Bug#715112: Broken library symlink detected in libscotchmetis-dev

David Steele dsteele at gmail.com
Sat Jul 6 05:01:15 UTC 2013


Package: libscotchmetis-dev
Version: 5.1.12b.dfsg-2
Severity: serious
User: debian-qa at lists.debian.org
Usertags: piuparts, broken-symlink, broken-symlink-shared-library

Hi,

During a test with piuparts, I noticed your package is
responsible for the presence of broken symlinks involving
a shared library. Such failures may indicate a significant
problem with the package.

Usually this is caused by a missing Depends. It may also be
triggered if a Recommended or reverse dependency package
owning the symlink target file is not yet installed. This type
of failure mode needs to be eliminated so that other symlink
problems become more visible. In this case, the problem can be
resolved by creating a trigger for the target file. See the
dpkg triggers documentation[1] and an example on the net[2] for
implementation details.

This is being filed as Serious because it represents a violation
of Policy. Section 8 states "Packages containing shared
libraries must be constructed with a little care to make sure
that the shared library is always available".

A link to the log containing the indicated broken symlinks can
be found on piuparts.debian.org[3]. Search for "Warn: Broken
Symlinks" to see the failure point. A log showing the broken
symlink as an error is appended.

The log contains the following broken symlinks:

  /usr/lib/metis-int64/libmetis.a
    -> libscotchmetis.a
  /usr/lib/metis-int64/libmetis.so
    -> libscotchmetis.so
  /usr/lib/metis-int32/libmetis.a
    -> libscotchmetis.a
  /usr/lib/metis-int32/libmetis.so
    -> libscotchmetis.so
  /usr/lib/metis-long/libmetis.a
    -> libscotchmetis.a
  /usr/lib/metis-long/libmetis.so
    -> libscotchmetis.so


[1] - file:///usr/share/doc/dpkg-dev/triggers.txt.gz
[2] - http://www.seanius.net/blog/2009/09/dpkg-triggers-howto/
[3] - http://piuparts.debian.org/sid/broken_symlinks_issue.html


----------

Start: 2013-07-05 21:53:45 EST

Package: libscotchmetis-dev
Source: scotch
Version: 5.1.12b.dfsg-2
Installed-Size: 123
Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
Architecture: amd64
Replaces: libmetis-dev
Depends: libscotch-dev (= 5.1.12b.dfsg-2)
Conflicts: libmetis-dev, libparmetis-dev
Description: programs and libraries for graph, mesh and hypergraph partitioning
Homepage: http://www.labri.fr/perso/pelegrin/scotch/
Description-md5: a391c720b80b18263009a2efcd3d5429
Tag: devel::library, role::devel-lib
Section: libdevel
Priority: extra
Filename: pool/main/s/scotch/libscotchmetis-dev_5.1.12b.dfsg-2_amd64.deb
Size: 30840
MD5sum: 8c5b4b42cc6fdf68950a7a4b4a0ee0c4
SHA1: fe78872ce19e8b274db1bda147cf02d4c499d71d
SHA256: ae5e7ff3a12dc983023de8a79f6d1ec5e07de9adcc54a526aa494dec8a7ee8ed

