[normaliz] branch master updated (bf71660 -> 516fed1)
Jerome Benoit
calculus-guest at moszumanska.debian.org
Wed Nov 15 06:27:30 UTC 2017
This is an automated email from the git hooks/post-receive script.
calculus-guest pushed a change to branch master
in repository normaliz.
from bf71660 Debian patch 3.1.1+ds-1
new 3ca65aa Imported Debian pre-patch 3.4.1+ds-0
new 1365894 New upstream version 3.4.1
new 20f15b4 Merge tag 'upstream/3.4.1'
new 911c22f New upstream version 3.4.1+ds
new b252e3e Merge tag 'upstream/3.4.1+ds'
new 516fed1 Imported Debian patch 3.4.1+ds-1
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CHANGELOG | 52 +
Macaulay2/INSTALL | 32 -
Macaulay2/Normaliz.m2 | 2392 -
Makefile.am | 35 +
PyNormaliz/.gitignore | 7 +
PyNormaliz/.travis-install.sh | 21 +
PyNormaliz/.travis-test.sh | 10 +
PyNormaliz/.travis.yml | 25 +
PyNormaliz/COPYING | 15 +
PyNormaliz/GPLv2 | 339 +
PyNormaliz/MANIFEST.in | 5 +
PyNormaliz/Makefile | 18 +
PyNormaliz/NormalizModule.cpp | 1376 +
PyNormaliz/PyNormaliz.py | 521 +
PyNormaliz/Readme.md | 92 +
PyNormaliz/doc/PyNormaliz_Tutorial.ipynb | 729 +
PyNormaliz/doc/PyNormaliz_Tutorial.pdf | Bin 0 -> 137933 bytes
PyNormaliz/examples/first.py | 19 +
PyNormaliz/examples/first_long.py | 19 +
PyNormaliz/examples/simple.py | 11 +
PyNormaliz/setup.cfg | 2 +
PyNormaliz/setup.py | 25 +
Qexample/2equations.in | 5 +
Qexample/2x2.in | 5 +
{example => Qexample}/3x3magic.in | 4 +-
example/3x3magic.in => Qexample/3x3magiceven.in | 8 +-
{example => Qexample}/3x3magiceven_lat.in | 0
{example => Qexample}/3x3magiceven_sat.in | 0
Qexample/4x4.in | 14 +
{example => Qexample}/5x5.in | 3 +-
{example => Qexample}/5x5dual.in | 0
Qexample/A443.in | 51 +
Qexample/A543.in | 63 +
Qexample/Condorcet.in | 7 +
Qexample/InhomIneq_7.in | 9 +
Qexample/InhomIneq_gen.in | 7 +
Qexample/Makefile.am | 25 +
{example => Qexample}/bo5.in | 0
{example => Qexample}/cut_poly_7.in | 0
Qexample/cyclicpolytope30-15.in | 35 +
{example => Qexample}/gen_inhom_nonpointed.in | 0
{example => Qexample}/max_polytope_cand.in | 0
{example => Qexample}/medium.in | 0
{example => Qexample}/rational.in | 0
{test/test-hh => Qexample}/small.in | 0
{example => Qexample}/strict_sign.in | 0
{example => Qexample}/subspace4.in | 0
{source => Qsource}/CMakeLists.txt | 121 +-
Qsource/LibQnormalizConfig.cmake.in | 38 +
Qsource/Makefile.am | 51 +
Qsource/Makefile.classic | 46 +
{source => Qsource}/Makefile.configuration | 18 +-
source/Input.cpp => Qsource/Qinput.cpp | 204 +-
source/Normaliz.cpp => Qsource/Qnormaliz.cpp | 135 +-
source/Normaliz.h => Qsource/Qnormaliz.h | 6 +-
source/Options.cpp => Qsource/Qoptions.cpp | 207 +-
source/Options.h => Qsource/Qoptions.h | 34 +-
Qsource/Qoutput.cpp | 619 +
source/output.h => Qsource/Qoutput.h | 28 +-
Qsource/UseLibQnormaliz.cmake | 13 +
Qsource/cmake/Modules/FindCOCOA.cmake | 52 +
{source => Qsource}/cmake/Modules/FindGMP.cmake | 0
{source => Qsource}/cmake/Modules/FindGMPXX.cmake | 0
.../cmake/Modules/FindMIC_GMP.cmake | 0
.../cmake/Modules/FindMIC_GMPXX.cmake | 0
Qsource/cmake/Modules/FindNAUTY.cmake | 58 +
{source => Qsource}/cmake/Modules/FindSCIP.cmake | 4 +-
Qsource/cmake/detect_features.cmake | 35 +
Qsource/libQnormaliz/CMakeLists.txt | 51 +
Qsource/libQnormaliz/Makefile.classic | 42 +
Qsource/libQnormaliz/Qcone.cpp | 1652 +
.../cone.h => Qsource/libQnormaliz/Qcone.h | 276 +-
.../libQnormaliz/Qcone_helper.cpp | 6 +-
.../libQnormaliz/Qcone_helper.h | 33 +-
.../libQnormaliz/Qcone_property.cpp | 135 +-
.../libQnormaliz/Qcone_property.h | 83 +-
Qsource/libQnormaliz/Qconvert.h | 66 +
.../libQnormaliz/Qfull_cone.cpp | 2751 +-
.../libQnormaliz/Qfull_cone.h | 231 +-
.../general.h => Qsource/libQnormaliz/Qgeneral.h | 12 +-
Qsource/libQnormaliz/Qinteger.cpp | 102 +
.../integer.h => Qsource/libQnormaliz/Qinteger.h | 102 +-
.../libQnormaliz/Qlibnormaliz.cpp | 8 +-
.../libQnormaliz/Qlist_operations.cpp | 44 +-
.../libQnormaliz/Qlist_operations.h | 22 +-
.../libQnormaliz/Qmap_operations.h | 72 +-
.../matrix.cpp => Qsource/libQnormaliz/Qmatrix.cpp | 1202 +-
.../matrix.h => Qsource/libQnormaliz/Qmatrix.h | 205 +-
.../my_omp.h => Qsource/libQnormaliz/Qmy_omp.h | 0
.../libQnormaliz/Qnormaliz_exception.h | 10 +-
.../libQnormaliz/Qsublattice_representation.cpp | 383 +
Qsource/libQnormaliz/Qsublattice_representation.h | 227 +
Qsource/libQnormaliz/Qvector_operations.cpp | 433 +
.../libQnormaliz/Qvector_operations.h | 123 +-
Qsource/libQnormaliz/Qversion.h | 18 +
Qsource/libQnormaliz/Qversion.h.in | 18 +
.../libQnormaliz/libQnormaliz-templated.cpp | 31 +-
.../libQnormaliz/libQnormaliz.h | 6 +-
Qtest/Makefile.am | 60 +
Qtest/Makefile.classic | 34 +
Qtest/test-s/2equations.in | 5 +
Qtest/test-s/2equations.ref | 58 +
Qtest/test-s/2x2.in | 5 +
Qtest/test-s/2x2.ref | 24 +
{example => Qtest/test-s}/3x3magic.in | 4 +-
Qtest/test-s/3x3magic.ref | 33 +
Qtest/test-s/4x4.in | 14 +
test/test-mm/4x4gen.ref => Qtest/test-s/4x4.ref | 49 +-
{example => Qtest/test-s}/5x5.in | 3 +-
Qtest/test-s/5x5.ref | 2006 +
{example => Qtest/test-s}/5x5dual.in | 4 +-
Qtest/test-s/5x5dual.ref | 2006 +
Qtest/test-s/A443.in | 51 +
Qtest/test-s/A443.ref | 5052 +
Qtest/test-s/Condorcet.in | 7 +
Qtest/test-s/Condorcet.ref | 273 +
Qtest/test-s/InhomIneq_7.in | 9 +
Qtest/test-s/InhomIneq_7.ref | 25 +
Qtest/test-s/InhomIneq_gen.in | 7 +
Qtest/test-s/InhomIneq_gen.ref | 25 +
{example => Qtest/test-s}/bo5.in | 0
Qtest/test-s/bo5.ref | 402 +
{example => Qtest/test-s}/cut_poly_7.in | 0
Qtest/test-s/cut_poly_7.ref | 4142 +
{example => Qtest/test-s}/gen_inhom_nonpointed.in | 0
.../test-s/gen_inhom_nonpointed.ref | 26 +-
{example => Qtest/test-s}/max_polytope_cand.in | 4 +-
Qtest/test-s/max_polytope_cand.ref | 47 +
Qtest/test-s/medium.in | 43 +
{test/test-r1 => Qtest/test-s}/medium.ref | 54 -
{example => Qtest/test-s}/rational.in | 4 +-
Qtest/test-s/rational.ref | 18 +
{example => Qtest/test-s}/small.in | 0
.../small.IntHull.ref => Qtest/test-s/small.ref | 16 +-
{example => Qtest/test-s}/strict_sign.in | 0
Qtest/test-s/strict_sign.ref | 27 +
{example => Qtest/test-s}/subspace4.in | 0
Qtest/test-s/subspace4.ref | 21 +
README.md | 173 +
Singular/INSTALL | 38 -
Singular/normaliz.lib | 1765 -
configure.ac | 208 +
debian/adhoc/Makefile | 4 +-
debian/changelog | 19 +
debian/clean | 5 -
debian/compat | 2 +-
debian/control | 38 +-
debian/copyright | 25 +-
...mmon.install => libnormaliz-dev-common.install} | 0
...rmaliz0-dev.install => libnormaliz-dev.install} | 0
debian/libnormaliz0.lintian-overrides | 2 -
.../{libnormaliz0.install => libnormaliz3.install} | 0
debian/libnormaliz3.lintian-overrides | 5 +
debian/normaliz-doc.doc-base | 7 +-
debian/normaliz-doc.docs | 2 +-
debian/patches/debianization-documentation.patch | 41 -
debian/patches/debianization.patch | 97 +-
debian/patches/series | 1 -
debian/rules | 36 +-
debian/source/lintian-overrides | 2 +-
debian/watch | 6 +-
doc/NmzIntegrate.tex | 785 -
doc/Normaliz.pdf | Bin 0 -> 714377 bytes
doc/Normaliz.tex | 5820 -
doc/jNormaliz.jpg | Bin 80470 -> 0 bytes
example/3x3magic.in | 2 +-
example/3x3magiceven.in | 13 +-
example/5x5.in | 2 +
example/{5x5.in => 5x5Gorenstein.in} | 1 +
example/5x5dual.in | 2 +-
example/6x6.in | 2 +
example/ChF_16_1048576.in | 35 +
example/ChF_2_64.in | 7 +
example/ChF_8_1024.in | 20 +
example/CondEffPlurHilbBas.in | 25197 -----
example/CondEffPlurSemi.in | 11 -
example/CondEffPlurSymm.in | 11 -
example/CondEffPlurSymm.pnm | 7 -
example/CondEffPlurSymmSemi.in | 11 -
example/Condorcet.symm.in | 11 +
example/CondorcetN.in | 10 +
example/CondorcetSymm.in | 9 -
example/CondorcetSymm.pnm | 17 -
example/CondorcetSymmSemi.in | 9 -
example/InhomCong.in | 6 +-
example/InhomIneq.in | 6 +-
example/Makefile.am | 84 +
example/NumSemi.in | 4 +-
example/PluralityVsCutoffSemi.in | 9 -
example/PluralityVsCutoffSymm.in | 9 -
example/PluralityVsCutoffSymm.pnm | 7 -
example/PluralityVsCutoffSymmSemi.in | 9 -
{test/test-1 => example}/hickerson-16.in | 0
example/hickerson-18plus1.in | 19 +
example/j46.pnm | 7 -
example/j462.in | 8 +
example/knapsack_11_60.in | 12 +
example/max_polytope_cand.in | 1 -
example/no_open_facet.in | 7 +
example/open_facet.in | 9 +
example/pedro2.in | 3 +
example/rational.in | 10 +-
example/rational.pnm | 1 -
example/small.in | 2 +
example/strictBorda.in | 19 +
