[r-cran-mcmcpack] 01/04: Updated version 1.4-0 from 'upstream/1.4-0'
Andreas Tille
tille at debian.org
Fri Sep 8 08:21:05 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository r-cran-mcmcpack.
commit 1b5b796341a8d63103327c46b72d59b17d2a8be0
Merge: 55cd6d6 ffe59cf
Author: Andreas Tille <tille at debian.org>
Date: Fri Sep 8 09:59:57 2017 +0200
Updated version 1.4-0 from 'upstream/1.4-0'
with Debian dir bcd3d6266c8ba6e918699c1681d29f07603ca5f2
DESCRIPTION | 15 +-
MD5 | 304 ++++----
NAMESPACE | 184 +++--
R/BayesFactors.R | 192 ++++-
R/HDPHMMnegbin.R | 437 +++++++++++
R/HDPHMMpoisson.R | 325 ++++++++
R/HDPHSMMnegbin.R | 433 +++++++++++
R/HMMpanelFE.R | 248 +++++-
R/HMMpanelRE.R | 298 ++++++-
R/MCMCSVDreg.R | 175 ++++-
R/MCMCbinaryChange.R | 350 ++++++---
R/MCMCdynamicEI.R | 233 +++++-
R/MCMCdynamicIRT1d-b.R | 119 +--
R/MCMCdynamicIRT1d.R | 375 +++++++--
R/MCMCfactanal.R | 213 ++++-
R/MCMChierEI.R | 200 ++++-
R/MCMChlogit.R | 286 ++++++-
R/MCMChpoisson.R | 274 ++++++-
R/MCMChregress.R | 251 +++++-
R/MCMCirt1d.R | 245 +++++-
R/MCMCirtHier1d.R | 324 +++++++-
R/MCMCirtKd.R | 212 ++++-
R/MCMCirtKdHet.R | 242 ------
R/MCMCirtKdRob.R | 421 ++++++++--
R/MCMClogit.R | 273 +++++--
R/MCMCmetrop1R.R | 250 +++++-
R/MCMCmixfactanal.R | 323 +++++++-
R/MCMCmnl.R | 352 +++++++--
R/MCMCnegbin.R | 356 +++++++++
R/MCMCnegbinChange.R | 412 ++++++++++
R/MCMCoprobit.R | 228 +++++-
R/MCMCoprobitChange.R | 261 +++++--
R/MCMCordfactanal.R | 265 ++++++-
R/MCMCpack-package.R | 13 +
R/MCMCpoisson.R | 166 +++-
R/MCMCpoissonChange.R | 562 +++++++++-----
R/MCMCprobit.R | 199 ++++-
R/MCMCprobitChange.R | 226 +++++-
R/MCMCquantreg.R | 174 ++++-
R/MCMCregress.R | 187 ++++-
R/MCMCregressChange.R | 313 ++++++--
R/MCMCresidualBreakAnalysis.R | 245 +++++-
R/MCMCtobit.R | 174 ++++-
R/MCmodels.R | 252 +++++-
R/SSVSquantreg.R | 182 ++++-
R/SSVSquantregsummary.R | 292 +++++--
R/btsutil.R | 257 +++++--
R/data.R | 170 ++++
R/distn.R | 368 +++++++--
R/hdp-utils.R | 58 ++
R/make.breaklist.R | 26 +
R/procrust.R | 50 +-
R/scythe.R | 67 +-
R/testpanelGroupBreak.R | 232 +++++-
R/testpanelSubjectBreak.R | 206 ++++-
R/tomog.R | 201 ++++-
R/utility.R | 60 +-
man/BayesFactor.Rd | 62 +-
man/Dirichlet.Rd | 49 ++
man/HDPHMMnegbin.Rd | 219 ++++++
man/HDPHMMpoisson.Rd | 187 +++++
man/HDPHSMMnegbin.Rd | 233 ++++++
man/HMMpanelFE.Rd | 218 +++---
man/HMMpanelRE.Rd | 338 ++++----
man/InvGamma.Rd | 53 ++
man/InvWishart.Rd | 40 +
man/MCMCSVDreg.Rd | 268 +++----
man/MCMCbinaryChange.Rd | 286 +++----
man/MCMCdynamicEI.Rd | 283 ++++---
man/MCMCdynamicIRT1d.Rd | 461 +++++------
man/MCMCfactanal.Rd | 322 ++++----
man/MCMChierEI.Rd | 263 +++----
man/MCMChlogit.Rd | 371 +++++----
man/MCMChpoisson.Rd | 363 +++++----
man/MCMChregress.Rd | 322 ++++----
man/MCMCirt1d.Rd | 376 +++++----
man/MCMCirtHier1d.Rd | 493 ++++++------
man/MCMCirtKd.Rd | 394 +++++-----
man/MCMCirtKdHet.Rd | 191 -----
man/MCMCirtKdRob.Rd | 590 +++++++-------
man/MCMClogit.Rd | 280 ++++---
man/MCMCmetrop1R.Rd | 268 ++++---
man/MCMCmixfactanal.Rd | 448 +++++------
man/MCMCmnl.Rd | 325 ++++----
man/MCMCnegbin.Rd | 166 ++++
man/MCMCnegbinChange.Rd | 219 ++++++
man/MCMCoprobit.Rd | 280 ++++---
man/MCMCoprobitChange.Rd | 383 +++++----
man/MCMCordfactanal.Rd | 374 +++++----
man/MCMCpoisson.Rd | 227 +++---
man/MCMCpoissonChange.Rd | 303 ++++----
man/MCMCprobit.Rd | 236 +++---
