[med-svn] [SCM] tabix branch, meta, updated. meta/0.2.3-1-7-g1794f4f
Charles Plessy
plessy at debian.org
Fri Jun 22 04:43:55 UTC 2012
The following commit has been merged in the meta branch:
commit 1794f4f441d83609a3446ec02a9c30ff78450da4
Author: Charles Plessy <plessy at debian.org>
Date: Fri Jun 22 13:40:19 2012 +0900
Uploaded tabix_0.2.6-1_amd64.changes.
diff --git a/amd64.log b/amd64.log
index c4b1a38..74d783a 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,28 +1,26 @@
-sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
+sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ tabix 0.2.5-1 (amd64) 10 mai 2011 19:43 ║
+║ tabix 0.2.6-1 (amd64) 22 Jun 2012 13:23 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: tabix
-Version: 0.2.5-1
-Source Version: 0.2.5-1
+Version: 0.2.6-1
+Source Version: 0.2.6-1
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/tabix-kQgNo5' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-5eb7067c-fc82-4bb5-8f42-710e8308cc65' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/tabix-qZq0zT/tabix-0.2.6' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/tabix-qZq0zT' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-68fe9f97-1ca3-4f95-940c-68dc727fbb6b' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
-Hit http://ftp.riken.jp sid InRelease
-Hit http://ftp.riken.jp sid/main amd64 Packages/DiffIndex
-Hit http://ftp.riken.jp sid/main TranslationIndex
-Hit http://ftp.jp.debian.org sid InRelease
-Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
-Hit http://ftp.jp.debian.org sid/main TranslationIndex
+Hit ftp://ftp.jaist.ac.jp sid InRelease
+Hit ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex
+Hit ftp://ftp.jaist.ac.jp sid/main Translation-en/DiffIndex
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -37,14 +35,14 @@ Reading state information...
Local sources
─────────────
-tabix_0.2.5-1.dsc exists in .; copying to chroot
+tabix_0.2.6-1.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-54KNrq/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-MRMAvS/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -56,19 +54,14 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
-The following NEW packages will be installed:
- sbuild-build-depends-core-dummy
-debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/704 B of archives.
-After this operation, 0 B of additional disk space will be used.
-Selecting previously deselected package sbuild-build-depends-core-dummy.
-(Reading database ... 10764 files and directories currently installed.)
-Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
-Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
-Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
-Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), cdbs, debhelper (>= 8), zlib1g-dev
-dpkg-deb: building package `sbuild-build-depends-tabix-dummy' in `/«BUILDDIR»/resolver-EYzNZO/apt_archive/sbuild-build-depends-tabix-dummy.deb'.
+sbuild-build-depends-core-dummy is already the newest version.
+The following packages were automatically installed and are no longer required:
+ g++-4.6 libstdc++6-4.6-dev ucf
+Use 'apt-get autoremove' to remove them.
+0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
+Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), zlib1g-dev
+dpkg-deb: building package `sbuild-build-depends-tabix-dummy' in `/«BUILDDIR»/resolver-D5JHV7/apt_archive/sbuild-build-depends-tabix-dummy.deb'.
OK
Reading package lists...
@@ -80,98 +73,117 @@ Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
+The following packages were automatically installed and are no longer required:
+ g++-4.6 libstdc++6-4.6-dev ucf
+Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
- libunistring0 libxml2 man-db po-debconf zlib1g-dev
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev
Suggested packages:
- wamerican wordlist whois vacation devscripts dh-make gettext-doc groff less
- www-browser libmail-box-perl
+ dh-make gettext-doc groff less www-browser libmail-box-perl
Recommended packages:
- autotools-dev curl wget lynx-cur autopoint libglib2.0-data shared-mime-info
- xml-core libmail-sendmail-perl
+ curl wget lynx-cur autopoint libglib2.0-data shared-mime-info xml-core
+ libmail-sendmail-perl
The following NEW packages will be installed:
- bsdmainutils cdbs debhelper file gettext gettext-base groff-base html2text
- intltool-debian libcroco3 libglib2.0-0 libmagic1 libpcre3 libpipeline1
- libunistring0 libxml2 man-db po-debconf sbuild-build-depends-tabix-dummy
- zlib1g-dev
+ debhelper file gettext gettext-base groff-base html2text intltool-debian
+ libasprintf0c2 libcroco3 libffi5 libgettextpo0 libglib2.0-0 libmagic1
+ libpcre3 libpipeline1 libunistring0 libxml2 man-db po-debconf
+ sbuild-build-depends-tabix-dummy zlib1g-dev
+0 upgraded, 21 newly installed, 0 to remove and 0 not upgraded.
+Need to get 9145 kB/9962 kB of archives.
+After this operation, 25.3 MB of additional disk space will be used.
