[libmtj-java] 22/23: Merge tag 'upstream/1.0.1'
Andreas Tille
tille at debian.org
Tue Sep 2 10:00:53 UTC 2014
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch master
in repository libmtj-java.
commit 6f21b99b03132160beff918d900469608702d90b
Merge: e9713d0 4566192
Author: Andreas Tille <tille at debian.org>
Date: Tue Sep 2 11:56:37 2014 +0200
Merge tag 'upstream/1.0.1'
Upstream version 1.0.1
.gitignore | 6 +
README.md | 123 ++
build.xml | 19 +
debian/changelog | 45 -
debian/compat | 1 -
debian/control | 54 -
debian/copyright | 62 -
debian/libmtj-java-doc.javadoc | 1 -
debian/libmtj-java.jlibs | 1 -
debian/libmtj-java.links | 1 -
debian/patches/series | 1 -
debian/patches/use_debian_jar_files.patch | 21 -
debian/rules | 10 -
debian/source/format | 1 -
debian/watch | 2 -
logging.properties | 12 +
pom.xml | 151 +++
.../no/uib/cipr/matrix/AbstractBandMatrix.java | 258 +++++
.../no/uib/cipr/matrix/AbstractDenseMatrix.java | 170 +++
.../java/no/uib/cipr/matrix/AbstractMatrix.java | 888 ++++++++++++++
.../no/uib/cipr/matrix/AbstractPackMatrix.java | 121 ++
.../no/uib/cipr/matrix/AbstractSymmBandMatrix.java | 168 +++
.../uib/cipr/matrix/AbstractSymmDenseMatrix.java | 291 +++++
.../no/uib/cipr/matrix/AbstractSymmPackMatrix.java | 180 +++
.../uib/cipr/matrix/AbstractTriangBandMatrix.java | 160 +++
.../uib/cipr/matrix/AbstractTriangDenseMatrix.java | 295 +++++
.../uib/cipr/matrix/AbstractTriangPackMatrix.java | 186 +++
.../java/no/uib/cipr/matrix/AbstractVector.java | 304 +++++
src/main/java/no/uib/cipr/matrix/BandCholesky.java | 254 ++++
src/main/java/no/uib/cipr/matrix/BandLU.java | 241 ++++
src/main/java/no/uib/cipr/matrix/BandMatrix.java | 255 ++++
.../java/no/uib/cipr/matrix/DenseCholesky.java | 235 ++++
src/main/java/no/uib/cipr/matrix/DenseLU.java | 203 ++++
src/main/java/no/uib/cipr/matrix/DenseMatrix.java | 517 +++++++++
src/main/java/no/uib/cipr/matrix/DenseVector.java | 328 ++++++
.../java/no/uib/cipr/matrix/DenseVectorSub.java | 45 +
src/main/java/no/uib/cipr/matrix/Diag.java | 39 +
src/main/java/no/uib/cipr/matrix/EVD.java | 201 ++++
.../java/no/uib/cipr/matrix/GivensRotation.java | 94 ++
src/main/java/no/uib/cipr/matrix/JobEig.java | 39 +
src/main/java/no/uib/cipr/matrix/JobEigRange.java | 47 +
src/main/java/no/uib/cipr/matrix/JobSVD.java | 62 +
src/main/java/no/uib/cipr/matrix/LQ.java | 138 +++
.../no/uib/cipr/matrix/LowerSPDBandMatrix.java | 84 ++
.../no/uib/cipr/matrix/LowerSPDDenseMatrix.java | 77 ++
.../no/uib/cipr/matrix/LowerSPDPackMatrix.java | 77 ++
.../no/uib/cipr/matrix/LowerSymmBandMatrix.java | 99 ++
.../no/uib/cipr/matrix/LowerSymmDenseMatrix.java | 99 ++
