[cod-tools] branch master updated (c231562 -> 37ea492)
Andrius Merkys
merkys-guest at moszumanska.debian.org
Tue Sep 26 06:52:18 UTC 2017
This is an automated email from the git hooks/post-receive script.
merkys-guest pushed a change to branch master
in repository cod-tools.
from c231562 Adding 'Vcs-Browser' field to debian/control.
adds 3c32c3d Imported Upstream version 2.0
new b26f33c Adding debian/ files, as generated by dh_make (for 'indep binary').
new f775194 Adding ITP number to changelog, fixing e-mail address.
new 83ea560 Removing unneccessary files under debian/.
new cad2c28 Restoring previous debian/control file.
new f1e08b7 Restoring previous contents of debian/copyright.
new 37ea492 Restoring previous debian/* files.
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 1 +
.version | 3 +
CHANGELOG | 488 +
Makeconf | 55 +
Makefile | 2 +-
Makelocal-install | 107 +
Makelocal-manpages | 24 +
Makelocal-version | 50 +
MasterMakefile | 59 -
README | 23 +
README-COPYING | 6 +
README.md | 41 -
data/AtomProperties/Makeconf | 17 +
data/AtomProperties/Makefile | 43 +
data/AtomProperties/TO-DO | 2 +
data/AtomProperties/bin/R/plot_properties.R | 11 +
data/AtomProperties/bin/atom_properties_merge | 274 +
data/AtomProperties/bin/compare_properties | 143 +
.../dependencies/LinuxMint-17.2/install.sh | 4 +
data/AtomProperties/modules/AtomProperties.pm | 2333 +
data/AtomProperties/modules/AtomProperties.yaml | 3146 +
data/AtomProperties/modules/AtomPropertiesCOD.pm | 1269 +
data/AtomProperties/modules/AtomPropertiesCOD.yaml | 1335 +
data/AtomProperties/nomenclature | 26 +
data/AtomProperties/parts/core/BlueObelisk/core | 45 +
.../parts/core/BlueObelisk/input.yaml | 1 +
.../covalent_radii/Cordero2008/covalent_radii | 55 +
.../parts/covalent_radii/Cordero2008/input.yaml | 1 +
.../Pyykk\303\2662009/covalent_radii" | 48 +
.../covalent_radii/Pyykk\303\2662009/input.yaml" | 1 +
.../parts/oxidation/wikipedia/input.yaml | 1 +
.../parts/oxidation/wikipedia/oxidation_states | 3 +
.../parts/spin_state_radii/Cordero2008/input.yaml | 1 +
.../spin_state_radii/Cordero2008/spin_state_radii | 57 +
.../parts/valence/EconomicExpert/input.yaml | 1 +
.../parts/valence/EconomicExpert/valence | 3 +
.../parts/valence/wikipedia/input.yaml | 1 +
.../AtomProperties/parts/valence/wikipedia/valence | 75 +
.../parts/vdw_radii/Alvarez2012/input.yaml | 1 +
.../parts/vdw_radii/Alvarez2012/vdw_radii | 46 +
.../AtomProperties/parts/vdw_radii/LANL/input.yaml | 1 +
data/AtomProperties/parts/vdw_radii/LANL/vdw_radii | 46 +
data/AtomProperties/patches/BO_groups_patch.yaml | 87 +
data/AtomProperties/patches/actinides_group.yaml | 47 +
data/AtomProperties/patches/actinides_period.yaml | 47 +
data/AtomProperties/patches/common_charges.yaml | 5 +
data/AtomProperties/patches/deuterium.yaml | 21 +
data/AtomProperties/patches/dummy.yaml | 20 +
data/AtomProperties/patches/lanthanides_group.yaml | 47 +
.../AtomProperties/patches/lanthanides_period.yaml | 47 +
data/AtomProperties/patches/vdw_radii_Alvarez.yaml | 67 +
data/AtomProperties/sources/Alvarez2012/input.yaml | 382 +
.../sources/BlueObelisk/atom_properties_BO | 142 +
.../sources/BlueObelisk/elements.xml | 2696 +
data/AtomProperties/sources/BlueObelisk/input.yaml | 1241 +
data/AtomProperties/sources/Cordero2008/input.yaml | 552 +
.../sources/EconomicExpert/input.yaml | 531 +
data/AtomProperties/sources/LANL/extract_info | 87 +
data/AtomProperties/sources/LANL/input.yaml | 881 +
.../sources/Pyykk\303\2662009/input.yaml" | 674 +
.../tetrahedral_covalent_radii_Pyykk\303\266" | 151 +
data/AtomProperties/sources/wikipedia/input.yaml | 1146 +
.../sources/wikipedia/oxidation_states | 86 +
.../sources/wikipedia/oxidation_states.html | 2698 +
data/COD-log-statistics/.cif_fix_statistics.d | 11 +
