCollectionPy.cpp | 19 +-
.../esys/lsm/geometry/SimpleSphereCollectionPy.h | 8 +-
.../esys/lsm/geometry/SimpleSphereNeighboursPy.cpp | 19 +-
.../esys/lsm/geometry/SimpleSphereNeighboursPy.h | 8 +-
Python/esys/lsm/geometry/SimpleSpherePy.cpp | 19 +-
Python/esys/lsm/geometry/SimpleSpherePy.h | 8 +-
Python/esys/lsm/geometry/SingleParticleGrainGen.py | 8 +-
Python/esys/lsm/geometry/SphericalGrainGen.py | 8 +-
Python/esys/lsm/geometry/TaggedIdConnectionPy.cpp | 19 +-
Python/esys/lsm/geometry/TaggedIdConnectionPy.h | 8 +-
Python/esys/lsm/geometry/__init__.py | 16 +-
.../esys/lsm/sim/ExportModuleWavePropagation.cpp | 8 +-
Python/esys/lsm/sim/Makefile.am | 10 +-
Python/esys/lsm/sim/WavePropagationPy.cpp | 19 +-
Python/esys/lsm/sim/WavePropagationPy.h | 8 +-
Python/esys/lsm/sim/__init__.py | 11 +-
Python/esys/lsm/sim/coupled/DxToVtkConverter.py | 21 +-
.../lsm/sim/coupled/ExportModuleLsmEscript.cpp | 8 +-
Python/esys/lsm/sim/coupled/LsmMpiEscriptPy.cpp | 19 +-
Python/esys/lsm/sim/coupled/LsmMpiEscriptPy.h | 8 +-
Python/esys/lsm/sim/coupled/Makefile.am | 8 +-
Python/esys/lsm/sim/coupled/MeshToVtkConverter.py | 38 +-
Python/esys/lsm/sim/coupled/SimpleGouge.py | 11 +-
Python/esys/lsm/sim/coupled/SimpleGougeConfig.py | 15 +-
Python/esys/lsm/sim/coupled/__init__.py | 14 +-
.../sim/{WavePropagation.py => wavePropagation.py} | 62 +-
Python/esys/lsm/tools/ExportModuleTools.cpp | 8 +-
.../esys/lsm/tools/MacroFrictionCalculatorPy.cpp | 19 +-
Python/esys/lsm/tools/MacroFrictionCalculatorPy.h | 8 +-
Python/esys/lsm/tools/Makefile.am | 8 +-
Python/esys/lsm/tools/__init__.py | 8 +-
Python/esys/lsm/util/BoundingBoxPy.cpp | 19 +-
Python/esys/lsm/util/BoundingBoxPy.h | 8 +-
Python/esys/lsm/util/BoundingSpherePy.cpp | 19 +-
Python/esys/lsm/util/BoundingSpherePy.h | 8 +-
Python/esys/lsm/util/ExportModuleUtil.cpp | 10 +-
Python/esys/lsm/util/FileUtil.py | 8 +-
Python/esys/lsm/util/InstallInfo.tmpl | 20 +-
Python/esys/lsm/util/Makefile.am | 28 +-
Python/esys/lsm/util/OptParse.py | 21 +-
Python/esys/lsm/util/QuaternionPy.cpp | 19 +-
Python/esys/lsm/util/QuaternionPy.h | 8 +-
Python/esys/lsm/util/RngPy.cpp | 23 +-
Python/esys/lsm/util/RngPy.h | 8 +-
Python/esys/lsm/util/SetPy.cpp | 8 +-
Python/esys/lsm/util/SetPy.h | 8 +-
Python/esys/lsm/util/SetPy.hpp | 8 +-
Python/esys/lsm/util/Vec3Py.cpp | 19 +-
Python/esys/lsm/util/Vec3Py.h | 8 +-
Python/esys/lsm/util/VectorPy.cpp | 8 +-
Python/esys/lsm/util/VectorPy.h | 8 +-
Python/esys/lsm/util/VectorPy.hpp | 8 +-
Python/esys/lsm/util/__init__.py | 18 +-
Python/esys/lsm/util/pathSearcher.py | 11 +-
Python/esys/lsm/util/process.py | 67 +-
Python/esys/lsm/vis/Makefile.am | 8 +-