+Get:1 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpipeline1 amd64 1.2.1-1 [39.2 kB]
+Get:2 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libasprintf0c2 amd64 0.18.1.1-9 [26.8 kB]
+Get:3 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libmagic1 amd64 5.11-1 [250 kB]
+Get:4 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpcre3 amd64 1:8.30-5 [242 kB]
+Get:5 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libxml2 amd64 2.8.0+dfsg1-4 [903 kB]
+Get:6 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libglib2.0-0 amd64 2.32.3-1 [2081 kB]
+Get:7 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libcroco3 amd64 0.6.5-1 [151 kB]
+Get:8 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libgettextpo0 amd64 0.18.1.1-9 [145 kB]
+Get:9 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main groff-base amd64 1.21-7 [1151 kB]
+Get:10 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main man-db amd64 2.6.2-1 [1061 kB]
+Get:11 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main file amd64 5.11-1 [53.2 kB]
+Get:12 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main gettext-base amd64 0.18.1.1-9 [154 kB]
+Get:13 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main gettext amd64 0.18.1.1-9 [1975 kB]
+Get:14 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main debhelper all 9.20120608 [700 kB]
+Get:15 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main zlib1g-dev amd64 1:1.2.7.dfsg-12 [215 kB]
debconf: delaying package configuration, since apt-utils is not installed
-0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded.
-Need to get 0 B/9476 kB of archives.
-After this operation, 27.8 MB of additional disk space will be used.
-Selecting previously deselected package bsdmainutils.
-(Reading database ... 10764 files and directories currently installed.)
-Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
-Selecting previously deselected package groff-base.
-Unpacking groff-base (from .../groff-base_1.21-5_amd64.deb) ...
-Selecting previously deselected package libpipeline1.
-Unpacking libpipeline1 (from .../libpipeline1_1.2.0-1_amd64.deb) ...
-Selecting previously deselected package man-db.
-Unpacking man-db (from .../man-db_2.6.0.2-1_amd64.deb) ...
-Selecting previously deselected package libmagic1.
-Unpacking libmagic1 (from .../libmagic1_5.04-5+b1_amd64.deb) ...
-Selecting previously deselected package file.
-Unpacking file (from .../file_5.04-5+b1_amd64.deb) ...
-Selecting previously deselected package gettext-base.
-Unpacking gettext-base (from .../gettext-base_0.18.1.1-3_amd64.deb) ...
-Selecting previously deselected package libpcre3.
-Unpacking libpcre3 (from .../libpcre3_8.12-3_amd64.deb) ...
-Selecting previously deselected package libxml2.
-Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-2+b1_amd64.deb) ...
-Selecting previously deselected package html2text.
+Fetched 9145 kB in 5s (1534 kB/s)
+Selecting previously unselected package libpipeline1:amd64.
+(Reading database ... 11767 files and directories currently installed.)
+Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ...
+Selecting previously unselected package libasprintf0c2:amd64.
+Unpacking libasprintf0c2:amd64 (from .../libasprintf0c2_0.18.1.1-9_amd64.deb) ...
+Selecting previously unselected package libmagic1:amd64.
+Unpacking libmagic1:amd64 (from .../libmagic1_5.11-1_amd64.deb) ...
+Selecting previously unselected package libpcre3:amd64.
+Unpacking libpcre3:amd64 (from .../libpcre3_1%3a8.30-5_amd64.deb) ...
+Selecting previously unselected package libxml2:amd64.
+Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-4_amd64.deb) ...
+Selecting previously unselected package libffi5:amd64.
+Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ...
+Selecting previously unselected package libglib2.0-0:amd64.
+Unpacking libglib2.0-0:amd64 (from .../libglib2.0-0_2.32.3-1_amd64.deb) ...
+Selecting previously unselected package libcroco3:amd64.
+Unpacking libcroco3:amd64 (from .../libcroco3_0.6.5-1_amd64.deb) ...
+Selecting previously unselected package libunistring0:amd64.
+Unpacking libunistring0:amd64 (from .../libunistring0_0.9.3-5_amd64.deb) ...
+Selecting previously unselected package libgettextpo0:amd64.
+Unpacking libgettextpo0:amd64 (from .../libgettextpo0_0.18.1.1-9_amd64.deb) ...
+Selecting previously unselected package groff-base.
+Unpacking groff-base (from .../groff-base_1.21-7_amd64.deb) ...
+Selecting previously unselected package man-db.
+Unpacking man-db (from .../man-db_2.6.2-1_amd64.deb) ...
+Selecting previously unselected package file.
+Unpacking file (from .../archives/file_5.11-1_amd64.deb) ...
+Selecting previously unselected package gettext-base.
+Unpacking gettext-base (from .../gettext-base_0.18.1.1-9_amd64.deb) ...
+Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_amd64.deb) ...
-Selecting previously deselected package libglib2.0-0.
-Unpacking libglib2.0-0 (from .../libglib2.0-0_2.28.6-1_amd64.deb) ...
-Selecting previously deselected package libcroco3.
-Unpacking libcroco3 (from .../libcroco3_0.6.2-1_amd64.deb) ...
-Selecting previously deselected package libunistring0.
-Unpacking libunistring0 (from .../libunistring0_0.9.3-4_amd64.deb) ...