data/COD-log-statistics/Makefile | 1 +
data/COD-log-statistics/cif_fix_statistics.com | 56 +
data/COD-log-statistics/cif_fix_statistics.log | 17 +
data/COD-log-statistics/inputs/cod | 1 +
data/COD-log-statistics/make.log | 12 +
.../outputs/cif_fix_statistics.dat | 2957 +
data/COD-log-statistics/paths.sh | 9 +
data/Cromer-Mann/Cromer_Mann_coefficients.stderr | 2 +
data/Cromer-Mann/Cromer_Mann_coefficients.tab | 24990 ++
data/Cromer-Mann/Cromer_Mann_coefficients_cif.log | 4836 +
data/Cromer-Mann/sort_CM_coefficients | 212 +
data/Entrez-DTDs/nlmcommon_080101.dtd | 201 +
data/Entrez-DTDs/nlmmedline_080101.dtd | 71 +
data/Entrez-DTDs/nlmmedlinecitation_080101.dtd | 107 +
data/Entrez-DTDs/nlmsharedcatcit_080101.dtd | 80 +
data/Entrez-DTDs/pubmed_080101.dtd | 71 +
data/makefiles | 1 +
data/provisional-dictionaries/cif_oqmd.dic | 170 +
data/replacement-values/replacement_tags.lst | 216 +
data/tag-lists/CIF-R-factor-tags.lst | 26 +
.../CIF_radiation_tags_with_descriptions.lst | 43 +
data/tag-lists/Dict-R-factor-tags.lst | 11 +
data/tag-lists/all-dictionary-tags.lst | 3581 +
data/tag-lists/cif_dft-tags.lst | 83 +
data/tag-lists/cif_tcod-tags.lst | 114 +
data/tag-lists/cod-private-tags.lst | 23 +
debian/changelog | 4 +-
debian/compat | 2 +-
debian/copyright | 1 -
debian/docs | 2 +
dependencies/CentOS-6.8/build.sh | 5 +
dependencies/CentOS-6.8/install.sh | 4 +
dependencies/CentOS-6.8/run.sh | 13 +
dependencies/{Raspbian-8.0 => Debian-7.8} | 0
dependencies/{Raspbian-8.0 => Debian-8.2} | 0
dependencies/Debian-8.6/build.sh | 15 +
dependencies/Debian-8.6/install.sh | 5 +
dependencies/Debian-8.6/run.sh | 24 +
dependencies/Debian-8.6/test.sh | 7 +
dependencies/LinuxMint-17.2 | 1 +
dependencies/LinuxMint-18.1/build.sh | 15 +
dependencies/LinuxMint-18.1/install.sh | 5 +
dependencies/LinuxMint-18.1/run.sh | 23 +
dependencies/LinuxMint-18.1/test.sh | 7 +
dependencies/Ubuntu-12.04/build.sh | 15 +
dependencies/Ubuntu-12.04/install.sh | 4 +-
dependencies/Ubuntu-12.04/run.sh | 23 +
dependencies/Ubuntu-12.04/test.sh | 7 +
dependencies/{Raspbian-8.0 => Ubuntu-14.04} | 0
dependencies/Ubuntu-16.04 | 1 +
doc/CIF-ideas.txt | 19 +
doc/CODDictionary.xml | 817 +
doc/ITP.txt | 36 -
doc/IUCr/cifguide.pdf | Bin 0 -> 312734 bytes
doc/IUCr/merging-dictionaries.html | 730 +
doc/IUCr/names.html | 1074 +
doc/IUCr/names_files/formrequest.js | 69 +
doc/IUCr/names_files/helpit.js | 31 +
doc/IUCr/names_files/iucr.gif | Bin 0 -> 3347 bytes
doc/IUCr/names_files/menupopup.js | 6 +
doc/IUCr/names_files/myarrow.png | Bin 0 -> 329 bytes
doc/IUCr/names_files/myarrow_002.png | Bin 0 -> 329 bytes
doc/IUCr/names_files/ourstyle.css | 805 +
doc/IUCr/names_files/overlib.js | 1491 +
doc/IUCr/names_files/overlib_anchor.js | 333 +
doc/IUCr/names_files/overlib_shadow.js | 270 +
doc/TO-DO/CIF2COD-TO-DO.txt | 93 +
doc/TO-DO/COD-TO-DO.txt | 148 +
doc/TO-DO/TO-DO.txt | 11 +
doc/TO-DO/cif_molecule-TO-DO.txt | 69 +
doc/TO-DO/debian-package-TO-DO.txt | 23 +
doc/Z-formula.txt | 25 +
doc/cif-schema.json | 69 +
doc/database-scheme-draft.pdf | 17381 +
doc/error-levels.txt | 57 +
doc/error-messages-conventions.txt | 290 +
doc/error-msg.txt | 3 +
doc/examples/epost.pl | 112 +
doc/examples/eutils_example.pl | 97 +
doc/formats/cif_distances_distance_matrix_v1.0.txt | 71 +
.../cif_distances_pairwise_distance_v1.0.txt | 47 +
doc/input-output-format-CLI.txt | 52 +
doc/internal-cif-representation.txt | 105 +
doc/journal-names/COD-journals.lst | 495 +
doc/journal-names/J_Entrez.gz | Bin 0 -> 940078 bytes
doc/journal-names/J_Medline.gz | Bin 0 -> 876638 bytes
doc/journal-names/J_Sequence.gz | Bin 0 -> 220597 bytes
doc/journal-names/coden.html | 3930 +
doc/journal-names/journal-abbreviations.xml | 326324 ++++++++++++++++++
doc/man/.gitignore | 1 +