source/CMakeLists.txt | 65 +-
source/INSTALL | 362 +-
source/Makefile | 47 -
source/Makefile.am | 76 +
source/Makefile.classic | 57 +
source/Makefile.configuration | 22 +-
source/cmake/Modules/FindCOCOA.cmake | 52 +
source/cmake/Modules/FindNAUTY.cmake | 58 +
source/cmake/Modules/FindSCIP.cmake | 4 +-
source/genEhrhart/INSTALL | 18 -
source/genEhrhart/Makefile | 28 -
source/genEhrhart/cyclRatFunct.C | 231 -
source/genEhrhart/genEhrhart.C | 693 -
source/genEhrhart/nmzIntInput.C | 469 -
source/genEhrhart/nmzIntegral.C | 332 -
source/genEhrhart/nmzIntegrate.C | 330 -
source/{Input.cpp => input.cpp} | 417 +-
source/libnormaliz/CMakeLists.txt | 12 +-
source/libnormaliz/HilbertSeries.cpp | 446 +-
source/libnormaliz/HilbertSeries.h | 95 +-
source/libnormaliz/HilbertSeriesTest.cpp | 65 -
source/libnormaliz/LibnormalizConfig.cmake | 10 +-
source/libnormaliz/{Makefile => Makefile.classic} | 22 +-
source/libnormaliz/README | 7 +
source/libnormaliz/bottom.cpp | 588 +-
source/libnormaliz/bottom.h | 2 +-
source/libnormaliz/bottom_gen.in | 11 -
source/libnormaliz/cone.cpp | 1987 +-
source/libnormaliz/cone.h | 212 +-
source/libnormaliz/cone_dual_mode.cpp | 102 +-
source/libnormaliz/cone_dual_mode.h | 2 +-
source/libnormaliz/cone_helper.cpp | 802 +-
source/libnormaliz/cone_helper.h | 75 +
source/libnormaliz/cone_property.cpp | 226 +-
source/libnormaliz/cone_property.h | 97 +-
source/libnormaliz/full_cone.cpp | 1320 +-
source/libnormaliz/full_cone.h | 67 +-
source/libnormaliz/general.h | 2 +
source/libnormaliz/integer.cpp | 157 +-
source/libnormaliz/integer.h | 47 +-
source/libnormaliz/libnormaliz-impl.cpp | 60 -
source/libnormaliz/libnormaliz-templated.cpp | 4 +-
source/libnormaliz/libnormaliz.cpp | 27 +-
source/libnormaliz/libnormaliz.h | 25 +-
source/libnormaliz/list_operations.cpp | 4 +-
source/libnormaliz/list_operations.h | 35 +
source/libnormaliz/matrix.cpp | 471 +-
source/libnormaliz/matrix.h | 54 +-
source/libnormaliz/my_omp.h | 9 +
source/libnormaliz/nmz_integral.cpp | 1103 +
.../nmz_integrate.cpp} | 15 +-
source/libnormaliz/nmz_integrate.h | 139 +
.../nmz_polynomial.cpp} | 426 +-
source/libnormaliz/normaliz_exception.h | 41 +-
source/libnormaliz/offload_handler.cpp | 114 +-
source/libnormaliz/reduction.cpp | 27 +-
source/libnormaliz/simplex.cpp | 188 +-
source/libnormaliz/simplex.h | 5 +-
source/libnormaliz/sublattice_representation.cpp | 24 +-
source/libnormaliz/sublattice_representation.h | 63 +
source/libnormaliz/vector_operations.cpp | 342 +-
source/libnormaliz/vector_operations.h | 57 +-
source/maxsimplex/CMakeLists.txt | 23 +
source/maxsimplex/Makefile | 60 -
source/maxsimplex/Makefile.classic | 24 +
source/maxsimplex/maxsimplex.cpp | 6 +
source/{Normaliz.cpp => normaliz.cpp} | 266 +-
source/{Normaliz.h => normaliz.h} | 0
source/{Options.cpp => options.cpp} | 246 +-
source/{Options.h => options.h} | 38 +-
source/outerpar/Makefile.classic | 24 +
source/outerpar/outerpar.cpp | 52 +
.../small.in => source/outerpar/small_gens.mat | 4 +-
source/output.cpp | 257 +-
source/output.h | 6 +
test/Makefile.am | 1106 +
test/{Makefile => Makefile.classic} | 7 +-
test/test-/23.in | 2 +-
test/test-/23.ref | 2 +
test/test-/3x3_sign.in | 6 +-
test/test-/3x3_sign.ref | 2 +
test/test-/3x3_sign2.ref | 2 +
test/test-/4x4.ref | 2 +
test/test-/4x4gen.ref | 2 +
example/5x5.in => test/test-/5x5PF.in | 3 +
test/test-/5x5PF.ref | 98 +
test/test-/ChF_8_1024.in | 20 +
test/test-/ChF_8_1024.ref | 1104 +
test/test-/ChF_8_1024P.in | 20 +
test/test-/ChF_8_1024P.ref | 1104 +
test/test-/InhomIneqSymb.in | 8 +
test/test-/InhomIneqSymb.ref | 59 +
test/test-/Thierry.in | 6 +
test/test-/Thierry.ref | 3695 +
test/test-/ThierryApproximate.in | 7 +
test/test-/ThierryApproximate.ref | 3695 +
test/test-/ThierryNoProjection.in | 8 +
test/test-/ThierryNoProjection.ref | 3695 +
test/test-/ThierryPF.in | 7 +
test/test-/ThierryPF.ref | 3695 +
test/test-/binom.ref | 2 +
test/test-/direct_overflow.ref | 2 +
test/test-/direct_overflow_dual.ref | 2 +
test/test-/dual_not_full_dim.ref | 2 +
test/test-/empty_polyhedron2.ref | 2 +
test/test-/fullspace.ref | 2 +
test/test-/fullspacehyp.ref | 2 +
