[med-svn] [trinityrnaseq] 01/03: use system jellyfish binary

[Michael Crusoe]

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misterc-guest pushed a commit to branch master
in repository trinityrnaseq.

commit f8698bf1e420c4673e9740f07efa7b37ecd5c718
Author: Michael R. Crusoe <mcrusoe at msu.edu>
Date:   Sun Feb 1 04:37:52 2015 -0500

    use system jellyfish binary
---
 debian/patches/jellyfish-path | 11 +++++++++++
 debian/patches/series         |  1 +
 2 files changed, 12 insertions(+)

diff --git a/debian/patches/jellyfish-path b/debian/patches/jellyfish-path
new file mode 100644
index 0000000..8f76187
--- /dev/null
+++ b/debian/patches/jellyfish-path
@@ -0,0 +1,11 @@
+--- trinityrnaseq.orig/Trinity
++++ trinityrnaseq/Trinity
+@@ -481,7 +481,7 @@
+ my $INCHWORM_DIR = "$ROOTDIR/Inchworm/bin/";
+ my $CHRYSALIS_DIR = "$ROOTDIR/Chrysalis";
+ my $BUTTERFLY_DIR = "$ROOTDIR/Butterfly";
+-my $JELLYFISH_DIR = "$ROOTDIR/trinity-plugins/jellyfish";
++my $JELLYFISH_DIR = "/usr";
+ my $FASTOOL_DIR = "$ROOTDIR/trinity-plugins/fastool";
+ my $COLLECTL_DIR = "$ROOTDIR/trinity-plugins/collectl/bin";
+ my $COREUTILS_DIR = "$ROOTDIR/trinity-plugins/coreutils/bin";
diff --git a/debian/patches/series b/debian/patches/series
index fb0943e..7bbb478 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,3 +1,4 @@
 chrysalis-make-tweak
 noExitTester
 chrysalis-makefile-auto
+jellyfish-path

-- 
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