-Selecting previously deselected package gettext.
-Unpacking gettext (from .../gettext_0.18.1.1-3_amd64.deb) ...
-Selecting previously deselected package intltool-debian.
+Selecting previously unselected package gettext.
+Unpacking gettext (from .../gettext_0.18.1.1-9_amd64.deb) ...
+Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ...
-Selecting previously deselected package po-debconf.
-Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ...
-Selecting previously deselected package debhelper.
-Unpacking debhelper (from .../debhelper_8.1.6_all.deb) ...
-Selecting previously deselected package cdbs.
-Unpacking cdbs (from .../archives/cdbs_0.4.93_all.deb) ...
-Selecting previously deselected package zlib1g-dev.
-Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3_amd64.deb) ...
-Selecting previously deselected package sbuild-build-depends-tabix-dummy.
+Selecting previously unselected package po-debconf.
+Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
+Selecting previously unselected package debhelper.
+Unpacking debhelper (from .../debhelper_9.20120608_all.deb) ...
+Selecting previously unselected package zlib1g-dev:amd64.
+Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_amd64.deb) ...
+Selecting previously unselected package sbuild-build-depends-tabix-dummy.
Unpacking sbuild-build-depends-tabix-dummy (from .../sbuild-build-depends-tabix-dummy.deb) ...
-Setting up bsdmainutils (8.2.2) ...
-update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
-update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
-Setting up groff-base (1.21-5) ...
-Setting up libpipeline1 (1.2.0-1) ...
-Setting up man-db (2.6.0.2-1) ...
+Setting up libpipeline1:amd64 (1.2.1-1) ...
+Setting up libasprintf0c2:amd64 (0.18.1.1-9) ...
+Setting up libmagic1:amd64 (5.11-1) ...
+Setting up libpcre3:amd64 (1:8.30-5) ...
+Setting up libxml2:amd64 (2.8.0+dfsg1-4) ...
+Setting up libffi5:amd64 (3.0.10-3) ...
+Setting up libglib2.0-0:amd64 (2.32.3-1) ...
+No schema files found: doing nothing.
+Setting up libcroco3:amd64 (0.6.5-1) ...
+Setting up libunistring0:amd64 (0.9.3-5) ...
+Setting up libgettextpo0:amd64 (0.18.1.1-9) ...
+Setting up groff-base (1.21-7) ...
+Setting up man-db (2.6.2-1) ...
Building database of manual pages ...
-Setting up libmagic1 (5.04-5+b1) ...
-Setting up file (5.04-5+b1) ...
-Setting up gettext-base (0.18.1.1-3) ...
-Setting up libpcre3 (8.12-3) ...
-Setting up libxml2 (2.7.8.dfsg-2+b1) ...
+Setting up file (5.11-1) ...
+Setting up gettext-base (0.18.1.1-9) ...
Setting up html2text (1.3.2a-15) ...
-Setting up libglib2.0-0 (2.28.6-1) ...
-No schema files found: doing nothing.
-Setting up libcroco3 (0.6.2-1) ...
-Setting up libunistring0 (0.9.3-4) ...
-Setting up gettext (0.18.1.1-3) ...
+Setting up gettext (0.18.1.1-9) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
-Setting up po-debconf (1.0.16+nmu1) ...
-Setting up debhelper (8.1.6) ...
-Setting up cdbs (0.4.93) ...
-Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
+Setting up po-debconf (1.0.16+nmu2) ...
+Setting up debhelper (9.20120608) ...
+Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-12) ...
Setting up sbuild-build-depends-tabix-dummy (0.invalid.0) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.21.51.20110421-4 dpkg-dev_1.16.0.3 g++-4.6_4.6.0-7 gcc-4.6_4.6.0-7 libc6-dev_2.13-2 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 linux-libc-dev_2.6.38-5
-Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.51.20110421-4 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.93 coreutils_8.5-1 cpp_4:4.6.0-5 cpp-4.6_4.6.0-7 dash_0.5.5.1-7.4 debconf_1.5.39 debconf-i18n_1.5.39 debfoster_2.7-1.1 debhelper_8.1.6 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4 e2fsprogs_1.41.12-4 fakeroot_1.15.1-1 file_5.04-5+b1 findutils_4.4.2-1+b1 g++_4:4.6.0-5 g++-4.6_4.6.0-7 gcc_4:4.6.0-5 gcc-4.6_4.6.0-7 gcc-4.6-base_4.6.0-7 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.2 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.13-2 libc-dev-bin_2.13-2 libc6_2.13-2 libc6-dev_2.13-2 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4 libcroco3_0.6.2-1 libdb4.7_4.7.25-19 libdb4.8_4.8.30-8 libdb5.1_5.1.25-10 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-7 libgdbm3_1.8.3-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-7 liblocale-gettext-perl_1.05-6+b1 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmpc2_0.9-3 libmpfr4_3.0.1-3 libncurses5_5.9-1 libpam-modules_1.1.2-3 libpam-runtime_1.1.2-3 libpam0g_1.1.2-3 libpcre3_8.12-3 libpipeline1_1.2.0-1 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-7 libreadline6_6.2-1 libselinux1_2.0.98-1+b1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libss2_1.41.12-4 libstdc++6_4.6.0-7 libstdc++6-4.6-dev_4.6.0-7 libswitch-perl_2.16-1 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libxml2_2.7.8.dfsg-2+b1 linux-libc-dev_2.6.38-5 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.12.3-6 perl-base_5.12.3-6 perl-modules_5.12.3-6 po-debconf_1.0.16+nmu1 readline-common_6.2-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tabix-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.2 sysvinit_2.88dsf-13.2 sysvinit-utils_2.88dsf-13.2 tar_1.25-3 tzdata_2011g-1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