Python/esys/lsm/vis/__init__.py | 14 +-
Python/esys/lsm/vis/core/Makefile.am | 8 +-
Python/esys/lsm/vis/core/__init__.py | 55 +-
Python/esys/lsm/vis/core/arrow.py | 10 +-
Python/esys/lsm/vis/core/arrowExtractor.py | 10 +-
Python/esys/lsm/vis/core/box.py | 8 +-
Python/esys/lsm/vis/core/camera.py | 10 +-
Python/esys/lsm/vis/core/capsule.py | 11 +-
Python/esys/lsm/vis/core/color.py | 17 +-
Python/esys/lsm/vis/core/cone.py | 10 +-
Python/esys/lsm/vis/core/cylinder.py | 11 +-
Python/esys/lsm/vis/core/cylinderExtractor.py | 12 +-
Python/esys/lsm/vis/core/edgeData.py | 10 +-
Python/esys/lsm/vis/core/edgeExtractor.py | 10 +-
Python/esys/lsm/vis/core/exception.py | 17 +-
Python/esys/lsm/vis/core/extractor.py | 8 +-
Python/esys/lsm/vis/core/glyphData.py | 8 +-
Python/esys/lsm/vis/core/imageFormat.py | 35 +-
Python/esys/lsm/vis/core/modifier.py | 12 +-
Python/esys/lsm/vis/core/pointExtractor.py | 10 +-
Python/esys/lsm/vis/core/scene.py | 16 +-
Python/esys/lsm/vis/core/sphere.py | 10 +-
Python/esys/lsm/vis/core/sphereExtractor.py | 12 +-
Python/esys/lsm/vis/core/surfaceData.py | 10 +-
Python/esys/lsm/vis/core/triangulatedSurface.py | 8 +-
Python/esys/lsm/vis/povray/Makefile.am | 8 +-
Python/esys/lsm/vis/povray/__init__.py | 52 +-
Python/esys/lsm/vis/povray/arrow.py | 17 +-
Python/esys/lsm/vis/povray/arrowExtractor.py | 10 +-
Python/esys/lsm/vis/povray/box.py | 10 +-
Python/esys/lsm/vis/povray/camera.py | 22 +-
Python/esys/lsm/vis/povray/capsule.py | 24 +-
Python/esys/lsm/vis/povray/color.py | 19 +-
Python/esys/lsm/vis/povray/cone.py | 12 +-
Python/esys/lsm/vis/povray/csg.py | 10 +-
Python/esys/lsm/vis/povray/cylinder.py | 11 +-
Python/esys/lsm/vis/povray/cylinderExtractor.py | 10 +-
Python/esys/lsm/vis/povray/edgeData.py | 10 +-
Python/esys/lsm/vis/povray/edgeExtractor.py | 20 +-
Python/esys/lsm/vis/povray/glyphData.py | 12 +-
Python/esys/lsm/vis/povray/modifier.py | 20 +-
Python/esys/lsm/vis/povray/object.py | 19 +-
Python/esys/lsm/vis/povray/povRenderer.py | 32 +-
Python/esys/lsm/vis/povray/scene.py | 20 +-
Python/esys/lsm/vis/povray/sphere.py | 10 +-
Python/esys/lsm/vis/povray/sphereExtractor.py | 12 +-
Python/esys/lsm/vis/povray/triangulatedSurface.py | 18 +-
Python/esys/lsm/vis/vtk/Makefile.am | 8 +-
Python/esys/lsm/vis/vtk/__init__.py | 48 +-
Python/esys/lsm/vis/vtk/arrow.py | 13 +-
Python/esys/lsm/vis/vtk/arrowExtractor.py | 10 +-
Python/esys/lsm/vis/vtk/box.py | 10 +-
Python/esys/lsm/vis/vtk/camera.py | 8 +-
Python/esys/lsm/vis/vtk/color.py | 17 +-
Python/esys/lsm/vis/vtk/cone.py | 10 +-
Python/esys/lsm/vis/vtk/cylinder.py | 13 +-
Python/esys/lsm/vis/vtk/cylinderExtractor.py | 10 +-
