[SCM] Packaging Genome::Model::Tools::Music in Debian branch, master, updated. 2ab849e9e1aca75566077783cda6aebf5e6c0a76

[Olivier Sallou]

The following commit has been merged in the master branch:
commit 0f63b9bacb0f61c5295b62e092917f9b4f205201
Author: Olivier Sallou <olivier.sallou at debian.org>
Date:   Wed May 1 10:03:48 2013 +0200

    add patch to fix pod2man errorsé

diff --git a/debian/patches/01-fixpod2man b/debian/patches/01-fixpod2man
new file mode 100644
index 0000000..bcf5913
--- /dev/null
+++ b/debian/patches/01-fixpod2man
@@ -0,0 +1,41 @@
+--- a/lib/Genome/Model/Tools/Music/Bmr/CalcCovgHelper.pm
++++ b/lib/Genome/Model/Tools/Music/Bmr/CalcCovgHelper.pm
+@@ -60,7 +60,6 @@
+ up these base-counts across all ROIs of each gene in the sample, but covered bases that lie
+ within overlapping ROIs are not counted more than once towards these total counts.
+ 
+-=back
+ HELP
+ }
+ 
+--- a/lib/Genome/Model/Tools/Music/ClinicalCorrelation.pm
++++ b/lib/Genome/Model/Tools/Music/ClinicalCorrelation.pm
+@@ -135,7 +135,7 @@
+ 
+ =item * Columns must be ordered as such:
+ 
+-=item [ analysis_type    clinical_data_trait_name    variant/gene_name   covariates  memo ]
++=item * [ analysis_type    clinical_data_trait_name    variant/gene_name   covariates  memo ]
+ 
+ =item * The 'analysis_type' column must contain either "Q", indicating a quantative trait, or "B", indicating a binary trait will be examined.
+ 
+--- a/lib/Genome/Model/Tools/Music/PathScan.pm
++++ b/lib/Genome/Model/Tools/Music/PathScan.pm
+@@ -115,7 +115,6 @@
+ 
+ =back
+ 
+-=back
+ EOS
+   );
+ }
+--- a/lib/Genome/Model/Tools/Music/Smg.pm
++++ b/lib/Genome/Model/Tools/Music/Smg.pm
+@@ -82,7 +82,6 @@
+ 
+ =back
+ 
+-=back
+ EOS
+   );
+ }
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..5148245
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+01-fixpod2man

-- 
Packaging Genome::Model::Tools::Music in Debian