[med-svn] [python-cobra] branch debian/jessie-backports updated (a4fafbb -> 282e80f)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a change to branch debian/jessie-backports
in repository python-cobra.

      from  a4fafbb   python-cobra (0.4.1-1~bpo8+1) jessie-backports; urgency=medium
      adds  4111c2e   Globally set locale to C.UTF-8
      adds  6819885   make build reproducible
      adds  9c687a2   bump Standards-Version
      adds  191cd73   Imported Upstream version 0.4.2~b1
      adds  6d86bd8   Merge tag 'upstream/0.4.2_b1'
      adds  c4453ed   Refresh patches
      adds  9c69b0c   Use Make to drive autopkgtests and document some rationale.
      adds  046737a   Clean up d/control and d/rules
      adds  de55331   Include jsonschema and pandas to run additional CI tests
      adds  03e31a5   releasing package python-cobra version 0.4.2~b1-1
       new  44e1723   Merge tag 'debian/0.4.2_b1-1' into debian/jessie-backports
       new  282e80f   releasing package python-cobra version 0.4.2~b1-1~bpo8+1

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                           |   1 +
 INSTALL.md                           |  11 +--
 README.md                            |   7 +-
 appveyor.yml                         |  20 +++--
 appveyor/build_glpk.py               |   4 +-
 cobra/VERSION                        |   2 +-
 cobra/core/DictList.py               |   4 +-
 cobra/io/json.py                     |   4 +-
 cobra/io/mat.py                      |  10 ++-
 cobra/io/sbml.py                     |   5 ++
 cobra/manipulation/modify.py         |  52 +++++++++++-
 cobra/solvers/gurobi_solver.py       |   5 +-
 cobra/solvers/mosek.py               |   2 +
 cobra/test/flux_analysis.py          |  42 ++++++----
 cobra/test/manipulation.py           |  25 ++++++
 cobra/test/solvers.py                |   2 +-
 debian/changelog                     |  25 ++++++
 debian/control                       |  67 ++++++++-------
 debian/patches/reproducible.patch    |  15 ++++
 debian/patches/series                |   1 +
 debian/rules                         |   8 +-
 debian/tests/Makefile                |  13 +++
 debian/tests/control                 |  17 +++-
 documentation_builder/loopless.ipynb | 156 +++++++++++++++++++++++++----------
 ez_setup.py                          |  77 ++++++++++++-----
 setup.py                             |   4 +-
 26 files changed, 427 insertions(+), 152 deletions(-)
 create mode 100644 debian/patches/reproducible.patch
 create mode 100644 debian/tests/Makefile

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