[python-escript] branch debian updated (bc1ec20 -> ff2a920)
Joel Fenwick
jfenwick-guest at moszumanska.debian.org
Thu Nov 30 01:07:11 UTC 2017
This is an automated email from the git hooks/post-receive script.
jfenwick-guest pushed a change to branch debian
in repository python-escript.
from bc1ec20 Update changelog.
new dae92b3 Upstream 5.1 - with modified /debian
new fed2b67 Spelling errors found by lintian
new ff2a920 Use libjs-mathjax instead of external site
The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
SConstruct | 58 +-
cusplibrary/SConscript | 2 +-
cusplibrary/build/build-env.py | 2 +-
cusplibrary/build/nvcc.py | 2 +-
cusplibrary/performance/spmv/scripts/benchmark.py | 2 +-
cusplibrary/testing/data/random_10x10/generator.py | 2 +-
debian/changelog | 7 +
debian/control | 6 +-
debian/copyright | 13 -
debian/patches/fixmathjax | 11 +
debian/patches/fixopenmpiconf | 1 +
debian/patches/fixsphinxversion | 14 +
debian/patches/manspelling | 40 +
debian/patches/nodatedoxygen | 12 -
debian/patches/rootintar | 1 +
debian/patches/series | 13 +-
debian/utils/cppy.py | 2 +-
doc/SConscript | 2 +-
doc/completedevs.tex | 7 +-
doc/cookbook/SConscript | 2 +-
doc/cookbook/cookbook.bib | 2 +-
doc/cookbook/cookbook.tex | 7 +-
doc/cookbook/cookbook_defs.tex | 2 +-
doc/cookbook/einsteinETA.tex | 2 +-
doc/cookbook/escpybas.tex | 2 +-
doc/cookbook/example01.tex | 2 +-
doc/cookbook/example02.tex | 2 +-
doc/cookbook/example03.tex | 2 +-
doc/cookbook/example04.tex | 2 +-
doc/cookbook/example05.tex | 2 +-
doc/cookbook/example07.tex | 2 +-
doc/cookbook/example08.tex | 2 +-
doc/cookbook/example09.tex | 2 +-
doc/cookbook/example10.tex | 2 +-
doc/cookbook/example11.tex | 2 +-
doc/cookbook/intro.tex | 2 +-
doc/cookbook/quickstart.tex | 2 +-
doc/copyrights.tex | 4 +-
doc/currentdev.tex | 7 +-
doc/docguide.tex | 2 +-
doc/doxygen/SConscript | 2 +-
doc/doxygen/doxygen_esys | 2 +-
doc/elist.tex | 2 +-
doc/epydoc/SConscript | 2 +-
doc/examples/SConscript | 2 +-
doc/examples/cookbook/cblib.py | 4 +-
doc/examples/cookbook/cblib1.py | 4 +-
doc/examples/cookbook/cerjen.py | 2 +-
doc/examples/cookbook/example01a.py | 4 +-
doc/examples/cookbook/example01b.py | 4 +-
doc/examples/cookbook/example01c.py | 4 +-
doc/examples/cookbook/example02.py | 4 +-
doc/examples/cookbook/example03a.py | 4 +-
doc/examples/cookbook/example03b.py | 4 +-
doc/examples/cookbook/example04a.py | 4 +-
doc/examples/cookbook/example04b.py | 4 +-
doc/examples/cookbook/example05a.py | 4 +-
doc/examples/cookbook/example05b.py | 4 +-
doc/examples/cookbook/example05c.py | 4 +-
doc/examples/cookbook/example06.py | 4 +-
doc/examples/cookbook/example07a.py | 4 +-
doc/examples/cookbook/example07b.py | 4 +-
doc/examples/cookbook/example08a.py | 4 +-
doc/examples/cookbook/example08b.py | 4 +-
doc/examples/cookbook/example08c.py | 4 +-
doc/examples/cookbook/example09a.py | 4 +-
doc/examples/cookbook/example09b.py | 4 +-
doc/examples/cookbook/example09c.py | 4 +-
doc/examples/cookbook/example09m.py | 4 +-
doc/examples/cookbook/example09n.py | 4 +-
doc/examples/cookbook/example10a.py | 4 +-
doc/examples/cookbook/example10b.py | 4 +-
doc/examples/cookbook/example10c_0.py | 4 +-
doc/examples/cookbook/example10c_1.py | 4 +-
doc/examples/cookbook/example10d.py | 4 +-
doc/examples/cookbook/example10e.py | 4 +-
doc/examples/cookbook/example10m.py | 4 +-
doc/examples/cookbook/example10p.py | 4 +-
doc/examples/cookbook/example11a.py | 4 +-
doc/examples/cookbook/example11b.py | 4 +-
doc/examples/cookbook/example11c.py | 4 +-
doc/examples/cookbook/example11m.py | 4 +-
doc/examples/cookbook/wave_stab.py | 4 +-
doc/examples/cookbook/wavesolver2d001.py | 4 +-
doc/examples/cookbook/wavesolver2d002.py | 4 +-
doc/examples/cookbook/wavesolver2d003.py | 4 +-
doc/examples/cookbook/wavesolver2d004.py | 4 +-
doc/examples/geotutorial/backward_euler.py | 4 +-
doc/examples/geotutorial/forward_euler.py | 4 +-
doc/examples/geotutorial/myfirstscript.py | 4 +-
doc/examples/geotutorial/steadystate.py | 4 +-
doc/examples/geotutorial/steadystate_variablek.py | 4 +-
doc/examples/inversion/create_netcdf.py | 2 +-
doc/examples/inversion/dc_forward.py | 2 +-
doc/examples/inversion/grav_ermapper.py | 4 +-
doc/examples/inversion/grav_netcdf.py | 4 +-
doc/examples/inversion/gravmag_netcdf.py | 4 +-
doc/examples/inversion/gravmag_nodriver.py | 4 +-
doc/examples/inversion/gravmag_wgs84_nodriver.py | 4 +-
doc/examples/inversion/mag_netcdf.py | 4 +-
doc/examples/inversion/mag_wgs84_netcdf.py | 4 +-
.../inversion/{mag_netcdf.py => magi_netcdf.py} | 9 +-
doc/examples/inversion/plot_ermapper.py | 2 +-
doc/examples/inversion/plot_netcdf.py | 2 +-
doc/examples/inversion/strong_gravmag_netcdf.py | 4 +-
doc/examples/inversion/synthetic_HTI.py | 2 +-
doc/examples/inversion/synthetic_TTI.py | 4 +-
doc/examples/inversion/synthetic_VTI.py | 4 +-
doc/examples/inversion/synthetic_sonic.py | 4 +-
doc/examples/inversion/synthetic_sonicHTI.py | 4 +-
doc/examples/inversion/test_commemi1.py | 2 +-
doc/examples/inversion/test_commemi4.py | 2 +-
doc/examples/usersguide/brick.py | 4 +-
doc/examples/usersguide/brick_stl.py | 4 +-
doc/examples/usersguide/darcy.py | 4 +-
doc/examples/usersguide/diffusion.py | 4 +-
doc/examples/usersguide/dirac.py | 4 +-
doc/examples/usersguide/fluid.py | 2 +-
doc/examples/usersguide/heatedblock.py | 4 +-
doc/examples/usersguide/helmholtz.py | 4 +-
doc/examples/usersguide/int_save.py | 4 +-
doc/examples/usersguide/lame.py | 2 +-
doc/examples/usersguide/lid_driven_cavity.py | 4 +-
doc/examples/usersguide/mount.py | 4 +-
doc/examples/usersguide/poisson.py | 4 +-
doc/examples/usersguide/poisson_matplotlib.py | 4 +-
doc/examples/usersguide/poisson_vtk.py | 4 +-
doc/examples/usersguide/quad.py | 4 +-
doc/examples/usersguide/refine.py | 4 +-
doc/examples/usersguide/slip.py | 4 +-
