[med-svn] r352 - in trunk/packages/exonerate/trunk: . debian
smoe-guest at alioth.debian.org
smoe-guest at alioth.debian.org
Mon Jul 2 11:24:15 UTC 2007
Author: smoe-guest
Date: 2007-07-02 11:24:14 +0000 (Mon, 02 Jul 2007)
New Revision: 352
Added:
trunk/packages/exonerate/trunk/debian/
trunk/packages/exonerate/trunk/debian/README.Debian
trunk/packages/exonerate/trunk/debian/changelog
trunk/packages/exonerate/trunk/debian/compat
trunk/packages/exonerate/trunk/debian/control
trunk/packages/exonerate/trunk/debian/copyright
trunk/packages/exonerate/trunk/debian/dirs
trunk/packages/exonerate/trunk/debian/docs
trunk/packages/exonerate/trunk/debian/exonerate.doc-base.EX
trunk/packages/exonerate/trunk/debian/exonerate.manpages
trunk/packages/exonerate/trunk/debian/rules
trunk/packages/exonerate/trunk/debian/watch
Log:
[svn-inject] Applying Debian modifications to trunk
Property changes on: trunk/packages/exonerate/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
+ 1
Added: trunk/packages/exonerate/trunk/debian/README.Debian
===================================================================
--- trunk/packages/exonerate/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/exonerate/trunk/debian/README.Debian 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,8 @@
+exonerate for Debian
+--------------------
+
+Well, this is a very first attempt to package Exonerate. It is not fully
+up to the standards of Debian, yet, some man pages are still missing, but
+otherwise it should be just fine.
+
+ -- Steffen Moeller <steffen_moeller at gmx.de> Mon, 02 Jul 2007 11:42:38 +0200
Added: trunk/packages/exonerate/trunk/debian/changelog
===================================================================
--- trunk/packages/exonerate/trunk/debian/changelog (rev 0)
+++ trunk/packages/exonerate/trunk/debian/changelog 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,6 @@
+exonerate (1.4.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #431404).
+
+ -- Steffen Moeller <steffen_moeller at gmx.de> Mon, 02 Jul 2007 11:42:38 +0200
+
Added: trunk/packages/exonerate/trunk/debian/compat
===================================================================
--- trunk/packages/exonerate/trunk/debian/compat (rev 0)
+++ trunk/packages/exonerate/trunk/debian/compat 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1 @@
+5
Added: trunk/packages/exonerate/trunk/debian/control
===================================================================
--- trunk/packages/exonerate/trunk/debian/control (rev 0)
+++ trunk/packages/exonerate/trunk/debian/control 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,20 @@
+Source: exonerate
+Section: science
+Priority: extra
+Maintainer: Steffen Moeller <steffen_moeller at gmx.de>
+Build-Depends: debhelper (>= 5), autotools-dev, libglib1.2-dev
+Standards-Version: 3.7.2
+
+Package: exonerate
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Suggests: wise
+Description: generic tool for pairwise sequence comparison
+ Much of the functionality of the Wise dynamic programming
+ suite was reimplemented in C for better efficiency.
+ Exonerate is an intrinsic component of the building of
+ the ENSEMBL genome databases, providing similarity
+ scores between RNA and DNA sequences and thus determining
+ splice variants and coding sequences in general.
+ .
+ Homepage: http://www.ebi.ac.uk/~guy/exonerate/
Added: trunk/packages/exonerate/trunk/debian/copyright
===================================================================
--- trunk/packages/exonerate/trunk/debian/copyright (rev 0)
+++ trunk/packages/exonerate/trunk/debian/copyright 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,34 @@
+This package was debianized by Steffen Moeller <steffen_moeller at gmx.de> on
+Mon, 02 Jul 2007 11:42:38 +0200.
+
+It was downloaded from http://www.ebi.ac.uk/~guy/exonerate/
+
+Upstream Author(s):
+
+ Guy St. C. Slater <guy at ebi.ac.uk>
+
+Copyright:
+
+ Copyright (C) 2000-2006 Guy St. C. Slater
+
+License:
+
+ This package is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2 of the License, or (at your option) any later version.
+
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public
+ License along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+On Debian systems, the complete text of the GNU Lesser General
+Public License can be found in `/usr/share/common-licenses/LGPL'.
