[r-cran-desolve] branch master updated (164751e -> 40080fe)
Andreas Tille
tille at debian.org
Fri Sep 8 15:05:47 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository r-cran-desolve.
from 164751e d/watch: version=4
adds 584c47b New upstream version 1.20
new 3e7d947 Updated version 1.20 from 'upstream/1.20'
new a4d03d5 New upstream version
new 71f2ec2 debian/rules: unset executable flag from R scripts
new 87f9d1b debhelper 10
new 3d40e27 drop unused lintian-overrides
new d5cfe83 Standards-Version: 4.1.0 (no changes needed)
new 4a73446 Add README.source to document binary data
new fa95728 More removals of executable flags
new 40080fe Upload to unstable
The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.Rinstignore | 0
DESCRIPTION | 26 +-
MD5 | 87 +-
NAMESPACE | 0
NEWS | 11 +-
R/Aquaphy.R | 0
R/DLLfunc.R | 0
R/SCOC.R | 0
R/Utilities.R | 0
R/ccl4model.R | 0
R/checkevents.R | 377 +++---
R/cleanEventTimes.R | 0
R/daspk.R | 0
R/dede.R | 0
R/diagnostics.R | 0
R/euler.R | 0
R/forcings.R | 0
R/functions.R | 0
R/iteration.R | 0
R/lsoda.R | 0
R/lsodar.R | 0
R/lsode.R | 0
R/lsodes.R | 0
R/matplot.R | 0
R/ode.R | 0
R/printmessage.R | 0
R/radau.R | 0
R/rk.R | 0
R/rk4.R | 0
R/rkMethod.R | 0
R/vode.R | 0
R/zvode.R | 0
build/vignette.rds | Bin 332 -> 331 bytes
data/ccl4data.rda | Bin 5204 -> 5205 bytes
debian/README.source | 13 +
debian/changelog | 12 +
debian/compat | 2 +-
debian/control | 4 +-
debian/r-cran-desolve.lintian-overrides | 5 -
debian/rules | 10 +
demo/00Index | 0
demo/CCL4model.R | 0
demo/odedim.R | 0
inst/CITATION | 0
inst/doc/compiledCode.R | 708 +++++------
inst/doc/compiledCode.Rnw | 0
inst/doc/compiledCode.pdf | Bin 439194 -> 272015 bytes
inst/doc/deSolve.R | 2074 +++++++++++++++----------------
inst/doc/deSolve.Rnw | 0
inst/doc/deSolve.pdf | Bin 838925 -> 711308 bytes
inst/doc/dynload-dede/dedeUtils.c | 0
inst/doc/dynload-dede/dede_lv.R | 0
inst/doc/dynload-dede/dede_lv.c | 0
inst/doc/dynload-dede/dede_lv2.R | 0
inst/doc/dynload-dede/dede_lv2.c | 0
inst/doc/dynload-dede/dede_lv2F.f | 0
inst/doc/dynload-dede/dede_lvF.f | 0
inst/doc/dynload-dede/dedesimple.R | 0
inst/doc/dynload-dede/dedesimple.c | 0
inst/doc/dynload-dede/dedesimpleF.f | 0
inst/doc/dynload/Aquaphy.f | 0
inst/doc/dynload/AquaphyEvent.R | 0
inst/doc/dynload/AquaphyForcing.R | 0
inst/doc/dynload/AquaphyForcing.f | 0
inst/doc/dynload/CCL4model.f | 0
inst/doc/dynload/ChemicalDAE.f | 0
inst/doc/dynload/Forcing_lv.R | 0
inst/doc/dynload/Forcing_lv.c | 0
inst/doc/dynload/SCOC.f | 0
inst/doc/dynload/daspkdll.R | 0
inst/doc/dynload/daspkfor.f | 0
inst/doc/dynload/ex_Aquaphy.c | 0
inst/doc/dynload/ex_Aquaphy.f | 0
inst/doc/dynload/ex_CCL4model.c | 0
inst/doc/dynload/ex_CCL4model.f | 0
inst/doc/dynload/ex_SCOC.c | 0
inst/doc/dynload/ex_SCOC.f | 0
inst/doc/dynload/intakes.RData | Bin
inst/doc/dynload/lsodardll.R | 0
inst/doc/dynload/lsodarfor.f | 0
inst/doc/dynload/odeband.R | 0
inst/doc/dynload/odeband.f | 0
inst/doc/dynload/odec.c | 0