doc/examples/usersguide/trapezoid.py | 4 +-
doc/examples/usersguide/voxet_reader.py | 2 +-
doc/examples/usersguide/wave.py | 4 +-
doc/install/SConscript | 2 +-
doc/install/allsrccommon.tex | 2 +-
doc/install/binlinux.tex | 2 +-
doc/install/binmac.tex | 2 +-
doc/install/chcomp.tex | 2 +-
doc/install/compiler.tex | 2 +-
doc/install/cxx11.tex | 3 +
doc/install/debbin.tex | 2 +-
doc/install/install.tex | 5 +-
doc/install/install_defs.tex | 2 +-
doc/install/intro.tex | 8 +-
doc/install/source.tex | 59 +-
doc/install/srcadditional.tex | 2 +-
doc/install/srclinux.tex | 2 +-
doc/install/srcmac.tex | 2 +-
doc/install/trilinos.tex | 100 +
doc/inversion/CookDcRes.tex | 2 +-
doc/inversion/Forward2DMTTEMode.tex | 2 +-
doc/inversion/ForwardDCRES.tex | 2 +-
doc/inversion/ForwardGravity.tex | 2 +-
doc/inversion/ForwardMagnetic.tex | 2 +-
doc/inversion/ForwardMagneticIntensity.tex | 172 +
doc/inversion/ForwardModels.tex | 1 +
doc/inversion/ForwardSelfMagnetic.tex | 2 +-
doc/inversion/Minimization.tex | 2 +-
doc/inversion/SConscript | 2 +-
doc/inversion/defs.tex | 2 +-
doc/inversion/intro.tex | 2 +-
doc/inversion/inversion.tex | 4 +-
doc/sphinx_api/SConscript | 2 +-
doc/sphinx_api/genrst.py | 2 +-
doc/user/Models.tex | 2 +-
doc/user/SConscript | 2 +-
doc/user/TutorialPDE.tex | 2 +-
doc/user/appendix.tex | 2 +-
doc/user/changes.tex | 22 +-
doc/user/darcyflux.tex | 2 +-
doc/user/diffusion.tex | 2 +-
doc/user/dirac.tex | 2 +-
doc/user/escript.tex | 2 +-
doc/user/execute.tex | 2 +-
doc/user/faultsystem.tex | 2 +-
doc/user/finley.tex | 2 +-
doc/user/finleyelements.tex | 2 +-
doc/user/firststep.tex | 2 +-
doc/user/heatedblock.tex | 2 +-
doc/user/levelset.tex | 2 +-
doc/user/levelsetmodel.tex | 2 +-
doc/user/linearPDE.tex | 2 +-
doc/user/lumping.tex | 2 +-
doc/user/modelframe.tex | 2 +-
doc/user/nonlinearPDE.tex | 2 +-
doc/user/notation.tex | 2 +-
doc/user/ourrefs.tex | 2 +-
doc/user/py3.tex | 4 +-
doc/user/pycad.tex | 2 +-
doc/user/ripley.tex | 2 +-
doc/user/slip.tex | 2 +-
doc/user/speckley.tex | 2 +-
doc/user/stokesflow.tex | 2 +-
doc/user/stokessolver.tex | 2 +-
doc/user/subworlds.tex | 2 +-
doc/user/symbolic.tex | 2 +-
doc/user/user.tex | 3 +-
doc/user/user_defs.tex | 2 +-
doc/user/wave.tex | 2 +-
doc/user/weipa.tex | 2 +-
doc/verinfo.tex | 8 +-
downunder/py_src/SConscript | 2 +-
downunder/py_src/__init__.py | 4 +-
downunder/py_src/coordinates.py | 4 +-
downunder/py_src/costfunctions.py | 4 +-
downunder/py_src/datasources.py | 12 +-
downunder/py_src/dcresistivityforwardmodeling.py | 2 +-
downunder/py_src/domainbuilder.py | 4 +-
downunder/py_src/forwardmodels/__init__.py | 4 +-
downunder/py_src/forwardmodels/acoustic.py | 4 +-
downunder/py_src/forwardmodels/base.py | 33 +-
downunder/py_src/forwardmodels/dcresistivity.py | 4 +-
downunder/py_src/forwardmodels/gravity.py | 4 +-
downunder/py_src/forwardmodels/magnetic.py | 141 +-
.../py_src/forwardmodels/magnetotelluric2d.py | 4 +-
downunder/py_src/forwardmodels/pressure.py | 4 +-
downunder/py_src/forwardmodels/subsidence.py | 4 +-
downunder/py_src/inversioncostfunctions.py | 4 +-
downunder/py_src/inversions.py | 68 +-
downunder/py_src/mappings.py | 4 +-
downunder/py_src/minimizers.py | 5 +-
downunder/py_src/regularizations.py | 4 +-
downunder/py_src/seismic.py | 4 +-
downunder/py_src/splitinversioncostfunctions.py | 4 +-
downunder/py_src/splitminimizers.py | 2 +-
downunder/py_src/splitregularizations.py | 4 +-
downunder/test/python/SConscript | 2 +-
downunder/test/python/inversion_acoustictest_2d.py | 4 +-
downunder/test/python/run_comm1.py | 4 +-
downunder/test/python/run_comm4.py | 2 +-
downunder/test/python/run_coordinates.py | 4 +-
downunder/test/python/run_datasources.py | 6 +-
downunder/test/python/run_dcforward.py | 2 +-
downunder/test/python/run_domainbuilder.py | 4 +-
downunder/test/python/run_forward.py | 11 +-
downunder/test/python/run_gravity.py | 4 +-
downunder/test/python/run_inversion_gravmag_2d.py | 4 +-
downunder/test/python/run_inversioncostfunction.py | 4 +-
downunder/test/python/run_magnetic.py | 4 +-
downunder/test/python/run_mappings.py | 4 +-
downunder/test/python/run_minimizers.py | 4 +-
downunder/test/python/run_regularization.py | 4 +-
downunder/test/python/run_seismic.py | 4 +-
dudley/SConscript | 2 +-
dudley/benchmarks/dudleybench.py | 4 +-
dudley/benchmarks/runbenchmark.py | 4 +-
dudley/py_src/SConscript | 2 +-
dudley/py_src/__init__.py | 4 +-
dudley/py_src/factorywrappers.py | 4 +-
dudley/py_src/readers.py | 4 +-
dudley/src/Assemble.h | 10 +-
dudley/src/Assemble_AverageElementData.cpp | 37 +-
dudley/src/Assemble_CopyElementData.cpp | 35 +-
dudley/src/Assemble_CopyNodalData.cpp | 109 +-
dudley/src/Assemble_LumpedSystem.cpp | 19 +-
dudley/src/Assemble_NodeCoordinates.cpp | 9 +-
dudley/src/Assemble_PDE.cpp | 2 +-
dudley/src/Assemble_PDE_Points.cpp | 2 +-
dudley/src/Assemble_PDE_Single_2D.cpp | 2 +-
dudley/src/Assemble_PDE_Single_3D.cpp | 2 +-
dudley/src/Assemble_PDE_System_2D.cpp | 2 +-
dudley/src/Assemble_PDE_System_3D.cpp | 2 +-
dudley/src/Assemble_addToSystemMatrix.cpp | 2 +-
dudley/src/Assemble_getAssembleParameters.cpp | 2 +-
dudley/src/Assemble_getNormal.cpp | 8 +-
dudley/src/Assemble_getSize.cpp | 8 +-
dudley/src/Assemble_gradient.cpp | 90 +-
dudley/src/Assemble_integrate.cpp | 31 +-
dudley/src/Assemble_interpolate.cpp | 27 +-
dudley/src/Assemble_jacobians.cpp | 2 +-
dudley/src/DomainFactory.cpp | 306 +-
dudley/src/DomainFactory.h | 2 +-
dudley/src/Dudley.h | 2 +-
dudley/src/DudleyDomain.cpp | 450 +-
dudley/src/DudleyDomain.h | 11 +-
dudley/src/DudleyException.h | 2 +-
dudley/src/DudleyVersion.h | 4 +-
dudley/src/ElementFile.cpp | 11 +-
dudley/src/ElementFile.h | 2 +-
dudley/src/ElementFile_createColoring.cpp | 2 +-
dudley/src/ElementFile_distributeByRankOfDOF.cpp | 2 +-