Python/esys/lsm/vis/vtk/edgeData.py | 9 +-
Python/esys/lsm/vis/vtk/edgeExtractor.py | 12 +-
Python/esys/lsm/vis/vtk/glyphData.py | 8 +-
Python/esys/lsm/vis/vtk/glyphExtractor.py | 37 +-
Python/esys/lsm/vis/vtk/modifier.py | 8 +-
Python/esys/lsm/vis/vtk/pointExtractor.py | 8 +-
Python/esys/lsm/vis/vtk/scene.py | 12 +-
Python/esys/lsm/vis/vtk/sphere.py | 10 +-
Python/esys/lsm/vis/vtk/sphereExtractor.py | 10 +-
Python/esys/lsm/vis/vtk/surfaceData.py | 8 +-
Python/esys/lsm/vis/vtk/triangulatedSurface.py | 10 +-
Python/esys/lsm/vis/vtk/util.py | 9 +-
README | 20 +-
Tools/ExtractFractures/FitPlane.cpp | 8 +-
Tools/ExtractFractures/FitPlane.h | 8 +-
Tools/ExtractFractures/Makefile.am | 8 +-
Tools/ExtractFractures/frac_dist.cpp | 8 +-
Tools/ExtractFractures/frac_dist.h | 8 +-
Tools/ExtractFractures/fracframe.cpp | 12 +-
Tools/ExtractFractures/fracframe.h | 9 +-
Tools/ExtractFractures/fracwriter.cpp | 17 +-
Tools/ExtractFractures/fracwriter.h | 9 +-
Tools/ExtractFractures/main.cpp | 8 +-
Tools/ExtractGrains/Frac.cpp | 8 +-
Tools/ExtractGrains/Frac.h | 8 +-
Tools/ExtractGrains/Makefile.am | 8 +-
Tools/ExtractGrains/Triangle2d.cpp | 8 +-
Tools/ExtractGrains/Triangle2d.h | 8 +-
Tools/ExtractGrains/Tritest.cpp | 8 +-
Tools/ExtractGrains/graph.cpp | 43 +-
Tools/ExtractGrains/graph.h | 10 +-
Tools/ExtractGrains/main.cpp | 41 +-
Tools/ExtractGrains/probdist.cpp | 8 +-
Tools/ExtractGrains/probdist.h | 8 +-
Tools/ExtractGrains/readSnap.cpp | 26 +-
Tools/ExtractGrains/readSnap.h | 16 +-
Tools/ExtractProfile/Makefile.am | 8 +-
Tools/ExtractProfile/main.cpp | 8 +-
Tools/ExtractProfile/read.cpp | 8 +-
Tools/ExtractProfile/read.h | 8 +-
Tools/ExtractStrain/DataExtractor.cpp | 8 +-
Tools/ExtractStrain/DataExtractor.h | 8 +-
Tools/ExtractStrain/DataParticle.cpp | 8 +-
Tools/ExtractStrain/DataParticle.h | 8 +-
Tools/ExtractStrain/Makefile.am | 8 +-
Tools/ExtractStrain/SnapFileHelp.cpp | 8 +-
Tools/ExtractStrain/SnapFileHelp.h | 8 +-
Tools/ExtractStrain/main.cpp | 8 +-
Tools/ForceChains/Makefile.am | 8 +-
Tools/ForceChains/main.cpp | 8 +-
Tools/ForceChains/vtk.cpp | 8 +-
Tools/ForceChains/vtk.h | 8 +-
Tools/ForceChains/vvf.cpp | 8 +-
Tools/ForceChains/vvf.h | 8 +-
.../LinearWindowAverager.cpp | 8 +-
.../MacroFrictionCalculator/LinearWindowAverager.h | 8 +-
.../MacroFrictionCalculator.cpp | 8 +-
.../MacroFrictionCalculator.h | 8 +-
Tools/MacroFrictionCalculator/Main.cpp | 8 +-
Tools/MacroFrictionCalculator/Makefile.am | 8 +-
Tools/MacroFrictionCalculator/WallForceReader.cpp | 8 +-
Tools/MacroFrictionCalculator/WallForceReader.h | 8 +-
.../WallForcesToFrictionConverter.cpp | 8 +-
.../WallForcesToFrictionConverter.h | 8 +-