+Kernel: Linux 3.2.0-2-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1
+Package versions: apt_0.9.7 base-files_6.11 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasprintf0c2_0.18.1.1-9 libattr1_1:2.4.46-8 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libdb5.1_5.1.29-4 libdpkg-perl_1.16.4.3 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgdbm3_1.8.3-11 libgettextpo0_0.18.1.1-9 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgomp1_4.7.1-1 libgpm2_1.20.4-6 libitm1_4.7.1-1 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libncurses5_5.9-9 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpcre3_1:8.30-5 libpipeline1_1.2.1-1 libpng12-0_1.2.49-1 libpod-plainer-perl_1.03-1 libquadmath0_4.7.1-1 libreadline6_6.2-8 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libss2_1.42.4-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libxml2_2.8.0+dfsg1-4 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-33 ncurses-base_5.9-9 ncurses-bin_5.9-9 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tabix-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tzdata_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -181,118 +193,143 @@ Package versions: apt_0.8.14.1 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binu
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (tabix_0.2.5-1.dsc)
-dpkg-source: info: extracting tabix in tabix-0.2.5
-dpkg-source: info: unpacking tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: unpacking tabix_0.2.5-1.debian.tar.gz
+dpkg-source: warning: extracting unsigned source package (tabix_0.2.6-1.dsc)
+dpkg-source: info: extracting tabix in tabix-0.2.6
+dpkg-source: info: unpacking tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: unpacking tabix_0.2.6-1.debian.tar.gz
+dpkg-source: info: applying use-dpkg-buildflags.patch
Check disc space
────────────────
Sufficient free space for build
+User Environment
+────────────────
+
+HOME=/sbuild-nonexistent
+LOGNAME=charles
+PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
+SCHROOT_CHROOT_NAME=sid-amd64-sbuild
+SCHROOT_COMMAND=env
+SCHROOT_GID=1000
+SCHROOT_GROUP=charles
+SCHROOT_SESSION_ID=sid-amd64-sbuild-68fe9f97-1ca3-4f95-940c-68dc727fbb6b
+SCHROOT_UID=31051
+SCHROOT_USER=charles
+SHELL=/bin/sh
+TERM=xterm
+USER=charles
+USERNAME=charles
+
dpkg-buildpackage
─────────────────
-dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
-dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
-dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package tabix
-dpkg-buildpackage: source version 0.2.5-1
+dpkg-buildpackage: source version 0.2.6-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
- dpkg-source --before-build tabix-0.2.5
+ dpkg-source --before-build tabix-0.2.6
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
-test -x debian/rules
-dh_testroot
-rm -f debian/stamp-makefile-build debian/stamp-makefile-install
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" -k clean
-make[1]: Entering directory `/«BUILDDIR»/tabix-0.2.5'
-make[2]: Entering directory `/«BUILDDIR»/tabix-0.2.5'
+dh clean
+ dh_testdir
+ dh_auto_clean
+make[1]: Entering directory `/«PKGBUILDDIR»'
+make[2]: Entering directory `/«PKGBUILDDIR»'
rm -fr gmon.out *.o a.out *.dSYM tabix bgzip *~ *.a tabix.aux tabix.log tabix.pdf *.class libtabix.*.dylib libtabix.so*
-make[2]: Leaving directory `/«BUILDDIR»/tabix-0.2.5'
-make[1]: Leaving directory `/«BUILDDIR»/tabix-0.2.5'
-dh_clean
- dpkg-source -b tabix-0.2.5
+make[2]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+ dh_clean
+ dpkg-source -b tabix-0.2.6
dpkg-source: info: using source format `3.0 (quilt)'
-dpkg-source: info: building tabix using existing ./tabix_0.2.5.orig.tar.bz2
-dpkg-source: info: building tabix in tabix_0.2.5-1.debian.tar.gz
-dpkg-source: info: building tabix in tabix_0.2.5-1.dsc
+dpkg-source: info: building tabix using existing ./tabix_0.2.6.orig.tar.bz2
+dpkg-source: info: building tabix in tabix_0.2.6-1.debian.tar.gz
+dpkg-source: info: building tabix in tabix_0.2.6-1.dsc
debian/rules build
-test -x debian/rules
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-/usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS=""
-make[1]: Entering directory `/«BUILDDIR»/tabix-0.2.5'