dudley/src/ElementFile_jacobians.cpp | 2 +-
dudley/src/ElementType.h | 2 +-
dudley/src/IndexList.cpp | 2 +-
dudley/src/IndexList.h | 2 +-
dudley/src/Mesh_distributeByRankOfDOF.cpp | 2 +-
dudley/src/Mesh_getPattern.cpp | 2 +-
dudley/src/Mesh_optimizeDOFDistribution.cpp | 2 +-
dudley/src/Mesh_optimizeDOFLabeling.cpp | 2 +-
dudley/src/Mesh_read.cpp | 2 +-
dudley/src/Mesh_readGmsh.cpp | 2 +-
dudley/src/Mesh_resolveNodeIds.cpp | 2 +-
dudley/src/Mesh_tet4.cpp | 2 +-
dudley/src/Mesh_tri3.cpp | 2 +-
dudley/src/Mesh_write.cpp | 2 +-
dudley/src/NodeFile.cpp | 15 +-
dudley/src/NodeFile.h | 2 +-
dudley/src/NodeFile_createDenseLabelings.cpp | 2 +-
dudley/src/NodeFile_createMappings.cpp | 2 +-
dudley/src/NodeFile_createTrilinosGraph.cpp | 2 +-
dudley/src/NodeFile_gather.cpp | 2 +-
dudley/src/NodeMapping.h | 2 +-
dudley/src/SConscript | 2 +-
dudley/src/ShapeTable.cpp | 2 +-
dudley/src/ShapeTable.h | 2 +-
dudley/src/Util.cpp | 16 +-
dudley/src/Util.h | 7 +-
dudley/src/dudleycpp.cpp | 2 +-
dudley/src/generateReferenceElementList.py | 2 +-
dudley/test/DudleyDomainTestCase.cpp | 2 +-
dudley/test/DudleyDomainTestCase.h | 2 +-
dudley/test/SConscript | 2 +-
dudley/test/dudley_UnitTests.cpp | 2 +-
dudley/test/python/FCT_benchmark.py | 4 +-
dudley/test/python/FCT_test1.py | 4 +-
dudley/test/python/FCT_test2.py | 4 +-
dudley/test/python/OutTest.py | 4 +-
dudley/test/python/PoissonSolverTest.py | 4 +-
dudley/test/python/RT2D.py | 4 +-
dudley/test/python/RecTest.py | 4 +-
dudley/test/python/SConscript | 2 +-
dudley/test/python/axisymm-splitB.py | 4 +-
dudley/test/python/blocktest.py | 4 +-
dudley/test/python/brick.py | 4 +-
dudley/test/python/convection.py | 4 +-
dudley/test/python/fixme_run_generators.py | 4 +-
dudley/test/python/generate_dumps.py | 4 +-
dudley/test/python/generate_meshes.py | 4 +-
dudley/test/python/linearElastic.py | 4 +-
dudley/test/python/rayleigh_taylor_instabilty.py | 4 +-
dudley/test/python/rectangle.py | 4 +-
dudley/test/python/run_escriptOnDudley.py | 4 +-
dudley/test/python/run_inputOutput.py | 4 +-
dudley/test/python/run_linearPDEsOnDudley1.py | 4 +-
dudley/test/python/run_linearPDEsOnDudley2.py | 4 +-
dudley/test/python/run_models.py | 4 +-
dudley/test/python/run_nonlinearPDEsOnDudley.py | 4 +-
dudley/test/python/run_pasoSolversOnDudley.py | 4 +-
dudley/test/python/run_splitworldOnDudley.py | 4 +-
dudley/test/python/run_trilinosSolversOnDudley.py | 4 +-
dudley/test/python/run_utilOnDudley.py | 4 +-
dudley/test/python/seismic_wave.py | 4 +-
dudley/test/python/slip_stress_mesh_old.py | 4 +-
dudley/test/python/slip_stress_old.py | 4 +-
dudley/test/python/stokes_problems.py | 4 +-
dudley/test/python/subduction1.py | 4 +-
dudley/test/python/subduction1_gen.py | 4 +-
dudley/test/python/time_chunks.py | 4 +-
dudley/test/python/tp.py | 4 +-
escript/py_src/SConscript | 2 +-
escript/py_src/__init__.py | 4 +-
escript/py_src/datamanager.py | 2 +-
escript/py_src/linearPDEs.py | 2 +-
escript/py_src/modelframe.py | 2 +-
escript/py_src/models.py | 2 +-
escript/py_src/pdetools.py | 2 +-
escript/py_src/splitworld.py | 2 +-
escript/py_src/symbolic.py | 2 +-
escript/py_src/unitsSI.py | 2 +-
escript/py_src/util.py | 2 +-
escriptcore/SConscript | 2 +-
escriptcore/py_src/SConscript | 2 +-
escriptcore/py_src/__init__.py | 4 +-
escriptcore/py_src/benchmark.py | 4 +-
escriptcore/py_src/datamanager.py | 4 +-
escriptcore/py_src/domainCouplers.py | 4 +-
escriptcore/py_src/faultsystems.py | 4 +-
escriptcore/py_src/flows.py | 4 +-
escriptcore/py_src/gmshrunner.py | 4 +-
escriptcore/py_src/heat.py | 4 +-
escriptcore/py_src/levelset.py | 13 +-
escriptcore/py_src/linearPDEs.py | 104 +-
escriptcore/py_src/modelframe.py | 4 +-
escriptcore/py_src/models.py | 4 +-
escriptcore/py_src/mountains.py | 4 +-
escriptcore/py_src/nonlinearPDE.py | 4 +-
escriptcore/py_src/pdetools.py | 28 +-
escriptcore/py_src/rheologies.py | 4 +-
escriptcore/py_src/runmodel.py | 4 +-
escriptcore/py_src/splitworld.py | 4 +-
escriptcore/py_src/start.py | 4 +-
escriptcore/py_src/symbolic/__init__.py | 4 +-
escriptcore/py_src/symbolic/evaluator.py | 4 +-
escriptcore/py_src/symbolic/functions.py | 4 +-
escriptcore/py_src/symbolic/pretty.py | 4 +-
escriptcore/py_src/symbolic/symbol.py | 4 +-
escriptcore/py_src/symbolic/symconstants.py | 2 +-
escriptcore/py_src/symbolic/utils.py | 4 +-
escriptcore/py_src/testing.py | 4 +-
escriptcore/py_src/unitsSI.py | 6 +-
escriptcore/py_src/utestselect.py | 4 +-
escriptcore/py_src/util.py | 100 +-
escriptcore/src/AbstractContinuousDomain.cpp | 14 +-
escriptcore/src/AbstractContinuousDomain.h | 7 +-
escriptcore/src/AbstractDomain.cpp | 2 +-
escriptcore/src/AbstractDomain.h | 2 +-
escriptcore/src/AbstractReducer.cpp | 2 +-
escriptcore/src/AbstractReducer.h | 2 +-
escriptcore/src/AbstractSystemMatrix.cpp | 2 +-
escriptcore/src/AbstractSystemMatrix.h | 2 +-
escriptcore/src/AbstractTransportProblem.cpp | 4 +-
escriptcore/src/AbstractTransportProblem.h | 4 +-
escriptcore/src/ArrayOps.cpp | 5 +-
escriptcore/src/ArrayOps.h | 47 +-
escriptcore/src/Assert.h | 2 +-
escriptcore/src/BinaryDataReadyOps.cpp | 7 +-
escriptcore/src/BinaryDataReadyOps.h | 2 +-
escriptcore/src/Data.cpp | 462 +-
escriptcore/src/Data.h | 36 +-
escriptcore/src/DataAbstract.cpp | 2 +-
escriptcore/src/DataAbstract.h | 12 +-
escriptcore/src/DataConstant.cpp | 192 +-
escriptcore/src/DataConstant.h | 11 +-
escriptcore/src/DataEmpty.cpp | 8 +-
escriptcore/src/DataEmpty.h | 11 +-
escriptcore/src/DataException.h | 2 +-
escriptcore/src/DataExpanded.cpp | 253 +-
escriptcore/src/DataExpanded.h | 11 +-
escriptcore/src/DataFactory.cpp | 354 +-
escriptcore/src/DataFactory.h | 28 +-
escriptcore/src/DataLazy.cpp | 1164 +-
escriptcore/src/DataLazy.h | 68 +-
escriptcore/src/DataReady.cpp | 2 +-
escriptcore/src/DataReady.h | 2 +-
escriptcore/src/DataTagged.cpp | 219 +-
