[med-svn] r353 - in trunk/packages/exonerate/trunk/debian: . manpages

smoe-guest at alioth.debian.org smoe-guest at alioth.debian.org
Mon Jul 2 11:42:20 UTC 2007 

Author: smoe-guest
Date: 2007-07-02 11:42:20 +0000 (Mon, 02 Jul 2007)
New Revision: 353

Added:
   trunk/packages/exonerate/trunk/debian/manpages/
   trunk/packages/exonerate/trunk/debian/manpages/exonerate-client
   trunk/packages/exonerate/trunk/debian/manpages/exonerate-server
   trunk/packages/exonerate/trunk/debian/manpages/fasta2esd
   trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna
   trunk/packages/exonerate/trunk/debian/manpages/fastachecksum
   trunk/packages/exonerate/trunk/debian/manpages/fastaclean
   trunk/packages/exonerate/trunk/debian/manpages/fastaclip
   trunk/packages/exonerate/trunk/debian/manpages/fastacomposition
   trunk/packages/exonerate/trunk/debian/manpages/fastadiff
   trunk/packages/exonerate/trunk/debian/manpages/fastaexplode
   trunk/packages/exonerate/trunk/debian/manpages/fastafetch
   trunk/packages/exonerate/trunk/debian/manpages/fastahardmask
   trunk/packages/exonerate/trunk/debian/manpages/fastaindex
   trunk/packages/exonerate/trunk/debian/manpages/fastalength
   trunk/packages/exonerate/trunk/debian/manpages/fastanrdb
   trunk/packages/exonerate/trunk/debian/manpages/fastaoverlap.1
   trunk/packages/exonerate/trunk/debian/manpages/fastareformat
   trunk/packages/exonerate/trunk/debian/manpages/fastaremove
   trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp
   trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask
   trunk/packages/exonerate/trunk/debian/manpages/fastasort
   trunk/packages/exonerate/trunk/debian/manpages/fastasplit
   trunk/packages/exonerate/trunk/debian/manpages/fastasubseq
   trunk/packages/exonerate/trunk/debian/manpages/fastatranslate
   trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds
Modified:
   trunk/packages/exonerate/trunk/debian/exonerate.manpages
Log:
Added default man page to those executables that have none such provided by upstream.


Modified: trunk/packages/exonerate/trunk/debian/exonerate.manpages
===================================================================
--- trunk/packages/exonerate/trunk/debian/exonerate.manpages	2007-07-02 11:24:14 UTC (rev 352)
+++ trunk/packages/exonerate/trunk/debian/exonerate.manpages	2007-07-02 11:42:20 UTC (rev 353)
@@ -1,3 +1,27 @@
 doc/man/man1/exonerate.1
 doc/man/man1/ipcress.1
-
+debian/manpages/exonerate-client
+debian/manpages/exonerate-server
+debian/manpages/fasta2esd
+debian/manpages/fastaannotatecdna
+debian/manpages/fastachecksum
+debian/manpages/fastaclean
+debian/manpages/fastaclip
+debian/manpages/fastacomposition
+debian/manpages/fastadiff
+debian/manpages/fastaexplode
+debian/manpages/fastafetch
+debian/manpages/fastahardmask
+debian/manpages/fastaindex
+debian/manpages/fastalength
+debian/manpages/fastanrdb
+debian/manpages/fastaoverlap.1
+debian/manpages/fastareformat
+debian/manpages/fastaremove
+debian/manpages/fastarevcomp
+debian/manpages/fastasoftmask
+debian/manpages/fastasort
+debian/manpages/fastasplit
+debian/manpages/fastasubseq
+debian/manpages/fastatranslate
+debian/manpages/fastavalidcds