-make[2]: Entering directory `/«BUILDDIR»/tabix-0.2.5'
-gcc -c -g -O2 -g -O2 -Wall -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzf.c -o bgzf.o
-bgzf.c: In function 'bgzf_close':
-bgzf.c:630:8: warning: variable 'count' set but not used [-Wunused-but-set-variable]
-gcc -c -g -O2 -g -O2 -Wall -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE kstring.c -o kstring.o
-gcc -c -g -O2 -g -O2 -Wall -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE knetfile.c -o knetfile.o
-gcc -c -g -O2 -g -O2 -Wall -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE index.c -o index.o
-gcc -c -g -O2 -g -O2 -Wall -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bedidx.c -o bedidx.o
-ar -cru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
-gcc -c -g -O2 -g -O2 -Wall -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE main.c -o main.o
-gcc -g -O2 -g -O2 -Wall -o tabix main.o -lm -lz -L. -ltabix
-gcc -c -g -O2 -g -O2 -Wall -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE bgzip.c -o bgzip.o
-gcc -g -O2 -g -O2 -Wall -o bgzip bgzip.o bgzf.o knetfile.o -lz
-make[2]: Leaving directory `/«BUILDDIR»/tabix-0.2.5'
-make[1]: Leaving directory `/«BUILDDIR»/tabix-0.2.5'
-touch debian/stamp-makefile-build
-DEB_MAKE_CHECK_TARGET unset, not running checks
+dh build
+ dh_testdir
+ dh_auto_configure
+ dh_auto_build
+make[1]: Entering directory `/«PKGBUILDDIR»'
+make[2]: Entering directory `/«PKGBUILDDIR»'
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
+knetfile.c: In function 'khttp_connect_file':
+knetfile.c:418:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
+knetfile.c: In function 'kftp_send_cmd':
+knetfile.c:239:2: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
+ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o tabix main.o -L. -ltabix -lm -lz
+gcc -c -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
+bgzip.c: In function 'main':
+bgzip.c:198:9: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
+bgzip.c: In function 'write_open':
+bgzip.c:57:9: warning: ignoring return value of 'scanf', declared with attribute warn_unused_result [-Wunused-result]
+gcc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -fPIC -Wl,-z,relro -o bgzip bgzip.o bgzf.o knetfile.o -lz
+make[2]: Leaving directory `/«PKGBUILDDIR»'
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+ dh_auto_test
fakeroot debian/rules binary
-test -x debian/rules
-dh_testroot
-dh_prep
-dh_installdirs -A
-mkdir -p "."
-/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING: DEB_COMPRESS_EXCLUDE is a deprecated variable
-DEB_MAKE_CHECK_TARGET unset, not running checks
-DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
-Adding cdbs dependencies to debian/tabix.substvars
-dh_installdirs -ptabix
-dh_installdocs -ptabix ./NEWS
-dh_installexamples -ptabix
-dh_installman -ptabix
-dh_installinfo -ptabix
-dh_installmenu -ptabix
-dh_installcron -ptabix
-dh_installinit -ptabix
-dh_installdebconf -ptabix
-dh_installemacsen -ptabix
-dh_installcatalogs -ptabix
-dh_installpam -ptabix
-dh_installlogrotate -ptabix
-dh_installlogcheck -ptabix
-dh_installgsettings -ptabix
-dh_installchangelogs -ptabix ./ChangeLog
-dh_installudev -ptabix
-dh_lintian -ptabix
-dh_bugfiles -ptabix
-dh_install -ptabix
-dh_link -ptabix
-dh_installmime -ptabix
-dh_strip -ptabix
-dh_compress -ptabix -X .tbi
-dh_fixperms -ptabix
-dh_makeshlibs -ptabix
-dh_installdeb -ptabix
-dh_perl -ptabix
-dh_shlibdeps -ptabix
-dpkg-shlibdeps: warning: dependency on libm.so.6 could be avoided if "debian/tabix/usr/bin/tabix" were not uselessly linked against it (they use none of its symbols).
-dh_gencontrol -ptabix
-dh_md5sums -ptabix
-dh_builddeb -ptabix
-dpkg-deb: building package `tabix' in `../tabix_0.2.5-1_amd64.deb'.
- dpkg-genchanges >../tabix_0.2.5-1_amd64.changes
+dh binary
+ dh_testroot
+ dh_prep
+ dh_installdirs
+ dh_auto_install
+ dh_install
+ dh_installdocs
+ dh_installchangelogs
+ dh_installexamples
+ dh_installman
+ dh_installcatalogs
+ dh_installcron
+ dh_installdebconf
+ dh_installemacsen
+ dh_installifupdown
+ dh_installinfo
+ dh_installinit
+ dh_installmenu
+ dh_installmime
+ dh_installmodules
+ dh_installlogcheck
+ dh_installlogrotate
+ dh_installpam
+ dh_installppp
+ dh_installudev
+ dh_installwm
+ dh_installxfonts
+ dh_installgsettings
+ dh_bugfiles
+ dh_ucf
+ dh_lintian
+ dh_gconf
+ dh_icons
+ dh_perl
+ dh_usrlocal
+ dh_link
+ debian/rules override_dh_compress
+make[1]: Entering directory `/«PKGBUILDDIR»'
+dh_compress --exclude=.tbi
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+ dh_fixperms
+ dh_strip
+ dh_makeshlibs
+ dh_shlibdeps
+dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tabix/usr/bin/tabix was not linked against libm.so.6 (it uses none of the library's symbols).
