[Pkg-openmpi-maintainers] transition: openmpi
Sebastiaan Couwenberg
sebastic at xs4all.nl
Thu Sep 8 11:07:34 UTC 2016
I've done a round of rebuilds to assess the impact of this transition.
The results are summarized below. Several package suffer from
uninstallable build dependencies by having libopenmpi1.10 pulled in by
dependencies that failed to rebuild.
fftw (2.1.5-4) FTBFS due to . being removed from @INC in recent perl.
The gmsh (2.13.2+dfsg1-1) dependencies could initially not be installed
because hdf5 was still pulling in libopenmpi1.10 which conflicts with
libopenmpi2. The ben dependency levels did not reflect that. With the
rebuilt hdf5 the gmsh rebuild succeeded.
The molds (0.3.1-1) had a similar issue due to boost pulling in the old
libopenmpi1.10. With the rebuilt boost the molds rebuild succeeded too.
p4est (1.1-2) FTBFS due to test failures.
tachyon (0.99~b6+dsx-5) FTBFS due to: undefined reference to symbol
'XNextEvent'
abyss (1.9.0-1) FTBFS due to: db-csv.cc:23:9: error: cannot convert
'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in return
gromacs (2016-2) FTBFS due to test failures.
scalapack (1.8.0-12.3) FTBFS due to undefined references to MPI symbols.
Bugreports for the above will be filed soon.
Transition: openmpi
libopenmpi1.10 (1.10.3-3) -> libopenmpi2 (2.0.1-3)
The status of the most recent rebuilds is as follows.
aces3 (sid only) (3.0.8-5) FTBFS (#831164)
arpack (3.4.0-1) OK
blacs-mpi (1.1-37) OK
boost1.58 (1.58.0+dfsg-5.1) FTBFS (#811651)
boost1.61 (1.61.0+dfsg-2.1) OK
cctools (sid only) (4.0-1) OK
dune-grid (2.4.1-1) OK
fftw (2.1.5-4) FTBFS
fftw3 (3.3.4-2) OK
gerris (20131206+dfsg-9) OK
gmsh (2.13.2+dfsg1-1) OK
gpaw (1.1.0-1) OK
hdf5 (1.8.16+docs-8) OK
hpcc (1.4.3-1) OK
hyphy (2.2.6+dfsg-5) OK
hypre (2.8.0b-3) OK
molds (0.3.1-1) OK
mpi4py (2.0.0-2) OK
mpqc (sid only) (2.3.1-16.1) FTBFS (#812036)
mpqc3 (0.0~git20160216-3) OK
mrbayes (3.2.6+dfsg-1) OK
mrmpi (1.0~20140404-1) OK
octave-mpi (1.2.0-2) OK
open-coarrays (1.7.0-1) OK
otf (1.12.5+dfsg-2) OK
p4est (1.1-2) FTBFS
palabos (1.5~r1+repack1-2) OK
parmetis (4.0.3-4) OK
pnetcdf (1.7.0-1) OK
ray (2.3.1-4) OK
regina-normal (4.96-4) OK
rmpi (0.6-6-1) OK
ruby-mpi (0.3.0-1) OK
scotch (5.1.12b.dfsg-2) OK
spooles (2.2-12) OK
tachyon (0.99~b6+dsx-5) FTBFS
valgrind (1:3.12.0~svn20160714-1) OK
abyss (1.9.0-1) FTBFS
adios (1.9.0-12) BD-UNINST
ampliconnoise (1.29-5) OK
code-saturne (4.2.1+repack-1) OK
elkcode (sid only) (2.3.22-1) FTBFS (#825934)
ffindex (0.9.9.7-1) OK
gfsview (20121130+dfsg-2) OK
gromacs (2016-2) FTBFS
lammps (0~20151117.gite3c4db7-3) OK
libghemical (sid only) (3.0.0-4.1) BD-UNINST
libgpiv (0.6.1-4.3) OK
mathgl (2.3.4-1) FTBFS (#835680)
meep-mpi-default (1.3-3) OK
meep-openmpi (1.3-3) OK
mpb (1.5-2) OK
murasaki (1.68.6-6) OK
music (sid only) (1.0.7-1.2) FTBFS (#811907)
netpipe (3.7.2-7.4) OK
ns3 (3.25+dfsg2-3) OK
openmx (3.7.6-1) OK
paraview (5.1.2+dfsg1-1) BD-UNINST
phyml (3:3.2.0+dfsg-2) OK
prime-phylo (1.0.11-4) OK
python-escript (4.2.0.1-4) OK
relion (1.4+dfsg-2) OK
scalapack (1.8.0-12.3) FTBFS
silo-llnl (4.10.2-6) OK
starpu (1.1.4+dfsg-6) OK
starpu-contrib (1.1.4+dfsg-6) OK
tessa (sid only) (0.3.1-6.1) FTBFS (#817690)
tree-puzzle (5.2-8) OK
vtk6 (6.3.0+dfsg1-1) BD-UNINST
yorick (2.2.04+dfsg1-6) OK
zalign (0.9.1-2) OK
elpa (2016.05.001-1) BD-UNINST
esys-particle (2.3.4+dfsg1-2) BD-UNINST
eztrace (1.1-3-1) OK
freefoam (0.1.0+dfsg+1-4) BD-UNINST
gyoto (1.0.2-3) OK
ifrit (4.1.2-5) BD-UNINST
liggghts (3.4.0+repack1-2) BD-UNINST
mumps (4.10.0.dfsg-4) BD-UNINST
nwchem (sid only) (6.6+r27746-2) BD-UNINST
cp2k (3.0.0-1) BD-UNINST
espresso (5.4.0+dfsg-1) BD-UNINST
freefem++ (sid only) (3.47+dfsg1-1) BD-UNINST
petsc (3.7.3.dfsg1-2) BD-UNINST
rheolef (6.7-1) BD-UNINST
trilinos (12.6.4-1) BD-UNINST
aster (11.5.0+dfsg2-4) BD-UNINST
petsc4py (3.7.0-2) BD-UNINST
slepc (3.7.2+dfsg1-2) BD-UNINST
deal.ii (8.4.2-1) BD-UNINST
getdp (2.9.2+dfsg1-1) BD-UNINST
slepc4py (3.7.0-2) BD-UNINST
dolfin (2016.1.0-2) BD-UNINST
Kind Regards,
Bas
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