[med-svn] [gatk] branch master updated (04e6d4e -> 98daeb4)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository gatk.

      from  04e6d4e   Citation
       new  17f3a2a   Remove binary *.so file
       new  fcb41b4   Aftr running mh_make (which unfortunately finally failed :-()
       new  61003fa   Imported Upstream version 3.3+dfsg
       new  628a0a6   Merge tag 'upstream/3.3+dfsg'
       new  98daeb4   Some polishing - but no sensible build is happening

The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog                                   |   2 +-
 debian/control                                     |   3 +-
 debian/copyright                                   |   1 +
 debian/doc-base                                    |  20 -----------
 debian/gatk.poms                                   |  38 ++++++++++++++++++++
 debian/maven.cleanIgnoreRules                      |   1 +
 debian/maven.ignoreRules                           |  32 +++++++++++++++++
 debian/maven.publishedRules                        |   1 +
 debian/maven.rules                                 |  18 ++++++++++
 debian/patches/only-free-parts.patch               |  39 +++++++++++++++++++++
 debian/patches/series                              |   1 +
 debian/rules                                       |   7 ++--
 debian/watch                                       |   3 +-
 .../gatk/utils/pairhmm/libVectorLoglessPairHMM.so  | Bin 479380 -> 0 bytes
 14 files changed, 140 insertions(+), 26 deletions(-)
 delete mode 100644 debian/doc-base
 create mode 100644 debian/gatk.poms
 create mode 100644 debian/maven.cleanIgnoreRules
 create mode 100644 debian/maven.ignoreRules
 create mode 100644 debian/maven.publishedRules
 create mode 100644 debian/maven.rules
 create mode 100644 debian/patches/only-free-parts.patch
 create mode 100644 debian/patches/series
 delete mode 100644 public/gatk-utils/src/main/resources/org/broadinstitute/gatk/utils/pairhmm/libVectorLoglessPairHMM.so

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