+ dh_installdeb
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+dpkg-deb: building package `tabix' in `../tabix_0.2.6-1_amd64.deb'.
+ dpkg-genchanges >../tabix_0.2.6-1_amd64.changes
dpkg-genchanges: including full source code in upload
- dpkg-source --after-build tabix-0.2.5
+ dpkg-source --after-build tabix-0.2.6
dpkg-buildpackage: full upload (original source is included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110510-1943
+Build finished at 20120622-1324
Finished
────────
@@ -304,15 +341,15 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-1_amd64.changes:
+tabix_0.2.6-1_amd64.changes:
────────────────────────────
Format: 1.8
-Date: Tue, 10 May 2011 19:42:07 +0900
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: source amd64
-Version: 0.2.5-1
+Version: 0.2.6-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -320,44 +357,46 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
Changes:
- tabix (0.2.5-1) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * New upstream release.
- * Added debian/README.test to explain how to test tabix and bgzip.
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
Checksums-Sha1:
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- c33791c2c80bb6abb87c8e62f2ebc605ea47ce07 54196 tabix_0.2.5.orig.tar.bz2
- bc7ec2378b90edf5205f14eb0c688bad07d59478 3039 tabix_0.2.5-1.debian.tar.gz
- e652b31f3f6ea6f4e853fda9b6da237e2880b7df 58022 tabix_0.2.5-1_amd64.deb
+ ff3e2a55d6020bc5053e7eefca9889fed393f499 1090 tabix_0.2.6-1.dsc
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- 5f28a242f5a0bd3f4d3fcb3d567fdddf05435a2a2b44c56407c1f518cff2b224 58022 tabix_0.2.5-1_amd64.deb
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+ ce1de7158d370985f6eaf47c1ed0d285a0b980e023ae758d43ad622ad04d0e4a 4868 tabix_0.2.6-1.debian.tar.gz
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Files:
- 5bfd768150ad80abdc1a0173b428c3c5 996 science optional tabix_0.2.5-1.dsc
- 1fb65a3f79a81681ad6d5012498d2d51 54196 science optional tabix_0.2.5.orig.tar.bz2
- c3e2ff5d60bf1d50d6a77342151366b0 3039 science optional tabix_0.2.5-1.debian.tar.gz
- b793f03956cb0c785b0aed82ceb403bf 58022 science optional tabix_0.2.5-1_amd64.deb
+ 80639081f7f61b4a5aa8477a37a4da8a 1090 science optional tabix_0.2.6-1.dsc
+ 36a61ceac2f5bed36018434282bbcc5d 54403 science optional tabix_0.2.6.orig.tar.bz2
+ c55a38753a42388456566e0226b431ee 4868 science optional tabix_0.2.6-1.debian.tar.gz
+ 8e1d8b99def12dfc42d0d01065ebb8d8 60518 science optional tabix_0.2.6-1_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-tabix_0.2.5-1_amd64.deb
+tabix_0.2.6-1_amd64.deb
───────────────────────
new debian package, version 2.0.
- size 58022 bytes: control archive= 995 bytes.
- 785 bytes, 16 lines control
+ size 60518 bytes: control archive=992 bytes.
+ 780 bytes, 16 lines control
653 bytes, 10 lines md5sums
Package: tabix
- Version: 0.2.5-1
+ Version: 0.2.6-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 164
- Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3.dfsg)
+ Installed-Size: 148
+ Depends: libc6 (>= 2.7), zlib1g (>= 1:1.2.3.3)
Section: science
Priority: optional
Homepage: http://samtools.sourceforge.net/tabix.shtml
@@ -369,26 +408,26 @@ tabix_0.2.5-1_amd64.deb
chromosomal coordinates. Fast data retrieval also works over network if an URI
is given as a file name.
