Bug#1026675: jabref: FTBFS: make: *** [debian/rules:6: binary] Error 25

Lucas Nussbaum lucas at debian.org
Tue Dec 20 17:38:28 GMT 2022 

Source: jabref
Version: 3.8.2+ds-16
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-20221220 ftbfs-bookworm

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.


Relevant part (hopefully):
>  debian/rules binary
> dh binary --buildsystem=gradle
>    dh_update_autotools_config -O--buildsystem=gradle
>    dh_autoreconf -O--buildsystem=gradle
>    dh_auto_configure -O--buildsystem=gradle
>    dh_auto_build -O--buildsystem=gradle
> 	mkdir -p .gradle/init.d
> 	cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/
> 	gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=jabref -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar
> OpenJDK 64-Bit Server VM warning: Ignoring option --illegal-access=permit; support was removed in 17.0
> Initialized native services in: /<<PKGBUILDDIR>>/.gradle/native
> To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html.
> Starting process 'Gradle build daemon'. Working directory: /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-17-openjdk-amd64/bin/java -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar --add-opens java.base/java.lang=ALL-UNNAMED -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1
> Successfully started process 'Gradle build daemon'
> An attempt to start the daemon took 0.91 secs.
> The client will now receive all logging from the daemon (pid: 1123889). The daemon log file: /<<PKGBUILDDIR>>/.gradle/daemon/4.4.1/daemon-1123889.out.log
> Daemon will be stopped at the end of the build stopping after processing
> Closing daemon's stdin at end of input.
> The daemon will no longer process any standard input.
> Using 8 worker leases.
> Creating new cache for fileHashes, path /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess at 2330d380
> Creating new cache for resourceHashesCache, path /<<PKGBUILDDIR>>/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess at 2330d380
> Creating new cache for fileHashes, path /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess at 688dee70
> Starting Build
> Compiling initialization script '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' using SubsetScriptTransformer.
> Creating new cache for metadata-1.1/results, path /<<PKGBUILDDIR>>/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess at 19a51d7b
> Compiling initialization script '/<<PKGBUILDDIR>>/.gradle/init.d/init.gradle' using BuildScriptTransformer.
> Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using SubsetScriptTransformer.
> Compiling settings file '/<<PKGBUILDDIR>>/settings.gradle' using BuildScriptTransformer.
> Settings evaluated using settings file '/<<PKGBUILDDIR>>/settings.gradle'.
> Projects loaded. Root project using build file '/<<PKGBUILDDIR>>/build.gradle'.
> Included projects: [root project 'JabRef']
> 	Keep-alive timer started
> 	Adding Debian repository to project 'JabRef'
> Parallel execution is an incubating feature.
> Evaluating root project 'JabRef' using build file '/<<PKGBUILDDIR>>/build.gradle'.
> Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using SubsetScriptTransformer.
> Compiling build file '/<<PKGBUILDDIR>>/build.gradle' using BuildScriptTransformer.
> Compiling script '/<<PKGBUILDDIR>>/xjc.gradle' using SubsetScriptTransformer.
> Compiling script '/<<PKGBUILDDIR>>/xjc.gradle' using BuildScriptTransformer.
> 	Adding Maven pom generation to project 'JabRef'
> 	Linking the generated javadoc to the system JDK API documentation
> All projects evaluated.
> Selected primary task 'jar' from project :
> Creating new cache for annotation-processors, path /<<PKGBUILDDIR>>/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess at 400dda1
> Tasks to be executed: [task ':generateBstGrammarSource', task ':generateSearchGrammarSource', task ':generateSource', task ':xjc', task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar']
> Creating new cache for resourceHashesCache, path /<<PKGBUILDDIR>>/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess at 688dee70
> Creating new cache for taskHistory, path /<<PKGBUILDDIR>>/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess at 2e83aa19
> Creating new cache for outputFiles, path /<<PKGBUILDDIR>>/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess at 3b779ca3
> :generateBstGrammarSource (Thread[Task worker for ':' Thread 3,5,main]) started.
> :generateBstGrammarSource
> Putting task artifact state for task ':generateBstGrammarSource' into context took 0.003 secs.
> 	Loading the Maven rules...
> 	Replacing org.antlr:antlr:jar:3.5.2  ->  org.antlr:antlr:jar:3.5.2
> :generateBstGrammarSource FAILED
> :generateBstGrammarSource (Thread[Task worker for ':' Thread 3,5,main]) completed. Took 0.063 secs.
> 
> FAILURE: Build failed with an exception.
> 
> * What went wrong:
> Could not resolve all files for configuration ':antlr3'.
> > Could not find org.antlr:antlr:3.5.2.
>   Searched in the following locations:
>       file:/usr/share/maven-repo/org/antlr/antlr/3.5.2/antlr-3.5.2.pom
>       file:/usr/share/maven-repo/org/antlr/antlr/3.5.2/antlr-3.5.2.jar
>   Required by:
>       project :
> 
> * Try:
> Run with --debug option to get more log output. Run with --scan to get full insights.
> 
> * Exception is:
> org.gradle.api.internal.artifacts.ivyservice.DefaultLenientConfiguration$ArtifactResolveException: Could not resolve all files for configuration ':antlr3'.
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.rethrowFailure(DefaultConfiguration.java:918)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.access$1600(DefaultConfiguration.java:116)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getFiles(DefaultConfiguration.java:892)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.getFiles(DefaultConfiguration.java:404)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration_Decorated.getFiles(Unknown Source)
> 	at org.gradle.api.internal.file.AbstractFileCollection.iterator(AbstractFileCollection.java:68)
> 	at org.gradle.api.internal.changedetection.state.AbstractFileCollectionSnapshotter$FileCollectionVisitorImpl.visitCollection(AbstractFileCollectionSnapshotter.java:70)
> 	at org.gradle.api.internal.file.AbstractFileCollection.visitRootElements(AbstractFileCollection.java:234)
> 	at org.gradle.api.internal.file.CompositeFileCollection.visitRootElements(CompositeFileCollection.java:185)
> 	at org.gradle.api.internal.changedetection.state.AbstractFileCollectionSnapshotter.snapshot(AbstractFileCollectionSnapshotter.java:53)