test/test-/gen_nonpointed.ref | 2 +
test/test-/halfspace2.ref | 2 +
test/test-/halfspace3inhom.ref | 2 +
test/test-/hickerson-16plus1.in | 14 +
test/test-/hickerson-16plus1.ref | 32918 ++++++
test/test-/intcl1.ref | 2 +
test/test-/knapsack_11_60_test2.in | 13 +-
test/test-/knapsack_11_60_test2.ref | 14 +-
test/test-/latt_id_nonpointed.ref | 2 +
test/test-/lattice_ideal.ref | 2 +
test/test-/lowrank.ref | 2 +
test/test-/lowrankPF.in | 20 +
test/{test-1/lowrank.ref => test-/lowrankPF.ref} | 3 -
test/test-/normface.ref | 2 +
test/test-/notpointed.ref | 2 +
test/test-/polyhedron.ref | 2 +
test/test-/rp2poly.ref | 2 +
test/test-/simple_grading.ref | 2 +
test/test-/small-sh.in | 8 +-
test/test-/small.in | 7 +-
test/{test-mm/small_inhom.in => test-/smallPF.in} | 5 +-
test/{test-hh/small.ref => test-/smallPF.ref} | 3 -
test/test-/strict.in | 7 +
test/test-/strict.ref | 62 +
test/test-/strip2.ref | 2 +
test/test-/subspace4.ref | 2 +
test/test-/test22dual.ref | 2 +
test/test-/zero3.ref | 2 +
test/test-/zero4.ref | 2 +
test/test-/zero_polyhedron.ref | 2 +
test/test-1/3x3magic.ref | 3 -
test/test-1/Fact_wrt_dual_error_hom.ref | 3 -
test/test-1/cross2.in | 2 +-
test/test-1/cross2.ref | 3 -
test/test-1/cut.in | 2 +-
test/test-1/cut.ref | 3 -
test/test-1/direct_overflow.ref | 3 -
test/test-1/dual.in | 2 +-
test/test-1/dual.ref | 3 -
test/test-1/dual_not_full_dim.ref | 3 -
test/test-1/dupl_remove.ref | 3 -
test/test-1/fullspace.ref | 2 +
test/test-1/fullspacehyp.ref | 2 +
test/test-1/hickerson-16.in | 2 +-
test/test-1/hickerson-16.ref | 3 -
test/test-1/latt_id_nonpointed.ref | 3 -
test/test-1/lattice_ideal.ref | 3 -
test/test-1/lowrank.ref | 3 -
test/test-1/medium.ref | 3 -
test/test-1/mode45.ref | 3 -
test/test-1/mode456.ref | 3 -
test/test-1/polytop.ref | 3 -
test/test-1/rafa2416.ref | 3 -
test/test-1/rees.ref | 3 -
test/test-1/rees_mini.ref | 3 -
test/test-1/rp2poly.ref | 3 -
test/test-1/rproj2.ref | 3 -
test/test-1/small.in | 7 +-
test/test-1/small.ref | 3 -
test/test-1/squaref0.in | 2 +-
test/test-1/squaref0.ref | 3 -
test/test-1/squaref1.ref | 3 -
test/test-1/zero4.ref | 2 +
test/test-Int/Condorcet-q.in | 9 +
test/test-Int/Condorcet-q.ref | 301 +
.../Condorcet.in => test/test-Int/Condorcet-v.in | 0
test/test-Int/Condorcet-v.ref | 282 +
.../test-Int/CondorcetSemi-q.in | 0
test/test-Int/CondorcetSemi-q.ref | 303 +
test/test-Int/j462.in | 25 +
test/test-Int/j462.ref | 49 +
test/test-Int/rational-E.in | 12 +
test/test-Int/rational-E.ref | 69 +
example/rational.in => test/test-Int/rational-I.in | 6 +-
test/test-Int/rational-I.ref | 33 +
example/rational.in => test/test-Int/rational-L.in | 6 +-
test/test-Int/rational-L.ref | 33 +
test/test-Int/zero-E.in | 7 +
test/{test-1/zero4.ref => test-Int/zero-E.ref} | 30 +-
test/test-Int/zero-I.in | 7 +
test/{test-/zero4.ref => test-Int/zero-I.ref} | 14 +-
test/test-Int/zero-L.in | 7 +
test/{test-/zero4.ref => test-Int/zero-L.ref} | 14 +-
test/test-d/dual-inhom-not-pointed.ref | 2 +-
test/test-d/fullspace.ref | 2 +
test/test-d/fullspacehyp.ref | 2 +
test/test-d/zero4.ref | 2 +
test/test-d1/fullspace.ref | 2 +
test/test-d1/fullspacehyp.ref | 2 +
test/test-d1/zero4.ref | 2 +
test/test-h/3x3_sign.ref | 2 +
test/test-h/3x3_sign2.ref | 2 +
test/test-h/4x4.ref | 2 +
test/test-h/4x4gen.ref | 2 +
test/test-h/binom.ref | 2 +
test/test-h/direct_overflow.ref | 2 +
test/test-h/dual_not_full_dim.ref | 2 +
test/test-h/gen_nonpointed.ref | 2 +
test/test-h/halfspace2.ref | 2 +
test/test-h/halfspace3inhom.ref | 2 +
test/test-h/latt_id_nonpointed.ref | 2 +
test/test-h/lattice_ideal.ref | 2 +
test/test-h/lowrank.ref | 2 +
test/test-h/normface.ref | 2 +
test/test-h/notpointed.ref | 2 +
test/test-h/rp2poly.ref | 2 +
test/test-h/simple_grading.ref | 2 +
test/test-h/small.in | 7 +-
test/test-h/strip2.ref | 2 +
test/test-h/test22dual.ref | 2 +
test/test-h/zero4.ref | 2 +
test/test-hh/direct_overflow.ref | 3 -
test/test-hh/fullspace.IntHull.ref | 11 +-
test/test-hh/fullspace.ref | 2 +
test/test-hh/fullspacehyp.IntHull.ref | 11 +-
test/test-hh/fullspacehyp.ref | 2 +
test/test-hh/halfspace3inhom.IntHull.ref | 14 +-
test/test-hh/no_int_point.IntHull.ref | 2 -
