[sundials] branch master updated (8e1ebdd -> b5c9f90)
Dima Kogan
dima at secretsauce.net
Wed Nov 22 08:38:19 UTC 2017
This is an automated email from the git hooks/post-receive script.
dkogan pushed a change to branch master
in repository sundials.
from 8e1ebdd removed non-matching wildcards from debian/copyright
new 7b9915c New upstream version 3.1.0+dfsg
new b5c9f90 Updated version 3.1.0+dfsg from 'upstream/3.1.0+dfsg'
The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 44 -
CMakeLists.txt | 1487 ++++---
README | 8 +-
config/FindHypre.cmake | 5 +-
config/FindKLU.cmake | 4 +-
config/FindMPI.cmake | 11 +
config/FindPETSc.cmake | 3 -
config/FindSUPERLUMT.cmake | 76 +-
config/SundialsAddTest.cmake | 135 +-
config/SundialsBlas.cmake | 101 +
config/SundialsCMakeMacros.cmake | 118 +
config/SundialsCXX.cmake | 49 +-
config/SundialsDeprecated.cmake | 40 +
config/SundialsFortran.cmake | 72 +-
config/SundialsFortran90.cmake | 67 +-
config/SundialsHypre.cmake | 4 +-
config/SundialsKLU.cmake | 10 +-
config/SundialsLapack.cmake | 46 +-
config/SundialsMPIC.cmake | 15 +-
config/SundialsMPICXX.cmake | 12 +-
config/SundialsMPIF.cmake | 10 +-
config/SundialsMPIF90.cmake | 12 +-
config/SundialsPETSc.cmake | 4 +-
config/SundialsSuperLUMT.cmake | 24 +-
config/SundialsXSDK.cmake | 314 ++
examples/arkode/CXX_parallel/CMakeLists.txt | 99 +-
examples/arkode/CXX_parallel/README | 7 +-
examples/arkode/CXX_parallel/ark_heat2D.cpp | 90 +-
examples/arkode/CXX_parallel/ark_heat2D.out | 8 +-
examples/arkode/CXX_serial/CMakeLists.txt | 246 +-
examples/arkode/CXX_serial/README | 7 +-
examples/arkode/CXX_serial/ark_analytic_sys.cpp | 177 +-
examples/arkode/CXX_serial/ark_analytic_sys.out | 30 +-
examples/arkode/C_openmp/CMakeLists.txt | 108 +-
examples/arkode/C_openmp/README | 7 +-
examples/arkode/C_openmp/ark_brusselator1D_omp.c | 165 +-
examples/arkode/C_parallel/CMakeLists.txt | 100 +-
examples/arkode/C_parallel/README | 7 +-
examples/arkode/C_parallel/ark_diurnal_kry_bbd_p.c | 98 +-
.../arkode/C_parallel/ark_diurnal_kry_bbd_p.out | 8 +-
examples/arkode/C_parallel/ark_diurnal_kry_p.c | 104 +-
examples/arkode/C_parallel/ark_diurnal_kry_p.out | 2 +-
examples/arkode/C_parhyp/CMakeLists.txt | 102 +-
examples/arkode/C_parhyp/README | 7 +-
examples/arkode/C_parhyp/ark_diurnal_kry_ph.c | 95 +-
examples/arkode/C_parhyp/ark_diurnal_kry_ph.out | 2 +-
examples/arkode/C_serial/CMakeLists.txt | 283 +-
examples/arkode/C_serial/README | 7 +-
examples/arkode/C_serial/ark_KrylovDemo_prec.c | 118 +-
examples/arkode/C_serial/ark_KrylovDemo_prec.out | 32 +-
examples/arkode/C_serial/ark_analytic.c | 106 +-
examples/arkode/C_serial/ark_analytic_nonlin.c | 24 +-
examples/arkode/C_serial/ark_brusselator.c | 87 +-
examples/arkode/C_serial/ark_brusselator1D.c | 168 +-
.../arkode/C_serial/ark_brusselator1D_FEM_slu.c | 331 +-
.../arkode/C_serial/ark_brusselator1D_FEM_slu.out | 2 +
examples/arkode/C_serial/ark_brusselator1D_klu.c | 182 +-
examples/arkode/C_serial/ark_brusselator_fp.c | 26 +-
examples/arkode/C_serial/ark_heat1D.c | 77 +-
examples/arkode/C_serial/ark_heat1D.out | 10 +-
examples/arkode/C_serial/ark_heat1D_adapt.c | 134 +-
examples/arkode/C_serial/ark_heat1D_adapt.out | 246 +-
examples/arkode/C_serial/ark_robertson.c | 141 +-
examples/arkode/C_serial/ark_robertson_root.c | 88 +-
examples/arkode/F77_parallel/CMakeLists.txt | 112 +-
examples/arkode/F77_parallel/README | 7 +-
examples/arkode/F77_parallel/fark_diag_kry_bbd_p.f | 36 +-
.../arkode/F77_parallel/fark_diag_kry_bbd_p.out | 8 +-
examples/arkode/F77_parallel/fark_diag_non_p.f | 108 +-
examples/arkode/F77_serial/CMakeLists.txt | 294 +-
examples/arkode/F77_serial/README | 7 +-
examples/arkode/F77_serial/fark_diurnal_kry_bp.f | 37 +-
examples/arkode/F77_serial/fark_diurnal_kry_bp.out | 4 +-
examples/arkode/F77_serial/fark_roberts_dnsL.f | 56 +-
examples/arkode/F90_parallel/CMakeLists.txt | 104 +-
examples/arkode/F90_parallel/README | 7 +-
examples/arkode/F90_parallel/fark_heat2D.f90 | 108 +-
examples/arkode/F90_parallel/fark_heat2D.out | 14 +-
examples/arkode/F90_serial/CMakeLists.txt | 302 +-
examples/arkode/F90_serial/README | 7 +-
examples/arkode/F90_serial/ark_bruss.f90 | 64 +-
examples/arkode/F90_serial/ark_bruss1D_FEM_klu.f90 | 119 +-
examples/arkode/F90_serial/ark_bruss1D_FEM_klu.out | 2 +-
examples/cvode/C_openmp/CMakeLists.txt | 80 +-
examples/cvode/C_openmp/README | 7 +-
examples/cvode/C_openmp/cvAdvDiff_bnd_omp.c | 103 +-
examples/cvode/cuda/CMakeLists.txt | 124 +
examples/cvode/cuda/README | 3 +
examples/cvode/cuda/cvAdvDiff_kry_cuda.cu | 496 +++
examples/cvode/cuda/cvAdvDiff_kry_cuda.out | 29 +
examples/cvode/fcmix_parallel/CMakeLists.txt | 114 +-
examples/cvode/fcmix_parallel/README | 7 +-
examples/cvode/fcmix_parallel/fcvDiag_kry_bbd_p.f | 75 +-
.../cvode/fcmix_parallel/fcvDiag_kry_bbd_p.out | 84 +-
examples/cvode/fcmix_parallel/fcvDiag_kry_p.f | 182 +-
examples/cvode/fcmix_parallel/fcvDiag_kry_p.out | 68 +-
examples/cvode/fcmix_parallel/fcvDiag_non_p.f | 117 +-
examples/cvode/fcmix_parallel/fcvDiag_non_p.out | 32 +-
examples/cvode/fcmix_serial/CMakeLists.txt | 293 +-
examples/cvode/fcmix_serial/README | 9 +-