escriptcore/src/DataTagged.h | 14 +-
escriptcore/src/DataTypes.cpp | 2 +-
escriptcore/src/DataTypes.h | 2 +-
escriptcore/src/DataVector.cpp | 2 +-
escriptcore/src/DataVector.h | 2 +-
escriptcore/src/DataVectorAlt.h | 20 +-
escriptcore/src/DataVectorOps.cpp | 2 +-
escriptcore/src/DataVectorOps.h | 51 +-
escriptcore/src/DataVectorTaipan.cpp | 2 +-
escriptcore/src/DataVectorTaipan.h | 2 +-
escriptcore/src/Distribution.h | 2 +-
escriptcore/src/Dodgy.cpp | 2 +-
escriptcore/src/Dodgy.h | 2 +-
escriptcore/src/DomainException.h | 2 +-
escriptcore/src/ES_optype.cpp | 45 +-
escriptcore/src/ES_optype.h | 15 +-
escriptcore/src/EscriptParams.cpp | 6 +-
escriptcore/src/EscriptParams.h | 2 +-
escriptcore/src/EsysException.h | 2 +-
escriptcore/src/EsysMPI.cpp | 2 +-
escriptcore/src/EsysMPI.h | 2 +-
escriptcore/src/ExceptionTranslators.cpp | 2 +-
escriptcore/src/ExceptionTranslators.h | 2 +-
escriptcore/src/FileWriter.h | 2 +-
escriptcore/src/FunctionSpace.cpp | 2 +-
escriptcore/src/FunctionSpace.h | 2 +-
escriptcore/src/FunctionSpaceException.h | 2 +-
escriptcore/src/FunctionSpaceFactory.cpp | 2 +-
escriptcore/src/FunctionSpaceFactory.h | 2 +-
escriptcore/src/IndexList.h | 2 +-
escriptcore/src/LapackInverseHelper.cpp | 2 +-
escriptcore/src/LapackInverseHelper.h | 2 +-
escriptcore/src/MPIDataReducer.cpp | 2 +-
escriptcore/src/MPIDataReducer.h | 2 +-
escriptcore/src/MPIScalarReducer.cpp | 2 +-
escriptcore/src/MPIScalarReducer.h | 2 +-
escriptcore/src/NCHelper.cpp | 68 +
.../DudleyVersion.h => escriptcore/src/NCHelper.h | 15 +-
escriptcore/src/NonReducedVariable.cpp | 2 +-
escriptcore/src/NonReducedVariable.h | 2 +-
escriptcore/src/NullDomain.cpp | 2 +-
escriptcore/src/NullDomain.h | 2 +-
escriptcore/src/Pointers.h | 2 +-
escriptcore/src/Random.cpp | 2 +-
escriptcore/src/Random.h | 2 +-
escriptcore/src/SConscript | 4 +-
escriptcore/src/SolverOptions.cpp | 2 +-
escriptcore/src/SolverOptions.h | 2 +-
escriptcore/src/SplitWorld.cpp | 2 +-
escriptcore/src/SplitWorld.h | 2 +-
escriptcore/src/SplitWorldException.h | 2 +-
escriptcore/src/SubWorld.cpp | 2 +-
escriptcore/src/SubWorld.h | 2 +-
escriptcore/src/SystemMatrixException.h | 2 +-
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escriptcore/src/Taipan.h | 2 +-
escriptcore/src/TestDomain.cpp | 2 +-
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escriptcore/src/WrappedArray.cpp | 2 +-
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escriptcore/src/escriptcpp.cpp | 5 +-
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escriptcore/test/multi_arrayTestCase.h | 2 +-
escriptcore/test/python/SConscript | 2 +-
escriptcore/test/python/run_data_access.py | 4 +-
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escriptcore/test/python/run_testdomain.py | 11 +-
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escriptcore/test/python/run_xml.py | 4 +-
escriptcore/test/python/test_assemblage.py | 4 +-
escriptcore/test/python/test_assemblage_2Do1.py | 17890 -----
escriptcore/test/python/test_assemblage_2Do2.py | 18022 -----
escriptcore/test/python/test_assemblage_3Do1.py | 34177 ---------
escriptcore/test/python/test_assemblage_3Do2.py | 4 +-
escriptcore/test/python/test_condEval.py | 4 +-
escriptcore/test/python/test_linearPDEs.py | 4 +-
escriptcore/test/python/test_modulefns.py | 4 +-
escriptcore/test/python/test_nonLinearPDE.py | 4 +-
escriptcore/test/python/test_objects.py | 4 +-
escriptcore/test/python/test_pdetools.py | 4 +-
escriptcore/test/python/test_shared.py | 4 +-
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escriptcore/test/python/test_util_NaN_funcs.py | 2 +-
escriptcore/test/python/test_util_base.py | 1988 +-
...tagged_data.py => test_util_binary_leftover.py} | 74326 ++++++++++---------
escriptcore/test/python/test_util_binary_new.py | 245 +
.../test/python/test_util_binary_no_tagged_data.py | 4 +-
.../python/test_util_binary_with_tagged_data.py | 4 +-
escriptcore/test/python/test_util_grad.py | 18964 +++++
escriptcore/test/python/test_util_integrals.py | 49150 ++++++++++++
escriptcore/test/python/test_util_interpolation.py | 50162 +++++++++++++
.../test_util_overloaded_binary_no_tagged_data.py | 4 +-
...test_util_overloaded_binary_with_tagged_data.py | 4 +-
escriptcore/test/python/test_util_reduction_new.py | 154 +
.../python/test_util_reduction_no_tagged_data.py | 760 -
.../python/test_util_reduction_with_tagged_data.py | 358 -
.../python/test_util_slicing_no_tagged_data.py | 4 +-
.../python/test_util_slicing_with_tagged_data.py | 4 +-
.../test/python/test_util_spatial_functions1.py | 42338 +----------
.../test/python/test_util_spatial_functions2.py | 38768 +---------
.../test/python/test_util_spatial_functions3.py | 10015 +--
escriptcore/test/python/test_util_unary_new.py | 519 +
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finley/src/Assemble_CopyElementData.cpp | 73 +-
finley/src/Assemble_CopyNodalData.cpp | 244 +-
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finley/src/Assemble_NodeCoordinates.cpp | 2 +-
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finley/src/Assemble_PDE_Points.cpp | 2 +-
finley/src/Assemble_PDE_Single_1D.cpp | 2 +-
finley/src/Assemble_PDE_Single_2D.cpp | 2 +-
finley/src/Assemble_PDE_Single_3D.cpp | 2 +-
finley/src/Assemble_PDE_Single_C.cpp | 2 +-
finley/src/Assemble_PDE_System_1D.cpp | 2 +-
finley/src/Assemble_PDE_System_2D.cpp | 2 +-
finley/src/Assemble_PDE_System_3D.cpp | 2 +-
finley/src/Assemble_PDE_System_C.cpp | 2 +-
finley/src/Assemble_addToSystemMatrix.cpp | 2 +-
finley/src/Assemble_getAssembleParameters.cpp | 2 +-
finley/src/Assemble_getNormal.cpp | 2 +-
finley/src/Assemble_getSize.cpp | 2 +-
finley/src/Assemble_gradient.cpp | 280 +-
finley/src/Assemble_integrate.cpp | 22 +-
finley/src/Assemble_interpolate.cpp | 24 +-
finley/src/Assemble_jacobians.cpp | 2 +-