test/test-hh/no_int_point.ref | 4 +-
test/test-hh/strip2.IntHull.ref | 15 +-
test/test-hh/strip2.ref | 11 -
test/test-mm/4x4gen.in | 10 +-
test/test-mm/4x4gen.ref | 4 +
test/test-mm/fullspace.ref | 2 +
test/test-mm/no_open_facet.in | 7 +
test/test-mm/no_open_facet.ref | 52 +
test/test-mm/open_facet.in | 9 +
test/test-mm/open_facet.ref | 51 +
test/test-mm/small.ref | 102807 -----------------
test/test-mm/small_inhom.ref | 102810 ------------------
test/test-n/inhom_triangle.ref | 13 -
test/test-n/strip2.ref | 11 -
test/test-nn/fullspace.ref | 2 +
test/test-nn/fullspacehyp.ref | 2 +
test/test-nn/small-sh.in | 8 +-
test/test-nn/small.in | 7 +-
test/test-nn/strip2.ref | 11 -
test/test-nn/zero4.ref | 2 +
test/test-p/binom.ref | 2 +
test/test-p/bugHpoly.ref | 2 +
test/test-p/direct_overflow.ref | 2 +
test/test-p/dual_not_full_dim.ref | 2 +
test/test-p/gen_nonpointed.ref | 2 +
test/test-p/halfspace2.ref | 2 +
test/test-p/hickerson-16.ref | 4 +-
test/test-p/knapsack_11_60_test2.in | 2 +-
test/test-p/latt_id_nonpointed.ref | 2 +
test/test-p/lattice_ideal.ref | 2 +
test/test-p/lowrank.ref | 2 +
test/test-p/notpointed.ref | 2 +
test/test-p/rp2poly.ref | 2 +
test/test-p/rproj2.in | 2 +-
test/test-p/small.in | 7 +-
test/test-p/zero4.ref | 2 +
test/test-q/bugHpoly.ref | 2 +
test/test-q/direct_overflow.ref | 2 +
test/test-q/dual_not_full_dim.ref | 2 +
test/test-q/fullspace.ref | 2 +
test/test-q/fullspacehyp.ref | 2 +
test/test-q/gen_nonpointed.ref | 2 +
test/test-q/halfspace2.ref | 2 +
test/test-q/halfspace3inhom.ref | 2 +
test/test-q/hickerson-16.ref | 4 +-
test/test-q/inhom_triangle.ref | 9 -
test/test-q/latt_id_nonpointed.ref | 2 +
test/test-q/lattice_ideal.ref | 2 +
test/test-q/lowrank.ref | 2 +
test/test-q/notpointed.ref | 2 +
test/test-q/rp2poly.ref | 2 +
test/test-q/strip2.ref | 10 +-
test/test-q/subspace4.ref | 2 +
test/test-q/zero4.ref | 2 +
test/test-r1/cross2.ref | 3 -
test/test-r1/cut.ref | 3 -
test/test-r1/direct_overflow.ref | 3 -
test/test-r1/dual.ref | 3 -
test/test-r1/dual_not_full_dim.ref | 3 -
test/test-r1/dupl_remove.ref | 3 -
test/test-r1/hyperplanes-not-pointed.ref | 3 -
test/test-r1/lowrank.ref | 3 -
test/test-r1/medium.ref | 3 -
test/test-r1/polytop.ref | 3 -
test/test-r1/rees.ref | 3 -
test/test-r1/rees_mini.ref | 3 -
test/test-r1/rproj2.ref | 3 -
test/test-r1/small.in | 7 +-
test/test-r1/small.ref | 3 -
test/test-r1/zero4.ref | 2 +
test/test-s/23.in | 2 +-
test/test-s/ChineseRemainder.ref | 2 +
test/test-s/dehomogenization.ref | 2 +
test/test-s/fullspace.ref | 2 +
test/test-s/small-sh.in | 8 +-
test/test-s/small.in | 8 +-
test/test-s/strip2.ref | 2 +
test/test-s/zero4.ref | 2 +
test/test-v/fullspace.ref | 2 +
test/test-v/fullspacehyp.ref | 2 +
test/test-v/inhom_triangle.ref | 3 -
test/test-v/strip2.ref | 3 -
test/test-v/zero4.ref | 2 +
513 files changed, 87563 insertions(+), 250441 deletions(-)
delete mode 100644 Macaulay2/INSTALL
delete mode 100644 Macaulay2/Normaliz.m2
create mode 100644 Makefile.am
create mode 100644 PyNormaliz/.gitignore
create mode 100755 PyNormaliz/.travis-install.sh
create mode 100755 PyNormaliz/.travis-test.sh
create mode 100644 PyNormaliz/.travis.yml
create mode 100644 PyNormaliz/COPYING
create mode 100644 PyNormaliz/GPLv2
create mode 100644 PyNormaliz/MANIFEST.in
create mode 100644 PyNormaliz/Makefile
create mode 100644 PyNormaliz/NormalizModule.cpp
create mode 100644 PyNormaliz/PyNormaliz.py
create mode 100644 PyNormaliz/Readme.md
create mode 100644 PyNormaliz/doc/PyNormaliz_Tutorial.ipynb
create mode 100644 PyNormaliz/doc/PyNormaliz_Tutorial.pdf
create mode 100644 PyNormaliz/examples/first.py
create mode 100644 PyNormaliz/examples/first_long.py
create mode 100644 PyNormaliz/examples/simple.py
create mode 100644 PyNormaliz/setup.cfg
create mode 100755 PyNormaliz/setup.py
create mode 100644 Qexample/2equations.in
create mode 100644 Qexample/2x2.in
copy {example => Qexample}/3x3magic.in (88%)
copy example/3x3magic.in => Qexample/3x3magiceven.in (71%)
copy {example => Qexample}/3x3magiceven_lat.in (100%)
copy {example => Qexample}/3x3magiceven_sat.in (100%)
create mode 100644 Qexample/4x4.in