examples/cvode/fcmix_serial/fcvAdvDiff_bnd.f | 60 +-
examples/cvode/fcmix_serial/fcvDiurnal_kry.f | 107 +-
examples/cvode/fcmix_serial/fcvDiurnal_kry.out | 58 +-
examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.f | 115 +-
examples/cvode/fcmix_serial/fcvDiurnal_kry_bp.out | 4 +-
examples/cvode/fcmix_serial/fcvRoberts_dns.f | 144 +-
examples/cvode/fcmix_serial/fcvRoberts_dns.out | 32 +-
examples/cvode/fcmix_serial/fcvRoberts_dnsL.f | 147 +-
examples/cvode/fcmix_serial/fcvRoberts_dnsL.out | 32 +-
examples/cvode/fcmix_serial/fcvRoberts_klu.f | 433 +-
examples/cvode/fcmix_serial/fcvRoberts_klu.out | 8 +-
examples/cvode/fcmix_serial/fcvRoberts_sps.f | 429 +-
examples/cvode/fcmix_serial/fcvRoberts_sps.out | 4 +-
examples/cvode/parallel/CMakeLists.txt | 110 +-
examples/cvode/parallel/README | 7 +-
examples/cvode/parallel/cvAdvDiff_diag_p.c | 57 +-
examples/cvode/parallel/cvAdvDiff_non_p.c | 50 +-
examples/cvode/parallel/cvAdvDiff_non_p.out | 18 +-
examples/cvode/parallel/cvDiurnal_kry_bbd_p.c | 114 +-
examples/cvode/parallel/cvDiurnal_kry_bbd_p.out | 120 +-
examples/cvode/parallel/cvDiurnal_kry_p.c | 106 +-
examples/cvode/parallel/cvDiurnal_kry_p.out | 60 +-
examples/cvode/parhyp/CMakeLists.txt | 109 +-
examples/cvode/parhyp/README | 14 +-
examples/cvode/parhyp/cvAdvDiff_non_ph.c | 13 +-
examples/cvode/raja/CMakeLists.txt | 124 +
examples/cvode/raja/README | 3 +
.../cvAdvDiff_bnd.c => raja/cvAdvDiff_kry_raja.cu} | 385 +-
examples/cvode/raja/cvAdvDiff_kry_raja.out | 29 +
examples/cvode/serial/CMakeLists.txt | 288 +-
examples/cvode/serial/README | 7 +-
examples/cvode/serial/cvAdvDiff_bnd.c | 114 +-
examples/cvode/serial/cvAdvDiff_bndL.c | 86 +-
examples/cvode/serial/cvDirectDemo_ls.c | 251 +-
examples/cvode/serial/cvDirectDemo_ls.out | 122 +-
examples/cvode/serial/cvDiurnal_kry.c | 123 +-
examples/cvode/serial/cvDiurnal_kry.out | 44 +-
examples/cvode/serial/cvDiurnal_kry_bp.c | 89 +-
examples/cvode/serial/cvDiurnal_kry_bp.out | 102 +-
examples/cvode/serial/cvKrylovDemo_ls.c | 124 +-
examples/cvode/serial/cvKrylovDemo_ls.out | 132 +-
examples/cvode/serial/cvKrylovDemo_prec.c | 141 +-
examples/cvode/serial/cvKrylovDemo_prec.out | 320 +-
examples/cvode/serial/cvRoberts_dns.c | 136 +-
examples/cvode/serial/cvRoberts_dns.out | 26 +-
examples/cvode/serial/cvRoberts_dnsL.c | 80 +-
examples/cvode/serial/cvRoberts_dnsL.out | 26 +-
examples/cvode/serial/cvRoberts_dns_uw.c | 85 +-
examples/cvode/serial/cvRoberts_dns_uw.out | 26 +-
examples/cvode/serial/cvRoberts_klu.c | 93 +-
examples/cvode/serial/cvRoberts_klu.out | 30 +-
examples/cvode/serial/cvRoberts_sps.c | 109 +-
examples/cvodes/C_openmp/CMakeLists.txt | 114 +-
examples/cvodes/C_openmp/README | 7 +-
examples/cvodes/C_openmp/cvsAdvDiff_bnd_omp.c | 96 +-
examples/cvodes/parallel/CMakeLists.txt | 155 +-
examples/cvodes/parallel/README | 7 +-
examples/cvodes/parallel/cvsAdvDiff_ASAp_non_p.c | 43 +-
examples/cvodes/parallel/cvsAdvDiff_ASAp_non_p.out | 51 +-
examples/cvodes/parallel/cvsAdvDiff_FSA_non_p.c | 25 +-
...p.out => cvsAdvDiff_FSA_non_p_-sensi_sim_t.out} | 64 +-
.../parallel/cvsAdvDiff_FSA_non_p_-sensi_stg_t.out | 71 +
examples/cvodes/parallel/cvsAdvDiff_non_p.c | 16 +-
examples/cvodes/parallel/cvsAdvDiff_non_p.out | 18 +-
.../cvodes/parallel/cvsAtmDisp_ASAi_kry_bbd_p.c | 81 +-
.../cvodes/parallel/cvsAtmDisp_ASAi_kry_bbd_p.out | 4 +-
examples/cvodes/parallel/cvsDiurnal_FSA_kry_p.c | 136 +-
...p.out => cvsDiurnal_FSA_kry_p_-sensi_sim_t.out} | 90 +-
...p.out => cvsDiurnal_FSA_kry_p_-sensi_stg_t.out} | 108 +-
examples/cvodes/parallel/cvsDiurnal_kry_bbd_p.c | 106 +-
examples/cvodes/parallel/cvsDiurnal_kry_bbd_p.out | 120 +-
examples/cvodes/parallel/cvsDiurnal_kry_p.c | 109 +-
examples/cvodes/parallel/cvsDiurnal_kry_p.out | 60 +-
examples/cvodes/serial/CMakeLists.txt | 430 +-
examples/cvodes/serial/README | 16 +-
examples/cvodes/serial/cvsAdvDiff_ASAi_bnd.c | 138 +-
examples/cvodes/serial/cvsAdvDiff_FSA_non.c | 35 +-
...non.out => cvsAdvDiff_FSA_non_-sensi_sim_t.out} | 62 +-
.../serial/cvsAdvDiff_FSA_non_-sensi_stg_t.out | 69 +
examples/cvodes/serial/cvsAdvDiff_bnd.c | 86 +-
examples/cvodes/serial/cvsAdvDiff_bndL.c | 78 +-
examples/cvodes/serial/cvsDirectDemo_ls.c | 250 +-
examples/cvodes/serial/cvsDirectDemo_ls.out | 116 +-
examples/cvodes/serial/cvsDiurnal_FSA_kry.c | 103 +-
...kry.out => cvsDiurnal_FSA_kry_-sensi_sim_t.out} | 92 +-
...kry.out => cvsDiurnal_FSA_kry_-sensi_stg_t.out} | 100 +-
examples/cvodes/serial/cvsDiurnal_kry.c | 97 +-
examples/cvodes/serial/cvsDiurnal_kry.out | 44 +-
examples/cvodes/serial/cvsDiurnal_kry_bp.c | 71 +-
examples/cvodes/serial/cvsDiurnal_kry_bp.out | 98 +-
examples/cvodes/serial/cvsFoodWeb_ASAi_kry.c | 154 +-
examples/cvodes/serial/cvsFoodWeb_ASAi_kry.out | 16 +-
examples/cvodes/serial/cvsFoodWeb_ASAp_kry.c | 145 +-
examples/cvodes/serial/cvsFoodWeb_ASAp_kry.out | 20 +-
examples/cvodes/serial/cvsHessian_ASA_FSA.c | 334 +-
examples/cvodes/serial/cvsKrylovDemo_ls.c | 123 +-
examples/cvodes/serial/cvsKrylovDemo_ls.out | 132 +-
examples/cvodes/serial/cvsKrylovDemo_prec.c | 143 +-
examples/cvodes/serial/cvsKrylovDemo_prec.out | 180 +-
examples/cvodes/serial/cvsRoberts_ASAi_dns.c | 177 +-
