[med-svn] [pbdagcon] 06/08: Do not build dazcon for now (needs additional sources)

[Afif Elghraoui]

This is an automated email from the git hooks/post-receive script.

afif pushed a commit to branch master
in repository pbdagcon.

commit 42116d3fc8efa87cf11649d100cc7cb69aae3ea5
Author: Afif Elghraoui <afif at debian.org>
Date:   Sun Oct 23 19:40:15 2016 -0700

    Do not build dazcon for now (needs additional sources)
---
 debian/TODO                 |  1 +
 debian/patches/dazcon.patch | 16 ++++++++++++++++
 debian/patches/series       |  1 +
 3 files changed, 18 insertions(+)

diff --git a/debian/TODO b/debian/TODO
new file mode 100644
index 0000000..b781f2b
--- /dev/null
+++ b/debian/TODO
@@ -0,0 +1 @@
+* Bundle upstream's forks of DAZZDB and DALIGNER (as included in submodules) in order to build dazcon
diff --git a/debian/patches/dazcon.patch b/debian/patches/dazcon.patch
new file mode 100644
index 0000000..b5aa374
--- /dev/null
+++ b/debian/patches/dazcon.patch
@@ -0,0 +1,16 @@
+Description: Exclude dazcon from the build for now
+ The source tarball needs to bundle the PacBio fork of DALIGNER and DAZZDB
+ in order to build dazcon. We'll have to do that later.
+Author: Afif Elghraoui <afif at debian.org>
+Forwarded: not-needed
+--- pbdagcon.orig/src/cpp/makefile
++++ pbdagcon/src/cpp/makefile
+@@ -50,7 +50,7 @@
+ vpath DB.c ${DAZZ_DB_SRC}
+ vpath QV.c ${DAZZ_DB_SRC}
+ 
+-all: pbdagcon dazcon
++all: pbdagcon
+ 
+ # Technically does not need pbdata or blasr, but so what?
+ dazcon: $(COMMON_OBJECTS) $(DAZCON_OBJECTS)
diff --git a/debian/patches/series b/debian/patches/series
index a4675fc..8f61f3d 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1,2 @@
 compiler-flags.patch
+dazcon.patch

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/pbdagcon.git