copy {example => Qexample}/5x5.in (93%)
copy {example => Qexample}/5x5dual.in (100%)
create mode 100644 Qexample/A443.in
create mode 100644 Qexample/A543.in
create mode 100644 Qexample/Condorcet.in
create mode 100644 Qexample/InhomIneq_7.in
create mode 100644 Qexample/InhomIneq_gen.in
create mode 100644 Qexample/Makefile.am
copy {example => Qexample}/bo5.in (100%)
copy {example => Qexample}/cut_poly_7.in (100%)
create mode 100644 Qexample/cyclicpolytope30-15.in
copy {example => Qexample}/gen_inhom_nonpointed.in (100%)
copy {example => Qexample}/max_polytope_cand.in (100%)
copy {example => Qexample}/medium.in (100%)
copy {example => Qexample}/rational.in (100%)
rename {test/test-hh => Qexample}/small.in (100%)
copy {example => Qexample}/strict_sign.in (100%)
copy {example => Qexample}/subspace4.in (100%)
copy {source => Qsource}/CMakeLists.txt (64%)
create mode 100644 Qsource/LibQnormalizConfig.cmake.in
create mode 100644 Qsource/Makefile.am
create mode 100644 Qsource/Makefile.classic
copy {source => Qsource}/Makefile.configuration (69%)
copy source/Input.cpp => Qsource/Qinput.cpp (72%)
copy source/Normaliz.cpp => Qsource/Qnormaliz.cpp (57%)
copy source/Normaliz.h => Qsource/Qnormaliz.h (93%)
copy source/Options.cpp => Qsource/Qoptions.cpp (68%)
copy source/Options.h => Qsource/Qoptions.h (82%)
create mode 100644 Qsource/Qoutput.cpp
copy source/output.h => Qsource/Qoutput.h (82%)
create mode 100644 Qsource/UseLibQnormaliz.cmake
create mode 100644 Qsource/cmake/Modules/FindCOCOA.cmake
copy {source => Qsource}/cmake/Modules/FindGMP.cmake (100%)
copy {source => Qsource}/cmake/Modules/FindGMPXX.cmake (100%)
copy {source => Qsource}/cmake/Modules/FindMIC_GMP.cmake (100%)
copy {source => Qsource}/cmake/Modules/FindMIC_GMPXX.cmake (100%)
create mode 100644 Qsource/cmake/Modules/FindNAUTY.cmake
copy {source => Qsource}/cmake/Modules/FindSCIP.cmake (85%)
create mode 100644 Qsource/cmake/detect_features.cmake
create mode 100644 Qsource/libQnormaliz/CMakeLists.txt
create mode 100644 Qsource/libQnormaliz/Makefile.classic
create mode 100644 Qsource/libQnormaliz/Qcone.cpp
copy source/libnormaliz/cone.h => Qsource/libQnormaliz/Qcone.h (53%)
copy source/libnormaliz/cone_helper.cpp => Qsource/libQnormaliz/Qcone_helper.cpp (96%)
rename source/libnormaliz/libnormaliz-all.cpp => Qsource/libQnormaliz/Qcone_helper.h (63%)
copy source/libnormaliz/cone_property.cpp => Qsource/libQnormaliz/Qcone_property.cpp (69%)
copy source/libnormaliz/cone_property.h => Qsource/libQnormaliz/Qcone_property.h (77%)
create mode 100644 Qsource/libQnormaliz/Qconvert.h
copy source/libnormaliz/full_cone.cpp => Qsource/libQnormaliz/Qfull_cone.cpp (53%)
copy source/libnormaliz/full_cone.h => Qsource/libQnormaliz/Qfull_cone.h (59%)
copy source/libnormaliz/general.h => Qsource/libQnormaliz/Qgeneral.h (87%)
create mode 100644 Qsource/libQnormaliz/Qinteger.cpp
copy source/libnormaliz/integer.h => Qsource/libQnormaliz/Qinteger.h (52%)
copy source/libnormaliz/libnormaliz.cpp => Qsource/libQnormaliz/Qlibnormaliz.cpp (97%)
copy source/libnormaliz/list_operations.cpp => Qsource/libQnormaliz/Qlist_operations.cpp (70%)
copy source/libnormaliz/list_operations.h => Qsource/libQnormaliz/Qlist_operations.h (83%)
copy source/libnormaliz/list_operations.h => Qsource/libQnormaliz/Qmap_operations.h (52%)
copy source/libnormaliz/matrix.cpp => Qsource/libQnormaliz/Qmatrix.cpp (60%)
copy source/libnormaliz/matrix.h => Qsource/libQnormaliz/Qmatrix.h (68%)
copy source/libnormaliz/my_omp.h => Qsource/libQnormaliz/Qmy_omp.h (100%)
copy source/libnormaliz/normaliz_exception.h => Qsource/libQnormaliz/Qnormaliz_exception.h (94%)
create mode 100644 Qsource/libQnormaliz/Qsublattice_representation.cpp
create mode 100644 Qsource/libQnormaliz/Qsublattice_representation.h
create mode 100644 Qsource/libQnormaliz/Qvector_operations.cpp
copy source/libnormaliz/vector_operations.h => Qsource/libQnormaliz/Qvector_operations.h (58%)
create mode 100644 Qsource/libQnormaliz/Qversion.h
create mode 100644 Qsource/libQnormaliz/Qversion.h.in
copy source/libnormaliz/cone_helper.h => Qsource/libQnormaliz/libQnormaliz-templated.cpp (62%)