doc/perl-error-message-handling.txt | 375 +
doc/self-care_features.txt | 65 +
doc/superspacegroups/superspacegroups.csv | 780 +
doc/symmetry-disorder-problem.txt | 12 +
helpers/bash-completion.sh | 34 +
helpers/cif.lang | 72 +
makefiles/Makeconfig-subdirs-example | 17 +
makefiles/Makefile-backbone | 24 +
makefiles/Makefile-perl-multiscript-tests | 343 +
makefiles/Makefile-run_coms | 39 +
makefiles/Makefile-subdirs | 35 +
makefiles/Makelocal-YAPP-module | 46 +
makefiles/Makelocal-benchmark | 48 +
makefiles/Makelocal-clean-pyc | 4 +
makefiles/Makelocal-unit-test | 132 +
scripts/.gitignore | 1 +
scripts/cif-to-utf8 | 45 +
scripts/cif2cod | 394 +
scripts/cif2csv | 157 +
scripts/cif2json | 142 +
scripts/cif2rdf | 407 +
scripts/cif2ref | 281 +
scripts/cif2xyz | 181 +
scripts/cif_CODify | 100 +
scripts/cif_Fcalc | 1321 +
scripts/cif_adjust_journal_name_volume | 121 +
scripts/cif_bounding_box | 190 +
scripts/cif_cell_contents | 211 +
scripts/cif_classify | 117 +
scripts/cif_cod_check | 1732 +
scripts/cif_cod_deposit | 581 +
scripts/cif_cod_numbers | 313 +
scripts/cif_correct_tags | 279 +
scripts/cif_create_AMCSD_pressure_temp_tags | 308 +
scripts/cif_dictionary_tags | 99 +
scripts/cif_diff | 253 +
scripts/cif_distances | 650 +
scripts/cif_estimate_Z | 92 +
scripts/cif_eval_numbers | 567 +
scripts/cif_fillcell | 284 +
scripts/cif_filter | 1593 +
scripts/cif_find_duplicates | 389 +
scripts/cif_find_symmetry | 398 +
scripts/cif_fix_values | 1581 +
scripts/cif_hkl_COD_number | 405 +
scripts/cif_hkl_check | 249 +
scripts/cif_mark_disorder | 619 +
scripts/cif_merge | 266 +
scripts/cif_molecule | 2707 +
scripts/cif_mpod_v1_to_v2 | 272 +
scripts/cif_mpod_v1_to_v3 | 364 +
scripts/cif_mpod_v2_to_v1 | 229 +
scripts/cif_mpod_v3_to_v1 | 310 +
scripts/cif_overlay | 264 +
scripts/cif_p1 | 1795 +
scripts/cif_parse | 73 +
scripts/cif_parse_old_star | 48 +
scripts/cif_printout | 157 +
scripts/cif_printout_Python | 87 +
scripts/cif_reduce_Niggli | 233 +
scripts/cif_reduce_cell | 211 +
scripts/cif_reformat_AMCSD_author_names | 128 +
scripts/cif_reformat_pubmed_author_names | 183 +
scripts/cif_reformat_uppercase_author_names | 111 +
scripts/cif_select | 237 +
scripts/cif_set_value | 99 +
scripts/cif_split | 286 +
scripts/cif_split_primitive | 182 +
scripts/cif_symop_apply | 122 +
scripts/cif_tags_in_list | 86 +
scripts/cif_tcod_tree | 247 +
scripts/cif_validate | 795 +
scripts/cif_values | 300 +
scripts/cod-tools-version.in | 15 +
scripts/cod2rdf | 408 +
scripts/cod_fetch | 82 +
scripts/cod_predeposition_check | 252 +
scripts/codcif2sdf | 129 +
scripts/fetch_cif_dict | 251 +
scripts/find_numbers | 394 +
scripts/formula_sum | 46 +
scripts/json2cif | 136 +
scripts/molcif2sdf | 172 +
scripts/msg_parse | 118 +
scripts/oqmd2cif | 507 +
scripts/sdf_add_cod_data | 145 +
scripts/ssg3d | 99 +
scripts/ssg_symop_canonical | 44 +
scripts/ssg_symop_check | 50 +
scripts/ssg_symop_matrices | 67 +
scripts/ssg_symop_string | 79 +
scripts/symop_build_spacegroup | 67 +
scripts/utf8-to-cif | 45 +
src/Makefile | 1 +
src/components/Makefile | 1 +
src/components/codcif/.gitignore | 6 +
src/components/codcif/.version | 1 +
src/components/codcif/Makeconf | 9 +
src/components/codcif/Makefile | 419 +
src/components/codcif/Makelocal-version | 1 +
src/components/codcif/README-TO-DO.txt | 37 +
src/components/codcif/TO-DO | 24 +
src/components/codcif/cif.c | 387 +
src/components/codcif/cif.h | 97 +
src/components/codcif/cif2_grammar.y | 702 +
src/components/codcif/cif2_grammar_y.h | 21 +
src/components/codcif/cif2_lexer.c | 829 +
src/components/codcif/cif2_lexer.h | 40 +
src/components/codcif/cif_compiler.c | 578 +
src/components/codcif/cif_compiler.h | 91 +
src/components/codcif/cif_grammar.y | 597 +
src/components/codcif/cif_grammar_flex.c | 96 +