Added: trunk/packages/exonerate/trunk/debian/manpages/exonerate-client
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/exonerate-client	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/exonerate-client	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/exonerate-client
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/exonerate-server
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/exonerate-server	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/exonerate-server	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/exonerate-server
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fasta2esd
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fasta2esd	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fasta2esd	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fasta2esd
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastaannotatecdna
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastachecksum
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastachecksum	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastachecksum	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastachecksum
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastaclean
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaclean	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaclean	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastaclean
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastaclip
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaclip	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaclip	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastaclip
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastacomposition
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastacomposition	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastacomposition	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastacomposition
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastadiff
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastadiff	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastadiff	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastadiff
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastaexplode
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaexplode	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaexplode	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastaexplode
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastafetch
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastafetch	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastafetch	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastafetch
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastahardmask
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastahardmask	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastahardmask	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastahardmask
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastaindex
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaindex	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaindex	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastaindex
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastalength
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastalength	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastalength	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastalength
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastanrdb
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastanrdb	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastanrdb	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastanrdb
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastaoverlap.1
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaoverlap.1	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaoverlap.1	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1,122 @@
+.\"                                      Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH EXONERATE 1 "30 Jun 2007"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh        disable hyphenation
+.\" .hy        enable hyphenation
+.\" .ad l      left justify
+.\" .ad b      justify to both left and right margins
+.\" .nf        disable filling
+.\" .fi        enable filling
+.\" .br        insert line break
+.\" .sp <n>    insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+exonerate \- suite for investigating DNA and RNA sequence similarities
+.SH SYNOPSIS
+.B exonerate-client
+.RI [ --help ]
+.br
+.B exonerate-server
+.RI [ --help ]
+.br
+.B fasta2esd
+.RI [ --help ]
+.br
+.B fastaannotatecdna
+.RI [ --help ]
+.br
+.B fastachecksum
+.RI [ --help ]
+.br
+.B fastaclean
+.RI [ --help ]
+.br
+.B fastaclip
+.RI [ --help ]
+.br
+.B fastacomposition
+.RI [ --help ]
+.br
+.B fastadiff
+.RI [ --help ]
+.br
+.B fastaexplode
+.RI [ --help ]
+.br
+.B fastafetch
+.RI [ --help ]
+.br
+.B fastahardmask
+.RI [ --help ]
+.br
+.B fastaindex
+.RI [ --help ]
+.br
+.B fastalength
+.RI [ --help ]
+.br
+.B fastanrdb
+.RI [ --help ]
+.br
+.B fastaoverlap
+.RI [ --help ]
+.br
+.B fastareformat
+.RI [ --help ]
+.br
+.B fastaremove
+.RI [ --help ]
+.br
+.B fastarevcomp
+.RI [ --help ]
+.br
+.B fastasoftmask
+.RI [ --help ]
+.br
+.B fastasort
+.RI [ --help ]
+.br
+.B fastasplit
+.RI [ --help ]
+.br
+.B fastasubseq
+.RI [ --help ]
+.br
+.B fastatranslate
+.RI [ --help ]
+.br
+.B fastavalidcds
+.RI [ --help ]
+.br
+.SH DESCRIPTION
+These programs are not described by the upstream author, however, some information
+is available via the --help and -h arguments for all these programs. Whoever is using
+any of these programs in routine, is requested to provide a seed of a respective man page
+to the upstream author.
+.PP
+.SH OPTIONS
+.TP
+.B \-h,
+.B \-\-help
+Show summary of options.
+.TP
+.B \-v, \-\-version
+Show version of program.
+.SH SEE ALSO
+.BR http://www.ebi.ac.uk/~guy/exonerate/
+.br
+The author of this package provides a beginner (
+.IR http://www.ebi.ac.uk/~guy/exonerate/beginner.html
+) and and avanced 
+.RI http://www.ebi.ac.uk/~guy/exonerate/advanced.html
+) tutorial on his web pages.
+.SH AUTHOR
+exonerate was written by Guy Slater <guy at ebi.ac.uk>.
+.PP
+This manual page was written by Steffen Möller
+for the Debian project (but may be used by others).

Added: trunk/packages/exonerate/trunk/debian/manpages/fastareformat
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastareformat	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastareformat	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastareformat
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastaremove
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastaremove	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastaremove	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastaremove
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastarevcomp
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastasoftmask
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastasort
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastasort	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastasort	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastasort
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastasplit
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastasplit	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastasplit	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastasplit
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastasubseq
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastasubseq	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastasubseq	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastasubseq
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastatranslate
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastatranslate	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastatranslate	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastatranslate
___________________________________________________________________
Name: svn:special
   + *

Added: trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds
===================================================================
--- trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds	                        (rev 0)
+++ trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds	2007-07-02 11:42:20 UTC (rev 353)
@@ -0,0 +1 @@
+link fastaoverlap
\ No newline at end of file


Property changes on: trunk/packages/exonerate/trunk/debian/manpages/fastavalidcds
___________________________________________________________________
Name: svn:special
   + *

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