copy source/libnormaliz/libnormaliz.h => Qsource/libQnormaliz/libQnormaliz.h (96%)
create mode 100644 Qtest/Makefile.am
create mode 100644 Qtest/Makefile.classic
create mode 100644 Qtest/test-s/2equations.in
create mode 100644 Qtest/test-s/2equations.ref
create mode 100644 Qtest/test-s/2x2.in
create mode 100644 Qtest/test-s/2x2.ref
copy {example => Qtest/test-s}/3x3magic.in (88%)
create mode 100644 Qtest/test-s/3x3magic.ref
create mode 100644 Qtest/test-s/4x4.in
copy test/test-mm/4x4gen.ref => Qtest/test-s/4x4.ref (64%)
copy {example => Qtest/test-s}/5x5.in (93%)
create mode 100644 Qtest/test-s/5x5.ref
copy {example => Qtest/test-s}/5x5dual.in (92%)
create mode 100644 Qtest/test-s/5x5dual.ref
create mode 100644 Qtest/test-s/A443.in
create mode 100644 Qtest/test-s/A443.ref
create mode 100644 Qtest/test-s/Condorcet.in
create mode 100644 Qtest/test-s/Condorcet.ref
create mode 100644 Qtest/test-s/InhomIneq_7.in
create mode 100644 Qtest/test-s/InhomIneq_7.ref
create mode 100644 Qtest/test-s/InhomIneq_gen.in
create mode 100644 Qtest/test-s/InhomIneq_gen.ref
copy {example => Qtest/test-s}/bo5.in (100%)
create mode 100644 Qtest/test-s/bo5.ref
copy {example => Qtest/test-s}/cut_poly_7.in (100%)
create mode 100644 Qtest/test-s/cut_poly_7.ref
copy {example => Qtest/test-s}/gen_inhom_nonpointed.in (100%)
copy test/test-s/ChineseRemainder.ref => Qtest/test-s/gen_inhom_nonpointed.ref (59%)
copy {example => Qtest/test-s}/max_polytope_cand.in (90%)
create mode 100644 Qtest/test-s/max_polytope_cand.ref
create mode 100644 Qtest/test-s/medium.in
copy {test/test-r1 => Qtest/test-s}/medium.ref (98%)
copy {example => Qtest/test-s}/rational.in (66%)
create mode 100644 Qtest/test-s/rational.ref
copy {example => Qtest/test-s}/small.in (100%)
rename test/test-hh/small.IntHull.ref => Qtest/test-s/small.ref (92%)
copy {example => Qtest/test-s}/strict_sign.in (100%)
create mode 100644 Qtest/test-s/strict_sign.ref
copy {example => Qtest/test-s}/subspace4.in (100%)
create mode 100644 Qtest/test-s/subspace4.ref
create mode 100644 README.md
delete mode 100644 Singular/INSTALL
delete mode 100644 Singular/normaliz.lib
create mode 100644 configure.ac
rename debian/{libnormaliz0-dev-common.install => libnormaliz-dev-common.install} (100%)
rename debian/{libnormaliz0-dev.install => libnormaliz-dev.install} (100%)
delete mode 100644 debian/libnormaliz0.lintian-overrides
rename debian/{libnormaliz0.install => libnormaliz3.install} (100%)
create mode 100644 debian/libnormaliz3.lintian-overrides
delete mode 100644 debian/patches/debianization-documentation.patch
delete mode 100644 doc/NmzIntegrate.tex
create mode 100644 doc/Normaliz.pdf
delete mode 100644 doc/Normaliz.tex
delete mode 100644 doc/jNormaliz.jpg
copy example/{5x5.in => 5x5Gorenstein.in} (98%)
create mode 100644 example/ChF_16_1048576.in
create mode 100644 example/ChF_2_64.in
create mode 100644 example/ChF_8_1024.in
delete mode 100644 example/CondEffPlurHilbBas.in
delete mode 100644 example/CondEffPlurSemi.in
delete mode 100644 example/CondEffPlurSymm.in
delete mode 100644 example/CondEffPlurSymm.pnm
delete mode 100644 example/CondEffPlurSymmSemi.in
create mode 100644 example/Condorcet.symm.in
create mode 100644 example/CondorcetN.in
delete mode 100644 example/CondorcetSymm.in
delete mode 100644 example/CondorcetSymm.pnm
delete mode 100644 example/CondorcetSymmSemi.in
create mode 100644 example/Makefile.am
delete mode 100644 example/PluralityVsCutoffSemi.in
delete mode 100644 example/PluralityVsCutoffSymm.in
delete mode 100644 example/PluralityVsCutoffSymm.pnm
delete mode 100644 example/PluralityVsCutoffSymmSemi.in
copy {test/test-1 => example}/hickerson-16.in (100%)
create mode 100644 example/hickerson-18plus1.in
delete mode 100644 example/j46.pnm
create mode 100644 example/knapsack_11_60.in
create mode 100644 example/no_open_facet.in
create mode 100644 example/open_facet.in
create mode 100644 example/pedro2.in
delete mode 100644 example/rational.pnm
create mode 100644 example/strictBorda.in
delete mode 100644 source/Makefile
create mode 100644 source/Makefile.am
create mode 100644 source/Makefile.classic