inst/doc/dynload/odedll.R | 0
inst/doc/dynload/odefor.f | 0
inst/doc/dynload/odefor2.f | 0
inst/doc/dynload/radaudae.f | 0
inst/doc/dynload/radaudaedll.R | 0
inst/doc/dynload/satres.R | 0
inst/doc/dynload/satres.f | 0
inst/doc/dynload/satresC.c | 0
inst/doc/dynload/zvodedll.R | 0
inst/doc/dynload/zvodedll.f | 0
inst/doc/examples/Arenstorf.R | 0
inst/doc/examples/Daphnia_event.R | 0
inst/doc/examples/Nand.R | 0
inst/doc/examples/Pollution.R | 0
inst/doc/examples/Schelde_DSA.R | 0
inst/doc/examples/Schelde_FKA.R | 0
inst/doc/examples/Schelde_FNA.R | 0
inst/doc/examples/Schelde_OSA.R | 0
inst/doc/examples/Schelde_pars.R | 0
inst/doc/examples/ballode.R | 0
inst/doc/examples/examples_paper.R | 0
inst/doc/mymod.c | 0
inst/doc/mymod.f | 0
inst/doc/source/ddaspkcomments.txt.gz | Bin
inst/doc/source/opkdmain.f.gz | Bin
inst/doc/source/opkdmaincomments.txt.gz | Bin
inst/doc/source/vodecomments.txt.gz | Bin
man/DLLfunc.Rd | 0
man/DLLres.Rd | 0
man/SCOC.Rd | 0
man/aquaphy.Rd | 0
man/ccl4data.Rd | 0
man/ccl4model.Rd | 0
man/cleanEventTimes.Rd | 0
man/daspk.Rd | 2 +-
man/deSolve-internal.Rd | 0
man/deSolve.Rd | 34 +-
man/dede.Rd | 66 +-
man/diagnostics.Rd | 0
man/diagnostics.deSolve.Rd | 0
man/events.Rd | 62 +-
man/forcings.Rd | 0
man/lsoda.Rd | 2 +-
man/lsodar.Rd | 2 +-
man/lsode.Rd | 2 +-
man/lsodes.Rd | 1056 ++++++++--------
man/ode.1D.Rd | 0
man/ode.2D.Rd | 0
man/ode.3D.Rd | 0
man/ode.Rd | 0
man/ode.band.Rd | 0
man/plot.deSolve.Rd | 0
man/radau.Rd | 2 +-
man/rk.Rd | 2 +-
man/rk4.Rd | 0
man/rkMethod.Rd | 2 +-
man/timelags.Rd | 0
man/vode.Rd | 2 +-
man/zvode.Rd | 0
src/DLLutil.c | 5 +-
src/Makevars | 0
src/R_init_deSolve.c | 118 +-
src/brent.c | 0
src/call_daspk.c | 63 +-
src/call_euler.c | 0
src/call_iteration.c | 3 +-
src/call_lsoda.c | 9 +-
src/call_radau.c | 7 +-
src/call_rk4.c | 0
src/call_rkAuto.c | 0
src/call_rkFixed.c | 0
src/call_rkImplicit.c | 0
src/call_zvode.c | 10 +-
src/daux.f | 0
src/ddaspk.f | 238 +++-
src/deSolve.h | 12 +-
src/deSolve_utils.c | 3 +-
src/dintdy2.f | 8 +-
src/dlinpk.f | 0
src/dlsoder.f | 173 ++-
src/dsparsk.f | 4 +-
src/dvode.f | 2 +-
src/errmsg.f | 6 +-
src/ex_Aquaphy.c | 0
src/ex_CCL4model.c | 0
src/ex_ChemicalDAE.c | 0
src/ex_SCOC.c | 0
src/externalptr.h | 20 +
src/forcings.c | 6 +-
src/lags.c | 0
src/opkda1.f | 760 +++++++----
src/opkdmain.f | 306 ++++-
src/radau5.f | 2 +-
src/radau5a.f | 360 +++++-
src/rk_auto.c | 0
src/rk_fixed.c | 0
src/rk_implicit.c | 0
src/rk_util.c | 24 +-
src/rk_util.h | 0
src/rprintf.c | 0
src/twoDmap.c | 0
src/zvode.f | 321 +++--
src/zvode.h | 0
vignettes/.install_extras | 0
vignettes/aphid.png | Bin
vignettes/comp-event.pdf | Bin
vignettes/compiledCode.Rnw | 0
vignettes/deSolve.Rnw | 0
vignettes/image1D.png | Bin
vignettes/integration.bib | 0
vignettes/mymod.c | 0
vignettes/mymod.f | 0
195 files changed, 4199 insertions(+), 2824 deletions(-)
mode change 100644 => 100755 .Rinstignore
mode change 100644 => 100755 DESCRIPTION
