[med-svn] r1900 - in trunk/packages/mgltools: . autodocktools/trunk/debian bhtree/trunk/debian dejavu/trunk/debian geomutils/trunk/debian gle/trunk/debian mglutil/trunk/debian networkeditor/trunk/debian opengltk/trunk/debian pmv/trunk/debian
smoe-guest at alioth.debian.org
smoe-guest at alioth.debian.org
Wed May 21 10:28:03 UTC 2008
Author: smoe-guest
Date: 2008-05-21 10:28:02 +0000 (Wed, 21 May 2008)
New Revision: 1900
Added:
trunk/packages/mgltools/autodocktools/trunk/debian/README.source
trunk/packages/mgltools/autodocktools/trunk/debian/manpages
trunk/packages/mgltools/autodocktools/trunk/debian/watch
trunk/packages/mgltools/bhtree/trunk/debian/README.Debian
trunk/packages/mgltools/bhtree/trunk/debian/README.source
trunk/packages/mgltools/bhtree/trunk/debian/watch
trunk/packages/mgltools/dejavu/trunk/debian/README.Debian
trunk/packages/mgltools/dejavu/trunk/debian/README.source
trunk/packages/mgltools/dejavu/trunk/debian/watch
trunk/packages/mgltools/geomutils/trunk/debian/README.Debian
trunk/packages/mgltools/geomutils/trunk/debian/README.source
trunk/packages/mgltools/geomutils/trunk/debian/watch
trunk/packages/mgltools/gle/trunk/debian/README.Debian
trunk/packages/mgltools/gle/trunk/debian/README.source
trunk/packages/mgltools/gle/trunk/debian/watch
trunk/packages/mgltools/mglutil/trunk/debian/README.Debian
trunk/packages/mgltools/mglutil/trunk/debian/README.source
trunk/packages/mgltools/mglutil/trunk/debian/watch
trunk/packages/mgltools/networkeditor/trunk/debian/README.Debian
trunk/packages/mgltools/networkeditor/trunk/debian/README.source
trunk/packages/mgltools/networkeditor/trunk/debian/watch
trunk/packages/mgltools/opengltk/trunk/debian/README.source
trunk/packages/mgltools/opengltk/trunk/debian/watch
trunk/packages/mgltools/pmv/trunk/debian/README.Debian
trunk/packages/mgltools/pmv/trunk/debian/README.source
trunk/packages/mgltools/pmv/trunk/debian/watch
Modified:
trunk/packages/mgltools/TODO
trunk/packages/mgltools/autodocktools/trunk/debian/README.Debian
trunk/packages/mgltools/autodocktools/trunk/debian/changelog
trunk/packages/mgltools/autodocktools/trunk/debian/control
trunk/packages/mgltools/autodocktools/trunk/debian/dirs
trunk/packages/mgltools/autodocktools/trunk/debian/menu
trunk/packages/mgltools/autodocktools/trunk/debian/rules
trunk/packages/mgltools/bhtree/trunk/debian/changelog
trunk/packages/mgltools/bhtree/trunk/debian/control
trunk/packages/mgltools/dejavu/trunk/debian/changelog
trunk/packages/mgltools/dejavu/trunk/debian/control
trunk/packages/mgltools/dejavu/trunk/debian/rules
trunk/packages/mgltools/geomutils/trunk/debian/changelog
trunk/packages/mgltools/geomutils/trunk/debian/control
trunk/packages/mgltools/gle/trunk/debian/changelog
trunk/packages/mgltools/gle/trunk/debian/control
trunk/packages/mgltools/mglutil/trunk/debian/changelog
trunk/packages/mgltools/mglutil/trunk/debian/control
trunk/packages/mgltools/mglutil/trunk/debian/rules
trunk/packages/mgltools/networkeditor/trunk/debian/changelog
trunk/packages/mgltools/networkeditor/trunk/debian/control
trunk/packages/mgltools/opengltk/trunk/debian/README.Debian
trunk/packages/mgltools/opengltk/trunk/debian/changelog
trunk/packages/mgltools/opengltk/trunk/debian/control
trunk/packages/mgltools/pmv/trunk/debian/changelog
trunk/packages/mgltools/pmv/trunk/debian/control
trunk/packages/mgltools/pmv/trunk/debian/rules
Log:
First good impressions.