Tools/Makefile.am | 11 +-
{Python/esys => Tools/MergeLog}/Makefile.am | 15 +-
Tools/MergeLog/mergelog.py | 50 +
Tools/StressCalculator/CartesianGrid.cpp | 8 +-
Tools/StressCalculator/CartesianGrid.h | 8 +-
Tools/StressCalculator/Contact.cpp | 8 +-
Tools/StressCalculator/Contact.h | 8 +-
Tools/StressCalculator/ContactCollection.cpp | 8 +-
Tools/StressCalculator/ContactCollection.h | 8 +-
Tools/StressCalculator/EigenvalueCalculator.cpp | 8 +-
Tools/StressCalculator/EigenvalueCalculator.h | 8 +-
Tools/StressCalculator/GaussianGridder.cpp | 8 +-
Tools/StressCalculator/GaussianGridder.h | 8 +-
.../InteractionToStressConverter.cpp | 8 +-
.../InteractionToStressConverter.h | 8 +-
Tools/StressCalculator/Main.cpp | 8 +-
Tools/StressCalculator/Makefile.am | 9 +-
Tools/StressCalculator/Raw2InteractionReader.cpp | 8 +-
Tools/StressCalculator/Raw2InteractionReader.h | 8 +-
Tools/StressCalculator/StressTensor.h | 8 +-
Tools/StressCalculator/StressTensorCalculator.cpp | 8 +-
Tools/StressCalculator/StressTensorCalculator.h | 8 +-
Tools/StressCalculator/StressTensorCollection.cpp | 8 +-
Tools/StressCalculator/StressTensorCollection.h | 8 +-
Tools/StressCalculator/Vec3Comparer.h | 8 +-
Tools/StressCalculator/VtkDataArray.h | 8 +-
Tools/StressCalculator/VtkDataType.h | 8 +-
Tools/StressCalculator/VtkDataTypeTuple.cpp | 8 +-
Tools/StressCalculator/VtkDataTypeTuple.h | 8 +-
Tools/StressCalculator/VtkPiece.cpp | 8 +-
Tools/StressCalculator/VtkPiece.h | 8 +-
Tools/StressCalculator/VtkStructuredGrid.cpp | 8 +-
Tools/StressCalculator/VtkStructuredGrid.h | 8 +-
Tools/StressCalculator/VtkUnstructuredGrid.cpp | 8 +-
Tools/StressCalculator/VtkUnstructuredGrid.h | 8 +-
Tools/dump2geo/Makefile.am | 8 +-
Tools/dump2geo/frame_geo.cpp | 11 +-
Tools/dump2geo/frame_geo.h | 8 +-
Tools/dump2geo/main.cpp | 8 +-
Tools/dump2pov/Makefile.am | 8 +-
Tools/dump2pov/README | 16 +-
Tools/dump2pov/campos.cpp | 8 +-
Tools/dump2pov/campos.h | 8 +-
Tools/dump2pov/colormap.cpp | 8 +-
Tools/dump2pov/colormap.h | 8 +-
Tools/dump2pov/colormap3.cpp | 8 +-
Tools/dump2pov/colormap3.h | 8 +-
Tools/dump2pov/frame.cpp | 8 +-
Tools/dump2pov/frame.h | 8 +-
Tools/dump2pov/geocolormap.cpp | 8 +-
Tools/dump2pov/geocolormap.h | 8 +-
Tools/dump2pov/main.cpp | 8 +-
Tools/dump2pov/mesh.cpp | 8 +-
Tools/dump2pov/mesh.h | 8 +-
Tools/dump2silo/Makefile.am | 8 +-
Tools/dump2silo/frame_silo.cpp | 8 +-
Tools/dump2silo/frame_silo.h | 8 +-
Tools/dump2silo/main.cpp | 8 +-
Tools/dump2vtk/Makefile.am | 11 +-
Tools/dump2vtk/frame_vtk.cpp | 42 +-
Tools/dump2vtk/frame_vtk.h | 10 +-
Tools/dump2vtk/main.cpp | 15 +-
Tools/mesh2pov/Makefile.am | 8 +-