src/components/codcif/cif_grammar_flex.h | 44 +
src/components/codcif/cif_grammar_y.h | 21 +
src/components/codcif/cif_lexer.c | 674 +
src/components/codcif/cif_lexer.h | 40 +
src/components/codcif/cif_options.c | 84 +
src/components/codcif/cif_options.h | 40 +
src/components/codcif/ciflist.c | 151 +
src/components/codcif/ciflist.h | 32 +
src/components/codcif/cifmessage.c | 203 +
src/components/codcif/cifmessage.h | 52 +
src/components/codcif/ciftable.c | 144 +
src/components/codcif/ciftable.h | 29 +
src/components/codcif/cifvalue.c | 105 +
src/components/codcif/cifvalue.h | 46 +
src/components/codcif/common.c | 379 +
src/components/codcif/common.h | 31 +
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.../data/IUCr/CIFTEST_2.1/CIFTEST_README.html | 378 +
.../codcif/data/IUCr/CIFTEST_2.1/COPYING | 25 +-
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.../data/IUCr/CIFTEST_2.1/origs/ciftbx/cif_mm.dic | 1 +
.../data/IUCr/CIFTEST_2.1/origs/ciftbx/mtest.prt | 1837 +
.../data/IUCr/CIFTEST_2.1/origs/ciftbx/qtest.cif | 46 +
.../data/IUCr/CIFTEST_2.1/origs/ciftbx/qtest.req | 24 +
.../data/IUCr/CIFTEST_2.1/origs/ciftbx/test.cif | 124 +
.../data/IUCr/CIFTEST_2.1/origs/ciftbx/test.prt | 365 +
.../data/IUCr/CIFTEST_2.1/origs/ciftbx/test.req | 95 +
.../data/IUCr/CIFTEST_2.1/origs/ciftbx/testrle.prt | 0
.../data/IUCr/CIFTEST_2.1/origs/ciftbx/xtalt2.cif | 169 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest0 | 0
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest1 | 1 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest10 | 32 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest11 | 40 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest2 | 2 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest3 | 3 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest4 | 22 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest5 | 111 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest6 | 33 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest7 | 25 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest8 | 21 +
.../data/IUCr/CIFTEST_2.1/origs/vcif/ciftest9 | 41 +
.../CIFTEST_2.1/outs/cif2cbf/c2ctest0.cif.result | 27 +
.../CIFTEST_2.1/outs/cif2cbf/c2ctest1.cif.result | 24 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest0.cif.result | 3 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest1.cif.result | 3 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest10.cif.result | 28 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest11.cif.result | 66 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest2.cif.result | 7 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest3.cif.result | 8 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest4.cif.result | 27 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest5.cif.result | 127 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest6.cif.result | 51 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest7.cif.result | 27 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest8.cif.result | 35 +
.../CIFTEST_2.1/outs/cif2cbf/ciftest9.cif.result | 28 +
.../IUCr/CIFTEST_2.1/outs/ciffold/1ejg_out.cif | 3453 +
.../IUCr/CIFTEST_2.1/outs/ciffold/1ejg_out2.cif | 3453 +
.../IUCr/CIFTEST_2.1/outs/ciffold/1ejg_rebuilt.cif | 2248 +
.../CIFTEST_2.1/outs/ciffold/1ejg_rebuilt2.cif | 2248 +
.../IUCr/CIFTEST_2.1/outs/ciffold/1zrt_out.cif | 30891 ++
.../IUCr/CIFTEST_2.1/outs/ciffold/1zrt_out2.cif | 30891 ++
.../IUCr/CIFTEST_2.1/outs/ciffold/1zrt_rebuilt.cif | 17430 +
.../CIFTEST_2.1/outs/ciffold/1zrt_rebuilt2.cif | 17430 +
.../CIFTEST_2.1/outs/ciffold/longcomments_out.cif | 128 +
.../CIFTEST_2.1/outs/ciffold/longcomments_out2.cif | 128 +
.../IUCr/CIFTEST_2.1/outs/ciffold/longtext_out.cif | 406 +