> 	at org.gradle.api.internal.changedetection.state.DefaultClasspathSnapshotter.snapshot(DefaultClasspathSnapshotter.java:42)
> 	at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.snapshotTaskFiles(CacheBackedTaskHistoryRepository.java:331)
> 	at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.createExecution(CacheBackedTaskHistoryRepository.java:154)
> 	at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository.access$100(CacheBackedTaskHistoryRepository.java:61)
> 	at org.gradle.api.internal.changedetection.state.CacheBackedTaskHistoryRepository$1.getCurrentExecution(CacheBackedTaskHistoryRepository.java:114)
> 	at org.gradle.api.internal.changedetection.changes.DefaultTaskArtifactStateRepository$TaskArtifactStateImpl.getStates(DefaultTaskArtifactStateRepository.java:201)
> 	at org.gradle.api.internal.changedetection.changes.DefaultTaskArtifactStateRepository$TaskArtifactStateImpl.isUpToDate(DefaultTaskArtifactStateRepository.java:86)
> 	at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:53)
> 	at org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54)
> 	at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60)
> 	at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97)
> 	at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87)
> 	at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52)
> 	at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52)
> 	at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54)
> 	at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43)
> 	at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34)
> 	at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248)
> 	at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> 	at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> 	at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> 	at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> 	at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241)
> 	at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230)
> 	at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123)
> 	at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79)
> 	at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104)
> 	at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98)
> 	at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626)
> 	at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581)
> 	at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98)
> 	at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)
> 	at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)
> 	at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)
> Caused by: org.gradle.internal.resolve.ModuleVersionNotFoundException: Could not find org.antlr:antlr:3.5.2.
> Searched in the following locations:
>     file:/usr/share/maven-repo/org/antlr/antlr/3.5.2/antlr-3.5.2.pom
>     file:/usr/share/maven-repo/org/antlr/antlr/3.5.2/antlr-3.5.2.jar
> Required by:
>     project :
> 	at org.gradle.internal.resolve.result.DefaultBuildableComponentResolveResult.notFound(DefaultBuildableComponentResolveResult.java:38)
> 	at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolveModule(RepositoryChainComponentMetaDataResolver.java:108)
> 	at org.gradle.api.internal.artifacts.ivyservice.ivyresolve.RepositoryChainComponentMetaDataResolver.resolve(RepositoryChainComponentMetaDataResolver.java:63)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.ComponentResolversChain$ComponentMetaDataResolverChain.resolve(ComponentResolversChain.java:93)
> 	at org.gradle.api.internal.artifacts.ivyservice.clientmodule.ClientModuleResolver.resolve(ClientModuleResolver.java:48)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.ComponentState.resolve(ComponentState.java:157)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.ComponentState.getMetaData(ComponentState.java:168)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.EdgeState.calculateTargetConfigurations(EdgeState.java:134)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.EdgeState.attachToTargetConfigurations(EdgeState.java:105)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.attachToTargetRevisionsSerially(DependencyGraphBuilder.java:239)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.resolveEdges(DependencyGraphBuilder.java:229)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.traverseGraph(DependencyGraphBuilder.java:143)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.graph.builder.DependencyGraphBuilder.resolve(DependencyGraphBuilder.java:109)
> 	at org.gradle.api.internal.artifacts.ivyservice.resolveengine.DefaultArtifactDependencyResolver.resolve(DefaultArtifactDependencyResolver.java:90)
> 	at org.gradle.api.internal.artifacts.ivyservice.DefaultConfigurationResolver.resolveGraph(DefaultConfigurationResolver.java:146)
> 	at org.gradle.api.internal.artifacts.ivyservice.ShortCircuitEmptyConfigurationResolver.resolveGraph(ShortCircuitEmptyConfigurationResolver.java:73)
> 	at org.gradle.api.internal.artifacts.ivyservice.ErrorHandlingConfigurationResolver.resolveGraph(ErrorHandlingConfigurationResolver.java:66)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$4.run(DefaultConfiguration.java:483)
> 	at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)
> 	at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)
> 	at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)
> 	at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveGraphIfRequired(DefaultConfiguration.java:474)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.resolveToStateOrLater(DefaultConfiguration.java:459)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration.access$1700(DefaultConfiguration.java:116)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getSelectedArtifacts(DefaultConfiguration.java:901)
> 	at org.gradle.api.internal.artifacts.configurations.DefaultConfiguration$ConfigurationFileCollection.getFiles(DefaultConfiguration.java:889)
> 	... 41 more
> 
> 
> * Get more help at https://help.gradle.org
> 
> BUILD FAILED in 4s
> 1 actionable task: 1 executed
> dh_auto_build: error: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=jabref -Dfile.encoding=UTF-8 --parallel --max-workers=8 jar returned exit code 1
> make: *** [debian/rules:6: binary] Error 25


The full build log is available from:
http://qa-logs.debian.net/2022/12/20/jabref_3.8.2+ds-16_unstable.log

All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20221220;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20221220&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.

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