Executing: sudo piuparts --scriptsdir /etc/piuparts/scripts --skip-logrotatefiles-test --warn-on-others --fail-on-broken-symlinks --mirror http://127.0.0.1/debian --tmpdir /var/tmp --arch amd64 -b /var/cache/piuparts/basetgz/sid.tar.gz -d sid --no-upgrade-test --apt libscotchmetis-dev=5.1.12b.dfsg-2
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile.
0m0.0s INFO: FAQ available at http://wiki.debian.org/piuparts/FAQ
0m0.0s INFO: ------------------------------------------------------------------------------
0m0.0s INFO: piuparts version 0.54~201306172307~0.53-14-ge8900a0 starting up.
0m0.0s INFO: Command line arguments: '/usr/sbin/piuparts' '--scriptsdir' '/etc/piuparts/scripts' '--skip-logrotatefiles-test' '--warn-on-others' '--fail-on-broken-symlinks' '--mirror' 'http://127.0.0.1/debian' '--tmpdir' '/var/tmp' '--arch' 'amd64' '-b' '/var/cache/piuparts/basetgz/sid.tar.gz' '-d' 'sid' '--no-upgrade-test' '--apt' 'libscotchmetis-dev=5.1.12b.dfsg-2'
0m0.0s INFO: Running on: Linux debian-testing 3.9-1-amd64 #1 SMP Debian 3.9.8-1 x86_64
0m0.0s DEBUG: Created temporary directory /var/tmp/tmpvsnc8h
0m0.0s DEBUG: Unpacking /var/cache/piuparts/basetgz/sid.tar.gz into /var/tmp/tmpvsnc8h
0m0.0s DEBUG: Starting command: ['tar', '-C', '/var/tmp/tmpvsnc8h', '-zxf', '/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.4s DEBUG: Command ok: ['tar', '-C', '/var/tmp/tmpvsnc8h', '-zxf', '/var/cache/piuparts/basetgz/sid.tar.gz']
0m1.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'mount', '-t', 'proc', 'proc', '/proc']
0m1.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'mount', '-t', 'proc', 'proc', '/proc']
0m1.4s DEBUG: sources.list:
  deb http://127.0.0.1/debian sid main
  deb http://127.0.0.1/debian sid contrib
  deb http://127.0.0.1/debian sid non-free
0m1.4s DEBUG: Created policy-rc.d and chmodded it.
0m1.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', 'update']
0m7.0s DUMP: 
  Get:1 http://127.0.0.1 sid InRelease [205 kB]
  Get:2 http://127.0.0.1 sid/main amd64 Packages [6398 kB]
  Get:3 http://127.0.0.1 sid/contrib amd64 Packages [48.5 kB]
  Get:4 http://127.0.0.1 sid/non-free amd64 Packages [84.6 kB]
  Get:5 http://127.0.0.1 sid/contrib Translation-en [39.9 kB]
  Get:6 http://127.0.0.1 sid/main Translation-en [4246 kB]
  Get:7 http://127.0.0.1 sid/non-free Translation-en [72.7 kB]
  Fetched 11.1 MB in 4s (2740 kB/s)
  Reading package lists...
0m7.0s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', 'update']
0m7.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', '-yf', 'dist-upgrade']
0m8.4s DUMP: 
  Reading package lists...
  Building dependency tree...
  The following packages will be upgraded:
    apt libapt-pkg4.12 libc-bin libc6 multiarch-support
  5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
  Need to get 8332 kB of archives.
  After this operation, 132 kB of additional disk space will be used.
  Get:1 http://127.0.0.1/debian/ sid/main libc-bin amd64 2.17-7 [1298 kB]
  Get:2 http://127.0.0.1/debian/ sid/main libc6 amd64 2.17-7 [4624 kB]
  Get:3 http://127.0.0.1/debian/ sid/main libapt-pkg4.12 amd64 0.9.9 [926 kB]
  Get:4 http://127.0.0.1/debian/ sid/main apt amd64 0.9.9 [1323 kB]
  Get:5 http://127.0.0.1/debian/ sid/main multiarch-support amd64 2.17-7 [160 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 8332 kB in 0s (39.7 MB/s)
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace libc-bin 2.17-6 (using .../libc-bin_2.17-7_amd64.deb) ...
  Unpacking replacement libc-bin ...
  Setting up libc-bin (2.17-7) ...
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace libc6:amd64 2.17-6 (using .../libc6_2.17-7_amd64.deb) ...
  Unpacking replacement libc6:amd64 ...
  Setting up libc6:amd64 (2.17-7) ...
  Processing triggers for libc-bin ...
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace libapt-pkg4.12:amd64 0.9.8.2 (using .../libapt-pkg4.12_0.9.9_amd64.deb) ...
  Unpacking replacement libapt-pkg4.12:amd64 ...