+
+The Debian packaging is (C) 2007, Steffen Moeller <steffen_moeller at gmx.de> and
+is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
Added: trunk/packages/exonerate/trunk/debian/dirs
===================================================================
--- trunk/packages/exonerate/trunk/debian/dirs (rev 0)
+++ trunk/packages/exonerate/trunk/debian/dirs 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1 @@
+usr/bin
Added: trunk/packages/exonerate/trunk/debian/docs
===================================================================
--- trunk/packages/exonerate/trunk/debian/docs (rev 0)
+++ trunk/packages/exonerate/trunk/debian/docs 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,3 @@
+NEWS
+README
+TODO
Added: trunk/packages/exonerate/trunk/debian/exonerate.doc-base.EX
===================================================================
--- trunk/packages/exonerate/trunk/debian/exonerate.doc-base.EX (rev 0)
+++ trunk/packages/exonerate/trunk/debian/exonerate.doc-base.EX 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,22 @@
+Document: exonerate
+Title: Debian exonerate Manual
+Author: <insert document author here>
+Abstract: This manual describes what exonerate is
+ and how it can be used to
+ manage online manuals on Debian systems.
+Section: unknown
+
+Format: debiandoc-sgml
+Files: /usr/share/doc/exonerate/exonerate.sgml.gz
+
+Format: postscript
+Files: /usr/share/doc/exonerate/exonerate.ps.gz
+
+Format: text
+Files: /usr/share/doc/exonerate/exonerate.text.gz
+
+Format: HTML
+Index: /usr/share/doc/exonerate/html/index.html
+Files: /usr/share/doc/exonerate/html/*.html
+
+
Added: trunk/packages/exonerate/trunk/debian/exonerate.manpages
===================================================================
--- trunk/packages/exonerate/trunk/debian/exonerate.manpages (rev 0)
+++ trunk/packages/exonerate/trunk/debian/exonerate.manpages 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,3 @@
+doc/man/man1/exonerate.1
+doc/man/man1/ipcress.1
+
Added: trunk/packages/exonerate/trunk/debian/rules
===================================================================
--- trunk/packages/exonerate/trunk/debian/rules (rev 0)
+++ trunk/packages/exonerate/trunk/debian/rules 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,109 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+
+# These are used for cross-compiling and for saving the configure script
+# from having to guess our platform (since we know it already)
+#DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+#DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+
+
+CFLAGS = -Wall -g
+
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+ CFLAGS += -O0
+else
+ CFLAGS += -O2
+endif
+
+config.status: configure
+ dh_testdir
+ # Add here commands to configure the package.
+ifneq "$(wildcard /usr/share/misc/config.sub)" ""
+ cp -f /usr/share/misc/config.sub config.sub
+endif
+ifneq "$(wildcard /usr/share/misc/config.guess)" ""
+ cp -f /usr/share/misc/config.guess config.guess
+endif
+ ./configure --host="$(DEB_HOST_GNU_TYPE)" --build="$(DEB_BUILD_GNU_TYPE)" --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info --disable-glib2 CFLAGS="$(CFLAGS)"
+ #./configure --host="$(DEB_HOST_GNU_TYPE)" --build="$(DEB_BUILD_GNU_TYPE)" --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info CFLAGS="$(CFLAGS)" LDFLAGS="-Wl,-z,defs"
+
+
+build: build-stamp
+
+build-stamp: config.status
+ dh_testdir
+
+ # Add here commands to compile the package.
+ $(MAKE)
+ #docbook-to-man debian/exonerate.sgml > exonerate.1
+
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp
+
+ # Add here commands to clean up after the build process.
+ -$(MAKE) distclean
+ rm -f config.sub config.guess
+ rm -rf codegen
+
+ dh_clean
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_clean -k
+ dh_installdirs
+
+ # Add here commands to install the package into debian/exonerate.
+ $(MAKE) DESTDIR=$(CURDIR)/debian/exonerate install
+
+
+# Build architecture-independent files here.
+binary-indep: build install
+# We have nothing to do by default.
+
+# Build architecture-dependent files here.
+binary-arch: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs ChangeLog
+ dh_installdocs
+ dh_installexamples
+# dh_install
+# dh_installmenu
+# dh_installdebconf
+# dh_installlogrotate
+# dh_installemacsen
+# dh_installpam
+# dh_installmime
+# dh_python
+# dh_installinit
+# dh_installcron
+# dh_installinfo
+ dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+# dh_perl
+# dh_makeshlibs
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
Property changes on: trunk/packages/exonerate/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/packages/exonerate/trunk/debian/watch
===================================================================
--- trunk/packages/exonerate/trunk/debian/watch (rev 0)
+++ trunk/packages/exonerate/trunk/debian/watch 2007-07-02 11:24:14 UTC (rev 352)
@@ -0,0 +1,3 @@
+version=3
+http://www.ebi.ac.uk/~guy/exonerate/exonerate-([0-9.]*)\.tar\.gz
+
More information about the debian-med-commit
mailing list