[r-cran-spam] 09/09: Merge tag 'upstream/2.1-1'
Sébastien Villemot
sebastien at debian.org
Fri Nov 17 09:18:49 UTC 2017
This is an automated email from the git hooks/post-receive script.
sebastien pushed a commit to branch master
in repository r-cran-spam.
commit f4cdca48af47b0c926f77111cc257290bcbe0168
Merge: a67a201 a80fc45
Author: Sébastien Villemot <sebastien at debian.org>
Date: Fri Nov 17 10:18:13 2017 +0100
Merge tag 'upstream/2.1-1'
Upstream version 2.1-1
ChangeLog | 1622 ++++++++
DESCRIPTION | 43 +
MD5 | 182 +
NAMESPACE | 304 ++
R/apply.R | 77 +
R/constructors.R | 71 +
R/covmat.R | 197 +
R/definitions.R | 1714 +++++++++
R/deprecated.R | 34 +
R/diff.R | 30 +
R/dim.R | 172 +
R/dist.R | 191 +
R/foreign.R | 322 ++
R/helper.R | 376 ++
R/kronecker.R | 181 +
R/math.R | 698 ++++
R/mle.R | 181 +
R/norm.R | 61 +
R/permutation.R | 206 +
R/plotting.R | 194 +
R/precmat.R | 172 +
R/profile.R | 130 +
R/rep_len_long.R | 32 +
R/rmvnorm.R | 144 +
R/rowcolstats.R | 119 +
R/s3only.R | 19 +
R/s4coerce.R | 45 +
R/spam_solve.R | 1183 ++++++
R/spamlist.R | 141 +
R/subset.R | 569 +++
R/summary.R | 61 +
R/tailhead.R | 51 +
R/tcrossprod.R | 48 +
R/toepliz.R | 166 +
R/xybind.R | 246 ++
README | 17 +
build/vignette.rds | Bin 0 -> 207 bytes
data/Oral.rda | Bin 0 -> 9354 bytes
data/UScounties.ndorder.rda | Bin 0 -> 39472 bytes
data/UScounties.storder.rda | Bin 0 -> 21796 bytes
data/USprecip.rda | Bin 0 -> 96556 bytes
data/germany.rda | Bin 0 -> 55016 bytes
demo/00Index | 10 +
demo/article-jss-example1.R | 9 +
demo/article-jss-example2.R | 10 +
demo/article-jss.R | 356 ++
demo/cholesky.R | 157 +
demo/jss10-example1.R | 215 ++
demo/jss10-example2.R | 7 +
demo/jss15-BYM.R | 173 +
demo/jss15-Leroux.R | 190 +
demo/spam.R | 73 +
demo/timing.R | 78 +
inst/0ChangeLog | 42 +
inst/0LICENSE | 38 +
inst/0NEWS | 404 ++
inst/CITATION | 37 +
inst/NEWS | 604 +++
inst/demodata/germany.adjacency | 545 +++
inst/doc/jss15.pdf | Bin 0 -> 948347 bytes
inst/doc/jss15.pdf.asis | 2 +
man/Oral.Rd | 47 +
man/UScounties.Rd | 62 +
man/USprecip.Rd | 70 +
man/adjacency.Rd | 50 +
man/allequal.Rd | 92 +
man/apply.Rd | 96 +
man/bandwidth.Rd | 46 +
man/bdiag.Rd | 73 +
man/chol.Rd | 161 +
man/circulant.Rd | 37 +
man/cleanup.Rd | 39 +
man/coerce.Rd | 49 +
man/coercion.Rd | 47 +
man/complexity.Rd | 60 +
man/constructors.Rd | 43 +
man/cov.Rd | 83 +
man/crossprod.Rd | 55 +
man/det.Rd | 77 +
man/diag.Rd | 90 +
man/diff.Rd | 39 +
man/dim.Rd | 57 +
man/display.Rd | 63 +
man/foreign.Rd | 84 +
man/germany.Rd | 57 +
man/germanydata.Rd | 52 +
man/grid_trace2.Rd | 60 +
man/grid_zoom.Rd | 95 +
man/headtail.Rd | 64 +
man/history.spam.Rd | 48 +
man/image.Rd | 66 +
man/import.Rd | 84 +
man/isSymmetric.Rd | 41 +
man/kronecker.Rd | 51 +
man/landkreis.Rd | 59 +