examples/cvodes/serial/cvsRoberts_ASAi_dns.out | 16 +-
examples/cvodes/serial/cvsRoberts_ASAi_klu.c | 218 +-
examples/cvodes/serial/cvsRoberts_ASAi_sps.c | 238 +-
examples/cvodes/serial/cvsRoberts_FSA_dns.c | 119 +-
...dns.out => cvsRoberts_FSA_dns_-sensi_sim_t.out} | 0
.../serial/cvsRoberts_FSA_dns_-sensi_stg1_t.out | 93 +
examples/cvodes/serial/cvsRoberts_FSA_klu.c | 167 +-
...lu.out => cvsRoberts_FSA_klu_-sensi_stg1_t.out} | 0
examples/cvodes/serial/cvsRoberts_FSA_sps.c | 174 +-
...ps.out => cvsRoberts_FSA_sps_-sensi_stg1_t.out} | 0
examples/cvodes/serial/cvsRoberts_dns.c | 137 +-
examples/cvodes/serial/cvsRoberts_dns.out | 26 +-
examples/cvodes/serial/cvsRoberts_dnsL.c | 77 +-
examples/cvodes/serial/cvsRoberts_dnsL.out | 26 +-
examples/cvodes/serial/cvsRoberts_dns_uw.c | 85 +-
examples/cvodes/serial/cvsRoberts_dns_uw.out | 26 +-
examples/cvodes/serial/cvsRoberts_klu.c | 93 +-
examples/cvodes/serial/cvsRoberts_klu.out | 30 +-
examples/cvodes/serial/cvsRoberts_sps.c | 109 +-
examples/ida/C_openmp/CMakeLists.txt | 149 +-
examples/ida/C_openmp/README | 7 +-
examples/ida/C_openmp/idaFoodWeb_bnd_omp.c | 125 +-
examples/ida/C_openmp/idaFoodWeb_bnd_omp.out | 2 +-
examples/ida/C_openmp/idaFoodWeb_kry_omp.c | 159 +-
examples/ida/fcmix_openmp/CMakeLists.txt | 130 +-
examples/ida/fcmix_openmp/README | 7 +-
examples/ida/fcmix_openmp/fidaRoberts_dns_openmp.f | 61 +-
examples/ida/fcmix_parallel/CMakeLists.txt | 103 +-
examples/ida/fcmix_parallel/README | 7 +-
examples/ida/fcmix_parallel/fidaHeat2D_kry_bbd_p.f | 160 +-
.../ida/fcmix_parallel/fidaHeat2D_kry_bbd_p.out | 26 +-
examples/ida/fcmix_pthreads/CMakeLists.txt | 125 +-
examples/ida/fcmix_pthreads/README | 7 +-
.../ida/fcmix_pthreads/fidaRoberts_dns_pthreads.f | 61 +-
examples/ida/fcmix_serial/CMakeLists.txt | 121 +-
examples/ida/fcmix_serial/README | 7 +-
examples/ida/fcmix_serial/fidaRoberts_dns.f | 50 +-
examples/ida/parallel/CMakeLists.txt | 108 +-
examples/ida/parallel/README | 7 +-
examples/ida/parallel/idaFoodWeb_kry_bbd_p.c | 133 +-
examples/ida/parallel/idaFoodWeb_kry_bbd_p.out | 46 +-
examples/ida/parallel/idaFoodWeb_kry_p.c | 166 +-
examples/ida/parallel/idaFoodWeb_kry_p.out | 18 +-
examples/ida/parallel/idaHeat2D_kry_bbd_p.c | 136 +-
examples/ida/parallel/idaHeat2D_kry_bbd_p.out | 31 +-
examples/ida/parallel/idaHeat2D_kry_p.c | 203 +-
examples/ida/parallel/idaHeat2D_kry_p.out | 10 +-
examples/ida/petsc/CMakeLists.txt | 100 +-
examples/ida/petsc/README | 11 +-
examples/ida/petsc/idaHeat2D_kry_petsc.c | 136 +-
examples/ida/petsc/idaHeat2D_kry_petsc.out | 14 +-
examples/ida/serial/CMakeLists.txt | 323 +-
examples/ida/serial/README | 9 +-
examples/ida/serial/idaFoodWeb_bnd.c | 85 +-
examples/ida/serial/idaFoodWeb_bnd.out | 2 +-
examples/ida/serial/idaFoodWeb_kry.c | 107 +-
examples/ida/serial/idaFoodWeb_kry.out | 2 +-
examples/ida/serial/idaHeat2D_bnd.c | 77 +-
examples/ida/serial/idaHeat2D_bnd.out | 26 +-
examples/ida/serial/idaHeat2D_klu.c | 153 +-
examples/ida/serial/idaHeat2D_klu.out | 2 +-
examples/ida/serial/idaHeat2D_kry.c | 94 +-
examples/ida/serial/idaHeat2D_kry.out | 20 +-
examples/ida/serial/idaKrylovDemo_ls.c | 116 +-
examples/ida/serial/idaKrylovDemo_ls.out | 28 +-
examples/ida/serial/idaRoberts_dns.c | 145 +-
examples/ida/serial/idaRoberts_dns.out | 42 +-
examples/ida/serial/idaRoberts_klu.c | 146 +-
examples/ida/serial/idaRoberts_klu.out | 2 +-
examples/ida/serial/idaRoberts_sps.c | 135 +-
examples/ida/serial/idaRoberts_sps.out | 26 +-
examples/ida/serial/idaSlCrank_dns.c | 106 +-
examples/ida/serial/idaSlCrank_dns.out | 4 +-
examples/idas/C_openmp/CMakeLists.txt | 120 +-
examples/idas/C_openmp/README | 7 +-
examples/idas/C_openmp/idasFoodWeb_bnd_omp.c | 125 +-
examples/idas/C_openmp/idasFoodWeb_bnd_omp.out | 2 +-
examples/idas/C_openmp/idasFoodWeb_kry_omp.c | 161 +-
examples/idas/parallel/CMakeLists.txt | 149 +-
examples/idas/parallel/README | 7 +-
examples/idas/parallel/idasBruss_ASAp_kry_bbd_p.c | 185 +-
.../idas/parallel/idasBruss_ASAp_kry_bbd_p.out | 8 +-
examples/idas/parallel/idasBruss_FSA_kry_bbd_p.c | 176 +-
examples/idas/parallel/idasBruss_FSA_kry_bbd_p.out | 9 +-
examples/idas/parallel/idasBruss_kry_bbd_p.c | 179 +-
examples/idas/parallel/idasBruss_kry_bbd_p.out | 3 +-
examples/idas/parallel/idasFoodWeb_kry_bbd_p.c | 138 +-
examples/idas/parallel/idasFoodWeb_kry_bbd_p.out | 27 +-
examples/idas/parallel/idasFoodWeb_kry_p.c | 167 +-
examples/idas/parallel/idasFoodWeb_kry_p.out | 19 +-
examples/idas/parallel/idasHeat2D_FSA_kry_bbd_p.c | 159 +-
.../idas/parallel/idasHeat2D_FSA_kry_bbd_p.out | 57 -
.../idasHeat2D_FSA_kry_bbd_p_-sensi_stg_t.out | 58 +
examples/idas/parallel/idasHeat2D_kry_bbd_p.c | 134 +-
examples/idas/parallel/idasHeat2D_kry_bbd_p.out | 32 +-
examples/idas/parallel/idasHeat2D_kry_p.c | 203 +-
examples/idas/parallel/idasHeat2D_kry_p.out | 18 +-
examples/idas/serial/CMakeLists.txt | 433 +-
examples/idas/serial/README | 13 +-
examples/idas/serial/idasAkzoNob_ASAi_dns.c | 115 +-
examples/idas/serial/idasAkzoNob_dns.c | 99 +-
examples/idas/serial/idasAkzoNob_dns.out | 4 +-
examples/idas/serial/idasFoodWeb_bnd.c | 89 +-
