[med-svn] [trinityrnaseq] 02/03: follow original layout

[Michael Crusoe]

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misterc-guest pushed a commit to branch master
in repository trinityrnaseq.

commit 8332cc12badc3a69eb066557434036aeadc2012e
Author: Michael R. Crusoe <mcrusoe at msu.edu>
Date:   Sun Feb 1 08:03:24 2015 -0500

    follow original layout
---
 debian/rules                 |  4 +++-
 debian/trinityrnaseq.install | 30 +++++++++++++++---------------
 2 files changed, 18 insertions(+), 16 deletions(-)

diff --git a/debian/rules b/debian/rules
index 6047a72..2ad6f7e 100755
--- a/debian/rules
+++ b/debian/rules
@@ -18,7 +18,8 @@ SOURCE_DIRECTORIES = Inchworm Chrysalis trinity-plugins/fastool trinity-plugins/
 override_dh_auto_configure:
 	for target in ${SOURCE_DIRECTORIES}; do dh_autotools-dev_updateconfig \
 		-O--sourcedirectory=$${target}; dh_auto_configure \
-		--sourcedirectory=$${target} -- --prefix=/usr/lib/trinityrnaseq; done
+		--sourcedirectory=$${target} -- \
+		--prefix=/usr/lib/trinityrnaseq/$${target}; done
 
 override_dh_auto_build:
 	for target in ${SOURCE_DIRECTORIES}; do dh_auto_build \
@@ -32,6 +33,7 @@ override_dh_auto_clean:
 override_dh_auto_install:
 	for target in ${SOURCE_DIRECTORIES}; do dh_auto_install \
 		-O--sourcedirectory=$${target}; done
+
 override_dh_install:
 	dh_install
 	find debian/trinityrnaseq -name '*.p?' | xargs sed -i \
diff --git a/debian/trinityrnaseq.install b/debian/trinityrnaseq.install
index ffb9d99..76e96ef 100644
--- a/debian/trinityrnaseq.install
+++ b/debian/trinityrnaseq.install
@@ -1,20 +1,20 @@
 debian/bin/* /usr/bin
 trinity-plugins/fastool/fastool /usr/lib/trinityrnaseq/trinity-plugins/fastool/
-Chrysalis/TranscriptomeFromVaryK /usr/lib/trinityrnaseq
-Chrysalis/RunButterfly /usr/lib/trinityrnaseq/
-Chrysalis/ReadsToTranscripts_MPI_chang /usr/lib/trinityrnaseq/
-Chrysalis/ReadsToTranscripts_MPI /usr/lib/trinityrnaseq/
-Chrysalis/ReadsToTranscripts /usr/lib/trinityrnaseq/
-Chrysalis/QuantifyGraph /usr/lib/trinityrnaseq/
-Chrysalis/JoinTransByPairs /usr/lib/trinityrnaseq/
-Chrysalis/IsoformAugment /usr/lib/trinityrnaseq/
-Chrysalis/GraphFromFasta_MPI /usr/lib/trinityrnaseq/
-Chrysalis/GraphFromFasta /usr/lib/trinityrnaseq/
-Chrysalis/CreateIwormFastaBundle /usr/lib/trinityrnaseq/
-Chrysalis/Chrysalis /usr/lib/trinityrnaseq/
-Chrysalis/BreakTransByPairs /usr/lib/trinityrnaseq/
-Chrysalis/checkLock /usr/lib/trinityrnaseq/
+Chrysalis/TranscriptomeFromVaryK /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/RunButterfly /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/ReadsToTranscripts_MPI_chang /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/ReadsToTranscripts_MPI /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/ReadsToTranscripts /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/QuantifyGraph /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/JoinTransByPairs /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/IsoformAugment /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/GraphFromFasta_MPI /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/GraphFromFasta /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/CreateIwormFastaBundle /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/Chrysalis /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/BreakTransByPairs /usr/lib/trinityrnaseq/Chrysalis/
+Chrysalis/checkLock /usr/lib/trinityrnaseq/Chrysalis/
 Trinity /usr/lib/trinityrnaseq
 PerlLib /usr/lib/trinityrnaseq/
 sample_data /usr/lib/trinityrnaseq/
-
+util /usr/lib/trinityrnaseq/

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