[Reproducible-builds] Bug#813982: python-mne: FTBFS: IndexError: an index can only have a single ellipsis ('...')

[Chris Lamb]

Source: python-mne
Version: 0.10.1+dfsg-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds at lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds at lists.alioth.debian.org

Dear Maintainer,

python-mne fails to build from source in unstable/amd64:

  [..]

  ======================================================================
  ERROR: Test PSD estimation on epochs
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
      self.test(*self.arg)
    File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line 147, in skipper_func
      return f(*args, **kwargs)
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/tests/test_psd.py", line 95, in test_psd_epochs
      n_fft=n_fft, picks=picks)
    File "<string>", line 2, in compute_epochs_psd
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py", line 551, in verbose
      return function(*args, **kwargs)
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/psd.py", line 171, in compute_epochs_psd
      data = epochs.get_data()[:, picks][..., time_mask]
  IndexError: an index can only have a single ellipsis ('...')
  -------------------- >> begin captured stdout << ---------------------
  Opening raw data file /home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/io/tests/data/test_raw.fif...
      Read a total of 3 projection items:
          PCA-v1 (1 x 102)  idle
          PCA-v2 (1 x 102)  idle
          PCA-v3 (1 x 102)  idle
  Current compensation grade : 0
      Range : 25800 ... 40199 =     42.956 ...    66.930 secs
  Ready.
  Adding average EEG reference projection.
  1 projection items deactivated
  2 matching events found
  Reading 2671 ... 3271  =      4.447 ...     5.446 secs...
  [done]
  Applying baseline correction ... (mode: mean)
  Reading 4350 ... 4950  =      7.243 ...     8.242 secs...
  [done]
  Applying baseline correction ... (mode: mean)
  0 bad epochs dropped
  2 matching events found
  Reading 2370 ... 3572  =      3.946 ...     5.947 secs...
  [done]
  Applying baseline correction ... (mode: mean)
  Reading 4049 ... 5251  =      6.741 ...     8.743 secs...
  [done]
  Applying baseline correction ... (mode: mean)
  0 bad epochs dropped
  
  --------------------- >> end captured stdout << ----------------------
  
  ======================================================================
  ERROR: Test plotting epochs psd (+topomap)
  ----------------------------------------------------------------------
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/nose/case.py", line 197, in runTest
      self.test(*self.arg)
    File "/usr/lib/python2.7/dist-packages/numpy/testing/decorators.py", line 147, in skipper_func
      return f(*args, **kwargs)
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/viz/tests/test_epochs.py", line 164, in test_plot_psd_epochs
      epochs.plot_psd()
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/epochs.py", line 868, in plot_psd
      verbose=None, show=show)
    File "<string>", line 2, in plot_epochs_psd
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py", line 551, in verbose
      return function(*args, **kwargs)
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/viz/epochs.py", line 495, in plot_epochs_psd
      n_jobs=n_jobs)
    File "<string>", line 2, in compute_epochs_psd
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/utils.py", line 551, in verbose
      return function(*args, **kwargs)
    File "/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/time_frequency/psd.py", line 171, in compute_epochs_psd
      data = epochs.get_data()[:, picks][..., time_mask]
  IndexError: an index can only have a single ellipsis ('...')
  -------------------- >> begin captured stdout << ---------------------
  Opening raw data file /home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg/mne/io/tests/data/test_raw.fif...
      Read a total of 3 projection items:
          PCA-v1 (1 x 102)  idle
          PCA-v2 (1 x 102)  idle
          PCA-v3 (1 x 102)  idle
  Current compensation grade : 0
      Range : 25800 ... 40199 =     42.956 ...    66.930 secs
  Ready.
  Adding average EEG reference projection.
  1 projection items deactivated
  1 matching events found
  Created an SSP operator (subspace dimension = 3)
  4 projection items activated
  Reading 2911 ... 3572  =      4.847 ...     5.947 secs...
  [done]
  Applying baseline correction ... (mode: mean)
  0 bad epochs dropped
  
  --------------------- >> end captured stdout << ----------------------
  
  ----------------------------------------------------------------------
  Ran 549 tests in 306.354s
  
  FAILED (SKIP=193, errors=2)
  debian/rules:19: recipe for target 'override_dh_auto_test' failed
  make[1]: *** [override_dh_auto_test] Error 1
  make[1]: Leaving directory '/home/lamby/temp/cdt.20160207103006.4o4ykTzhLo/python-mne-0.10.1+dfsg'
  debian/rules:7: recipe for target 'build' failed
  make: *** [build] Error 2

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      lamby at debian.org / chris-lamb.co.uk
       `-
-------------- next part --------------
A non-text attachment was scrubbed...
Name: python-mne.0.10.1+dfsg-1.unstable.amd64.log.txt.gz
Type: application/octet-stream
Size: 7194 bytes
Desc: not available
URL: <http://lists.alioth.debian.org/pipermail/reproducible-builds/attachments/20160207/f9a34727/attachment.obj>