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./usr/
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./usr/bin/
--rwxr-xr-x root/root 65408 2011-05-10 19:43 ./usr/bin/tabix
--rwxr-xr-x root/root 25752 2011-05-10 19:43 ./usr/bin/bgzip
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./usr/share/
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./usr/share/man/man1/
--rw-r--r-- root/root 1834 2011-05-10 19:43 ./usr/share/man/man1/tabix.1.gz
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./usr/share/doc/tabix/
-drwxr-xr-x root/root 0 2011-05-10 19:43 ./usr/share/doc/tabix/examples/
--rw-r--r-- root/root 259 2011-04-11 04:21 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
--rw-r--r-- root/root 3778 2010-12-09 02:34 ./usr/share/doc/tabix/examples/example.gtf.gz
--rw-r--r-- root/root 3487 2011-04-11 04:21 ./usr/share/doc/tabix/changelog.gz
--rw-r--r-- root/root 1169 2011-04-11 04:21 ./usr/share/doc/tabix/NEWS.gz
--rw-r--r-- root/root 2062 2011-05-10 19:40 ./usr/share/doc/tabix/README.test
--rw-r--r-- root/root 1473 2011-05-10 18:40 ./usr/share/doc/tabix/copyright
--rw-r--r-- root/root 322 2011-05-10 19:42 ./usr/share/doc/tabix/changelog.Debian.gz
-lrwxrwxrwx root/root 0 2011-05-10 19:43 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./usr/
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./usr/bin/
+-rwxr-xr-x root/root 68296 2012-06-22 13:24 ./usr/bin/tabix
+-rwxr-xr-x root/root 27104 2012-06-22 13:24 ./usr/bin/bgzip
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./usr/share/man/
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./usr/share/man/man1/
+-rw-r--r-- root/root 1834 2012-06-22 13:24 ./usr/share/man/man1/tabix.1.gz
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./usr/share/doc/tabix/
+drwxr-xr-x root/root 0 2012-06-22 13:24 ./usr/share/doc/tabix/examples/
+-rw-r--r-- root/root 259 2012-06-18 19:38 ./usr/share/doc/tabix/examples/example.gtf.gz.tbi
+-rw-r--r-- root/root 3778 2012-06-18 19:38 ./usr/share/doc/tabix/examples/example.gtf.gz
+-rw-r--r-- root/root 3487 2012-06-18 19:38 ./usr/share/doc/tabix/changelog.gz
+-rw-r--r-- root/root 1169 2012-06-18 19:38 ./usr/share/doc/tabix/NEWS.gz
+-rw-r--r-- root/root 2160 2012-06-22 13:12 ./usr/share/doc/tabix/README.test
+-rw-r--r-- root/root 1546 2012-06-22 12:45 ./usr/share/doc/tabix/copyright
+-rw-r--r-- root/root 914 2012-06-22 13:14 ./usr/share/doc/tabix/changelog.Debian.gz
+lrwxrwxrwx root/root 0 2012-06-22 13:24 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -396,76 +435,40 @@ lrwxrwxrwx root/root 0 2011-05-10 19:43 ./usr/share/man/man1/bgzip.1.gz
└──────────────────────────────────────────────────────────────────────────────┘
+lintian
+───────
+
+W: tabix source: unknown-field-in-dsc testsuite
+W: tabix: manpage-has-errors-from-man usr/share/man/man1/tabix.1.gz `R' is a string (producing the registered sign), not a macro.
+I: tabix: hyphen-used-as-minus-sign usr/share/man/man1/tabix.1.gz:101
+I: tabix: hyphen-used-as-minus-sign usr/share/man/man1/tabix.1.gz:103
+
+I: Lintian run was successful.
+
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /«CHROOT»/«BUILDDIR»
-Reading package lists...
-Building dependency tree...
-Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
-Reading package lists...
-Building dependency tree...
-Reading state information...
-The following packages will be REMOVED:
- bsdmainutils* cdbs* debhelper* file* gettext* gettext-base* groff-base*
- html2text* intltool-debian* libcroco3* libglib2.0-0* libmagic1* libpcre3*
- libpipeline1* libunistring0* libxml2* man-db* po-debconf*
- sbuild-build-depends-core-dummy* sbuild-build-depends-tabix-dummy*
- zlib1g-dev*
-0 upgraded, 0 newly installed, 21 to remove and 0 not upgraded.
-After this operation, 27.8 MB disk space will be freed.
-(Reading database ... 12157 files and directories currently installed.)
-Removing sbuild-build-depends-tabix-dummy ...
-Removing cdbs ...
-Removing debhelper ...
-Removing man-db ...
-Purging configuration files for man-db ...
-Removing bsdmainutils ...
-Purging configuration files for bsdmainutils ...
-Removing file ...
-Removing po-debconf ...
-Removing intltool-debian ...
-Removing gettext ...
-Removing gettext-base ...
-Removing groff-base ...
-Purging configuration files for groff-base ...
-Removing html2text ...
-Purging configuration files for html2text ...
-Removing libcroco3 ...
-Purging configuration files for libcroco3 ...
-Removing libglib2.0-0 ...
-Purging configuration files for libglib2.0-0 ...
-Removing libmagic1 ...
-Purging configuration files for libmagic1 ...
-Removing libpcre3 ...
-Purging configuration files for libpcre3 ...
-Removing libpipeline1 ...
-Purging configuration files for libpipeline1 ...
-Removing libunistring0 ...
-Purging configuration files for libunistring0 ...
-Removing libxml2 ...
-Purging configuration files for libxml2 ...
-Removing sbuild-build-depends-core-dummy ...
