[med-svn] [trnascan-se] branch master updated (602c562 -> ca28b8d)

[Steffen Möller]

This is an automated email from the git hooks/post-receive script.

moeller pushed a change to branch master
in repository trnascan-se.

      from  602c562   Added references to registries.
       new  dc9d5b7   New upstream version 1.23
       new  4cf3079   Updated version 1.23 from 'upstream/1.23'
       new  ca28b8d   upstream/metadata RRID->SciCrunch

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Archaea-BHB-noncan.cm     |  167 -
 ESELCinf-c.cm             |  384 ---
 FILES                     |    8 +-
 Makefile                  |   17 +-
 Manual.ps                 | 8019 ++++++++++++++++++---------------------------
 PSELCinf-c.cm             |  406 ---
 README                    |   51 +-
 Release.history           |   42 -
 TRNAinf-arch-3h-nc.cm     |  242 --
 TRNAinf-arch-5h-nc.cm     |  165 -
 TRNAinf-arch-c.cm         |  415 ---
 TRNAinf-arch-ns-c.cm      |  416 ---
 TRNAinf-bact-c.cm         |  415 ---
 TRNAinf-bact-ns-c.cm      |  416 ---
 TRNAinf-c.cm              |  403 ---
 TRNAinf-euk-c.cm          |  403 ---
 TRNAinf-euk-ns-c.cm       |  404 ---
 TRNAinf-ns-c.cm           |  404 ---
 debian/upstream/metadata  |    2 +-
 debug.c                   |    2 +-
 fasta2gsi.pl              |    0
 gnuregex.c                |    2 +-
 pavesi.c                  |    4 +-
 save.c                    |   33 +-
 scorestack.c              |    2 +-
 sqio.c                    |   66 +-
 sstofa.pl                 |    0
 tRNAscan-SE.src           | 4344 +++++++++++++++++++-----
 tRNAscanSE/CM.pm          | 2561 ---------------
 tRNAscanSE/Constants.pm   |  105 -
 tRNAscanSE/Eufind.pm      |  261 --
 tRNAscanSE/GeneticCode.pm |  291 --
 tRNAscanSE/LogFile.pm     |   87 -
 tRNAscanSE/Options.pm     |  668 ----
 tRNAscanSE/SS.pm          |  197 --
 tRNAscanSE/ScanResult.pm  |  657 ----
 tRNAscanSE/Sequence.pm    |  763 -----
 tRNAscanSE/Stats.pm       |  430 ---
 tRNAscanSE/Tscan.pm       |  393 ---
 tRNAscanSE/Utils.pm       |  175 -
 testrun.ref               |   16 +-
 trnascan.c                |   63 +-
 42 files changed, 6851 insertions(+), 17048 deletions(-)
 delete mode 100644 Archaea-BHB-noncan.cm
 delete mode 100644 ESELCinf-c.cm
 delete mode 100644 PSELCinf-c.cm
 delete mode 100644 TRNAinf-arch-3h-nc.cm
 delete mode 100644 TRNAinf-arch-5h-nc.cm
 delete mode 100644 TRNAinf-arch-c.cm
 delete mode 100644 TRNAinf-arch-ns-c.cm
 delete mode 100644 TRNAinf-bact-c.cm
 delete mode 100644 TRNAinf-bact-ns-c.cm
 delete mode 100644 TRNAinf-c.cm
 delete mode 100644 TRNAinf-euk-c.cm
 delete mode 100644 TRNAinf-euk-ns-c.cm
 delete mode 100644 TRNAinf-ns-c.cm
 mode change 100644 => 100755 fasta2gsi.pl
 mode change 100644 => 100755 sstofa.pl
 delete mode 100644 tRNAscanSE/CM.pm
 delete mode 100644 tRNAscanSE/Constants.pm
 delete mode 100644 tRNAscanSE/Eufind.pm
 delete mode 100644 tRNAscanSE/GeneticCode.pm
 delete mode 100644 tRNAscanSE/LogFile.pm
 delete mode 100644 tRNAscanSE/Options.pm
 delete mode 100644 tRNAscanSE/SS.pm
 delete mode 100644 tRNAscanSE/ScanResult.pm
 delete mode 100644 tRNAscanSE/Sequence.pm
 delete mode 100644 tRNAscanSE/Stats.pm
 delete mode 100644 tRNAscanSE/Tscan.pm
 delete mode 100644 tRNAscanSE/Utils.pm

-- 
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