Modified: trunk/packages/mgltools/TODO
===================================================================
--- trunk/packages/mgltools/TODO 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/TODO 2008-05-21 10:28:02 UTC (rev 1900)
@@ -4,8 +4,9 @@
Vision
symserv
+ NetworkEditor
+ bhtree
-
* need to have their descriptions confirmed
PyBabel
@@ -14,17 +15,43 @@
Scenario
UTpackages
Vision (description was copied from mgltools.scripps.edu)
+ geomutils
* License
W: mgltools-volume: extra-license-file usr/share/pyshared/Volume/Renderers/UTVolumeLibrary/LICENSE
QSlimLib comes with additional license which are not described properly in the debian/copyright file.
+ W: mgltools-networkeditor: extra-license-file usr/share/pyshared/NetworkEditor/LICENSE
+ which seems to be just the same like the one that the metapackage distributes?!?!?
+
+* Other
+
+W: mgltools-vision: binary-without-manpage usr/bin/runVision
+W: mgltools-vision: extra-license-file usr/share/pyshared/Vision/LICENSE
+W: mgltools-vision: script-not-executable ./usr/share/pyshared/Vision/bin/runVision
+W: mgltools-vision: executable-not-elf-or-script ./usr/share/pyshared/Vision/Icons/vision.png
+W: mgltools-vision: copyright-without-copyright-notice
+
+W: mgltools-pmv: binary-without-manpage usr/bin/runPmv
+
+autodocktools: Make runAdt.1 be found
+
* General changes
- lintian warns about copyright-without-copyright-notice, which
probably should be fixed.
+ - build dependencies of gle do not seem right.
* Upstream, please consider to
- scenario: fix a few typos in the PKG-INFO and scenario/Readme
+ - mglutil: find . -name "*.gif" | xargs -r chmod -x
+ - mglutil: path to tcsh is /usr/bin/tcsh in Debian (albeit being symbolically linked, is automatically fixed by packaging script, so this is a non-issue)
+ - mglutil: find . -name "*.csh" -o -name "getlatest" | xargs -r chmod +x
+ - W: mgltools-dejavu: executable-not-elf-or-script ./usr/share/pyshared/DejaVu/RELNOTES
+ - W: mgltools-autodocktools: script-not-executable ./usr/share/pyshared/AutoDockTools/bin/runAdt
+ - Volum: Prevent large test folder from being installed
+
+
+
Modified: trunk/packages/mgltools/autodocktools/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/README.Debian 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,10 +1,25 @@
autodocktools for Debian
-------------------------
+========================
-This package aims at providing the complete infrastructure for
-ligand screening with Debian Linux.
+This package aims at providing the complete infrastructure for ligand
+screening with Debian Linux. It is part of the MGL (Molecular Graphics
+Labs at Scripps) Python tools set for the computational and visual
+interaction of protein structures and their ligands. Lintian warns
+about the copyright-without-copyright-notice, which is an artifact of the
+source tar file being extracted from a larger tar file that represents
+the MGLtools.
-The autodocktools.orig.tar.gz is part of the MGLTools package
-and as such not directly retrievable online.
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
- -- Steffen Moeller <moeller at debian.org> Thu, 20 Dec 2007 16:27:31 +0100
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/autodocktools/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+PyBabel
+=======
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/autodocktools/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,10 +1,10 @@
-autodocktools (1.5.0.cvs.20080122) unstable; urgency=low
+autodocktools (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:32 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 21 May 2008 11:42:14 +0200
-autodocktools (1.5.0-1) unstable; urgency=low
+autodocktools (1.5.0-1) UNRELEASED; urgency=low
* Initial release.