mode change 100644 => 100755 NAMESPACE
mode change 100644 => 100755 NEWS
mode change 100644 => 100755 R/Aquaphy.R
mode change 100644 => 100755 R/DLLfunc.R
mode change 100644 => 100755 R/SCOC.R
mode change 100644 => 100755 R/Utilities.R
mode change 100644 => 100755 R/ccl4model.R
mode change 100644 => 100755 R/checkevents.R
mode change 100644 => 100755 R/cleanEventTimes.R
mode change 100644 => 100755 R/daspk.R
mode change 100644 => 100755 R/dede.R
mode change 100644 => 100755 R/diagnostics.R
mode change 100644 => 100755 R/euler.R
mode change 100644 => 100755 R/forcings.R
mode change 100644 => 100755 R/functions.R
mode change 100644 => 100755 R/iteration.R
mode change 100644 => 100755 R/lsoda.R
mode change 100644 => 100755 R/lsodar.R
mode change 100644 => 100755 R/lsode.R
mode change 100644 => 100755 R/lsodes.R
mode change 100644 => 100755 R/matplot.R
mode change 100644 => 100755 R/ode.R
mode change 100644 => 100755 R/printmessage.R
mode change 100644 => 100755 R/radau.R
mode change 100644 => 100755 R/rk.R
mode change 100644 => 100755 R/rk4.R
mode change 100644 => 100755 R/rkMethod.R
mode change 100644 => 100755 R/vode.R
mode change 100644 => 100755 R/zvode.R
mode change 100644 => 100755 data/ccl4data.rda
create mode 100644 debian/README.source
mode change 100644 => 100755 demo/00Index
mode change 100644 => 100755 demo/CCL4model.R
mode change 100644 => 100755 demo/odedim.R
mode change 100644 => 100755 inst/CITATION
mode change 100644 => 100755 inst/doc/compiledCode.Rnw
mode change 100644 => 100755 inst/doc/deSolve.Rnw
mode change 100644 => 100755 inst/doc/dynload-dede/dedeUtils.c
mode change 100644 => 100755 inst/doc/dynload-dede/dede_lv.R
mode change 100644 => 100755 inst/doc/dynload-dede/dede_lv.c
mode change 100644 => 100755 inst/doc/dynload-dede/dede_lv2.R
mode change 100644 => 100755 inst/doc/dynload-dede/dede_lv2.c
mode change 100644 => 100755 inst/doc/dynload-dede/dede_lv2F.f
mode change 100644 => 100755 inst/doc/dynload-dede/dede_lvF.f
mode change 100644 => 100755 inst/doc/dynload-dede/dedesimple.R
mode change 100644 => 100755 inst/doc/dynload-dede/dedesimple.c
mode change 100644 => 100755 inst/doc/dynload-dede/dedesimpleF.f
mode change 100644 => 100755 inst/doc/dynload/Aquaphy.f
mode change 100644 => 100755 inst/doc/dynload/AquaphyEvent.R
mode change 100644 => 100755 inst/doc/dynload/AquaphyForcing.R
mode change 100644 => 100755 inst/doc/dynload/AquaphyForcing.f
mode change 100644 => 100755 inst/doc/dynload/CCL4model.f
mode change 100644 => 100755 inst/doc/dynload/ChemicalDAE.f
mode change 100644 => 100755 inst/doc/dynload/Forcing_lv.R
mode change 100644 => 100755 inst/doc/dynload/Forcing_lv.c
mode change 100644 => 100755 inst/doc/dynload/SCOC.f
mode change 100644 => 100755 inst/doc/dynload/daspkdll.R
mode change 100644 => 100755 inst/doc/dynload/daspkfor.f
mode change 100644 => 100755 inst/doc/dynload/ex_Aquaphy.c
mode change 100644 => 100755 inst/doc/dynload/ex_Aquaphy.f
