[med-svn] [Git][med-team/centrifuge][master] 4 commits: Move hisat2 and jellyfish to Build-Depends to make sure package builds only on…

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / centrifuge


Commits:
72a3eac6 by Andreas Tille at 2018-02-14T14:14:23+01:00
Move hisat2 and jellyfish to Build-Depends to make sure package builds only on those architectures where it can be installed later

- - - - -
68ba9332 by Andreas Tille at 2018-02-14T14:17:56+01:00
-msse2 is already enabled by default on amd64 (which is the only architecture the package runs anyway)

- - - - -
a6b311f0 by Andreas Tille at 2018-02-14T14:18:24+01:00
debhelper 11

- - - - -
5df6ab61 by Andreas Tille at 2018-02-14T15:09:48+01:00
Upload to unstable

- - - - -


5 changed files:

- debian/changelog
- debian/compat
- debian/control
- + debian/patches/no_msse2.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,14 @@
+centrifuge (1.0.3~beta-2) unstable; urgency=medium
+
+  * Move hisat2 and jellyfish to Build-Depends to make sure package builds
+    only on those architectures where it can be installed later
+  * -msse2 is already enabled by default on amd64 (which is the only
+    architecture the package runs anyway)
+    Closes: #890378
+  * debhelper 11
+
+ -- Andreas Tille <tille at debian.org>  Wed, 14 Feb 2018 14:18:27 +0100
+
 centrifuge (1.0.3~beta-1) unstable; urgency=low
 
   * Initial release (Closes: #886463)


=====================================
debian/compat
=====================================
--- a/debian/compat
+++ b/debian/compat
@@ -1 +1 @@
-10
+11


=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -3,7 +3,9 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper (>= 10)
+Build-Depends: debhelper (>= 11~),
+               hisat2,
+               jellyfish
 Standards-Version: 4.1.3
 Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/centrifuge.git
 Vcs-Git: https://anonscm.debian.org/git/debian-med/centrifuge.git


=====================================
debian/patches/no_msse2.patch
=====================================
--- /dev/null
+++ b/debian/patches/no_msse2.patch
@@ -0,0 +1,17 @@
+Description: -msse2 is already enabled by default on amd64 (which is the only 
+    architecture the package runs anyway)
+Bug-Debian: https://bugs.debian.org/890378
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 14 Feb 2018 14:12:11 +0100
+
+--- a/Makefile
++++ b/Makefile
+@@ -160,7 +160,7 @@ endif
+ ifeq (64,$(BITS))
+ 	BITS_FLAG = -m64
+ endif
+-SSE_FLAG=-msse2
++SSE_FLAG=
+ 
+ DEBUG_FLAGS    = -O0 -g3 $(BIToS_FLAG) $(SSE_FLAG)
+ DEBUG_DEFS     = -DCOMPILER_OPTIONS="\"$(DEBUG_FLAGS) $(EXTRA_FLAGS)\""


=====================================
debian/patches/series
=====================================
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -2,3 +2,4 @@ fix_auto_ptr_usage_in_gcc-7.patch
 0002-Fix-build-with-rank.patch
 0003-Fix-make-install-DESTDIR.patch
 hardening.patch
+no_msse2.patch



View it on GitLab: https://salsa.debian.org/med-team/centrifuge/compare/0758cb5767eeb71f606704024f69c8b7d371dcc5...5df6ab6162a9591933222435ec7bf020ba95e6d5

---
View it on GitLab: https://salsa.debian.org/med-team/centrifuge/compare/0758cb5767eeb71f606704024f69c8b7d371dcc5...5df6ab6162a9591933222435ec7bf020ba95e6d5
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