[med-svn] r11273 - trunk/packages/strap/trunk/debian

[Christoph Gille]

Author: christophgil-guest
Date: 2012-06-07 21:24:44 +0000 (Thu, 07 Jun 2012)
New Revision: 11273

Modified:
   trunk/packages/strap/trunk/debian/Sed.sh
   trunk/packages/strap/trunk/debian/control
   trunk/packages/strap/trunk/debian/rules
   trunk/packages/strap/trunk/debian/strap.install
Log:
copying two files from latex-extra not int strap.install but in rules

Modified: trunk/packages/strap/trunk/debian/Sed.sh
===================================================================
--- trunk/packages/strap/trunk/debian/Sed.sh	2012-06-07 19:57:38 UTC (rev 11272)
+++ trunk/packages/strap/trunk/debian/Sed.sh	2012-06-07 21:24:44 UTC (rev 11273)
@@ -1,3 +1,7 @@
+
+# This script is used to generate man pages and shell scripts from a template
+# It is not part of the package build process.
+ 
 cat bin/toXXX.sh | sed 's|-toXXX|-toFasta|1' > bin/strap_util_toFasta
 cat bin/toXXX.sh | sed 's|-toXXX|-toMultipleFasta|1' > bin/strap_util_toMultipleFasta
 cat bin/toXXX.sh | sed 's|-toXXX|-toClustal|1' > bin/strap_util_toClustal

Modified: trunk/packages/strap/trunk/debian/control
===================================================================
--- trunk/packages/strap/trunk/debian/control	2012-06-07 19:57:38 UTC (rev 11272)
+++ trunk/packages/strap/trunk/debian/control	2012-06-07 21:24:44 UTC (rev 11273)
@@ -15,19 +15,19 @@
 Recommends:  muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align
 Suggests:
 Enhances: clustalw, tm-align, pymol, mustang, muscle, mafft, t-coffee, probcons, dialign, dialign-t, amap-align
-Description: Compute and edit Sequence and structure alignments of
- proteins.  Strap is a work-bench for proteins. It can compute
- multiple sequence alignments and structure alignments and it is used
- for structure/function prediction and database searching.  Modern
- standard tools can be used in an intuitive graphical user interface
- which follows the paradigms of modern user interfaces such as drag'n
- drop.  The sequence alignment view and the 3D-visualization (Pymol,
- Jmol or OpenAstex) are tightly linked.  Information can be attached
- to residue selections such as free text notes as well as 3D and 1D
- display styles.  Figures can be created in publication quality. The
- alignment can be exported in several formats: PDF, MS-Word, HTML,
- Jalview, Multiple-Fasta, ClustalW, MSF, HSSP - see
- http://3d-alignment.eu/ for details.  Interactive alignments can be
- published in Web-pages. For this purpose, HTML code is generated
- automatically. Strap is scriptable and can be used by programs and
- web-services to display sequence alignments and 3D-superpositions.
+Description: Strap is a work-bench for proteins. It can be used to
+ display, edit and compute multiple sequence alignments, structure
+ alignments and 3D-structure superpositions. It aids structure /
+ function prediction and database searching.  Modern standard tools
+ can be used in an intuitive graphical user interface which follows
+ the paradigms of modern user interfaces such as drag'n drop.  The
+ sequence alignment view and the Pymol 3D-visualization are tightly
+ linked.  Information can be attached to residue selections such as
+ free text notes as well as 3D and 1D display styles.  Figures can be
+ created in publication quality. The alignment can be exported in
+ several formats: PDF, MS-Word, HTML, Jalview, Multiple-Fasta,
+ ClustalW, MSF, HSSP - see http://3d-alignment.eu/ for details.
+ Interactive alignments can be published in Web-pages. For this
+ purpose, HTML code is generated automatically. Strap is scriptable
+ and can be used by programs and web-services to display sequence
+ alignments and 3D-superpositions.

Modified: trunk/packages/strap/trunk/debian/rules
===================================================================
--- trunk/packages/strap/trunk/debian/rules	2012-06-07 19:57:38 UTC (rev 11272)
+++ trunk/packages/strap/trunk/debian/rules	2012-06-07 21:24:44 UTC (rev 11273)
@@ -7,4 +7,11 @@
 %:
 	dh $@
 
+override_dh_auto_build:
+	# Only two small sty files of the huge package texlive-latex-extra are required in Strap
+	# Include these two files such that texlive-latex-extra  can be ommitted
+	mkdir -p usr/lib/strap
+	cp /usr/share/texmf-texlive/tex/latex/texshade/texshade.sty  usr/lib/strap
+	cp /usr/share/texmf-texlive/tex/latex/vmargin/vmargin.sty usr/lib/strap	
 
+

Modified: trunk/packages/strap/trunk/debian/strap.install
===================================================================
--- trunk/packages/strap/trunk/debian/strap.install	2012-06-07 19:57:38 UTC (rev 11272)
+++ trunk/packages/strap/trunk/debian/strap.install	2012-06-07 21:24:44 UTC (rev 11273)
@@ -1,7 +1,6 @@
 debian/bin/strap_util_toFasta      usr/bin
 debian/bin/strap_util_toMultipleFasta      usr/bin
 debian/bin/strap_util_toClustal      usr/bin
-/usr/share/texmf-texlive/tex/latex/texshade/texshade.sty  usr/lib/strap
-/usr/share/texmf-texlive/tex/latex/vmargin/vmargin.sty usr/lib/strap
 
 
+