Tools/mesh2pov/main.cpp | 8 +-
Tools/pfcconvert/Makefile.am | 8 +-
Tools/pfcconvert/main.cpp | 8 +-
Tools/pfcconvert/pfcc.cpp | 8 +-
Tools/pfcconvert/pfcc.h | 8 +-
Tools/rotextract/Makefile.am | 8 +-
Tools/rotextract/gvmap.cpp | 8 +-
Tools/rotextract/gvmap.h | 8 +-
Tools/rotextract/main.cpp | 8 +-
Tools/rotextract/rextract.cpp | 8 +-
Tools/rotextract/rextract.h | 8 +-
Tools/slip2vtk/Makefile.am | 8 +-
Tools/slip2vtk/main.cpp | 8 +-
Tools/slip2vtk/slip2vtk2d.cpp | 8 +-
Tools/slip2vtk/slip2vtk2d.h | 8 +-
autogen.sh | 5 +-
bzrversion.h | 1 -
configure.ac | 58 +-
debian/changelog | 127 +
debian/compat | 2 +-
debian/control | 68 +-
debian/copyright | 210 +-
debian/esys-particle.doc-base.pythonapi | 4 +-
debian/esys-particle.docs | 1 -
debian/patches/01_remove_obsolete_dir.patch | 17 +
debian/patches/02_remove_bzr_version.patch | 43 +
debian/patches/03_ax-boost.patch | 120 +
debian/patches/05_fix_epydoc_timestamp.patch | 18 +
debian/patches/06_fix_FTBFS_gcc6.patch | 18 +
debian/patches/series | 5 +
debian/rules | 27 +-
debian/tests/box30.0.geo | 74509 +++++++++++++++++++
debian/{test/compression.py => tests/build1} | 25 +-
debian/tests/control | 3 +
debian/watch | 6 +-
ntable/Makefile.am | 8 +-
ntable/src/Makefile.am | 8 +-
ntable/src/dslice.cpp | 8 +-
ntable/src/dslice.h | 8 +-
ntable/src/handle.h | 8 +-
ntable/src/handle.hpp | 8 +-
ntable/src/handle_exception.h | 8 +-
ntable/src/nt_block.h | 8 +-
ntable/src/nt_block.hpp | 8 +-
ntable/src/nt_slab.h | 8 +-
ntable/src/nt_slab.hpp | 8 +-
ntable/src/ntable.h | 9 +-
ntable/src/ntable.hpp | 34 +-
ntable/src/ntb_iter.h | 8 +-
ntable/src/ntb_iter.hpp | 8 +-
ntable/src/nts_iter.h | 8 +-
ntable/src/nts_iter.hpp | 8 +-
ntable/test/test_main2.cpp | 8 +-
ntable/util/BasicParticle.cpp | 8 +-
ntable/util/BasicParticle.h | 8 +-
ntable/util/Error.h | 8 +-
ntable/util/vec3.cpp | 8 +-
ntable/util/vec3.h | 8 +-
pis/Makefile.am | 14 +-
pis/mesh2d_pis.h | 11 +-
pis/mesh2d_pis.hpp | 13 +-
pis/mesh2d_pis_eb.h | 8 +-
pis/mesh2d_pis_eb.hpp | 8 +-
pis/mesh2d_pis_ne.h | 8 +-
pis/mesh2d_pis_ne.hpp | 8 +-
pis/pi_storage.cpp | 27 +-
pis/pi_storage.h | 12 +-
pis/pi_storage.hpp | 9 +-
pis/pi_storage_e.h | 8 +-
pis/pi_storage_e.hpp | 25 +-
pis/pi_storage_eb.h | 8 +-
pis/pi_storage_eb.hpp | 8 +-
pis/pi_storage_ed.h | 13 +-
pis/pi_storage_ed.hpp | 69 +-
pis/pi_storage_ed_t.h | 8 +-
pis/pi_storage_ed_t.hpp | 29 +-
pis/pi_storage_ne.h | 13 +-
pis/pi_storage_ne.hpp | 58 +-
pis/pi_storage_ne_t.h | 8 +-
pis/pi_storage_ne_t.hpp | 26 +-
pis/pi_storage_single.h | 8 +-
pis/pi_storage_single.hpp | 8 +-
pis/trimesh_pis.h | 11 +-
pis/trimesh_pis.hpp | 11 +-
pis/trimesh_pis_eb.h | 8 +-