.../CIFTEST_2.1/outs/ciffold/longtext_out2.cif | 414 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1ace.stwid | 5433 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1ace.tpdb | 5455 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1ace.twid | 5434 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1crn.tpdb | 903 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1crn.twid | 888 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1cro.tpdb | 1002 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1cro.twid | 997 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1cwp.tpdb | 5348 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1cwp.twid | 5356 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1hyh.tpdb | 12554 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1hyh.twid | 12410 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1zrt.tpdb | 16942 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/1zrt.twid | 16844 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/2ace.tpdb | 6084 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/2ace.twid | 6026 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4hir.tpdb | 66212 ++++
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4hir.twid | 65890 ++++
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4ins.out | 4427 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4ins.out.x | 1999 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4ins.prt | 900 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4ins.prt.x | 856 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4ins.tpdb | 2114 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4ins.twid | 2079 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4insuw.out | 2161 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4insuw.prt | 0
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4insw.out | 3476 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/4insw.prt | 900 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/5hvp.tpdb | 2855 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/5hvp.twid | 2803 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/ADH041.tpdb | 466 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/ADH041.twid | 464 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/BDL001.tpdb | 884 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/BDL001.twid | 883 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/BDLB13.tpdb | 908 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/BDLB13.twid | 905 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/DDF040.tpdb | 515 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/DDF040.twid | 509 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/c2ctest0.out | 20 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/c2ctest1.out | 21 +
.../IUCr/CIFTEST_2.1/outs/ciftbx/cyclops_test.prt | 596 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/mtest.cyc | 245 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/mtest.out | 74 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/mtest.prt | 1837 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/mtest.xml | 381 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/qtest.out | 97 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/qtest.prt | 8 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/test.out | 81 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/test.prt | 365 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/testrle.prt | 0
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/xtalt2.out | 177 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/xtalt2.out.x | 639 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/xte29.out | 177 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/xte29.out.x | 597 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/xttne9.out | 170 +