man/MCMCprobitChange.Rd | 359 +++++----
man/MCMCquantreg.Rd | 243 +++---
man/MCMCregress.Rd | 283 ++++---
man/MCMCregressChange.Rd | 435 +++++------
man/MCMCresidualBreakAnalysis.Rd | 270 ++++---
man/MCMCtobit.Rd | 286 +++----
man/MCbinomialbeta.Rd | 64 +-
man/MCmultinomdirichlet.Rd | 67 +-
man/MCnormalnormal.Rd | 67 +-
man/MCpoissongamma.Rd | 62 +-
man/Nethvote.Rd | 90 ++-
man/NoncenHypergeom.Rd | 58 ++
man/PErisk.Rd | 75 +-
man/PostProbMod.Rd | 48 +-
man/QRSSVSplot.Rd | 50 --
man/QRSSVSsummary.Rd | 42 -
man/Rehnquist.Rd | 45 +-
man/SSVSquantreg.Rd | 220 +++---
man/Senate.Rd | 38 +-
man/SupremeCourt.Rd | 42 +-
man/Wishart.Rd | 39 +
man/choicevar.Rd | 29 +-
man/dirichlet.Rd | 43 --
man/dtomog.Rd | 124 ---
man/dtomogplot.Rd | 116 +++
man/invgamma.Rd | 46 --
man/iwishart.Rd | 39 -
man/make.breaklist.Rd | 42 +-
man/mptable.Rd | 42 +-
man/noncenhypergeom.Rd | 57 --
man/plot.qrssvs.Rd | 54 ++
man/plotChangepoint.Rd | 35 +-
man/plotHDPChangepoint.Rd | 30 +
man/plotState.Rd | 34 +-
man/procrust.Rd | 51 --
man/procrustes.Rd | 45 ++
man/read.Scythe.Rd | 34 +
man/readscythe.Rd | 36 -
man/summaryqrssvs.Rd | 54 ++
man/testpanelGroupBreak.Rd | 197 ++---
man/testpanelSubjectBreak.Rd | 200 ++---
man/tomog.Rd | 82 --
man/tomogplot.Rd | 77 ++
man/topmodels.Rd | 50 +-
man/vech.Rd | 42 +-
man/wishart.Rd | 39 -
man/write.Scythe.Rd | 40 +
man/writescythe.Rd | 42 -
man/xpnd.Rd | 52 +-
src/HMMmultivariateGaussian.cc | 106 +--
src/MCMCnbutil.cc | 342 +++++++++
src/MCMCnbutil.h | 323 ++++++++
src/MCMCpack_init.c | 108 +++
src/cHDPHMMnegbin.cc | 671 ++++++++++++++++
src/cHDPHMMpoisson.cc | 589 ++++++++++++++
src/cHDPHSMMnegbin.cc | 780 +++++++++++++++++++
src/{HMMpanelFE.cc => cHMMpanelFE.cc} | 258 +++----
src/{HMMpanelRE.cc => cHMMpanelRE.cc} | 792 +++++++++----------
src/{MCMCSVDreg.cc => cMCMCSVDreg.cc} | 132 ++--
src/{MCMCbinaryChange.cc => cMCMCbinaryChange.cc} | 294 +++----
...CMCdynamicIRT1d-b.cc => cMCMCdynamicIRT1d-b.cc} | 142 ++--
src/{MCMCdynamicIRT1d.cc => cMCMCdynamicIRT1d.cc} | 136 ++--
src/{MCMCfactanal.cc => cMCMCfactanal.cc} | 126 +--
src/{MCMChlogit.cc => cMCMChlogit.cc} | 72 +-
src/{MCMChpoisson.cc => cMCMChpoisson.cc} | 72 +-
src/{MCMChregress.cc => cMCMChregress.cc} | 58 +-
src/{MCMCirt1d.cc => cMCMCirt1d.cc} | 52 +-
src/{MCMCirtHier1d.cc => cMCMCirtHier1d.cc} | 116 +--
src/{MCMClogit.cc => cMCMClogit.cc} | 70 +-
src/cMCMCnegbin.cc | 465 +++++++++++
src/cMCMCnegbinChange.cc | 855 +++++++++++++++++++++
src/{MCMCoprobit.cc => cMCMCoprobit.cc} | 190 ++---
...{MCMCoprobitChange.cc => cMCMCoprobitChange.cc} | 482 ++++++------
src/{MCMCpoisson.cc => cMCMCpoisson.cc} | 90 +--
...{MCMCpoissonChange.cc => cMCMCpoissonChange.cc} | 802 +++++++++----------
src/{MCMCprobit.cc => cMCMCprobit.cc} | 98 +--
src/{MCMCprobitChange.cc => cMCMCprobitChange.cc} | 314 ++++----
src/{MCMCprobitres.cc => cMCMCprobitres.cc} | 0
src/{MCMCquantreg.cc => cMCMCquantreg.cc} | 42 +-
src/{MCMCregress.cc => cMCMCregress.cc} | 56 +-
...{MCMCregressChange.cc => cMCMCregressChange.cc} | 462 ++++++-----
...akAnalysis.cc => cMCMCresidualBreakAnalysis.cc} | 477 ++++++------
src/{MCMCtobit.cc => cMCMCtobit.cc} | 70 +-
src/{SSVSquantreg.cc => cSSVSquantreg.cc} | 66 +-
src/rng.h | 2 +-
177 files changed, 26288 insertions(+), 11684 deletions(-)
--
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