Modified: trunk/packages/mgltools/autodocktools/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,8 +3,10 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: current
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/autodocktools/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/autodocktools/trunk/
Homepage: http://autodock.scripps.edu/
Package: mgltools-autodocktools
@@ -13,6 +15,10 @@
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-pmv, mgltools-molkit, mgltools-volume, mgltools-support, python-imaging-tk, mgltools-viewerframework
Suggests: autodock
Description: GUI to help set up, launch and analyze AutoDock dockings
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
AutoDock is a well established package for the automated screening of
libraries of formal representation of chemical compounds that putatively
bind to a particular protein at hand. This package provides a graphical
Modified: trunk/packages/mgltools/autodocktools/trunk/debian/dirs
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/dirs 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/dirs 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,2 +1 @@
usr/bin
-usr/sbin
Added: trunk/packages/mgltools/autodocktools/trunk/debian/manpages
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/manpages (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/manpages 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1 @@
+debian/runAdt.1
Modified: trunk/packages/mgltools/autodocktools/trunk/debian/menu
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/menu 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/menu 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,2 +1,2 @@
-?package(autodocktools):needs="X11" section="Applications/Science"\
+?package(mgltools-autodocktools):needs="X11" section="Applications/Science/Biology"\
title="AutoDockTools" command="/usr/bin/runAdt"
Modified: trunk/packages/mgltools/autodocktools/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/rules 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/rules 2008-05-21 10:28:02 UTC (rev 1900)
@@ -16,4 +16,6 @@
#include /usr/share/cdbs/1/rules/simple-patchsys.mk
clean::
+ find . -name CVS -a -type d | xargs -r rm -r
+ find . -name runAdt | xargs -r chmod +x
rm -rf build build-stamp
Added: trunk/packages/mgltools/autodocktools/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/bhtree/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/bhtree/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/bhtree/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,23 @@
+mgltools-bhtree
+===============
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/bhtree/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/bhtree/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/bhtree/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+bhtree
+======
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/bhtree/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/bhtree/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/bhtree/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,8 +1,8 @@
-bhtree (1.5.0.cvs.20080122) unstable; urgency=low
+bhtree (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:33 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 21 May 2008 11:21:58 +0200
bhtree (1.5.0-1) unstable; urgency=low
Modified: trunk/packages/mgltools/bhtree/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/bhtree/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/bhtree/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,8 +3,10 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: 2.4,2.5
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/bhtree/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/bhtree/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-bhtree
@@ -12,4 +14,8 @@
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
Description: Bhtree library extension module
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
The library is needed by mgltools-autodocktools at runtime.
Added: trunk/packages/mgltools/bhtree/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/bhtree/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/bhtree/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/dejavu/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/dejavu/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,23 @@
+mgltools-dejavu
+===============
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/dejavu/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/dejavu/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+DejaVu
+======
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/dejavu/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/dejavu/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,8 +1,8 @@
-dejavu (1.5.0.cvs.20080122) unstable; urgency=low
+dejavu (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:33 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 21 May 2008 11:12:08 +0200
dejavu (1.5.0-1) unstable; urgency=low
Modified: trunk/packages/mgltools/dejavu/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/dejavu/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,13 +3,19 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: 2.4,2.5
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/dejavu/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/dejavu/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-dejavu
XB-Python-Version: ${python:Versions}
Architecture: all
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-opengltk, mgltools-qslimlib, mgltools-pyglf
-Description: OpenGL based 3D geometry viewer python package
+Description: OpenGL based 3D geometry viewer Python package
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
The library is needed by mgltools-autodocktools at runtime.
Modified: trunk/packages/mgltools/dejavu/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/rules 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/dejavu/trunk/debian/rules 2008-05-21 10:28:02 UTC (rev 1900)
@@ -17,4 +17,5 @@
clean::
find . -name CVS -a -type d| xargs -r rm -r
+ find . -name RELNOTES | xargs -r chmod -x
rm -rf build build-stamp debian/Pmv
Added: trunk/packages/mgltools/dejavu/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/dejavu/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/dejavu/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/geomutils/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/geomutils/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/geomutils/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,23 @@
+mgltools-pybabel
+================
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/geomutils/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/geomutils/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/geomutils/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+PyBabel
+=======
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/geomutils/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/geomutils/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/geomutils/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,10 +1,10 @@
-geomutils (1.5.0.cvs.20080122) unstable; urgency=low
+geomutils (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:33 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 21 May 2008 10:26:38 +0200
-geomutils (1.5.0-1) unstable; urgency=low
+geomutils (1.5.0-1) UNRELEASED; urgency=low
* Initial release.