.../no/uib/cipr/matrix/LowerSymmPackMatrix.java | 106 ++
.../no/uib/cipr/matrix/LowerTriangBandMatrix.java | 110 ++
.../no/uib/cipr/matrix/LowerTriangDenseMatrix.java | 179 +++
.../no/uib/cipr/matrix/LowerTriangPackMatrix.java | 181 +++
src/main/java/no/uib/cipr/matrix/Matrices.java | 690 +++++++++++
src/main/java/no/uib/cipr/matrix/Matrix.java | 755 ++++++++++++
src/main/java/no/uib/cipr/matrix/MatrixEntry.java | 48 +
.../no/uib/cipr/matrix/MatrixNotSPDException.java | 47 +
.../uib/cipr/matrix/MatrixSingularException.java | 47 +
.../no/uib/cipr/matrix/NotConvergedException.java | 85 ++
.../no/uib/cipr/matrix/OrthogonalComputer.java | 103 ++
src/main/java/no/uib/cipr/matrix/PackCholesky.java | 233 ++++
.../java/no/uib/cipr/matrix/PermutationMatrix.java | 111 ++
src/main/java/no/uib/cipr/matrix/QL.java | 139 +++
src/main/java/no/uib/cipr/matrix/QR.java | 138 +++
src/main/java/no/uib/cipr/matrix/QRP.java | 224 ++++
src/main/java/no/uib/cipr/matrix/RQ.java | 138 +++
.../java/no/uib/cipr/matrix/SPDTridiagMatrix.java | 97 ++
src/main/java/no/uib/cipr/matrix/SVD.java | 215 ++++
src/main/java/no/uib/cipr/matrix/Side.java | 39 +
src/main/java/no/uib/cipr/matrix/SymmBandEVD.java | 177 +++
src/main/java/no/uib/cipr/matrix/SymmDenseEVD.java | 225 ++++
src/main/java/no/uib/cipr/matrix/SymmEVD.java | 100 ++
src/main/java/no/uib/cipr/matrix/SymmPackEVD.java | 174 +++
.../java/no/uib/cipr/matrix/SymmTridiagEVD.java | 180 +++
.../java/no/uib/cipr/matrix/SymmTridiagMatrix.java | 324 ++++++
src/main/java/no/uib/cipr/matrix/Transpose.java | 39 +
.../java/no/uib/cipr/matrix/TridiagMatrix.java | 293 +++++
.../uib/cipr/matrix/UnitLowerTriangBandMatrix.java | 113 ++
.../cipr/matrix/UnitLowerTriangDenseMatrix.java | 107 ++
.../uib/cipr/matrix/UnitLowerTriangPackMatrix.java | 100 ++
.../uib/cipr/matrix/UnitUpperTriangBandMatrix.java | 113 ++
.../cipr/matrix/UnitUpperTriangDenseMatrix.java | 109 ++
.../uib/cipr/matrix/UnitUpperTriangPackMatrix.java | 100 ++
src/main/java/no/uib/cipr/matrix/UpLo.java | 37 +
.../no/uib/cipr/matrix/UpperSPDBandMatrix.java | 84 ++
.../no/uib/cipr/matrix/UpperSPDDenseMatrix.java | 77 ++
.../no/uib/cipr/matrix/UpperSPDPackMatrix.java | 77 ++
.../no/uib/cipr/matrix/UpperSymmBandMatrix.java | 99 ++
.../no/uib/cipr/matrix/UpperSymmDenseMatrix.java | 99 ++
.../no/uib/cipr/matrix/UpperSymmPackMatrix.java | 106 ++
.../no/uib/cipr/matrix/UpperTriangBandMatrix.java | 109 ++
.../no/uib/cipr/matrix/UpperTriangDenseMatrix.java | 175 +++
.../no/uib/cipr/matrix/UpperTriangPackMatrix.java | 181 +++
src/main/java/no/uib/cipr/matrix/Vector.java | 185 +++
src/main/java/no/uib/cipr/matrix/VectorEntry.java | 43 +