.../data/IUCr/CIFTEST_2.1/outs/ciftbx/xttne9.out.x | 207 +
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest0.result | 1 +
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest1.result | 1 +
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest10.result | 3 +
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest11.result | 0
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest2.result | 1 +
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest3.result | 0
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest4.result | 0
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest5.result | 0
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest6.result | 3 +
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest7.result | 25 +
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest8.result | 3 +
.../IUCr/CIFTEST_2.1/outs/vcif/ciftest9.result | 25 +
src/components/codcif/datablock.c | 546 +
src/components/codcif/datablock.h | 84 +
src/components/codcif/inputs/1004001-disorder.cif | 465 +
.../codcif/inputs/1508696-long-text-field.cif | 163974 +++++++++
src/components/codcif/inputs/2000000.cif | 148 +
src/components/codcif/inputs/4067640.cif | 761 +
src/components/codcif/inputs/4318422.cif | 312 +
src/components/codcif/inputs/4319975.cif | 685 +
src/components/codcif/inputs/7052868.cif | 529 +
src/components/codcif/inputs/9007991.cif | 304 +
src/components/codcif/inputs/DDLm_3.11.09.dic | 2533 +
src/components/codcif/inputs/b413434f.txt | 2303 +
src/components/codcif/inputs/bad.cif | 1 +
src/components/codcif/inputs/blank.cif | 1 +
src/components/codcif/inputs/bracket.cif | 2 +
.../broken-with-comments-and-empty-lines.cif | 22 +
.../codcif/inputs/broken-with-multiple-spaces.cif | 22 +
src/components/codcif/inputs/broken.cif | 5 +
.../inputs/c3cc49066a-derived-text-field-CRLF.txt | 1607 +
.../inputs/c3cc49066a-long-text-field-CRLF.txt | 146345 ++++++++
src/components/codcif/inputs/c3ce00059a.txt | 758 +
src/components/codcif/inputs/cif-strings.cif | 6 +
src/components/codcif/inputs/cif2_text.cif | 15 +
src/components/codcif/inputs/cif2cbf/c2ctest0.cif | 1 +
src/components/codcif/inputs/cif2cbf/c2ctest1.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest0.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest1.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest10.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest11.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest2.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest3.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest4.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest5.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest6.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest7.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest8.cif | 1 +
src/components/codcif/inputs/cif2cbf/ciftest9.cif | 1 +
src/components/codcif/inputs/cif_mm_2.0.09.dic | 44595 +++
src/components/codcif/inputs/ciffold/1ejg.cif | 1 +
src/components/codcif/inputs/ciffold/1zrt.cif | 1 +
.../codcif/inputs/ciffold/longcomments.cif | 1 +
src/components/codcif/inputs/ciffold/longtext.cif | 1 +
src/components/codcif/inputs/ciftbx/1ace.cif | 1 +
src/components/codcif/inputs/ciftbx/1crn.cif | 1 +
src/components/codcif/inputs/ciftbx/1cro.cif | 1 +
src/components/codcif/inputs/ciftbx/1cwp.cif | 1 +
src/components/codcif/inputs/ciftbx/1hyh.cif | 1 +
src/components/codcif/inputs/ciftbx/1zrt.cif | 1 +
src/components/codcif/inputs/ciftbx/2ace.cif | 1 +
src/components/codcif/inputs/ciftbx/4hir.cif | 1 +
src/components/codcif/inputs/ciftbx/4ins.cif | 1 +