finley/src/DomainFactory.cpp | 434 +-
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finley/src/ElementFile.h | 2 +-
finley/src/ElementFile_jacobians.cpp | 2 +-
finley/src/Finley.h | 2 +-
finley/src/FinleyDomain.cpp | 619 +-
finley/src/FinleyDomain.h | 11 +-
finley/src/FinleyException.h | 2 +-
finley/src/FinleyVersion.h | 4 +-
finley/src/IndexList.cpp | 2 +-
finley/src/IndexList.h | 2 +-
finley/src/Mesh_addPoints.cpp | 2 +-
finley/src/Mesh_findMatchingFaces.cpp | 2 +-
finley/src/Mesh_getPasoPattern.cpp | 2 +-
finley/src/Mesh_getTrilinosGraph.cpp | 2 +-
finley/src/Mesh_glueFaces.cpp | 2 +-
finley/src/Mesh_hex20.cpp | 2 +-
finley/src/Mesh_hex8.cpp | 2 +-
finley/src/Mesh_joinFaces.cpp | 2 +-
finley/src/Mesh_merge.cpp | 2 +-
finley/src/Mesh_optimizeDOFDistribution.cpp | 2 +-
finley/src/Mesh_read.cpp | 2 +-
finley/src/Mesh_readGmsh.cpp | 2 +-
finley/src/Mesh_rec4.cpp | 2 +-
finley/src/Mesh_rec8.cpp | 2 +-
finley/src/Mesh_write.cpp | 2 +-
finley/src/NodeFile.cpp | 2 +-
finley/src/NodeFile.h | 2 +-
finley/src/NodeMapping.h | 2 +-
finley/src/Quadrature.cpp | 2 +-
finley/src/Quadrature.h | 2 +-
finley/src/ReferenceElementSets.h | 2 +-
finley/src/ReferenceElements.cpp | 2 +-
finley/src/ReferenceElements.h | 2 +-
finley/src/SConscript | 2 +-
finley/src/ShapeFunctions.cpp | 2 +-
finley/src/ShapeFunctions.h | 2 +-
finley/src/Util.cpp | 20 +-
finley/src/Util.h | 7 +-
finley/src/finleycpp.cpp | 2 +-
finley/src/generateReferenceElementList.py | 2 +-
finley/test/FinleyDomainTestCase.cpp | 2 +-
finley/test/FinleyDomainTestCase.h | 2 +-
finley/test/SConscript | 2 +-
finley/test/finley_UnitTests.cpp | 2 +-
finley/test/python/FCT_benchmark.py | 4 +-
finley/test/python/FCT_test0.py | 4 +-
finley/test/python/FCT_test1.py | 4 +-
finley/test/python/FCT_test2.py | 4 +-
finley/test/python/OutTest.py | 4 +-
finley/test/python/PoissonSolverTest.py | 4 +-
finley/test/python/RT2D.py | 2 +-
finley/test/python/RecTest.py | 4 +-
finley/test/python/SConscript | 2 +-
finley/test/python/axisymm-splitB.py | 4 +-
finley/test/python/blocktest.py | 4 +-
finley/test/python/brick.py | 4 +-
finley/test/python/coalgas.py | 4 +-
finley/test/python/convection.py | 4 +-
finley/test/python/damage.py | 4 +-
finley/test/python/generate_dumps.py | 4 +-
finley/test/python/generate_meshes.py | 4 +-
finley/test/python/linearElastic.py | 4 +-
finley/test/python/localization.py | 4 +-
finley/test/python/lumping_advection_test.py | 4 +-
finley/test/python/lumping_wave_test.py | 4 +-
finley/test/python/rayleigh_taylor_instabilty.py | 4 +-
finley/test/python/rectangle.py | 4 +-
finley/test/python/run_amg.py | 4 +-
finley/test/python/run_darcy.py | 4 +-
finley/test/python/run_escriptOnFinley.py | 4 +-
finley/test/python/run_generators.py | 4 +-
finley/test/python/run_inputOutput.py | 4 +-
finley/test/python/run_linearPDEsOnFinley1_2D1.py | 4 +-
finley/test/python/run_linearPDEsOnFinley1_2D2.py | 4 +-
finley/test/python/run_linearPDEsOnFinley1_3D1.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part1.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part2.py | 4 +-
.../python/run_linearPDEsOnFinley1_3D2_part3-2.py | 48 -
.../python/run_linearPDEsOnFinley1_3D2_part3-3.py | 48 -
.../python/run_linearPDEsOnFinley1_3D2_part3-4.py | 48 -
...3-1.py => run_linearPDEsOnFinley1_3D2_part3.py} | 8 +-
finley/test/python/run_linearPDEsOnFinley2.py | 4 +-
finley/test/python/run_linearPDEsOnFinley3.py | 4 +-
finley/test/python/run_linearPDEsOnFinleyMacro.py | 4 +-
finley/test/python/run_models.py | 4 +-
finley/test/python/run_nonlinearPDEsOnFinley.py | 4 +-
finley/test/python/run_pasoSolversOnFinley.py | 4 +-
finley/test/python/run_splitworldOnFinley.py | 4 +-
finley/test/python/run_trilinosSolversOnFinley.py | 4 +-
finley/test/python/run_utilOnFinley.py | 4 +-
finley/test/python/runcoalgas.py | 4 +-
finley/test/python/seismic_wave.py | 4 +-
finley/test/python/slip_stress_mesh_old.py | 4 +-
finley/test/python/slip_stress_old.py | 4 +-
finley/test/python/stokes_problems.py | 4 +-
finley/test/python/subduction1.py | 4 +-
finley/test/python/subduction1_gen.py | 4 +-
finley/test/python/time_chunks.py | 4 +-
finley/test/python/tp.py | 4 +-
{debian => localdebian}/changelog | 55 +-
{debian => localdebian}/changelog.trivial | 0
localdebian/compat | 1 +
{debian => localdebian}/control | 9 +-
{debian => localdebian}/copyright | 97 +-
localdebian/patches/dateless-gz | 23 +
localdebian/patches/doxygenfix | 19 +
localdebian/patches/grammar-errors | 36 +
localdebian/patches/mpi-gaol | 33 +
localdebian/patches/release-sanity | 69 +
localdebian/patches/relocating-debian-dir | 24 +
localdebian/patches/series | 6 +
.../python-escript-doc.doc-base.1 | 0
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{debian => localdebian}/python-escript-doc.install | 0
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{debian => localdebian}/python3-escript-mpi.prerm | 0
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{debian => localdebian}/python3-escript.prerm | 0
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modellib/py_src/input.py | 4 +-
modellib/py_src/materials.py | 4 +-
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modellib/test/python/drucker_prager.py | 4 +-
modellib/test/python/run_convection.py | 4 +-
modellib/test/python/run_domainreaders.py | 4 +-
modellib/test/python/run_flow.py | 4 +-
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paso/src/BOOMERAMG.h | 2 +-
paso/src/BiCGStab.cpp | 2 +-
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paso/src/FCT_Solver.h | 8 +-
paso/src/FluxLimiter.cpp | 6 +-
paso/src/FluxLimiter.h | 6 +-
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paso/src/Functions.h | 2 +-
paso/src/GMRES.cpp | 2 +-
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paso/src/MINRES.cpp | 2 +-