-Removing zlib1g-dev ...
+Purging /«BUILDDIR»
+Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 1780
-Build-Time: 6
+Build-Space: 2080
+Build-Time: 8
Distribution: unstable
-Install-Time: 23
-Job: tabix_0.2.5-1.dsc
+Install-Time: 16
+Job: tabix_0.2.6-1.dsc
+Lintian: pass
Package: tabix
-Package-Time: 39
-Source-Version: 0.2.5-1
-Space: 1780
+Package-Time: 31
+Source-Version: 0.2.6-1
+Space: 2080
Status: successful
-Version: 0.2.5-1
+Version: 0.2.6-1
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110510-1943
-Build needed 00:00:39, 1780k disc space
+Finished at 20120622-1324
+Build needed 00:00:31, 2080k disc space
diff --git a/changes b/changes
index e7d3589..11909c5 100644
--- a/changes
+++ b/changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Tue, 10 May 2011 19:42:07 +0900
+Date: Fri, 22 Jun 2012 13:14:27 +0900
Source: tabix
Binary: tabix
Architecture: source amd64
-Version: 0.2.5-1
+Version: 0.2.6-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,40 +14,42 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
tabix - generic indexer for TAB-delimited genome position files
Changes:
- tabix (0.2.5-1) unstable; urgency=low
+ tabix (0.2.6-1) unstable; urgency=low
.
- * New upstream release.
- * Added debian/README.test to explain how to test tabix and bgzip.
+ 60eb374 Imported Upstream version 0.2.6
+ 9de2ad5 Removed patches applied or obsoleted upstream.
+ 2836b51 Refreshed hardening patch.
+ 7677e45 Regression tests for autopkgtest.
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- b793f03956cb0c785b0aed82ceb403bf 58022 science optional tabix_0.2.5-1_amd64.deb
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+ 36a61ceac2f5bed36018434282bbcc5d 54403 science optional tabix_0.2.6.orig.tar.bz2
+ c55a38753a42388456566e0226b431ee 4868 science optional tabix_0.2.6-1.debian.tar.gz
+ 8e1d8b99def12dfc42d0d01065ebb8d8 60518 science optional tabix_0.2.6-1_amd64.deb
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diff --git a/dsc b/dsc
index d40ce14..2aaf90b 100644
--- a/dsc
+++ b/dsc
@@ -5,39 +5,42 @@ Format: 3.0 (quilt)
Source: tabix
Binary: tabix
Architecture: any
-Version: 0.2.5-1
+Version: 0.2.6-1
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>
+Uploaders: Charles Plessy <plessy at debian.org>, Andreas Tille <tille at debian.org>
Dm-Upload-Allowed: yes
Homepage: http://samtools.sourceforge.net/tabix.shtml
-Standards-Version: 3.9.2
+Standards-Version: 3.9.3
Vcs-Browser: http://git.debian.org/?p=debian-med/tabix.git
Vcs-Git: git://git.debian.org/debian-med/tabix.git
-Build-Depends: cdbs, debhelper (>= 8), zlib1g-dev
+Build-Depends: debhelper (>= 9), zlib1g-dev
+Package-List:
+ tabix deb science optional
Checksums-Sha1:
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- bc7ec2378b90edf5205f14eb0c688bad07d59478 3039 tabix_0.2.5-1.debian.tar.gz
+ 4f0cac0da585abddc222956cac1b6e508ca1c49e 54403 tabix_0.2.6.orig.tar.bz2
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Checksums-Sha256:
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- 1fb65a3f79a81681ad6d5012498d2d51 54196 tabix_0.2.5.orig.tar.bz2
- c3e2ff5d60bf1d50d6a77342151366b0 3039 tabix_0.2.5-1.debian.tar.gz
+ 36a61ceac2f5bed36018434282bbcc5d 54403 tabix_0.2.6.orig.tar.bz2
+ c55a38753a42388456566e0226b431ee 4868 tabix_0.2.6-1.debian.tar.gz
+Testsuite: autopkgtest
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diff --git a/upload b/upload
new file mode 100644
index 0000000..8e76ae4
--- /dev/null
+++ b/upload
@@ -0,0 +1,6 @@
+u tabix_0.2.6-1_amd64.deb ftp.upload.debian.org Fri Jun 22 13:39:32 2012
+u tabix_0.2.6-1.debian.tar.gz ftp.upload.debian.org Fri Jun 22 13:39:33 2012
+u tabix_0.2.6.orig.tar.bz2 ftp.upload.debian.org Fri Jun 22 13:39:35 2012
+u tabix_0.2.6-1.dsc ftp.upload.debian.org Fri Jun 22 13:39:36 2012
+u tabix_0.2.6-1_amd64.changes ftp.upload.debian.org Fri Jun 22 13:39:37 2012
+s tabix_0.2.6-1_amd64.changes ftp.upload.debian.org Fri Jun 22 13:39:37 2012
--
Generic indexer for TAB-delimited genome position files.
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