Modified: trunk/packages/mgltools/geomutils/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/geomutils/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/geomutils/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,13 +3,20 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: 2.4,2.5
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pybabel/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/pybabel/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-geomutils
XB-Python-Version: ${python:Versions}
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
-Description: geomutils library
- The library is needed by mgltools-autodocktools at runtime.
+Description: Python library for geometric analyses
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ The library implements a series of functions for geometric analyses,
+ e.g., for calculating distances or intersections.
Added: trunk/packages/mgltools/geomutils/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/geomutils/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/geomutils/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/gle/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/gle/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/gle/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,23 @@
+mgltools-gle
+============
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/gle/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/gle/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/gle/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+gle
+===
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/gle/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/gle/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/gle/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,10 +1,10 @@
-gle (1.5.0.cvs.20080122) unstable; urgency=low
+gle (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:34 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 23 Jan 2008 13:26:34 +0100
-gle (1.5.0-1) unstable; urgency=low
+gle (1.5.0-1) UNRELEASED; urgency=low
* Initial release.
Modified: trunk/packages/mgltools/gle/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/gle/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/gle/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,8 +3,10 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: 2.4,2.5
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/gle/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/gle/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-gle
@@ -12,4 +14,8 @@
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
Description: GLE library python extension
- The library is needed by mgltools-autodocktools at runtime.
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ It provides a swig-generated interface to the GLE library.
Added: trunk/packages/mgltools/gle/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/gle/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/gle/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/mglutil/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/mglutil/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,23 @@
+mgltools-mglutil
+================
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/mglutil/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/mglutil/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+mglutil
+=======
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/mglutil/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/mglutil/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,10 +1,10 @@
-mglutil (1.5.0.cvs.20080122) unstable; urgency=low
+mglutil (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:34 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 21 May 2008 09:42:20 +0200
-mglutil (1.5.0-1) unstable; urgency=low
+mglutil (1.5.0-1) UNRELEASED; urgency=low
* Initial release.
Modified: trunk/packages/mgltools/mglutil/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/mglutil/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,13 +3,21 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: 2.4,2.5
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pybabel/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/pybabel/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-mglutil
XB-Python-Version: ${python:Versions}
Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-sff
-Description: Python-based Molecular Viewer
- The library is needed by mgltools-autodocktools at runtime.
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-sff, python-pmw
+Suggests: tcsh
+Description: Molecular Graphics Laboratory utility collection
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ It is needed by mgltools-autodocktools at runtime, providing a series
+ of utility functions on from parallel programming to statistics.
Modified: trunk/packages/mgltools/mglutil/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/rules 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/mglutil/trunk/debian/rules 2008-05-21 10:28:02 UTC (rev 1900)
@@ -17,4 +17,7 @@
clean::
find . -name CVS -a -type d| xargs -r rm -r
+ find . -name "*.gif" | xargs -r chmod -x
+ find . -name "*.csh" | xargs -r sed -i -e 's%#!/bin/tcsh%#!/usr/bin/tcsh%'
+ find . -name "*.csh" -o -name "getlatest" | xargs -r chmod +x
rm -rf build build-stamp debian/Pmv
Added: trunk/packages/mgltools/mglutil/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/mglutil/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/mglutil/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/networkeditor/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,23 @@
+mgltools-networkeditor
+======================
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/networkeditor/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+NetworkEditor
+=============
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/networkeditor/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,10 +1,10 @@
-networkeditor (1.5.0.cvs.20080122) unstable; urgency=low
+networkeditor (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:35 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 23 Jan 2008 13:26:35 +0100
-networkeditor (1.5.0-1) unstable; urgency=low
+networkeditor (1.5.0-1) UNRELEASED; urgency=low
* Initial release.