  Setting up libapt-pkg4.12:amd64 (0.9.9) ...
  Processing triggers for libc-bin ...
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace apt 0.9.8.2 (using .../archives/apt_0.9.9_amd64.deb) ...
  Unpacking replacement apt ...
  Setting up apt (0.9.9) ...
  gpg: key B98321F9: "Squeeze Stable Release Key <debian-release at lists.debian.org>" not changed
  gpg: key 473041FA: "Debian Archive Automatic Signing Key (6.0/squeeze) <ftpmaster at debian.org>" not changed
  gpg: key 65FFB764: "Wheezy Stable Release Key <debian-release at lists.debian.org>" not changed
  gpg: key 46925553: "Debian Archive Automatic Signing Key (7.0/wheezy) <ftpmaster at debian.org>" not changed
  gpg: Total number processed: 4
  gpg:              unchanged: 4
  (Reading database ... 6639 files and directories currently installed.)
  Preparing to replace multiarch-support 2.17-6 (using .../multiarch-support_2.17-7_amd64.deb) ...
  Unpacking replacement multiarch-support ...
  Setting up multiarch-support (2.17-7) ...
0m8.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', '-yf', 'dist-upgrade']
0m8.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /var/tmp/tmpvsnc8h/tmp/scripts/
0m8.4s INFO: Running scripts post_setup
0m8.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/post_setup_experimental']
0m8.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/post_setup_experimental']
0m8.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/post_setup_forbid_home']
0m8.4s DUMP: 
  Disabling /home
0m8.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/post_setup_forbid_home']
0m8.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/post_setup_squeeze-backports']
0m8.5s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/post_setup_squeeze-backports']
0m8.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', 'clean']
0m8.5s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', 'clean']
0m9.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'dpkg', '--get-selections', '*']
0m9.7s DUMP: 
  apt						install
  base-files					install
  base-passwd					install
  bash						install
  bsdutils					install
  coreutils					install
  dash						install
  debconf						install
  debconf-i18n					install
  debian-archive-keyring				install
  debianutils					install
  diffutils					install
  dpkg						install
  e2fslibs:amd64					install
  e2fsprogs					install
  eatmydata					install
  findutils					install
  gcc-4.7-base:amd64				install
  gcc-4.8-base:amd64				install
  gnupg						install
  gpgv						install
  grep						install
  gzip						install
  hostname					install
  initscripts					install
  insserv						install
  libacl1:amd64					install
  libapt-pkg4.12:amd64				install
  libattr1:amd64					install
  libblkid1:amd64					install
  libbz2-1.0:amd64				install
  libc-bin					install
  libc6:amd64					install
  libcap2:amd64					install
  libcomerr2:amd64				install
  libdb5.1:amd64					install
  libgcc1:amd64					install
  liblocale-gettext-perl				install
  liblzma5:amd64					install
  libmount1					install
  libncurses5:amd64				install
  libpam-modules:amd64				install
  libpam-modules-bin				install
  libpam-runtime					install
  libpam0g:amd64					install
  libpcre3:amd64					install
  libreadline6:amd64				install
  libselinux1:amd64				install
  libsemanage-common				install
  libsemanage1:amd64				install
  libsepol1:amd64					install
  libslang2:amd64					install
  libss2:amd64					install
  libstdc++6:amd64				install
  libtext-charwidth-perl				install
  libtext-iconv-perl				install
  libtext-wrapi18n-perl				install
  libtinfo5:amd64					install
  libusb-0.1-4:amd64				install
  libustr-1.0-1:amd64				install
  libuuid1:amd64					install
  login						install
  lsb-base					install
  mawk						install
  mount						install
  multiarch-support				install
  ncurses-base					install
  ncurses-bin					install
  passwd						install
  perl-base					install
  readline-common					install