pis/trimesh_pis_eb.hpp | 8 +-
pis/trimesh_pis_ne.h | 8 +-
pis/trimesh_pis_ne.hpp | 8 +-
ppa/Makefile.am | 8 +-
ppa/src/Makefile.am | 8 +-
ppa/src/app_array.cpp | 8 +-
ppa/src/pp_array.h | 10 +-
ppa/src/pp_array.hpp | 8 +-
ppa/test/test.cpp | 8 +-
ppa/util/partpack.cpp | 8 +-
tml/Makefile.am | 8 +-
tml/comm/Makefile.am | 8 +-
tml/comm/cart_comm.cpp | 8 +-
tml/comm/cart_comm.h | 8 +-
tml/comm/cart_comm.hpp | 8 +-
tml/comm/comm.cpp | 8 +-
tml/comm/comm.h | 8 +-
tml/comm/comm.hpp | 8 +-
tml/comm/comm_coll.hpp | 8 +-
tml/comm/comm_world.cpp | 8 +-
tml/comm/comm_world.h | 8 +-
tml/message/Makefile.am | 8 +-
tml/message/message.h | 8 +-
tml/message/multi_message_slab.cpp | 8 +-
tml/message/multi_message_slab.h | 8 +-
tml/message/pack.cpp | 8 +-
tml/message/pack.h | 8 +-
tml/message/pack.hpp | 8 +-
tml/message/packed_message.cpp | 8 +-
tml/message/packed_message.h | 8 +-
tml/message/packed_message_interface.h | 8 +-
tml/message/packed_multi_message.cpp | 8 +-
tml/message/packed_multi_message.h | 8 +-
tml/test/tesp_sc.cpp | 8 +-
tml/test/test.cpp | 8 +-
tml/test/test_cart.cpp | 8 +-
tml/test/test_cart.h | 8 +-
tml/test/test_cart_old.cpp | 8 +-
tml/test/test_comm.cpp | 8 +-
tml/test/test_comm.h | 8 +-
tml/test/test_pack.cpp | 8 +-
tml/test/test_pack.h | 8 +-
tml/test/test_sc.cpp | 8 +-
tml/test/test_sc.h | 8 +-
tml/type/Makefile.am | 8 +-
tml/type/gettype.cpp | 8 +-
tml/type/gettype.h | 8 +-
tml/type/gettype.hpp | 8 +-
1091 files changed, 85690 insertions(+), 34786 deletions(-)
create mode 100644 .gitignore
delete mode 100644 Doc/Deprecated/FileFormat.pdf
delete mode 100644 Doc/Deprecated/FileFormat.ps
delete mode 100644 Doc/Deprecated/FileFormat.tex
delete mode 100644 Doc/Deprecated/FileFormat.txt
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delete mode 100644 Doc/Deprecated/Manual/geo-file.tex
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delete mode 100644 Doc/Deprecated/Manual/userman.tex
delete mode 100644 Doc/Deprecated/Refman/refman.tex
delete mode 100644 Doc/ESyS-Particle_Tutorial.pdf
create mode 100755 Doc/Notes/ESyS-ParticleNotes.tex
create mode 100644 Doc/Notes/Makefile.am
create mode 100755 Doc/Notes/ReportStyle.sty
copy Doc/{Tutorial => Notes}/makeglos.pl (100%)
create mode 100755 Doc/Notes/render.sh
create mode 100644 Doc/Notes/source-files/move_output_files.sh
create mode 100644 Doc/Notes/source-files/out2file.py
create mode 100755 Doc/Notes/source-files/run_esysparticle_test.sh
create mode 100644 Doc/Notes/tex-files/Ch-ESyS-ParticleDefinitions.tex
create mode 100644 Doc/Notes/tex-files/Ch-ESyS-ParticleReleaseBuild.tex
create mode 100644 Doc/Notes/tex-files/Ch-ESyS-ParticleReleaseProblems.tex