examples/idas/serial/idasFoodWeb_bnd.out | 2 +-
examples/idas/serial/idasHeat2D_bnd.c | 77 +-
examples/idas/serial/idasHeat2D_bnd.out | 26 +-
examples/idas/serial/idasHeat2D_kry.c | 98 +-
examples/idas/serial/idasHeat2D_kry.out | 20 +-
examples/idas/serial/idasHessian_ASA_FSA.c | 200 +-
examples/idas/serial/idasKrylovDemo_ls.c | 119 +-
examples/idas/serial/idasKrylovDemo_ls.out | 28 +-
examples/idas/serial/idasRoberts_ASAi_dns.c | 108 +-
examples/idas/serial/idasRoberts_ASAi_dns.out | 11 +-
examples/idas/serial/idasRoberts_ASAi_klu.c | 192 +-
examples/idas/serial/idasRoberts_ASAi_sps.c | 194 +-
examples/idas/serial/idasRoberts_FSA_dns.c | 111 +-
...ns.out => idasRoberts_FSA_dns_-sensi_stg_t.out} | 100 +-
examples/idas/serial/idasRoberts_FSA_klu.c | 166 +-
...lu.out => idasRoberts_FSA_klu_-sensi_stg_t.out} | 0
examples/idas/serial/idasRoberts_FSA_sps.c | 168 +-
...ps.out => idasRoberts_FSA_sps_-sensi_stg_t.out} | 0
examples/idas/serial/idasRoberts_dns.c | 147 +-
examples/idas/serial/idasRoberts_dns.out | 12 +-
examples/idas/serial/idasRoberts_klu.c | 123 +-
examples/idas/serial/idasRoberts_klu.out | 2 +-
examples/idas/serial/idasRoberts_sps.c | 133 +-
examples/idas/serial/idasRoberts_sps.out | 26 +-
examples/idas/serial/idasSlCrank_FSA_dns.c | 104 +-
examples/idas/serial/idasSlCrank_FSA_dns.out | 14 +-
examples/idas/serial/idasSlCrank_dns.c | 113 +-
examples/idas/serial/idasSlCrank_dns.out | 4 +-
examples/kinsol/C_openmp/CMakeLists.txt | 82 +-
examples/kinsol/C_openmp/README | 7 +-
examples/kinsol/C_openmp/kinFoodWeb_kry_omp.c | 138 +-
examples/kinsol/fcmix_parallel/CMakeLists.txt | 87 +-
examples/kinsol/fcmix_parallel/README | 7 +-
examples/kinsol/fcmix_parallel/fkinDiagon_kry_p.f | 160 +-
examples/kinsol/fcmix_serial/CMakeLists.txt | 95 +-
examples/kinsol/fcmix_serial/README | 7 +-
examples/kinsol/fcmix_serial/fkinDiagon_kry.f | 83 +-
examples/kinsol/parallel/CMakeLists.txt | 102 +-
examples/kinsol/parallel/README | 7 +-
examples/kinsol/parallel/kinFoodWeb_kry_bbd_p.c | 175 +-
examples/kinsol/parallel/kinFoodWeb_kry_p.c | 217 +-
examples/kinsol/serial/CMakeLists.txt | 285 +-
examples/kinsol/serial/README | 8 +-
examples/kinsol/serial/kinFerTron_dns.c | 54 +-
examples/kinsol/serial/kinFerTron_klu.c | 140 +-
examples/kinsol/serial/kinFoodWeb_kry.c | 120 +-
examples/kinsol/serial/kinFoodWeb_kry.out | 6 +-
examples/kinsol/serial/kinKrylovDemo_ls.c | 130 +-
examples/kinsol/serial/kinKrylovDemo_ls.out | 8 +-
examples/kinsol/serial/kinLaplace_bnd.c | 52 +-
examples/kinsol/serial/kinLaplace_bnd.out | 4 +-
examples/kinsol/serial/kinLaplace_picard_bnd.c | 94 +-
examples/kinsol/serial/kinLaplace_picard_bnd.out | 2 +-
examples/kinsol/serial/kinRoberts_fp.c | 71 +-
examples/kinsol/serial/kinRoboKin_dns.c | 56 +-
examples/kinsol/serial/kinRoboKin_slu.c | 183 +-
examples/nvector/C_openmp/CMakeLists.txt | 104 +-
examples/nvector/C_openmp/test_nvector_openmp.c | 37 +-
examples/nvector/cuda/CMakeLists.txt | 151 +
.../test_nvector_cuda.cu} | 118 +-
examples/nvector/parallel/CMakeLists.txt | 125 +-
examples/nvector/parallel/test_nvector_mpi.c | 39 +-
examples/nvector/parhyp/CMakeLists.txt | 129 +-
examples/nvector/parhyp/test_nvector_parhyp.c | 51 +-
examples/nvector/petsc/CMakeLists.txt | 128 +-
examples/nvector/petsc/test_nvector_petsc.c | 43 +-
examples/nvector/pthreads/CMakeLists.txt | 113 +-
examples/nvector/pthreads/test_nvector_pthreads.c | 36 +-
examples/nvector/raja/CMakeLists.txt | 149 +
.../test_nvector_raja.cu} | 119 +-
examples/nvector/serial/CMakeLists.txt | 100 +-
examples/nvector/serial/test_nvector_serial.c | 29 +-
examples/nvector/test_nvector.c | 84 +-
examples/nvector/test_nvector.h | 54 +-
examples/sunlinsol/band/CMakeLists.txt | 171 +
examples/sunlinsol/band/test_sunlinsol_band.c | 184 +
examples/sunlinsol/dense/CMakeLists.txt | 170 +
examples/sunlinsol/dense/test_sunlinsol_dense.c | 181 +
examples/sunlinsol/klu/CMakeLists.txt | 175 +
examples/sunlinsol/klu/test_sunlinsol_klu.c | 183 +
examples/sunlinsol/lapackband/CMakeLists.txt | 177 +
.../lapackband/test_sunlinsol_lapackband.c | 184 +
examples/sunlinsol/lapackdense/CMakeLists.txt | 177 +
.../lapackdense/test_sunlinsol_lapackdense.c | 181 +
examples/sunlinsol/pcg/serial/CMakeLists.txt | 158 +
.../pcg/serial/test_sunlinsol_pcg_serial.c | 444 ++
examples/sunlinsol/spbcgs/parallel/CMakeLists.txt | 174 +
.../parallel/test_sunlinsol_spbcgs_parallel.c | 590 +++
examples/sunlinsol/spbcgs/serial/CMakeLists.txt | 159 +
.../spbcgs/serial/test_sunlinsol_spbcgs_serial.c | 519 +++
examples/sunlinsol/spfgmr/parallel/CMakeLists.txt | 174 +
.../parallel/test_sunlinsol_spfgmr_parallel.c | 593 +++
examples/sunlinsol/spfgmr/serial/CMakeLists.txt | 159 +
.../spfgmr/serial/test_sunlinsol_spfgmr_serial.c | 522 +++
examples/sunlinsol/spgmr/parallel/CMakeLists.txt | 176 +
.../spgmr/parallel/test_sunlinsol_spgmr_parallel.c | 600 +++
examples/sunlinsol/spgmr/serial/CMakeLists.txt | 161 +
.../spgmr/serial/test_sunlinsol_spgmr_serial.c | 529 +++
examples/sunlinsol/sptfqmr/parallel/CMakeLists.txt | 174 +
.../parallel/test_sunlinsol_sptfqmr_parallel.c | 592 +++
examples/sunlinsol/sptfqmr/serial/CMakeLists.txt | 159 +