  sed						install
  sensible-utils					install
  sysv-rc						install
  sysvinit					install
  sysvinit-utils					install
  tar						install
  tzdata						install
  util-linux					install
  zlib1g:amd64					install
0m9.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'dpkg', '--get-selections', '*']
0m9.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'dpkg-divert', '--list']
0m9.7s DUMP: 
  diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash
  diversion of /bin/sh to /bin/sh.distrib by dash
0m9.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'dpkg-divert', '--list']
0m9.7s INFO: Starting install/purge
0m9.7s INFO: apt-cache does not know about any of the requested packages
0m9.7s INFO: Running scripts pre_test
0m9.7s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/pre_test_root_password']
0m9.7s DUMP: 
  Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully
0m9.7s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/pre_test_root_password']
0m9.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmpvsnc8h']
0m10.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmpvsnc8h']
0m11.0s DEBUG: No broken symlinks as far as we can find.
0m11.0s INFO: Running scripts pre_install
0m11.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/pre_install_database-server']
0m11.1s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/pre_install_database-server']
0m11.1s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/pre_install_exceptions']
0m11.1s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/pre_install_exceptions']
0m11.1s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m11.1s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'tmp/scripts/pre_install_foreign_architecture_i386']
0m11.1s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-cache', 'show', 'libscotchmetis-dev']
0m12.4s DUMP: 
  Package: libscotchmetis-dev
  Source: scotch
  Version: 5.1.12b.dfsg-2
  Installed-Size: 123
  Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
  Architecture: amd64
  Replaces: libmetis-dev
  Depends: libscotch-dev (= 5.1.12b.dfsg-2)
  Conflicts: libmetis-dev, libparmetis-dev
  Description-en: programs and libraries for graph, mesh and hypergraph partitioning
   Scotch/Metis compatility interface, providing a free implementation of the
   Metis system for graph partitioning and sparse matrix reordering.
  Description-md5: a391c720b80b18263009a2efcd3d5429
  Homepage: http://www.labri.fr/perso/pelegrin/scotch/
  Description-md5: a391c720b80b18263009a2efcd3d5429
  Tag: devel::library, role::devel-lib
  Section: libdevel
  Priority: extra
  Filename: pool/main/s/scotch/libscotchmetis-dev_5.1.12b.dfsg-2_amd64.deb
  Size: 30840
  MD5sum: 8c5b4b42cc6fdf68950a7a4b4a0ee0c4
  SHA1: fe78872ce19e8b274db1bda147cf02d4c499d71d
  SHA256: ae5e7ff3a12dc983023de8a79f6d1ec5e07de9adcc54a526aa494dec8a7ee8ed
0m12.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-cache', 'show', 'libscotchmetis-dev']
0m12.4s DEBUG: Starting command: ['dpkg-deb', '-b', '--nocheck', '/var/tmp/tmptqcORU/piuparts-depends-dummy']
0m12.4s DUMP: 
  dpkg-deb: warning: not checking contents of control area
  dpkg-deb: building an unknown package in '/var/tmp/tmptqcORU/piuparts-depends-dummy.deb'.
0m12.4s DEBUG: Command ok: ['dpkg-deb', '-b', '--nocheck', '/var/tmp/tmptqcORU/piuparts-depends-dummy']
0m12.4s DEBUG: Copying /var/tmp/tmptqcORU/piuparts-depends-dummy.deb to /var/tmp/tmpvsnc8h/tmp
0m12.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb']
0m12.4s DUMP: 
  Selecting previously unselected package piuparts-depends-dummy.
  (Reading database ... 6639 files and directories currently installed.)
  Unpacking piuparts-depends-dummy (from tmp/piuparts-depends-dummy.deb) ...
  dpkg: dependency problems prevent configuration of piuparts-depends-dummy:
   piuparts-depends-dummy depends on libscotch-dev (= 5.1.12b.dfsg-2); however:
    Package libscotch-dev is not installed.
  