Modified: trunk/packages/mgltools/networkeditor/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,13 +3,20 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: 2.4,2.5
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/networkeditor/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/networkeditor/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-networkeditor
XB-Python-Version: ${python:Versions}
Architecture: all
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
-Description: OpenGL based 3D geometry viewer python package
- The library is needed by mgltools-autodocktools at runtime.
+Description: Python GUI library for the editing of networks
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ It provides a graphics user interface to edit networks and is used
+ by the Vision packages that formulates workflows.
Added: trunk/packages/mgltools/networkeditor/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/networkeditor/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/networkeditor/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Modified: trunk/packages/mgltools/opengltk/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/opengltk/trunk/debian/README.Debian 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/opengltk/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,3 +1,27 @@
+mgltools-opengltk
+=================
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
+
To compile this package, a change needs to be performed in
/usr/include/GL/gl.h. Respective instructions are indicated from here
http://mgltools.scripps.edu/documentation/faq/problem-with-undefined-symbol-glblendequationseparateati
Added: trunk/packages/mgltools/opengltk/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/opengltk/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/opengltk/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+opengltk
+========
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/opengltk/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/opengltk/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/opengltk/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,8 +1,8 @@
-opengltk (1.5.0.cvs.20080122) unstable; urgency=low
+opengltk (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:36 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 21 May 2008 10:45:54 +0200
opengltk (1.5.0-1) unstable; urgency=low
Modified: trunk/packages/mgltools/opengltk/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/opengltk/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/opengltk/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,7 +3,7 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.4), swig (>= 1.3.20), libglu1-mesa-dev, mesa-common-dev, tk-dev, libxmu-dev
-Standards-Version: 3.7.2
+Standards-Version: 3.7.3
XS-Python-Version: all
Homepage: http://mgltools.scripps.edu/
Added: trunk/packages/mgltools/opengltk/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/opengltk/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/opengltk/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/pmv/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/pmv/trunk/debian/README.Debian 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,23 @@
+mgltools-pybabel
+================
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/pmv/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/pmv/trunk/debian/README.source 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,13 @@
+PyBabel
+=======
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/pmv/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/changelog 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/pmv/trunk/debian/changelog 2008-05-21 10:28:02 UTC (rev 1900)
@@ -1,8 +1,8 @@
-pmv (1.5.0.cvs.20080122) unstable; urgency=low
+pmv (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:36 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 21 May 2008 11:27:24 +0200
pmv (1.5.0-1) unstable; urgency=low
Modified: trunk/packages/mgltools/pmv/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/control 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/pmv/trunk/debian/control 2008-05-21 10:28:02 UTC (rev 1900)
@@ -3,8 +3,10 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
+Standards-Version: 3.7.3
XS-Python-Version: current
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pmv/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/pmv/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-pmv
@@ -12,4 +14,9 @@
Architecture: all
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, mgltools-qslimlib, mgltools-support
Description: Python-based Molecular Viewer
- The library is needed by mgltools-autodocktools at runtime.
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ It provides a complete molecular viewer of protein structures and their
+ ligands.
Modified: trunk/packages/mgltools/pmv/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/rules 2008-05-20 17:34:20 UTC (rev 1899)
+++ trunk/packages/mgltools/pmv/trunk/debian/rules 2008-05-21 10:28:02 UTC (rev 1900)
@@ -18,5 +18,6 @@
clean::
rm -rf build build-stamp debian/Pmv
find . -name runPmv -exec chmod 755 {} \;
+ find . -name CVS -a -type d | xargs -r rm -r
find . -name "*.pdb" -exec chmod 644 {} \;
sed -i -e 's/# update the widget entr.*$$/# update the widget entryfields/' Pmv/sdCommands.py
Added: trunk/packages/mgltools/pmv/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/pmv/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/pmv/trunk/debian/watch 2008-05-21 10:28:02 UTC (rev 1900)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
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