.../sptfqmr/serial/test_sunlinsol_sptfqmr_serial.c | 524 +++
examples/sunlinsol/superlumt/CMakeLists.txt | 182 +
.../sunlinsol/superlumt/test_sunlinsol_superlumt.c | 189 +
examples/sunlinsol/test_sunlinsol.c | 429 ++
examples/sunlinsol/test_sunlinsol.h | 67 +
examples/sunmatrix/band/CMakeLists.txt | 161 +
examples/sunmatrix/band/test_sunmatrix_band.c | 264 ++
examples/sunmatrix/dense/CMakeLists.txt | 160 +
examples/sunmatrix/dense/test_sunmatrix_dense.c | 263 ++
examples/sunmatrix/sparse/CMakeLists.txt | 172 +
examples/sunmatrix/sparse/test_sunmatrix_sparse.c | 509 +++
examples/sunmatrix/test_sunmatrix.c | 557 +++
examples/sunmatrix/test_sunmatrix.h | 66 +
...pthreads_C_ex.in => cmakelists_cuda_CUDA_ex.in} | 57 +-
examples/templates/cmakelists_openmp_C_ex.in | 161 +-
examples/templates/cmakelists_openmp_F77_ex.in | 196 +-
examples/templates/cmakelists_parallel_CXX_ex.in | 51 +-
examples/templates/cmakelists_parallel_C_ex.in | 52 +-
examples/templates/cmakelists_parallel_F77_ex.in | 72 +-
examples/templates/cmakelists_parallel_F90_ex.in | 65 +-
examples/templates/cmakelists_parhyp_C_ex.in | 60 +-
examples/templates/cmakelists_petsc_C_ex.in | 59 +-
examples/templates/cmakelists_pthreads_C_ex.in | 149 +-
examples/templates/cmakelists_pthreads_F77_ex.in | 189 +-
...pthreads_C_ex.in => cmakelists_raja_CUDA_ex.in} | 61 +-
examples/templates/cmakelists_serial_CXX_ex.in | 147 +-
examples/templates/cmakelists_serial_C_ex.in | 162 +-
examples/templates/cmakelists_serial_F77_ex.in | 191 +-
examples/templates/cmakelists_serial_F90_ex.in | 182 +-
examples/templates/makefile_cuda_CUDA_ex.in | 81 +
examples/templates/makefile_openmp_C_ex.in | 116 +-
examples/templates/makefile_openmp_F77_ex.in | 103 +-
examples/templates/makefile_parallel_CXX_ex.in | 48 +-
examples/templates/makefile_parallel_C_ex.in | 37 +-
examples/templates/makefile_parallel_F77_ex.in | 40 +-
examples/templates/makefile_parallel_F90_ex.in | 49 +-
examples/templates/makefile_parhyp_C_ex.in | 66 +-
examples/templates/makefile_petsc_C_ex.in | 74 +-
examples/templates/makefile_pthreads_C_ex.in | 114 +-
examples/templates/makefile_pthreads_F77_ex.in | 103 +-
examples/templates/makefile_raja_CUDA_ex.in | 83 +
examples/templates/makefile_serial_CXX_ex.in | 105 +-
examples/templates/makefile_serial_C_ex.in | 114 +-
examples/templates/makefile_serial_F77_ex.in | 97 +-
examples/templates/makefile_serial_F90_ex.in | 102 +-
include/arkode/arkode.h | 19 +-
include/arkode/arkode_band.h | 94 -
include/arkode/arkode_bandpre.h | 65 +-
include/arkode/arkode_bbdpre.h | 123 +-
include/arkode/arkode_dense.h | 77 -
include/arkode/arkode_direct.h | 325 +-
include/arkode/arkode_klu.h | 195 -
include/arkode/arkode_lapack.h | 134 -
include/arkode/arkode_pcg.h | 116 -
include/arkode/arkode_sparse.h | 216 -
include/arkode/arkode_spbcgs.h | 106 -
include/arkode/arkode_spfgmr.h | 115 -
include/arkode/arkode_spgmr.h | 109 -
include/arkode/arkode_spils.h | 350 +-
include/arkode/arkode_sptfqmr.h | 104 -
include/arkode/arkode_superlumt.h | 138 -
include/cvode/cvode.h | 8 +-
include/cvode/cvode_band.h | 66 -
include/cvode/cvode_bandpre.h | 247 +-
include/cvode/cvode_bbdpre.h | 488 +--
include/cvode/cvode_dense.h | 59 -
include/cvode/cvode_diag.h | 3 -
include/cvode/cvode_direct.h | 399 +-
include/cvode/cvode_klu.h | 111 -
include/cvode/cvode_lapack.h | 91 -
include/cvode/cvode_sparse.h | 182 -
include/cvode/cvode_spbcgs.h | 72 -
include/cvode/cvode_spgmr.h | 74 -
include/cvode/cvode_spils.h | 652 +--
include/cvode/cvode_sptfqmr.h | 72 -
include/cvode/cvode_superlumt.h | 84 -
include/cvodes/cvodes.h | 14 +-
include/cvodes/cvodes_band.h | 78 -
include/cvodes/cvodes_bandpre.h | 291 +-
include/cvodes/cvodes_bbdpre.h | 570 +--
include/cvodes/cvodes_dense.h | 70 -
include/cvodes/cvodes_diag.h | 3 -
include/cvodes/cvodes_direct.h | 587 +--
include/cvodes/cvodes_klu.h | 156 -
include/cvodes/cvodes_lapack.h | 110 -
include/cvodes/cvodes_sparse.h | 255 --
include/cvodes/cvodes_spbcgs.h | 102 -
include/cvodes/cvodes_spgmr.h | 103 -
include/cvodes/cvodes_spils.h | 892 ++--
include/cvodes/cvodes_sptfqmr.h | 103 -
include/cvodes/cvodes_superlumt.h | 111 -
include/ida/ida.h | 20 +-
include/ida/ida_band.h | 64 -
include/ida/ida_bbdpre.h | 93 +-
include/ida/ida_dense.h | 63 -
include/ida/ida_direct.h | 423 +-
include/ida/ida_klu.h | 122 -
include/ida/ida_lapack.h | 85 -
include/ida/ida_sparse.h | 268 --
include/ida/ida_spbcgs.h | 64 -
include/ida/ida_spgmr.h | 65 -
include/ida/ida_spils.h | 583 +--
include/ida/ida_sptfqmr.h | 64 -
include/ida/ida_superlumt.h | 99 -
include/idas/idas.h | 24 +-
include/idas/idas_band.h | 86 -
include/idas/idas_bbdpre.h | 561 ++-
include/idas/idas_dense.h | 75 -
include/idas/idas_direct.h | 600 +--
include/idas/idas_klu.h | 157 -
include/idas/idas_lapack.h | 110 -
include/idas/idas_sparse.h | 269 --
include/idas/idas_spbcgs.h | 94 -
include/idas/idas_spgmr.h | 95 -
include/idas/idas_spils.h | 857 ++--
include/idas/idas_sptfqmr.h | 94 -
include/idas/idas_superlumt.h | 112 -
include/kinsol/kinsol.h | 26 +-
include/kinsol/kinsol_band.h | 62 -
include/kinsol/kinsol_bbdpre.h | 88 +-
include/kinsol/kinsol_dense.h | 59 -