  dpkg: error processing piuparts-depends-dummy (--install):
   dependency problems - leaving unconfigured
  Errors were encountered while processing:
   piuparts-depends-dummy
0m12.4s DEBUG: Command failed (status=1), but ignoring error: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'dpkg', '-i', 'tmp/piuparts-depends-dummy.deb']
0m12.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', '-yf', 'install']
0m14.3s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  Correcting dependencies... Done
  The following extra packages will be installed:
    adduser libc-dev-bin libc6-dev libgfortran3 libibverbs-dev libibverbs1
    libnuma1 libopenmpi-dev libopenmpi1.3 libquadmath0 libscotch-5.1
    libscotch-dev libtorque2 linux-libc-dev mpi-default-dev openmpi-common
    zlib1g-dev
  Suggested packages:
    perl-modules glibc-doc
  Recommended packages:
    manpages-dev gcc c-compiler
  The following NEW packages will be installed:
    adduser libc-dev-bin libc6-dev libgfortran3 libibverbs-dev libibverbs1
    libnuma1 libopenmpi-dev libopenmpi1.3 libquadmath0 libscotch-5.1
    libscotch-dev libtorque2 linux-libc-dev mpi-default-dev openmpi-common
    zlib1g-dev
  0 upgraded, 17 newly installed, 0 to remove and 0 not upgraded.
  1 not fully installed or removed.
  Need to get 14.5 MB of archives.
  After this operation, 53.8 MB of additional disk space will be used.
  Get:1 http://127.0.0.1/debian/ sid/main libquadmath0 amd64 4.8.1-5 [138 kB]
  Get:2 http://127.0.0.1/debian/ sid/main libgfortran3 amd64 4.8.1-5 [345 kB]
  Get:3 http://127.0.0.1/debian/ sid/main adduser all 3.113+nmu3 [264 kB]
  Get:4 http://127.0.0.1/debian/ sid/main libibverbs1 amd64 1.1.7-1 [35.4 kB]
  Get:5 http://127.0.0.1/debian/ sid/main libnuma1 amd64 2.0.8-3 [34.5 kB]
  Get:6 http://127.0.0.1/debian/ sid/main libtorque2 amd64 2.4.16+dfsg-1 [120 kB]
  Get:7 http://127.0.0.1/debian/ sid/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB]
  Get:8 http://127.0.0.1/debian/ sid/main libscotch-5.1 amd64 5.1.12b.dfsg-2 [808 kB]
  Get:9 http://127.0.0.1/debian/ sid/main openmpi-common all 1.4.5-1 [101 kB]
  Get:10 http://127.0.0.1/debian/ sid/main libibverbs-dev amd64 1.1.7-1 [86.1 kB]
  Get:11 http://127.0.0.1/debian/ sid/main libopenmpi-dev amd64 1.4.5-1 [2778 kB]
  Get:12 http://127.0.0.1/debian/ sid/main mpi-default-dev amd64 1.0.1 [3604 B]
  Get:13 http://127.0.0.1/debian/ sid/main libc-dev-bin amd64 2.17-7 [233 kB]
  Get:14 http://127.0.0.1/debian/ sid/main linux-libc-dev amd64 3.9.8-1 [854 kB]
  Get:15 http://127.0.0.1/debian/ sid/main libc6-dev amd64 2.17-7 [3140 kB]
  Get:16 http://127.0.0.1/debian/ sid/main zlib1g-dev amd64 1:1.2.8.dfsg-1 [217 kB]
  Get:17 http://127.0.0.1/debian/ sid/main libscotch-dev amd64 5.1.12b.dfsg-2 [3885 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 14.5 MB in 0s (36.6 MB/s)
  Selecting previously unselected package libquadmath0:amd64.
  (Reading database ... 6639 files and directories currently installed.)
  Unpacking libquadmath0:amd64 (from .../libquadmath0_4.8.1-5_amd64.deb) ...
  Selecting previously unselected package libgfortran3:amd64.
  Unpacking libgfortran3:amd64 (from .../libgfortran3_4.8.1-5_amd64.deb) ...
  Selecting previously unselected package adduser.
  Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ...
  Selecting previously unselected package libibverbs1.
  Unpacking libibverbs1 (from .../libibverbs1_1.1.7-1_amd64.deb) ...
