[med-svn] r1901 - in trunk/packages/mgltools: autodocktools/trunk/debian vision/trunk/debian

[smoe-guest at alioth.debian.org]

Author: smoe-guest
Date: 2008-05-21 10:43:49 +0000 (Wed, 21 May 2008)
New Revision: 1901

Added:
   trunk/packages/mgltools/vision/trunk/debian/README.Debian
   trunk/packages/mgltools/vision/trunk/debian/README.source
   trunk/packages/mgltools/vision/trunk/debian/watch
Modified:
   trunk/packages/mgltools/autodocktools/trunk/debian/changelog
   trunk/packages/mgltools/vision/trunk/debian/rules
Log:
Completed work on Vision.
Closing ITP in autodocktools.


Modified: trunk/packages/mgltools/autodocktools/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/autodocktools/trunk/debian/changelog	2008-05-21 10:28:02 UTC (rev 1900)
+++ trunk/packages/mgltools/autodocktools/trunk/debian/changelog	2008-05-21 10:43:49 UTC (rev 1901)
@@ -1,6 +1,6 @@
 autodocktools (1.5.1-1) experimental; urgency=low
 
-  * New upstream version.
+  * New upstream version (Closes: #458811).
 
  -- Steffen Moeller <moeller at debian.org>  Wed, 21 May 2008 11:42:14 +0200
 

Added: trunk/packages/mgltools/vision/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/README.Debian	                        (rev 0)
+++ trunk/packages/mgltools/vision/trunk/debian/README.Debian	2008-05-21 10:43:49 UTC (rev 1901)
@@ -0,0 +1,23 @@
+mgltools-vision
+===============
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands.  Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>

Added: trunk/packages/mgltools/vision/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/README.source	                        (rev 0)
+++ trunk/packages/mgltools/vision/trunk/debian/README.source	2008-05-21 10:43:49 UTC (rev 1901)
@@ -0,0 +1,13 @@
+Vision
+======
+
+The URL presented in debian/watch guides to a tar file 
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>

Modified: trunk/packages/mgltools/vision/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/rules	2008-05-21 10:28:02 UTC (rev 1900)
+++ trunk/packages/mgltools/vision/trunk/debian/rules	2008-05-21 10:43:49 UTC (rev 1901)
@@ -17,5 +17,7 @@
 
 clean::
 	find . -name CVS -a -type d| xargs -r rm -r
+	find . -name "*.png" | xargs -r chmod -x 
+	find . -name "runVision" | xargs -r chmod +x 
 	rm -rf build build-stamp debian/Pmv
 	find . -name *.png -o -name *.pdb -o -name *.gif -exec file chmod 644 '{}' \;

Added: trunk/packages/mgltools/vision/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/mgltools/vision/trunk/debian/watch	2008-05-21 10:43:49 UTC (rev 1901)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz