[med-svn] [pbdagcon] 05/08: d/rules: update for changes to build system and dependencies

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a commit to branch master
in repository pbdagcon.

commit 3b309a69c4e22aa8dc70b1b1de9c88ea8f7ada4f
Author: Afif Elghraoui <afif at debian.org>
Date:   Sun Oct 23 19:38:56 2016 -0700

    d/rules: update for changes to build system and dependencies
---
 debian/control |  1 +
 debian/rules   | 18 ++++++++++++++----
 2 files changed, 15 insertions(+), 4 deletions(-)

diff --git a/debian/control b/debian/control
index 2e8ae4a..79bd525 100644
--- a/debian/control
+++ b/debian/control
@@ -6,6 +6,7 @@ Uploaders:
 	Afif Elghraoui <afif at debian.org>,
 Build-Depends:
 	debhelper (>= 9),
+	python,
 	libboost-dev,
 	libtclap-dev,
 	libpbdata-dev,
diff --git a/debian/rules b/debian/rules
index a48a3fd..e06ec6e 100755
--- a/debian/rules
+++ b/debian/rules
@@ -3,10 +3,20 @@
 #DH_VERBOSE = 1
 include /usr/share/dpkg/default.mk
 
-export boost := /usr/include/boost
-export BLASR := /usr/include/blasr
-export PBDATA := /usr/include/pbdata
-export gtest := /usr/src/gtest
+export GTEST_INCLUDE := /usr/src/gtest
+
+PBSEQ_BASE=/usr/include/pbseq
+export LIBBLASR_INC=$(PBSEQ_BASE)/alignment
+export LIBPBDATA_INC=$(PBSEQ_BASE)/pbdata
+export LIBPBIHDF_INC=$(PBSEQ_BASE)/hdf
+
+export DEB_CPPFLAGS_MAINT_APPEND = -I$(LIBBLASR_INC) -I$(LIBPBDATA_INC) -I$(LIBPBIHDF_INC)
 
 %:
 	dh $@ --parallel
+
+override_dh_auto_configure:
+	./configure.py --no-pbbam --shared
+
+override_dh_auto_test:
+	src/cpp/pbdagcon --help

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbdagcon.git