  Selecting previously unselected package libnuma1.
  Unpacking libnuma1 (from .../libnuma1_2.0.8-3_amd64.deb) ...
  Selecting previously unselected package libtorque2.
  Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1_amd64.deb) ...
  Selecting previously unselected package libopenmpi1.3.
  Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ...
  Selecting previously unselected package libscotch-5.1.
  Unpacking libscotch-5.1 (from .../libscotch-5.1_5.1.12b.dfsg-2_amd64.deb) ...
  Selecting previously unselected package openmpi-common.
  Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ...
  Selecting previously unselected package libibverbs-dev.
  Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.7-1_amd64.deb) ...
  Selecting previously unselected package libopenmpi-dev.
  Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.5-1_amd64.deb) ...
  Selecting previously unselected package mpi-default-dev.
  Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_amd64.deb) ...
  Selecting previously unselected package libc-dev-bin.
  Unpacking libc-dev-bin (from .../libc-dev-bin_2.17-7_amd64.deb) ...
  Selecting previously unselected package linux-libc-dev:amd64.
  Unpacking linux-libc-dev:amd64 (from .../linux-libc-dev_3.9.8-1_amd64.deb) ...
  Selecting previously unselected package libc6-dev:amd64.
  Unpacking libc6-dev:amd64 (from .../libc6-dev_2.17-7_amd64.deb) ...
  Selecting previously unselected package zlib1g-dev:amd64.
  Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.8.dfsg-1_amd64.deb) ...
  Selecting previously unselected package libscotch-dev.
  Unpacking libscotch-dev (from .../libscotch-dev_5.1.12b.dfsg-2_amd64.deb) ...
  Setting up libquadmath0:amd64 (4.8.1-5) ...
  Setting up libgfortran3:amd64 (4.8.1-5) ...
  Setting up adduser (3.113+nmu3) ...
  Setting up libibverbs1 (1.1.7-1) ...
  Setting up libnuma1 (2.0.8-3) ...
  Setting up libtorque2 (2.4.16+dfsg-1) ...
  Setting up libopenmpi1.3 (1.4.5-1) ...
  Setting up libscotch-5.1 (5.1.12b.dfsg-2) ...
  Setting up openmpi-common (1.4.5-1) ...
  Setting up libibverbs-dev (1.1.7-1) ...
  Setting up libopenmpi-dev (1.4.5-1) ...
  update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
  Setting up mpi-default-dev (1.0.1) ...
  Setting up libc-dev-bin (2.17-7) ...
  Setting up linux-libc-dev:amd64 (3.9.8-1) ...
  Setting up libc6-dev:amd64 (2.17-7) ...
  Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1) ...
  Setting up libscotch-dev (5.1.12b.dfsg-2) ...
  Setting up piuparts-depends-dummy (0.invalid.0) ...
  Processing triggers for libc-bin ...
0m14.3s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', '-yf', 'install']
0m14.3s INFO: Installation of ['tmp/piuparts-depends-dummy.deb'] ok
0m14.3s DEBUG: Removing /var/tmp/tmpvsnc8h/tmp/piuparts-depends-dummy.deb
0m14.3s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m14.4s DUMP: 
  (Reading database ... 8945 files and directories currently installed.)
  Removing piuparts-depends-dummy ...
0m14.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'dpkg', '--purge', 'piuparts-depends-dummy']
0m14.4s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', 'clean']
0m14.4s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', 'clean']
0m15.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmpvsnc8h']
0m16.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmpvsnc8h']
0m17.5s DEBUG: No broken symlinks as far as we can find.