mode change 100644 => 100755 inst/doc/dynload/ex_CCL4model.c
mode change 100644 => 100755 inst/doc/dynload/ex_CCL4model.f
mode change 100644 => 100755 inst/doc/dynload/ex_SCOC.c
mode change 100644 => 100755 inst/doc/dynload/ex_SCOC.f
mode change 100644 => 100755 inst/doc/dynload/intakes.RData
mode change 100644 => 100755 inst/doc/dynload/lsodardll.R
mode change 100644 => 100755 inst/doc/dynload/lsodarfor.f
mode change 100644 => 100755 inst/doc/dynload/odeband.R
mode change 100644 => 100755 inst/doc/dynload/odeband.f
mode change 100644 => 100755 inst/doc/dynload/odec.c
mode change 100644 => 100755 inst/doc/dynload/odedll.R
mode change 100644 => 100755 inst/doc/dynload/odefor.f
mode change 100644 => 100755 inst/doc/dynload/odefor2.f
mode change 100644 => 100755 inst/doc/dynload/radaudae.f
mode change 100644 => 100755 inst/doc/dynload/radaudaedll.R
mode change 100644 => 100755 inst/doc/dynload/satres.R
mode change 100644 => 100755 inst/doc/dynload/satres.f
mode change 100644 => 100755 inst/doc/dynload/satresC.c
mode change 100644 => 100755 inst/doc/dynload/zvodedll.R
mode change 100644 => 100755 inst/doc/dynload/zvodedll.f
mode change 100644 => 100755 inst/doc/examples/Arenstorf.R
mode change 100644 => 100755 inst/doc/examples/Daphnia_event.R
mode change 100644 => 100755 inst/doc/examples/Nand.R
mode change 100644 => 100755 inst/doc/examples/Pollution.R
mode change 100644 => 100755 inst/doc/examples/Schelde_DSA.R
mode change 100644 => 100755 inst/doc/examples/Schelde_FKA.R
mode change 100644 => 100755 inst/doc/examples/Schelde_FNA.R
mode change 100644 => 100755 inst/doc/examples/Schelde_OSA.R
mode change 100644 => 100755 inst/doc/examples/Schelde_pars.R
mode change 100644 => 100755 inst/doc/examples/ballode.R
mode change 100644 => 100755 inst/doc/examples/examples_paper.R
mode change 100644 => 100755 inst/doc/mymod.c
mode change 100644 => 100755 inst/doc/mymod.f
mode change 100644 => 100755 inst/doc/source/ddaspkcomments.txt.gz
mode change 100644 => 100755 inst/doc/source/opkdmain.f.gz
mode change 100644 => 100755 inst/doc/source/opkdmaincomments.txt.gz
mode change 100644 => 100755 inst/doc/source/vodecomments.txt.gz
mode change 100644 => 100755 man/DLLfunc.Rd
mode change 100644 => 100755 man/DLLres.Rd
mode change 100644 => 100755 man/SCOC.Rd
mode change 100644 => 100755 man/aquaphy.Rd
mode change 100644 => 100755 man/ccl4data.Rd
mode change 100644 => 100755 man/ccl4model.Rd
mode change 100644 => 100755 man/cleanEventTimes.Rd
mode change 100644 => 100755 man/daspk.Rd
mode change 100644 => 100755 man/deSolve-internal.Rd
mode change 100644 => 100755 man/deSolve.Rd
mode change 100644 => 100755 man/dede.Rd
mode change 100644 => 100755 man/diagnostics.Rd
mode change 100644 => 100755 man/diagnostics.deSolve.Rd
mode change 100644 => 100755 man/events.Rd
mode change 100644 => 100755 man/forcings.Rd
mode change 100644 => 100755 man/lsoda.Rd
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mode change 100644 => 100755 man/ode.1D.Rd