create mode 100644 source/cmake/Modules/FindCOCOA.cmake
create mode 100644 source/cmake/Modules/FindNAUTY.cmake
delete mode 100644 source/genEhrhart/INSTALL
delete mode 100644 source/genEhrhart/Makefile
delete mode 100644 source/genEhrhart/cyclRatFunct.C
delete mode 100644 source/genEhrhart/genEhrhart.C
delete mode 100644 source/genEhrhart/nmzIntInput.C
delete mode 100644 source/genEhrhart/nmzIntegral.C
delete mode 100644 source/genEhrhart/nmzIntegrate.C
rename source/{Input.cpp => input.cpp} (57%)
delete mode 100644 source/libnormaliz/HilbertSeriesTest.cpp
rename source/libnormaliz/{Makefile => Makefile.classic} (51%)
delete mode 100644 source/libnormaliz/bottom_gen.in
delete mode 100644 source/libnormaliz/libnormaliz-impl.cpp
create mode 100644 source/libnormaliz/nmz_integral.cpp
rename source/{Normaliz-impl.cpp => libnormaliz/nmz_integrate.cpp} (77%)
create mode 100644 source/libnormaliz/nmz_integrate.h
rename source/{genEhrhart/nmzIntPoly.C => libnormaliz/nmz_polynomial.cpp} (62%)
create mode 100644 source/maxsimplex/CMakeLists.txt
delete mode 100644 source/maxsimplex/Makefile
create mode 100644 source/maxsimplex/Makefile.classic
rename source/{Normaliz.cpp => normaliz.cpp} (51%)
rename source/{Normaliz.h => normaliz.h} (100%)
rename source/{Options.cpp => options.cpp} (62%)
rename source/{Options.h => options.h} (82%)
create mode 100644 source/outerpar/Makefile.classic
create mode 100644 source/outerpar/outerpar.cpp
rename test/test-mm/small.in => source/outerpar/small_gens.mat (99%)
create mode 100644 test/Makefile.am
rename test/{Makefile => Makefile.classic} (93%)
copy example/5x5.in => test/test-/5x5PF.in (95%)
create mode 100644 test/test-/5x5PF.ref
create mode 100644 test/test-/ChF_8_1024.in
create mode 100644 test/test-/ChF_8_1024.ref
create mode 100644 test/test-/ChF_8_1024P.in
create mode 100644 test/test-/ChF_8_1024P.ref
create mode 100644 test/test-/InhomIneqSymb.in
create mode 100644 test/test-/InhomIneqSymb.ref
create mode 100644 test/test-/Thierry.in
create mode 100644 test/test-/Thierry.ref
create mode 100644 test/test-/ThierryApproximate.in
create mode 100644 test/test-/ThierryApproximate.ref
create mode 100644 test/test-/ThierryNoProjection.in
create mode 100644 test/test-/ThierryNoProjection.ref
create mode 100644 test/test-/ThierryPF.in
create mode 100644 test/test-/ThierryPF.ref
create mode 100644 test/test-/hickerson-16plus1.in
create mode 100644 test/test-/hickerson-16plus1.ref
create mode 100644 test/test-/lowrankPF.in
copy test/{test-1/lowrank.ref => test-/lowrankPF.ref} (98%)
rename test/{test-mm/small_inhom.in => test-/smallPF.in} (98%)
rename test/{test-hh/small.ref => test-/smallPF.ref} (99%)
create mode 100644 test/test-/strict.in
create mode 100644 test/test-/strict.ref
create mode 100644 test/test-Int/Condorcet-q.in
create mode 100644 test/test-Int/Condorcet-q.ref
copy example/Condorcet.in => test/test-Int/Condorcet-v.in (100%)
create mode 100644 test/test-Int/Condorcet-v.ref
copy example/CondorcetSemi.in => test/test-Int/CondorcetSemi-q.in (100%)
create mode 100644 test/test-Int/CondorcetSemi-q.ref
create mode 100644 test/test-Int/j462.in
create mode 100644 test/test-Int/j462.ref
create mode 100644 test/test-Int/rational-E.in
create mode 100644 test/test-Int/rational-E.ref
copy example/rational.in => test/test-Int/rational-I.in (54%)
create mode 100644 test/test-Int/rational-I.ref
copy example/rational.in => test/test-Int/rational-L.in (50%)
create mode 100644 test/test-Int/rational-L.ref
create mode 100644 test/test-Int/zero-E.in
copy test/{test-1/zero4.ref => test-Int/zero-E.ref} (64%)
create mode 100644 test/test-Int/zero-I.in
copy test/{test-/zero4.ref => test-Int/zero-I.ref} (86%)
create mode 100644 test/test-Int/zero-L.in
copy test/{test-/zero4.ref => test-Int/zero-L.ref} (82%)
create mode 100644 test/test-mm/no_open_facet.in
create mode 100644 test/test-mm/no_open_facet.ref
create mode 100644 test/test-mm/open_facet.in
create mode 100644 test/test-mm/open_facet.ref
delete mode 100644 test/test-mm/small.ref
delete mode 100644 test/test-mm/small_inhom.ref
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