paso/src/MKL.cpp | 2 +-
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paso/src/Options.cpp | 2 +-
paso/src/Options.h | 2 +-
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paso/src/SparseMatrix_MatrixMatrixTranspose.cpp | 2 +-
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paso/src/SparseMatrix_getSubmatrix.cpp | 2 +-
paso/src/SparseMatrix_nullifyRowsAndCols.cpp | 2 +-
paso/src/SparseMatrix_saveHB.cpp | 2 +-
paso/src/SystemMatrix.cpp | 30 +-
paso/src/SystemMatrix.h | 6 +-
paso/src/SystemMatrixPattern.cpp | 2 +-
paso/src/SystemMatrixPattern.h | 2 +-
paso/src/SystemMatrixPattern_unrollBlocks.cpp | 2 +-
paso/src/SystemMatrix_MatrixVector.cpp | 2 +-
paso/src/SystemMatrix_copyRemoteCoupleBlock.cpp | 6 +-
paso/src/SystemMatrix_debug.cpp | 6 +-
paso/src/SystemMatrix_extendedRows.cpp | 8 +-
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paso/src/SystemMatrix_mergeMainAndCouple.cpp | 10 +-
paso/src/TFQMR.cpp | 2 +-
paso/src/Transport.cpp | 35 +-
paso/src/Transport.h | 4 +-
paso/src/Transport_solve.cpp | 2 +-
paso/src/UMFPACK.cpp | 2 +-
paso/src/UMFPACK.h | 2 +-
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pycad/py_src/SConscript | 2 +-
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pycad/py_src/gmsh.py | 4 +-
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ripley/src/MultiRectangle.cpp | 198 +-
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ripley/src/WaveAssembler3D.h | 2 +-
ripley/src/blocktools.cpp | 2 +-
ripley/src/blocktools.h | 2 +-
ripley/src/blocktools2.cpp | 2 +-
ripley/src/domainhelpers.cpp | 2 +-
ripley/src/domainhelpers.h | 2 +-
ripley/src/generate_assamblage.py | 2 +-
ripley/src/generate_assemblage_cpp.py | 2 +-
ripley/src/ripleycpp.cpp | 2 +-
ripley/src/system_dep.h | 2 +-
ripley/test/SConscript | 2 +-
ripley/test/SystemMatrixTestCase.cpp | 2 +-
ripley/test/SystemMatrixTestCase.h | 2 +-
ripley/test/python/SConscript | 2 +-
.../test/python/run_customAssemblersOnMultiRes.py | 4 +-
ripley/test/python/run_customAssemblersOnRipley.py | 4 +-
ripley/test/python/run_diracOnMultiRes.py | 4 +-
ripley/test/python/run_diracOnRipley.py | 4 +-
ripley/test/python/run_escriptOnMultiResolution.py | 4 +-
ripley/test/python/run_escriptOnRipley.py | 4 +-
ripley/test/python/run_linearPDEsOnMultiRes.py | 4 +-
ripley/test/python/run_linearPDEsOnRipley.py | 4 +-
ripley/test/python/run_nonlinearPDEOnMultiRes.py | 4 +-
ripley/test/python/run_nonlinearPDEOnRipley.py | 4 +-
ripley/test/python/run_pasoSolversOnMultiRes.py | 4 +-
ripley/test/python/run_pasoSolversOnRipley.py | 4 +-
ripley/test/python/run_readWriteOnMultiRes.py | 4 +-
ripley/test/python/run_readWriteOnRipley.py | 4 +-
ripley/test/python/run_splitworldOnRipley.py | 4 +-
.../test/python/run_trilinosSolversOnMultiRes.py | 4 +-
ripley/test/python/run_trilinosSolversOnRipley.py | 4 +-
ripley/test/python/run_utilOnMultiRes.py | 4 +-
ripley/test/python/run_utilOnRipley.py | 4 +-
ripley/test/ripley_UnitTest.cpp | 2 +-
run-escript.in | 6 +-
.../vivid_mpi_options.py => badger_options.py} | 21 +-
...jessie_mpi_options.py => badger_py3_options.py} | 8 +-
.../windows_options.py => cgisrv3_options.py} | 70 +-
...indows_intelc_options.py => cgisrv6_options.py} | 79 +-
.../sid_py3_options.py => copper_options.py} | 22 +-
.../datamanager.py => scons/ferret_options.py | 18 +-
...freebsd10_0_options.py => guineapig_options.py} | 25 +-
.../pdetools.py => scons/guineapig_py2_options.py | 9 +-
...windows_intelc_options.py => magnus_options.py} | 147 +-
scons/mara_options.py | 45 +
.../sid_py3_options.py => mole_options.py} | 14 +-
.../jessie_mpi_options.py => newton_options.py} | 7 +-
...windows_intelc_options.py => raijin_options.py} | 118 +-
.../sid_py3_options.py => sage_options.py} | 16 +-
.../jessie_mpi_options.py => sage_py3_options.py} | 8 +-
.../savanna_ice_noomp_options.py | 9 +-
.../sid_mpi_options.py => savanna_ice_options.py} | 11 +-
.../pdetools.py => scons/savanna_noomp_options.py | 9 +-
scons/savanna_options.py | 86 +
.../jessie_mpi_options.py => squirrel_options.py} | 13 +-
...ows_intelc_options.py => standalone_options.py} | 124 +-
scons/templates/README_FIRST | 23 +-
scons/templates/__init__.py | 2 +-
scons/templates/centos7_0_options.py | 6 +-
.../{fedora21_5_options.py => fedora_options.py} | 2 +-
scons/templates/freebsd10_0_options.py | 2 +-
scons/templates/homebrew_10.10_options.py | 2 +-
scons/templates/homebrew_11_options.py | 4 +-
scons/templates/homebrew_options.py | 2 +-
scons/templates/jessie_mpi_options.py | 2 +-
scons/templates/jessie_options.py | 2 +-
scons/templates/jessie_py3_mpi_options.py | 2 +-
scons/templates/jessie_py3_options.py | 2 +-
scons/templates/macports_10.10_options.py | 2 +-
scons/templates/macports_options.py | 4 +-
...opensuse13_2_options.py => opensuse_options.py} | 8 +-
scons/templates/sid_options.py | 6 +-
scons/templates/sid_py3_mpi_options.py | 2 +-
scons/templates/sid_py3_options.py | 2 +-
scons/templates/trusty_options.py | 2 +-
scons/templates/utopic_options.py | 2 +-
scons/templates/wheezy_mpi_options.py | 2 +-
scons/templates/wheezy_options.py | 2 +-
scons/templates/wheezy_py3_mpi_options.py | 2 +-
scons/templates/wheezy_py3_options.py | 2 +-
scons/templates/windows_intelc_options.py | 2 +-
scons/templates/windows_msvc90_options.py | 2 +-
scons/templates/windows_options.py | 2 +-
...{vivid_mpi_options.py => xenial_mpi_options.py} | 2 +-
.../{vivid_options.py => xenial_options.py} | 0
...y3_mpi_options.py => xenial_py3_mpi_options.py} | 2 +-
...{vivid_py3_options.py => xenial_py3_options.py} | 2 +-
...vivid_mpi_options.py => yakkety_mpi_options.py} | 2 +-
.../{vivid_options.py => yakkety_options.py} | 0
...3_mpi_options.py => yakkety_py3_mpi_options.py} | 2 +-
...vivid_py3_options.py => yakkety_py3_options.py} | 2 +-
