[med-svn] [gatk] 01/05: Remove binary *.so file

[Andreas Tille]

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tille pushed a commit to branch master
in repository gatk.

commit 17f3a2a5a825b2f37ab62f26510301eaee363910
Author: Andreas Tille <tille at debian.org>
Date:   Fri Mar 27 11:23:53 2015 +0100

    Remove binary *.so file
---
 debian/changelog | 2 +-
 debian/copyright | 1 +
 debian/rules     | 7 ++++---
 debian/watch     | 3 ++-
 4 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index b4a270e..fbf19c2 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,4 +1,4 @@
-gatk (3.3-1) UNRELEASED; urgency=low
+gatk (3.3+dfsg-1) UNRELEASED; urgency=low
 
   * Initial release (Closes: #<bug>)
 
diff --git a/debian/copyright b/debian/copyright
index d4d4798..3b788fa 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,6 +1,7 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: GATK
 Source: https://github.com/broadgsa/gatk/
+Files-Excluded: *.so
 
 Files: *
 Copyright: 2012-2014 The Broad Institute
diff --git a/debian/rules b/debian/rules
index 58ec00b..d901584 100755
--- a/debian/rules
+++ b/debian/rules
@@ -16,8 +16,9 @@
 # and use what is set there.  Any hint whether dh might set variables in
 # a similar manner are welcome.
 
+JAVA_HOME=/usr/lib/jvm/default-java
 %:
-	dh $@
+	dh $@ --with javahelper
 
-#get-orig-source:
-#	. debian/get-orig-source
+get-orig-source:
+	uscan --verbose --force-download --repack --compression xz
diff --git a/debian/watch b/debian/watch
index dbcdf29..d08fd59 100644
--- a/debian/watch
+++ b/debian/watch
@@ -1,3 +1,4 @@
 version=3
 
-https://github.com/broadgsa/gatk/releases .*/archive/(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)
+opts="repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g" \
+  https://github.com/broadgsa/gatk/releases .*/archive/(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)

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