include/kinsol/kinsol_direct.h | 204 +-
include/kinsol/kinsol_klu.h | 111 -
include/kinsol/kinsol_lapack.h | 89 -
include/kinsol/kinsol_sparse.h | 165 -
include/kinsol/kinsol_spbcgs.h | 94 -
include/kinsol/kinsol_spfgmr.h | 90 -
include/kinsol/kinsol_spgmr.h | 91 -
include/kinsol/kinsol_spils.h | 527 ++-
include/kinsol/kinsol_sptfqmr.h | 95 -
include/kinsol/kinsol_superlumt.h | 87 -
include/nvector/cuda/ThreadPartitioning.hpp | 178 +
include/nvector/cuda/Vector.hpp | 190 +
include/nvector/cuda/VectorKernels.cuh | 1083 +++++
include/nvector/nvector_cuda.h | 265 ++
include/nvector/nvector_openmp.h | 34 +-
include/nvector/nvector_parallel.h | 67 +-
include/nvector/nvector_parhyp.h | 47 +-
include/nvector/nvector_petsc.h | 50 +-
include/nvector/nvector_pthreads.h | 38 +-
include/nvector/nvector_raja.h | 266 ++
include/nvector/nvector_serial.h | 34 +-
include/nvector/raja/Vector.hpp | 157 +
include/sundials/sundials_band.h | 32 +-
include/sundials/sundials_config.in | 27 +-
include/sundials/sundials_dense.h | 30 +-
include/sundials/sundials_direct.h | 53 +-
include/sundials/sundials_fconfig.in | 56 +
include/sundials/sundials_fnvector.h | 4 +-
include/sundials/sundials_iterative.h | 30 +-
include/sundials/sundials_klu_impl.h | 4 +-
include/sundials/sundials_lapack.h | 82 +-
include/sundials/sundials_linearsolver.h | 364 ++
include/sundials/sundials_math.h | 4 +-
include/sundials/sundials_matrix.h | 196 +
include/sundials/sundials_mpi_types.h | 36 +
include/sundials/sundials_nvector.h | 20 +-
include/sundials/sundials_sparse.h | 4 +-
include/sundials/sundials_spbcgs.h | 4 +-
include/sundials/sundials_spgmr.h | 4 +-
include/sundials/sundials_sptfqmr.h | 4 +-
include/sundials/sundials_superlumt_impl.h | 4 +-
include/sundials/sundials_types.h | 93 +-
include/sundials/sundials_version.h | 66 +
include/sunlinsol/sunlinsol_band.h | 105 +
include/sunlinsol/sunlinsol_dense.h | 111 +
include/sunlinsol/sunlinsol_klu.h | 197 +
include/sunlinsol/sunlinsol_lapackband.h | 123 +
include/sunlinsol/sunlinsol_lapackdense.h | 123 +
include/sunlinsol/sunlinsol_pcg.h | 218 +
include/sunlinsol/sunlinsol_spbcgs.h | 234 ++
include/sunlinsol/sunlinsol_spfgmr.h | 253 ++
include/sunlinsol/sunlinsol_spgmr.h | 254 ++
include/sunlinsol/sunlinsol_sptfqmr.h | 229 ++
include/sunlinsol/sunlinsol_superlumt.h | 169 +
include/sunmatrix/sunmatrix_band.h | 334 ++
include/sunmatrix/sunmatrix_dense.h | 263 ++
include/sunmatrix/sunmatrix_sparse.h | 355 ++
src/arkode/CMakeLists.txt | 100 +-
src/arkode/README | 5 +-
src/arkode/arkode.c | 832 ++--
src/arkode/arkode_band.c | 637 ---
src/arkode/arkode_bandpre.c | 312 +-
src/arkode/arkode_bandpre_impl.h | 22 +-
src/arkode/arkode_bbdpre.c | 393 +-
src/arkode/arkode_bbdpre_impl.h | 22 +-
src/arkode/arkode_butcher.c | 70 +-
src/arkode/arkode_dense.c | 613 ---
src/arkode/arkode_direct.c | 1161 +++++-
src/arkode/arkode_direct_impl.h | 126 +-
src/arkode/arkode_impl.h | 140 +-
src/arkode/arkode_io.c | 191 +-
src/arkode/arkode_klu.c | 1275 ------
src/arkode/arkode_lapack.c | 1270 ------
src/arkode/arkode_pcg.c | 772 ----
src/arkode/arkode_sparse.c | 268 --
src/arkode/arkode_sparse_impl.h | 127 -
src/arkode/arkode_spbcgs.c | 766 ----
src/arkode/arkode_spfgmr.c | 777 ----
src/arkode/arkode_spgmr.c | 779 ----
src/arkode/arkode_spils.c | 1822 ++++++---
src/arkode/arkode_spils_impl.h | 181 +-
src/arkode/arkode_sptfqmr.c | 767 ----
src/arkode/arkode_superlumt.c | 1097 -----
src/arkode/fcmix/CMakeLists.txt | 75 +-
src/arkode/fcmix/farkband.c | 51 +-
src/arkode/fcmix/farkbandmass.c | 49 +-
src/arkode/fcmix/farkbbd.c | 70 +-
src/arkode/fcmix/farkbbd.h | 599 ++-
src/arkode/fcmix/farkbp.c | 22 +-
src/arkode/fcmix/farkbp.h | 453 +-
src/arkode/fcmix/farkdense.c | 48 +-
src/arkode/fcmix/farkdensemass.c | 37 +-
src/arkode/fcmix/farkjtimes.c | 46 +-
src/arkode/fcmix/farkklu.c | 66 -
src/arkode/fcmix/farklapack.c | 71 -
src/arkode/fcmix/farklapband.c | 103 -
src/arkode/fcmix/farklapbandmass.c | 84 -
src/arkode/fcmix/farklapdense.c | 93 -
src/arkode/fcmix/farklapdensemass.c | 80 -
src/arkode/fcmix/farkmasspreco.c | 35 +-
src/arkode/fcmix/farkmtimes.c | 28 +-
src/arkode/fcmix/farkode.c | 778 ++--
src/arkode/fcmix/farkode.h | 2801 ++++++-------
src/arkode/fcmix/farkpreco.c | 36 +-
src/arkode/fcmix/farkroot.c | 5 +-
src/arkode/fcmix/farkroot.h | 2 +-
src/arkode/fcmix/farksparse.c | 48 +-
src/arkode/fcmix/farksparsemass.c | 40 +-
src/arkode/fcmix/farksuperlumt.c | 53 -
src/cvode/CMakeLists.txt | 137 +-
src/cvode/README | 4 +-
src/cvode/cvode.c | 1703 ++++----
src/cvode/cvode_band.c | 368 --
src/cvode/cvode_bandpre.c | 545 +--
src/cvode/cvode_bandpre_impl.h | 60 +-
src/cvode/cvode_bbdpre.c | 648 +--
src/cvode/cvode_bbdpre_impl.h | 70 +-
src/cvode/cvode_dense.c | 352 --
src/cvode/cvode_diag.c | 15 +-
src/cvode/cvode_diag_impl.h | 5 +-
src/cvode/cvode_direct.c | 756 +++-
src/cvode/cvode_direct_impl.h | 129 +-
src/cvode/cvode_impl.h | 41 +-
src/cvode/cvode_io.c | 104 +-
src/cvode/cvode_klu.c | 612 ---
src/cvode/cvode_lapack.c | 660 ---
src/cvode/cvode_sparse.c | 175 -
src/cvode/cvode_sparse_impl.h | 109 -
src/cvode/cvode_spbcgs.c | 467 ---
src/cvode/cvode_spgmr.c | 471 ---