.../{vivid_mpi_options.py => zesty_mpi_options.py} | 2 +-
.../{vivid_options.py => zesty_options.py} | 0
...py3_mpi_options.py => zesty_py3_mpi_options.py} | 2 +-
.../{vivid_py3_options.py => zesty_py3_options.py} | 2 +-
scons/tinaroo_options.py | 60 +
.../windows_intelc_options.py => vayu_options.py} | 116 +-
.../windows_intelc_options.py => vmw_options.py} | 65 +-
scripts/makesrc.sh | 2 +-
scripts/py_comp.py | 2 +-
site_scons/dependencies.py | 117 +-
site_scons/extractdebbuild.py | 4 +-
site_scons/grouptest.py | 4 +-
site_scons/site_init.py | 14 +-
site_scons/site_tools/nvcc.py | 2 +-
speckley/SConscript | 2 +-
speckley/py_src/SConscript | 2 +-
speckley/py_src/__init__.py | 4 +-
speckley/src/AbstractAssembler.cpp | 2 +-
speckley/src/AbstractAssembler.h | 2 +-
speckley/src/Brick.cpp | 321 +-
speckley/src/Brick.h | 63 +-
speckley/src/BrickGradients.cpp | 349 +-
speckley/src/BrickIntegrals.cpp | 132 +-
speckley/src/BrickReductions.cpp | 115 +-
speckley/src/CrossDomainCoupler.cpp | 2 +-
speckley/src/CrossDomainCoupler.h | 2 +-
speckley/src/DefaultAssembler2D.cpp | 2 +-
speckley/src/DefaultAssembler2D.h | 2 +-
speckley/src/DefaultAssembler3D.cpp | 2 +-
speckley/src/DefaultAssembler3D.h | 2 +-
speckley/src/Rectangle.cpp | 430 +-
speckley/src/Rectangle.h | 74 +-
speckley/src/RectangleGradients.cpp | 332 +-
speckley/src/RectangleIntegrals.cpp | 133 +-
speckley/src/RectangleReductions.cpp | 116 +-
speckley/src/SConscript | 2 +-
speckley/src/Speckley.h | 3 +-
speckley/src/SpeckleyDomain.cpp | 65 +-
speckley/src/SpeckleyDomain.h | 17 +-
speckley/src/SpeckleyException.h | 2 +-
speckley/src/WaveAssembler2D.cpp | 2 +-
speckley/src/WaveAssembler2D.h | 2 +-
speckley/src/WaveAssembler3D.cpp | 2 +-
speckley/src/WaveAssembler3D.h | 2 +-
speckley/src/domainhelpers.cpp | 2 +-
speckley/src/domainhelpers.h | 2 +-
speckley/src/lagrange_functions.h | 2 +-
speckley/src/speckleycpp.cpp | 2 +-
speckley/src/system_dep.h | 2 +-
speckley/test/SConscript | 2 +-
speckley/test/python/SConscript | 2 +-
speckley/test/python/run_SpeckleyRipleyCoupler.py | 4 +-
.../test/python/run_customAssemblersOnSpeckley.py | 4 +-
speckley/test/python/run_diracOnSpeckley.py | 4 +-
speckley/test/python/run_readWriteOnSpeckley.py | 4 +-
speckley/test/python/run_specialOnSpeckley.py | 4 +-
svn_version | 2 +-
tools/escriptconvert/SConscript | 2 +-
tools/escriptconvert/escriptconvert.cpp | 2 +-
tools/escriptconvert/esdcreate.cpp | 2 +-
tools/netcdf.cc | 715 +
tools/overlord/SConscript | 2 +-
tools/overlord/overlord.cpp | 2 +-
tools/testrunner.py | 2 +-
tools/trconfcmp.cc | 167 +
trilinoswrap/SConscript | 2 +-
trilinoswrap/src/Amesos2Wrapper.cpp | 4 +
trilinoswrap/src/CrsMatrixWrapper.cpp | 2 +-
trilinoswrap/src/SConscript | 2 +-
trilinoswrap/src/TrilinosAdapterException.h | 2 +-
weipa/SConscript | 2 +-
weipa/py_src/SConscript | 2 +-
weipa/py_src/__init__.py | 4 +-
weipa/src/DataVar.cpp | 120 +-
weipa/src/DataVar.h | 4 +-
weipa/src/DomainChunk.h | 2 +-
weipa/src/ElementData.h | 2 +-
weipa/src/EscriptDataset.cpp | 2 +-
weipa/src/EscriptDataset.h | 2 +-
weipa/src/FinleyDomain.cpp | 51 +-
weipa/src/FinleyDomain.h | 2 +-
weipa/src/FinleyElements.cpp | 124 +-
weipa/src/FinleyElements.h | 14 +-
weipa/src/FinleyNodes.cpp | 97 +-
weipa/src/FinleyNodes.h | 15 +-
weipa/src/NodeData.h | 2 +-
weipa/src/RipleyDomain.cpp | 2 +-
weipa/src/RipleyDomain.h | 2 +-
weipa/src/RipleyElements.cpp | 2 +-
weipa/src/RipleyElements.h | 2 +-
weipa/src/RipleyNodes.cpp | 2 +-
weipa/src/RipleyNodes.h | 2 +-
weipa/src/SConscript | 2 +-
weipa/src/SpeckleyDomain.cpp | 2 +-
weipa/src/SpeckleyDomain.h | 2 +-
weipa/src/SpeckleyElements.cpp | 2 +-
weipa/src/SpeckleyElements.h | 2 +-
weipa/src/SpeckleyNodes.cpp | 2 +-
weipa/src/SpeckleyNodes.h | 2 +-
weipa/src/VisItControl.cpp | 2 +-
weipa/src/VisItControl.h | 2 +-
weipa/src/VisItData.cpp | 2 +-
weipa/src/VisItData.h | 2 +-
weipa/src/weipa.h | 2 +-
weipa/src/weipacpp.cpp | 2 +-
weipa/test/EscriptDatasetTestCase.cpp | 2 +-
weipa/test/EscriptDatasetTestCase.h | 2 +-
weipa/test/SConscript | 2 +-
weipa/test/python/SConscript | 2 +-
weipa/test/python/run_savesilo_tests.py | 4 +-
weipa/test/python/run_savevtk_tests.py | 4 +-
weipa/test/weipa_UnitTest.cpp | 2 +-
1099 files changed, 174147 insertions(+), 201533 deletions(-)
create mode 100644 debian/patches/fixmathjax
create mode 100644 debian/patches/fixsphinxversion
create mode 100644 debian/patches/manspelling
delete mode 100644 debian/patches/nodatedoxygen
copy doc/examples/inversion/{mag_netcdf.py => magi_netcdf.py} (93%)
create mode 100644 doc/install/trilinos.tex
create mode 100644 doc/inversion/ForwardMagneticIntensity.tex
create mode 100644 escriptcore/src/NCHelper.cpp
copy dudley/src/DudleyVersion.h => escriptcore/src/NCHelper.h (67%)
delete mode 100644 escriptcore/test/python/test_assemblage_2Do1.py
delete mode 100644 escriptcore/test/python/test_assemblage_2Do2.py
delete mode 100644 escriptcore/test/python/test_assemblage_3Do1.py
copy escriptcore/test/python/{test_util_binary_no_tagged_data.py => test_util_binary_leftover.py} (61%)
create mode 100644 escriptcore/test/python/test_util_binary_new.py
create mode 100644 escriptcore/test/python/test_util_grad.py
create mode 100644 escriptcore/test/python/test_util_integrals.py
create mode 100644 escriptcore/test/python/test_util_interpolation.py
create mode 100644 escriptcore/test/python/test_util_reduction_new.py
delete mode 100644 escriptcore/test/python/test_util_reduction_no_tagged_data.py
delete mode 100644 escriptcore/test/python/test_util_reduction_with_tagged_data.py
create mode 100644 escriptcore/test/python/test_util_unary_new.py
delete mode 100644 finley/test/python/run_linearPDEsOnFinley1_3D2_part3-2.py
delete mode 100644 finley/test/python/run_linearPDEsOnFinley1_3D2_part3-3.py