0m17.5s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-cache', 'policy']
0m19.0s DUMP: 
  Package files:
   100 /var/lib/dpkg/status
       release a=now
   500 http://127.0.0.1/debian/ sid/non-free Translation-en
   500 http://127.0.0.1/debian/ sid/main Translation-en
   500 http://127.0.0.1/debian/ sid/contrib Translation-en
   500 http://127.0.0.1/debian/ sid/non-free amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=non-free
       origin 127.0.0.1
   500 http://127.0.0.1/debian/ sid/contrib amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=contrib
       origin 127.0.0.1
   500 http://127.0.0.1/debian/ sid/main amd64 Packages
       release o=Debian,a=unstable,n=sid,l=Debian,c=main
       origin 127.0.0.1
  Pinned packages:
0m19.0s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-cache', 'policy']
0m19.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-cache', 'policy', 'libscotchmetis-dev']
0m19.0s DUMP: 
  libscotchmetis-dev:
    Installed: (none)
    Candidate: 5.1.12b.dfsg-2
    Version table:
       5.1.12b.dfsg-2 0
          500 http://127.0.0.1/debian/ sid/main amd64 Packages
0m19.0s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-cache', 'policy', 'libscotchmetis-dev']
0m19.0s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', '-y', 'install', 'libscotchmetis-dev=5.1.12b.dfsg-2']
0m19.5s DUMP: 
  Reading package lists...
  Building dependency tree...
  Reading state information...
  The following NEW packages will be installed:
    libscotchmetis-dev
  0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
  Need to get 30.8 kB of archives.
  After this operation, 126 kB of additional disk space will be used.
  Get:1 http://127.0.0.1/debian/ sid/main libscotchmetis-dev amd64 5.1.12b.dfsg-2 [30.8 kB]
  debconf: delaying package configuration, since apt-utils is not installed
  Fetched 30.8 kB in 0s (1311 kB/s)
  Selecting previously unselected package libscotchmetis-dev.
  (Reading database ... 8945 files and directories currently installed.)
  Unpacking libscotchmetis-dev (from .../libscotchmetis-dev_5.1.12b.dfsg-2_amd64.deb) ...
  Setting up libscotchmetis-dev (5.1.12b.dfsg-2) ...
0m19.5s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'apt-get', '-y', 'install', 'libscotchmetis-dev=5.1.12b.dfsg-2']
0m19.5s INFO: Running scripts post_install
0m19.5s DEBUG: Starting command: ['lsof', '-w', '+D', '/var/tmp/tmpvsnc8h']
0m20.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/var/tmp/tmpvsnc8h']
0m21.3s ERROR: FAIL: Broken symlinks:
  /usr/lib/metis-int64/libmetis.a -> libscotchmetis.a
  /usr/lib/metis-int64/libmetis.so -> libscotchmetis.so
  /usr/lib/metis-int32/libmetis.a -> libscotchmetis.a
  /usr/lib/metis-int32/libmetis.so -> libscotchmetis.so
  /usr/lib/metis-long/libmetis.a -> libscotchmetis.a
  /usr/lib/metis-long/libmetis.so -> libscotchmetis.so
0m21.8s DEBUG: Starting command: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'umount', '/proc']
0m21.8s DEBUG: Command ok: ['chroot', '/var/tmp/tmpvsnc8h', 'eatmydata', 'umount', '/proc']
0m21.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/var/tmp/tmpvsnc8h']
0m21.9s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/var/tmp/tmpvsnc8h']
0m21.9s DEBUG: Removed directory tree at /var/tmp/tmpvsnc8h
0m21.9s ERROR: piuparts run ends.

ret=1
End: 2013-07-05 21:54:07 EST



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