src/components/codcif/inputs/ciftbx/5hvp.cif | 1 +
src/components/codcif/inputs/ciftbx/ADH041.cif | 1 +
src/components/codcif/inputs/ciftbx/BDL001.cif | 1 +
src/components/codcif/inputs/ciftbx/BDLB13.cif | 1 +
src/components/codcif/inputs/ciftbx/DDF040.cif | 1 +
src/components/codcif/inputs/ciftbx/c2ctest0.cif | 1 +
src/components/codcif/inputs/ciftbx/c2ctest1.cif | 1 +
src/components/codcif/inputs/ciftbx/qtest.cif | 1 +
src/components/codcif/inputs/ciftbx/test.cif | 1 +
src/components/codcif/inputs/ciftbx/xtalt2.cif | 1 +
.../codcif/inputs/comments-and-blanks.cif | 12 +
src/components/codcif/inputs/comments.cif | 2 +
src/components/codcif/inputs/dogs_life_in_cif.cif | 4 +
src/components/codcif/inputs/dos-ctrl-z.cif | 10 +
.../codcif/inputs/duplicate_identical_tag.cif | 10 +
src/components/codcif/inputs/duplicate_tag.cif | 1 +
.../codcif/inputs/empty-lines-after-comments.cif | 7 +
src/components/codcif/inputs/empty.cif | 0
src/components/codcif/inputs/escaped_symbols.cif | 3 +
src/components/codcif/inputs/kuku.cif | 8 +
src/components/codcif/inputs/long-text.cif | 8 +
src/components/codcif/inputs/more-text-fields.cif | 21 +
src/components/codcif/inputs/multiline-blank.cif | 3 +
src/components/codcif/inputs/multiline-text.cif | 8 +
src/components/codcif/inputs/non-ascii.cif | 23 +
src/components/codcif/inputs/not-reals.cif | 63 +
src/components/codcif/inputs/number-tables1.cif | 18 +
src/components/codcif/inputs/number-tables2.cif | 11 +
src/components/codcif/inputs/reals.cif | 44 +
src/components/codcif/inputs/reals2.cif | 56 +
src/components/codcif/inputs/save.dic | 28 +
.../codcif/inputs/semicolon-after-quote.cif | 15 +
.../codcif/inputs/single-comment-line-noCR.cif | 1 +
.../codcif/inputs/single-comment-line.cif | 1 +
src/components/codcif/inputs/string-spaces.cif | 2 +
src/components/codcif/inputs/t-err.cif | 4 +
src/components/codcif/inputs/t.cif | 4 +
.../inputs/tag-immediately-following-textfield.cif | 5 +
.../inputs/unquoted-closing-bracket-string.cif | 3 +
.../codcif/inputs/unquoted-closing-bracket.cif | 3 +
.../codcif/inputs/unterminated-strings.cif | 7 +
.../codcif/inputs/unterminated-text-field.cif | 11 +
.../codcif/inputs/uqstrings-with-semicolons.cif | 14 +
.../codcif/inputs/whitespace-in-values.cif | 8 +
src/components/codcif/lib/.gitignore | 2 +
src/components/codcif/obj/.gitignore | 1 +
src/components/codcif/outputs/.gitignore | 1 +
src/components/codcif/outputs/cifparse_001.out | 1 +
src/components/codcif/outputs/cifparse_002.out | 1 +
src/components/codcif/outputs/cifparse_003.out | 1 +
src/components/codcif/outputs/cifparse_004.out | 1 +
src/components/codcif/outputs/cifparse_005.out | 136 +
src/components/codcif/outputs/cifparse_006.out | 750 +
src/components/codcif/outputs/cifparse_007.out | 673 +
src/components/codcif/outputs/cifparse_008.out | 519 +
src/components/codcif/outputs/cifparse_009.out | 1 +
src/components/codcif/outputs/cifparse_010.out | 5 +
src/components/codcif/outputs/cifparse_011.out | 2 +
src/components/codcif/outputs/cifparse_012.out | 3 +
src/components/codcif/outputs/cifparse_013.out | 0
src/components/codcif/outputs/cifparse_014.out | 0
src/components/codcif/outputs/cifparse_015.out | 8 +
src/components/codcif/outputs/cifparse_016.out | 2 +
src/components/codcif/outputs/cifparse_017.out | 2 +
src/components/codcif/outputs/cifparse_018.out | 1 +
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src/components/codcif/outputs/cifparse_020.out | 1575 +
src/components/codcif/outputs/cifparse_021.out | 11 +
src/components/codcif/outputs/cifparse_022.out | 1 +
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src/components/codcif/outputs/cifparse_024.out | 10 +
src/components/codcif/outputs/cifparse_025.out | 5 +
src/components/codcif/outputs/cifparse_026.out | 9 +
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src/components/codcif/outputs/cifparse_028.out | 3 +
src/components/codcif/outputs/cifparse_029.out | 2 +
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src/components/codcif/outputs/cifparse_032.out | 3 +
src/components/codcif/outputs/cifparse_033.out | 1 +
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src/components/codcif/outputs/cifparse_036.out | 40 +
src/components/codcif/outputs/cifparse_037.out | 1 +
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src/components/codcif/outputs/cifparse_042.out | 1 +
src/components/codcif/outputs/cifparse_043.out | 1 +
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src/components/codcif/outputs/cifparse_045.out | 6 +
src/components/codcif/outputs/cifparse_046.out | 4 +
src/components/codcif/outputs/cifparse_047.out | 4 +
src/components/codcif/outputs/cifparse_048.out | 5 +
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src/components/codcif/outputs/cifparse_055.out | 9 +
src/components/codcif/outputs/cifparse_056.out | 1 +
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src/components/codcif/outputs/cifparse_066.out | 1 +
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src/components/codcif/outputs/cifparse_072.out | 1 +
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src/components/codcif/outputs/cifparse_074.out | 32 +
src/components/codcif/outputs/cifparse_075.out | 4 +
src/components/codcif/outputs/cifparse_076.out | 60 +
src/components/codcif/outputs/cifparse_077.out | 1 +
src/components/codcif/outputs/cifparse_078.out | 60 +
src/components/codcif/outputs/cifparse_079.out | 1 +
src/components/codcif/outputs/cifparse_080.out | 1 +
src/components/codcif/outputs/cifparse_081.out | 2 +
src/components/codcif/outputs/cifparse_082.out | 2 +
src/components/codcif/outputs/cifparse_083.out | 1 +
src/components/codcif/outputs/cifparse_084.out | 48 +
src/components/codcif/outputs/cifparse_085.out | 60 +
src/components/codcif/outputs/cifparse_086.out | 13 +
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src/components/codcif/outputs/cifparse_088.out | 2 +
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src/components/codcif/outputs/cifparse_090.out | 4 +
src/components/codcif/outputs/cifparse_091.out | 1 +
src/components/codcif/outputs/cifparse_092.out | 28 +
src/components/codcif/outputs/cifparse_093.out | 43807 +++
src/components/codcif/outputs/cifparse_094.out | 22 +
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src/components/codcif/outputs/cifparse_096.out | 8 +
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src/components/codcif/outputs/cifparse_100.out | 2 +
src/components/codcif/outputs/cifparse_101.out | 56 +
src/components/codcif/outputs/cifparse_102.out | 4 +
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src/components/codcif/outputs/cifparse_105.out | 5 +
src/components/codcif/outputs/cifparse_106.out | 5 +
src/components/codcif/outputs/cifparse_107.out | 1 +
src/components/codcif/outputs/cifparse_108.out | 1 +
src/components/codcif/outputs/cifparse_109.out | 8 +
src/components/codcif/outputs/cifparse_110.out | 1 +
src/components/codcif/outputs/cifparse_111.out | 1 +
src/components/codcif/outputs/cifparse_112.out | 1 +
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src/components/codcif/outputs/cifparse_114.out | 4 +
src/components/codcif/outputs/cifparse_115.out | 5 +
src/components/codcif/outputs/cifparse_116.out | 3 +
src/components/codcif/outputs/cifparse_117.out | 5 +
src/components/codcif/outputs/cifparse_118.out | 2340 +
src/components/codcif/outputs/cifparse_119.out | 4 +
src/components/codcif/outputs/cifparse_120.out | 4 +
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