src/cvode/cvode_spils.c | 1072 +++--
src/cvode/cvode_spils_impl.h | 155 +-
src/cvode/cvode_sptfqmr.c | 465 ---
src/cvode/cvode_superlumt.c | 554 ---
src/cvode/fcmix/CMakeLists.txt | 62 +-
src/cvode/fcmix/fcvband.c | 72 +-
src/cvode/fcmix/fcvbbd.c | 58 +-
src/cvode/fcmix/fcvbbd.h | 584 ++-
src/cvode/fcmix/fcvbp.c | 25 +-
src/cvode/fcmix/fcvbp.h | 421 +-
src/cvode/fcmix/fcvdense.c | 64 +-
src/cvode/fcmix/fcvewt.c | 9 +-
src/cvode/fcmix/fcvjtimes.c | 76 +-
src/cvode/fcmix/fcvklu.c | 52 -
src/cvode/fcmix/fcvlapack.c | 57 -
src/cvode/fcmix/fcvlapband.c | 103 -
src/cvode/fcmix/fcvlapdense.c | 97 -
src/cvode/fcmix/fcvode.c | 254 +-
src/cvode/fcmix/fcvode.h | 1360 +++---
src/cvode/fcmix/fcvpreco.c | 72 +-
src/cvode/fcmix/fcvroot.c | 9 +-
src/cvode/fcmix/fcvroot.h | 5 +-
src/cvode/fcmix/fcvsparse.c | 65 +-
src/cvode/fcmix/fcvsuperlumt.c | 42 -
src/cvodes/CMakeLists.txt | 124 +-
src/cvodes/README | 4 +-
src/cvodes/cvodea.c | 980 ++---
src/cvodes/cvodea_io.c | 95 +-
src/cvodes/cvodes.c | 4326 ++++++++++----------
src/cvodes/cvodes_band.c | 470 ---
src/cvodes/cvodes_bandpre.c | 602 +--
src/cvodes/cvodes_bandpre_impl.h | 63 +-
src/cvodes/cvodes_bbdpre.c | 822 ++--
src/cvodes/cvodes_bbdpre_impl.h | 78 +-
src/cvodes/cvodes_dense.c | 455 --
src/cvodes/cvodes_diag.c | 14 +-
src/cvodes/cvodes_diag_impl.h | 3 -
src/cvodes/cvodes_direct.c | 1145 +++---
src/cvodes/cvodes_direct_impl.h | 187 +-
src/cvodes/cvodes_impl.h | 78 +-
src/cvodes/cvodes_io.c | 236 +-
src/cvodes/cvodes_klu.c | 818 ----
src/cvodes/cvodes_lapack.c | 839 ----
src/cvodes/cvodes_sparse.c | 407 --
src/cvodes/cvodes_sparse_impl.h | 137 -
src/cvodes/cvodes_spbcgs.c | 583 ---
src/cvodes/cvodes_spgmr.c | 589 ---
src/cvodes/cvodes_spils.c | 1930 +++++----
src/cvodes/cvodes_spils_impl.h | 211 +-
src/cvodes/cvodes_sptfqmr.c | 578 ---
src/cvodes/cvodes_superlumt.c | 705 ----
src/ida/CMakeLists.txt | 130 +-
src/ida/README | 4 +-
src/ida/fcmix/CMakeLists.txt | 85 +-
src/ida/fcmix/fida.c | 305 +-
src/ida/fcmix/fida.h | 1745 ++++----
src/ida/fcmix/fidaband.c | 84 +-
src/ida/fcmix/fidabbd.c | 82 +-
src/ida/fcmix/fidabbd.h | 789 ++--
src/ida/fcmix/fidadense.c | 74 +-
src/ida/fcmix/fidaewt.c | 3 -
src/ida/fcmix/fidajtimes.c | 112 +-
src/ida/fcmix/fidaklu.c | 52 -
src/ida/fcmix/fidalapack.c | 58 -
src/ida/fcmix/fidalapband.c | 117 -
src/ida/fcmix/fidalapdense.c | 116 -
src/ida/fcmix/fidapreco.c | 54 +-
src/ida/fcmix/fidaroot.c | 3 -
src/ida/fcmix/fidaroot.h | 5 +-
src/ida/fcmix/fidasparse.c | 65 +-
src/ida/fcmix/fidasuperlumt.c | 42 -
src/ida/ida.c | 1486 ++++---
src/ida/ida_band.c | 328 --
src/ida/ida_bbdpre.c | 635 +--
src/ida/ida_bbdpre_impl.h | 63 +-
src/ida/ida_dense.c | 308 --
src/ida/ida_direct.c | 774 ++--
src/ida/ida_direct_impl.h | 135 +-
src/ida/ida_ic.c | 262 +-
src/ida/ida_impl.h | 28 +-
src/ida/ida_io.c | 136 +-
src/ida/ida_klu.c | 564 ---
src/ida/ida_lapack.c | 570 ---
src/ida/ida_sparse.c | 175 -
src/ida/ida_sparse_impl.h | 127 -
src/ida/ida_spbcgs.c | 482 ---
src/ida/ida_spgmr.c | 482 ---
src/ida/ida_spils.c | 1113 +++--
src/ida/ida_spils_impl.h | 213 +-
src/ida/ida_sptfqmr.c | 482 ---
src/ida/ida_superlumt.c | 522 ---
src/idas/CMakeLists.txt | 122 +-
src/idas/README | 4 +-
src/idas/idaa.c | 1050 +++--
src/idas/idaa_io.c | 67 +-
src/idas/idas.c | 3120 +++++++-------
src/idas/idas_band.c | 431 --
src/idas/idas_bbdpre.c | 792 ++--
src/idas/idas_bbdpre_impl.h | 70 +-
src/idas/idas_dense.c | 410 --
src/idas/idas_direct.c | 1225 +++---
src/idas/idas_direct_impl.h | 182 +-
src/idas/idas_ic.c | 595 ++-
src/idas/idas_impl.h | 71 +-
src/idas/idas_io.c | 276 +-
src/idas/idas_klu.c | 780 ----
src/idas/idas_lapack.c | 758 ----
src/idas/idas_sparse.c | 429 --
src/idas/idas_sparse_impl.h | 127 -
src/idas/idas_spbcgs.c | 595 ---
src/idas/idas_spgmr.c | 587 ---
src/idas/idas_spils.c | 1977 ++++++---
src/idas/idas_spils_impl.h | 247 +-
src/idas/idas_sptfqmr.c | 588 ---
src/idas/idas_superlumt.c | 679 ---
src/kinsol/CMakeLists.txt | 131 +-
src/kinsol/README | 4 +-
src/kinsol/fcmix/CMakeLists.txt | 85 +-
src/kinsol/fcmix/fkinband.c | 45 +-
src/kinsol/fcmix/fkinbbd.c | 49 +-
src/kinsol/fcmix/fkinbbd.h | 91 +-
src/kinsol/fcmix/fkindense.c | 41 +-
src/kinsol/fcmix/fkinjtimes.c | 47 +-
src/kinsol/fcmix/fkinklu.c | 52 -
src/kinsol/fcmix/fkinlapack.c | 47 -
src/kinsol/fcmix/fkinlapband.c | 117 -
src/kinsol/fcmix/fkinlapdense.c | 105 -
src/kinsol/fcmix/fkinpreco.c | 117 +-
src/kinsol/fcmix/fkinsol.c | 287 +-
src/kinsol/fcmix/fkinsol.h | 594 ++-
src/kinsol/fcmix/fkinsparse.c | 50 +-
src/kinsol/fcmix/fkinsuperlumt.c | 42 -
src/kinsol/kinsol.c | 1068 +++--
src/kinsol/kinsol_band.c | 357 --
src/kinsol/kinsol_bbdpre.c | 652 +--
src/kinsol/kinsol_bbdpre_impl.h | 68 +-
src/kinsol/kinsol_dense.c | 339 --
src/kinsol/kinsol_direct.c | 724 ++--
src/kinsol/kinsol_direct_impl.h | 99 +-
src/kinsol/kinsol_impl.h | 17 +-
src/kinsol/kinsol_io.c | 10 +-
src/kinsol/kinsol_klu.c | 575 ---
src/kinsol/kinsol_lapack.c | 616 ---
src/kinsol/kinsol_sparse.c | 178 -
src/kinsol/kinsol_sparse_impl.h | 92 -
src/kinsol/kinsol_spbcgs.c | 442 --
src/kinsol/kinsol_spfgmr.c | 451 --
src/kinsol/kinsol_spgmr.c | 443 --
src/kinsol/kinsol_spils.c | 1039 +++--
