[med-svn] r11274 - trunk/packages/strap-base/trunk/debian
Christoph Gille
christophgil-guest at alioth.debian.org
Thu Jun 7 21:25:57 UTC 2012
Author: christophgil-guest
Date: 2012-06-07 21:25:57 +0000 (Thu, 07 Jun 2012)
New Revision: 11274
Removed:
trunk/packages/strap-base/trunk/debian/compileStrap.sh
Modified:
trunk/packages/strap-base/trunk/debian/control
trunk/packages/strap-base/trunk/debian/copyright
trunk/packages/strap-base/trunk/debian/rules
Log:
Improved wording in debian/control; removed unused file
Deleted: trunk/packages/strap-base/trunk/debian/compileStrap.sh
===================================================================
--- trunk/packages/strap-base/trunk/debian/compileStrap.sh 2012-06-07 21:24:44 UTC (rev 11273)
+++ trunk/packages/strap-base/trunk/debian/compileStrap.sh 2012-06-07 21:25:57 UTC (rev 11274)
@@ -1,33 +0,0 @@
-#!/bin/bash
-
-
-mkdir -p $SRC_TMP
-
-CP=.:$TARBALLS/compilationDependencies.jar:
-# Note compilationDependencies.jar contains those classes that are required for compilation but not for runtime.
-# Conditional compilation does not work properly with javac.
-
-for jar in javatar activation commons-codec commons-httpclient commons-logging httpclient httpclient httpcore httpmime; do
- jf=/usr/share/java/$jar.jar
- [ -f $jf ] || echo Jar-file not found $jf
- CP=$CP:$jf
-done
-
-echo Classpath $CP
-echo
-cd $SRC_TMP
-tar -xzf $TARBALLS/strap_1.orig.tar.gz
-cd strap-$VERSION
-echo PWD=$PWD
-SKIP='/metannogen/\|Superimpose_LajollaProtein.java\|ChJv.java\|Flavine.java\|ChAquaScrollBarUI\|StrapMacApplicationListener'
-SRC_FILES=$(find . -name '[A-Z]*.java' | tr ' ' '\n' | grep -v "$SKIP")
-
-javac -cp $CP $SRC_FILES
-NEW_JAR=$TARBALLS/strap-$VERSION.1.jar
-jar -cf $NEW_JAR charite org/apache
-echo NEW_JAR: $NEW_JAR
-
-
-
-
-
Modified: trunk/packages/strap-base/trunk/debian/control
===================================================================
--- trunk/packages/strap-base/trunk/debian/control 2012-06-07 21:24:44 UTC (rev 11273)
+++ trunk/packages/strap-base/trunk/debian/control 2012-06-07 21:25:57 UTC (rev 11274)
@@ -16,13 +16,12 @@
Suggests: strap
Enhances:
Description: Minimal environment for the bioinformatics tool Strap for
- aligning proteins by sequence and/or structure. This package is
- sufficient to run /usr/bin/strap-protein-alignment. But external
- programs and libraries enhancing the functionality of Strap such as
- 3D-visualization, automated 3D-superposition, 3D-alignment and
- sequence alignment are missing. End users should therefore install
- the debian package "strap" which links all required packages. Other
- software using Strap as a viewer for proteins, alignments and
- 3D-superpositions may not need the full spectrum of external
- libraries and may therefore refer to strap-base.
+ aligning proteins by sequence and/or 3D-structure. This package is
+ sufficient to run /usr/bin/strap-protein-alignment. But required
+ debian packages for 3D-visualization, automated sequence alignment
+ and 3D-superposition are not installed automatically. End users
+ should therefore install the debian package strap which links these
+ required packages. The strap-base package may be a dependency of
+ another debian package if used as a viewer for proteins, alignments
+ and 3D-superpositions.
Modified: trunk/packages/strap-base/trunk/debian/copyright
===================================================================
--- trunk/packages/strap-base/trunk/debian/copyright 2012-06-07 21:24:44 UTC (rev 11273)
+++ trunk/packages/strap-base/trunk/debian/copyright 2012-06-07 21:25:57 UTC (rev 11274)
@@ -27,7 +27,7 @@
Copyright: © 2011 Christoph Gille
License: GPL-3
# ********************************************************************************
-Files: remote.png color.gif tools.png pencil.png scissor.png hotplug.png pdf.png 3d.png hotplug.png plug.png Loaded from
+Files: browser.png remote.png color.gif tools.png pencil.png scissor.png hotplug.png pdf.png 3d.png hotplug.png plug.png Loaded from
Source: http://www.phoca.cz/demo/gallery-categories/category/22-nuvola-icons
License: LGPL-2.1
Comment: On Debian systems, the complete text of the Apache license can be found in '/usr/share/common-licenses/LGPL-2.1'
@@ -36,9 +36,9 @@
Source: http://icone.goldenweb.it/index_file/l/en/d2/computer/default.html
License: Citation from web site "The icons stored within our database are free and downloadable in .ico, .bmp, or .gif format. .... " #
# ********************************************************************************
-Files: big_ wikipedia.jpg firefox.png jmol.jpg ncbi*.jpg pfamShort.png pymol.gif pubmed*.png prodom.png uniprot.gif
+Files: Logos *wikipedia.jpg ncbi*.jpg pfamShort.png pymol.gif pubmed*.png prodom.png uniprot.gif
Source: The respective project pages
-License: These are free soft ware projects
+License: These are academic projects
# ********************************************************************************
Files: winzip.gif
Source: http://www.winzip.com/graphics/winzip_icon_xp.gif
Modified: trunk/packages/strap-base/trunk/debian/rules
===================================================================
--- trunk/packages/strap-base/trunk/debian/rules 2012-06-07 21:24:44 UTC (rev 11273)
+++ trunk/packages/strap-base/trunk/debian/rules 2012-06-07 21:25:57 UTC (rev 11274)
@@ -8,20 +8,20 @@
%:
dh $@
-#SRC_TMP := $(shell mktemp --tmpdir --directory strap-base-build.XXXXXXXXXX)
-SRC_TMP := $(HOME)/tmp/build_strap-base
+SRC_TMP := $(shell mktemp --tmpdir --directory strap-base-build.XXXXXXXXXX)
+#SRC_TMP := $(HOME)/tmp/build_strap-base
TARBALLS := $(CURDIR)/../tarballs
ORIG_TAR=$(TARBALLS)/strap-base_$(VERSION).orig.tar.gz
MANFILE1 := ~/java/charite/christo/strap/strap-protein-alignment.1
-
override_dh_installdocs:
dh_installdocs
override_dh_auto_build:
- test -f $(MANFILE1) && cp $(MANFILE1) debian/strap-protein-alignment.1
+ test -f $(MANFILE1) && cp -u $(MANFILE1) debian/strap-protein-alignment.1
cd $(SRC_TMP) && tar -xzf $(ORIG_TAR)
- # Native program to manage GUI frames by frame title. It provides always-on-top, iconization, to-front etc.
+ # Native program to manage GUI frames by frame title.
+ #It provides always-on-top, iconization, to-front etc.
cd $(SRC_TMP)/src && cc -lm -lX11 -o $(CURDIR)/nativeTools_unix2 nativeTools_unix2.c
cd $(SRC_TMP)/src && find . -name "*.java" > ../javaFiles.txt
cd $(SRC_TMP)/src && javac -O -cp @$(SRC_TMP)/classpath.txt @../javaFiles.txt
More information about the debian-med-commit
mailing list