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mode change 100644 => 100755 man/ode.Rd
mode change 100644 => 100755 man/ode.band.Rd
mode change 100644 => 100755 man/plot.deSolve.Rd
mode change 100644 => 100755 man/radau.Rd
mode change 100644 => 100755 man/rk.Rd
mode change 100644 => 100755 man/rk4.Rd
mode change 100644 => 100755 man/rkMethod.Rd
mode change 100644 => 100755 man/timelags.Rd
mode change 100644 => 100755 man/vode.Rd
mode change 100644 => 100755 man/zvode.Rd
mode change 100644 => 100755 src/DLLutil.c
mode change 100644 => 100755 src/Makevars
mode change 100644 => 100755 src/R_init_deSolve.c
mode change 100644 => 100755 src/brent.c
mode change 100644 => 100755 src/call_daspk.c
mode change 100644 => 100755 src/call_euler.c
mode change 100644 => 100755 src/call_iteration.c
mode change 100644 => 100755 src/call_lsoda.c
mode change 100644 => 100755 src/call_radau.c
mode change 100644 => 100755 src/call_rk4.c
mode change 100644 => 100755 src/call_rkAuto.c
mode change 100644 => 100755 src/call_rkFixed.c
mode change 100644 => 100755 src/call_rkImplicit.c
mode change 100644 => 100755 src/call_zvode.c
mode change 100644 => 100755 src/daux.f
mode change 100644 => 100755 src/ddaspk.f
mode change 100644 => 100755 src/deSolve.h
mode change 100644 => 100755 src/deSolve_utils.c
mode change 100644 => 100755 src/dintdy2.f
mode change 100644 => 100755 src/dlinpk.f
mode change 100644 => 100755 src/dlsoder.f
mode change 100644 => 100755 src/dsparsk.f
mode change 100644 => 100755 src/dvode.f
mode change 100644 => 100755 src/errmsg.f
mode change 100644 => 100755 src/ex_Aquaphy.c
mode change 100644 => 100755 src/ex_CCL4model.c
mode change 100644 => 100755 src/ex_ChemicalDAE.c
mode change 100644 => 100755 src/ex_SCOC.c
create mode 100755 src/externalptr.h
mode change 100644 => 100755 src/forcings.c
mode change 100644 => 100755 src/lags.c
mode change 100644 => 100755 src/opkda1.f
mode change 100644 => 100755 src/opkdmain.f
mode change 100644 => 100755 src/radau5.f
mode change 100644 => 100755 src/radau5a.f
mode change 100644 => 100755 src/rk_auto.c
mode change 100644 => 100755 src/rk_fixed.c
mode change 100644 => 100755 src/rk_implicit.c
mode change 100644 => 100755 src/rk_util.c
mode change 100644 => 100755 src/rk_util.h
mode change 100644 => 100755 src/rprintf.c
mode change 100644 => 100755 src/twoDmap.c
mode change 100644 => 100755 src/zvode.f
mode change 100644 => 100755 src/zvode.h
mode change 100644 => 100755 vignettes/.install_extras
mode change 100644 => 100755 vignettes/aphid.png
mode change 100644 => 100755 vignettes/comp-event.pdf
mode change 100644 => 100755 vignettes/compiledCode.Rnw
mode change 100644 => 100755 vignettes/deSolve.Rnw
mode change 100644 => 100755 vignettes/image1D.png
mode change 100644 => 100755 vignettes/integration.bib
mode change 100644 => 100755 vignettes/mymod.c
mode change 100644 => 100755 vignettes/mymod.f
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