man/lu.tri.Rd | 54 +
man/makeprec.Rd | 52 +
man/math.Rd | 124 +
man/math2.Rd | 45 +
man/methods.Rd | 26 +
man/mle.Rd | 137 +
man/nearestdist.Rd | 102 +
man/operations.Rd | 177 +
man/options.Rd | 135 +
man/ordering.Rd | 76 +
man/pad.Rd | 61 +
man/permutation.Rd | 57 +
man/powerboost.Rd | 35 +
man/precmat.Rd | 71 +
man/print.Rd | 66 +
man/rdist.Rd | 64 +
man/rmvnorm.Rd | 83 +
man/rmvnorm.const.Rd | 61 +
man/rowcolstats.Rd | 60 +
man/s3only.Rd | 41 +
man/solve.Rd | 145 +
man/spam-class.Rd | 178 +
man/spam-deprecated.Rd | 31 +
man/spam-package.Rd | 81 +
man/spam.chol.NgPeyton-class.Rd | 111 +
man/spam.creation.Rd | 123 +
man/spam.internal.Rd | 43 +
man/summary.Rd | 65 +
man/todo.Rd | 60 +
man/toeplitz.Rd | 38 +
man/triplet.Rd | 51 +
man/validate_spam.Rd | 27 +
man/version.Rd | 65 +
man/xybind.Rd | 61 +
src/Makevars | 8 +
src/bckslvmodified.f | 177 +
src/cholmodified.f | 5838 +++++++++++++++++++++++++++++
src/dist.f | 352 ++
src/fromsparsekit.f | 881 +++++
src/init.c | 164 +
src/kronecker.f | 76 +
src/permutation.f | 484 +++
src/rep_len_long.c | 8 +
src/rowcolstats.f | 152 +
src/spamown.f | 1916 ++++++++++
src/spamown2.f | 396 ++
src/xybind.f | 42 +
tests/demo_article-jss-example1.R | 216 ++
tests/demo_article-jss-example1.Rout.save | 255 ++
tests/demo_article-jss-example2.R | 233 ++
tests/demo_article-jss-example2.Rout.save | 284 ++
tests/demo_article-jss.R | 371 ++
tests/demo_article-jss.Rout.save | 105 +
tests/demo_cholesky.R | 162 +
tests/demo_cholesky.Rout.save | 43 +
tests/demo_jss15-BYM.R | 187 +
tests/demo_jss15-BYM.Rout.save | 46 +
tests/demo_jss15-Leroux.R | 200 +
tests/demo_jss15-Leroux.Rout.save | 57 +
tests/demo_spam.R | 81 +
tests/demo_spam.Rout.save | 54 +
tests/demo_timing.R | 109 +
tests/demo_timing.Rout.save | 83 +
tests/jss_areal_counts.R | 109 +
tests/jss_areal_counts.Rout.save | 154 +
tests/testthat.R | 4 +
tests/testthat.Rout.save | 41 +
tests/testthat/helper.R | 57 +
tests/testthat/test-constructors.R | 65 +
tests/testthat/test-covmat.R | 29 +
tests/testthat/test-crossprod.R | 51 +
tests/testthat/test-diff.R | 27 +
tests/testthat/test-dim.R | 51 +
tests/testthat/test-dist.R | 223 ++
tests/testthat/test-helper.R | 84 +
tests/testthat/test-kronecker.R | 66 +
tests/testthat/test-math.R | 162 +
tests/testthat/test-mle.R | 125 +
tests/testthat/test-ops.R | 72 +
tests/testthat/test-overall.R | 298 ++
tests/testthat/test-permutation.R | 51 +
tests/testthat/test-profile.R | 38 +
tests/testthat/test-rowcolstats.R | 76 +
tests/testthat/test-solve.R | 164 +
tests/testthat/test-spamlist.R | 113 +
tests/testthat/test-subset.R | 114 +
tests/testthat/test-xybind.R | 99 +
vignettes/jss15.pdf.asis | 2 +
183 files changed, 33007 insertions(+)
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