delete mode 100644 finley/test/python/run_linearPDEsOnFinley1_3D2_part3-4.py
rename finley/test/python/{run_linearPDEsOnFinley1_3D2_part3-1.py => run_linearPDEsOnFinley1_3D2_part3.py} (80%)
copy {debian => localdebian}/changelog (60%)
copy {debian => localdebian}/changelog.trivial (100%)
create mode 100644 localdebian/compat
copy {debian => localdebian}/control (96%)
copy {debian => localdebian}/copyright (70%)
create mode 100644 localdebian/patches/dateless-gz
create mode 100644 localdebian/patches/doxygenfix
create mode 100644 localdebian/patches/grammar-errors
create mode 100644 localdebian/patches/mpi-gaol
create mode 100644 localdebian/patches/release-sanity
create mode 100644 localdebian/patches/relocating-debian-dir
create mode 100644 localdebian/patches/series
copy {debian => localdebian}/python-escript-doc.doc-base.1 (100%)
copy {debian => localdebian}/python-escript-doc.doc-base.2 (100%)
copy {debian => localdebian}/python-escript-doc.doc-base.3 (100%)
copy {debian => localdebian}/python-escript-doc.doc-base.4 (100%)
copy {debian => localdebian}/python-escript-doc.doc-base.5 (100%)
copy {debian => localdebian}/python-escript-doc.doc-base.6 (100%)
copy {debian => localdebian}/python-escript-doc.examples (100%)
copy {debian => localdebian}/python-escript-doc.install (100%)
copy {debian => localdebian}/python-escript-doc.links (100%)
copy {debian => localdebian}/python-escript-doc.lintian-overrides (100%)
copy {debian => localdebian}/python-escript-mpi.install (100%)
copy {debian => localdebian}/python-escript-mpi.lintian-overrides (100%)
copy {debian => localdebian}/python-escript-mpi.manpages (100%)
copy {debian => localdebian}/python-escript-mpi.postinst (100%)
copy {debian => localdebian}/python-escript-mpi.prerm (100%)
copy {debian => localdebian}/python-escript.install (100%)
copy {debian => localdebian}/python-escript.lintian-overrides (100%)
copy {debian => localdebian}/python-escript.manpages (100%)
copy {debian => localdebian}/python-escript.postinst (100%)
copy {debian => localdebian}/python-escript.prerm (100%)
copy {debian => localdebian}/python3-escript-mpi.install (100%)
copy {debian => localdebian}/python3-escript-mpi.lintian-overrides (100%)
copy {debian => localdebian}/python3-escript-mpi.manpages (100%)
copy {debian => localdebian}/python3-escript-mpi.postinst (100%)
copy {debian => localdebian}/python3-escript-mpi.prerm (100%)
copy {debian => localdebian}/python3-escript.install (100%)
copy {debian => localdebian}/python3-escript.lintian-overrides (100%)
copy {debian => localdebian}/python3-escript.manpages (100%)
copy {debian => localdebian}/python3-escript.postinst (100%)
copy {debian => localdebian}/python3-escript.prerm (100%)
copy {debian => localdebian}/rules (99%)
copy {debian => localdebian}/source/format (100%)
copy {debian => localdebian}/utils/cppy.py (95%)
copy {debian => localdebian}/utils/tweak.sh (100%)
copy {debian => localdebian}/watch (100%)
copy scons/{templates/vivid_mpi_options.py => badger_options.py} (57%)
copy scons/{templates/jessie_mpi_options.py => badger_py3_options.py} (78%)
copy scons/{templates/windows_options.py => cgisrv3_options.py} (81%)
copy scons/{templates/windows_intelc_options.py => cgisrv6_options.py} (73%)
copy scons/{templates/sid_py3_options.py => copper_options.py} (63%)
copy escript/py_src/datamanager.py => scons/ferret_options.py (58%)
copy scons/{templates/freebsd10_0_options.py => guineapig_options.py} (50%)
copy escript/py_src/pdetools.py => scons/guineapig_py2_options.py (75%)
copy scons/{templates/windows_intelc_options.py => magnus_options.py} (65%)
create mode 100644 scons/mara_options.py
copy scons/{templates/sid_py3_options.py => mole_options.py} (68%)
copy scons/{templates/jessie_mpi_options.py => newton_options.py} (80%)
copy scons/{templates/windows_intelc_options.py => raijin_options.py} (61%)
copy scons/{templates/sid_py3_options.py => sage_options.py} (63%)
copy scons/{templates/jessie_mpi_options.py => sage_py3_options.py} (78%)
copy escript/py_src/pdetools.py => scons/savanna_ice_noomp_options.py (62%)
copy scons/{templates/sid_mpi_options.py => savanna_ice_options.py} (68%)
copy escript/py_src/pdetools.py => scons/savanna_noomp_options.py (62%)
create mode 100644 scons/savanna_options.py
copy scons/{templates/jessie_mpi_options.py => squirrel_options.py} (62%)
copy scons/{templates/windows_intelc_options.py => standalone_options.py} (59%)
rename scons/templates/{fedora21_5_options.py => fedora_options.py} (92%)
rename scons/templates/{opensuse13_2_options.py => opensuse_options.py} (77%)
copy scons/templates/{vivid_mpi_options.py => xenial_mpi_options.py} (95%)
copy scons/templates/{vivid_options.py => xenial_options.py} (100%)
copy scons/templates/{vivid_py3_mpi_options.py => xenial_py3_mpi_options.py} (95%)
copy scons/templates/{vivid_py3_options.py => xenial_py3_options.py} (96%)
copy scons/templates/{vivid_mpi_options.py => yakkety_mpi_options.py} (95%)
copy scons/templates/{vivid_options.py => yakkety_options.py} (100%)
copy scons/templates/{vivid_py3_mpi_options.py => yakkety_py3_mpi_options.py} (95%)
copy scons/templates/{vivid_py3_options.py => yakkety_py3_options.py} (96%)
copy scons/templates/{vivid_mpi_options.py => zesty_mpi_options.py} (96%)
copy scons/templates/{vivid_options.py => zesty_options.py} (100%)
copy scons/templates/{vivid_py3_mpi_options.py => zesty_py3_mpi_options.py} (95%)
copy scons/templates/{vivid_py3_options.py => zesty_py3_options.py} (96%)
create mode 100644 scons/tinaroo_options.py
copy scons/{templates/windows_intelc_options.py => vayu_options.py} (61%)
copy scons/{templates/windows_intelc_options.py => vmw_options.py} (77%)
create mode 100644 tools/netcdf.cc
create mode 100644 tools/trconfcmp.cc
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