create mode 100644 Doc/Notes/tex-files/Ch-ESyS-ParticleReleaseSteps.tex
create mode 100644 Doc/Notes/tex-files/Ch-ESyS-ParticleReleaseTesting.tex
create mode 100644 Doc/Tutorial/cluster_box.jpg
create mode 100644 Doc/Tutorial/examples/cluster_box.py.tex
create mode 100644 Doc/Tutorial/examples/simple_box_compact.py.tex
create mode 100644 Doc/Tutorial/examples/smooth_box_compact.py.tex
create mode 100644 Doc/Tutorial/gengeo.tex
create mode 100644 Doc/Tutorial/gengeo_box.jpg
create mode 100644 Doc/Tutorial/smooth_box.jpg
create mode 100644 Doc/Tutorial/tables/file_format_description.tex
create mode 100644 Foundation/console.hpp
copy Foundation/StringUtil.cpp => Model/ESphereBodyInteraction.cpp (60%)
copy Model/{EWallInteraction.h => ESphereBodyInteraction.h} (53%)
create mode 100644 Model/ESphereBodyInteraction.hpp
create mode 100644 Model/ESphereBodyInteractionGroup.cpp
create mode 100644 Model/ESphereBodyInteractionGroup.h
copy Model/{EWallInteractionGroup.hpp => ESphereBodyInteractionGroup.hpp} (51%)
copy Model/{HertzianViscoElasticFrictionInteraction.cpp => HertzMindlinInteraction.cpp} (62%)
copy Model/{HertzianViscoElasticFrictionInteraction.h => HertzMindlinInteraction.h} (63%)
copy Model/{HertzianViscoElasticFrictionInteraction.cpp => HertzMindlinViscoInteraction.cpp} (62%)
copy Model/{HertzianViscoElasticFrictionInteraction.h => HertzMindlinViscoInteraction.h} (64%)
create mode 100644 Model/SphereBody.cpp
create mode 100644 Model/SphereBody.h
create mode 100644 Model/SphereBodyIG.h
create mode 100644 Model/SphereBodyInteraction.h
copy Model/{WallInteraction.hpp => SphereBodyInteraction.hpp} (58%)
create mode 100644 Model/TaggedEWallInteractionGroup.h
create mode 100644 Model/TaggedEWallInteractionGroup.hpp
create mode 100644 Python/esys/lsm/SphereBodyPrmsPy.cpp
create mode 100644 Python/esys/lsm/SphereBodyPrmsPy.h
rename Python/esys/lsm/sim/{WavePropagation.py => wavePropagation.py} (94%)
copy {Python/esys => Tools/MergeLog}/Makefile.am (61%)
create mode 100644 Tools/MergeLog/mergelog.py
delete mode 100644 bzrversion.h
create mode 100644 debian/patches/01_remove_obsolete_dir.patch
create mode 100644 debian/patches/02_remove_bzr_version.patch
create mode 100644 debian/patches/03_ax-boost.patch
create mode 100644 debian/patches/05_fix_epydoc_timestamp.patch
create mode 100644 debian/patches/06_fix_FTBFS_gcc6.patch
create mode 100644 debian/patches/series
create mode 100644 debian/tests/box30.0.geo
copy debian/{test/compression.py => tests/build1} (91%)
create mode 100644 debian/tests/control
--
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