src/kinsol/kinsol_spils_impl.h | 189 +-
src/kinsol/kinsol_sptfqmr.c | 436 --
src/kinsol/kinsol_superlumt.c | 506 ---
src/nvec_cuda/CMakeLists.txt | 75 +
src/nvec_cuda/nvector_cuda.cu | 459 +++
src/nvec_openmp/CMakeLists.txt | 25 +-
src/nvec_openmp/README | 6 +-
src/nvec_openmp/fnvector_openmp.c | 9 +-
src/nvec_openmp/fnvector_openmp.h | 11 +-
src/nvec_openmp/nvector_openmp.c | 121 +-
src/nvec_par/CMakeLists.txt | 25 +-
src/nvec_par/README | 4 +-
src/nvec_par/fnvector_parallel.c | 11 +-
src/nvec_par/fnvector_parallel.h | 11 +-
src/nvec_par/nvector_parallel.c | 136 +-
src/nvec_parhyp/CMakeLists.txt | 12 +-
src/nvec_parhyp/README | 4 +-
src/nvec_parhyp/nvector_parhyp.c | 103 +-
src/nvec_petsc/CMakeLists.txt | 21 +-
src/nvec_petsc/README | 4 +-
src/nvec_petsc/nvector_petsc.c | 130 +-
src/nvec_pthreads/CMakeLists.txt | 26 +-
src/nvec_pthreads/README | 6 +-
src/nvec_pthreads/fnvector_pthreads.c | 9 +-
src/nvec_pthreads/fnvector_pthreads.h | 11 +-
src/nvec_pthreads/nvector_pthreads.c | 189 +-
src/nvec_raja/CMakeLists.txt | 83 +
src/nvec_raja/nvector_raja.cu | 617 +++
src/nvec_ser/CMakeLists.txt | 25 +-
src/nvec_ser/README | 5 +-
src/nvec_ser/fnvector_serial.c | 9 +-
src/nvec_ser/fnvector_serial.h | 11 +-
src/nvec_ser/nvector_serial.c | 127 +-
src/sundials/CMakeLists.txt | 13 +-
src/sundials/README | 5 +-
src/sundials/sundials_band.c | 40 +-
src/sundials/sundials_dense.c | 50 +-
src/sundials/sundials_direct.c | 75 +-
src/sundials/sundials_iterative.c | 4 +-
src/sundials/sundials_linearsolver.c | 136 +
src/sundials/sundials_math.c | 4 +-
src/sundials/sundials_matrix.c | 86 +
src/sundials/sundials_nvector.c | 6 +-
src/sundials/sundials_pcg.c | 10 +-
src/sundials/sundials_sparse.c | 4 +-
src/sundials/sundials_spbcgs.c | 24 +-
src/sundials/sundials_spfgmr.c | 6 +-
src/sundials/sundials_spgmr.c | 18 +-
src/sundials/sundials_sptfqmr.c | 42 +-
src/sundials/sundials_version.c | 48 +
src/sunlinsol_band/CMakeLists.txt | 105 +
src/sunlinsol_band/README | 41 +
src/sunlinsol_band/fsunlinsol_band.c | 100 +
src/sunlinsol_band/fsunlinsol_band.h | 66 +
src/sunlinsol_band/sunlinsol_band.c | 281 ++
src/sunlinsol_dense/CMakeLists.txt | 104 +
src/sunlinsol_dense/README | 41 +
src/sunlinsol_dense/fsunlinsol_dense.c | 100 +
src/sunlinsol_dense/fsunlinsol_dense.h | 66 +
src/sunlinsol_dense/sunlinsol_dense.c | 267 ++
src/sunlinsol_klu/CMakeLists.txt | 116 +
src/sunlinsol_klu/README | 40 +
src/sunlinsol_klu/fsunlinsol_klu.c | 161 +
src/sunlinsol_klu/fsunlinsol_klu.h | 85 +
src/sunlinsol_klu/sunlinsol_klu.c | 445 ++
src/sunlinsol_lapackband/CMakeLists.txt | 107 +
src/sunlinsol_lapackband/README | 37 +
src/sunlinsol_lapackband/fsunlinsol_lapackband.c | 98 +
src/sunlinsol_lapackband/fsunlinsol_lapackband.h | 66 +
src/sunlinsol_lapackband/sunlinsol_lapackband.c | 275 ++
src/sunlinsol_lapackdense/CMakeLists.txt | 113 +
src/sunlinsol_lapackdense/README | 37 +
src/sunlinsol_lapackdense/fsunlinsol_lapackdense.c | 96 +
src/sunlinsol_lapackdense/fsunlinsol_lapackdense.h | 66 +
src/sunlinsol_lapackdense/sunlinsol_lapackdense.c | 266 ++
src/sunlinsol_pcg/CMakeLists.txt | 107 +
src/sunlinsol_pcg/README | 40 +
src/sunlinsol_pcg/fsunlinsol_pcg.c | 195 +
src/sunlinsol_pcg/fsunlinsol_pcg.h | 84 +
src/sunlinsol_pcg/sunlinsol_pcg.c | 470 +++
src/sunlinsol_spbcgs/CMakeLists.txt | 107 +
src/sunlinsol_spbcgs/README | 41 +
src/sunlinsol_spbcgs/fsunlinsol_spbcgs.c | 195 +
src/sunlinsol_spbcgs/fsunlinsol_spbcgs.h | 84 +
src/sunlinsol_spbcgs/sunlinsol_spbcgs.c | 617 +++
src/sunlinsol_spfgmr/CMakeLists.txt | 107 +
src/sunlinsol_spfgmr/README | 41 +
src/sunlinsol_spfgmr/fsunlinsol_spfgmr.c | 245 ++
src/sunlinsol_spfgmr/fsunlinsol_spfgmr.h | 92 +
src/sunlinsol_spfgmr/sunlinsol_spfgmr.c | 655 +++
src/sunlinsol_spgmr/CMakeLists.txt | 107 +
src/sunlinsol_spgmr/README | 41 +
src/sunlinsol_spgmr/fsunlinsol_spgmr.c | 245 ++
src/sunlinsol_spgmr/fsunlinsol_spgmr.h | 92 +
src/sunlinsol_spgmr/sunlinsol_spgmr.c | 701 ++++
src/sunlinsol_sptfqmr/CMakeLists.txt | 106 +
src/sunlinsol_sptfqmr/README | 41 +
src/sunlinsol_sptfqmr/fsunlinsol_sptfqmr.c | 195 +
src/sunlinsol_sptfqmr/fsunlinsol_sptfqmr.h | 84 +
src/sunlinsol_sptfqmr/sunlinsol_sptfqmr.c | 743 ++++
src/sunlinsol_superlumt/CMakeLists.txt | 127 +
src/sunlinsol_superlumt/README | 41 +
src/sunlinsol_superlumt/fsunlinsol_superlumt.c | 136 +
src/sunlinsol_superlumt/fsunlinsol_superlumt.h | 74 +
src/sunlinsol_superlumt/sunlinsol_superlumt.c | 422 ++
src/sunmat_band/CMakeLists.txt | 104 +
src/sunmat_band/README | 48 +
src/sunmat_band/fsunmatrix_band.c | 84 +
src/sunmat_band/fsunmatrix_band.h | 68 +
src/sunmat_band/sunmatrix_band.c | 482 +++
src/sunmat_dense/CMakeLists.txt | 104 +
src/sunmat_dense/README | 44 +
src/sunmat_dense/fsunmatrix_dense.c | 82 +
src/sunmat_dense/fsunmatrix_dense.h | 66 +
src/sunmat_dense/sunmatrix_dense.c | 352 ++
src/sunmat_sparse/CMakeLists.txt | 104 +
src/sunmat_sparse/README | 48 +
src/sunmat_sparse/fsunmatrix_sparse.c | 83 +
src/sunmat_sparse/fsunmatrix_sparse.h | 69 +
src/sunmat_sparse/sunmatrix_sparse.c | 1004 +++++
test/testRunner | 394 ++
925 files changed, 88812 insertions(+), 85445 deletions(-)
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