.../java/no/uib/cipr/matrix/io/MatrixInfo.java | 276 +++++
.../java/no/uib/cipr/matrix/io/MatrixSize.java | 120 ++
.../no/uib/cipr/matrix/io/MatrixVectorReader.java | 658 +++++++++++
.../no/uib/cipr/matrix/io/MatrixVectorWriter.java | 531 +++++++++
.../java/no/uib/cipr/matrix/io/VectorInfo.java | 187 +++
.../java/no/uib/cipr/matrix/io/VectorSize.java | 84 ++
src/main/java/no/uib/cipr/matrix/io/package.html | 17 +
src/main/java/no/uib/cipr/matrix/overview.html | 11 +
src/main/java/no/uib/cipr/matrix/package.html | 131 +++
src/main/java/no/uib/cipr/matrix/sparse/AMG.java | 929 +++++++++++++++
.../matrix/sparse/AbstractIterationMonitor.java | 126 ++
.../matrix/sparse/AbstractIterativeSolver.java | 98 ++
.../java/no/uib/cipr/matrix/sparse/ArpackSym.java | 156 +++
.../java/no/uib/cipr/matrix/sparse/Arrays.java | 175 +++
src/main/java/no/uib/cipr/matrix/sparse/BiCG.java | 104 ++
.../java/no/uib/cipr/matrix/sparse/BiCGstab.java | 118 ++
src/main/java/no/uib/cipr/matrix/sparse/CG.java | 89 ++
src/main/java/no/uib/cipr/matrix/sparse/CGS.java | 107 ++
.../java/no/uib/cipr/matrix/sparse/Chebyshev.java | 121 ++
.../no/uib/cipr/matrix/sparse/CompColMatrix.java | 479 ++++++++
.../no/uib/cipr/matrix/sparse/CompDiagMatrix.java | 458 ++++++++
.../no/uib/cipr/matrix/sparse/CompRowMatrix.java | 561 +++++++++
.../matrix/sparse/DefaultIterationMonitor.java | 164 +++
.../cipr/matrix/sparse/DiagonalPreconditioner.java | 78 ++
.../uib/cipr/matrix/sparse/FlexCompColMatrix.java | 253 ++++
.../uib/cipr/matrix/sparse/FlexCompRowMatrix.java | 267 +++++
src/main/java/no/uib/cipr/matrix/sparse/GMRES.java | 178 +++
src/main/java/no/uib/cipr/matrix/sparse/ICC.java | 155 +++
src/main/java/no/uib/cipr/matrix/sparse/ILU.java | 141 +++
src/main/java/no/uib/cipr/matrix/sparse/ILUT.java | 446 +++++++
src/main/java/no/uib/cipr/matrix/sparse/IR.java | 72 ++
.../no/uib/cipr/matrix/sparse/ISparseVector.java | 24 +
.../uib/cipr/matrix/sparse/IterationMonitor.java | 119 ++
.../uib/cipr/matrix/sparse/IterationReporter.java | 52 +
.../no/uib/cipr/matrix/sparse/IterativeSolver.java | 76 ++
.../IterativeSolverNotConvergedException.java | 91 ++
.../uib/cipr/matrix/sparse/LinkedSparseMatrix.java | 457 ++++++++
.../cipr/matrix/sparse/MatrixIterationMonitor.java | 131 +++
.../cipr/matrix/sparse/NoIterationReporter.java | 38 +
.../matrix/sparse/OutputIterationReporter.java | 64 +
.../no/uib/cipr/matrix/sparse/Preconditioner.java | 65 ++
src/main/java/no/uib/cipr/matrix/sparse/QMR.java | 222 ++++
src/main/java/no/uib/cipr/matrix/sparse/SSOR.java | 201 ++++
.../no/uib/cipr/matrix/sparse/SparseVector.java | 442 +++++++
.../no/uib/cipr/matrix/sparse/SuperIterator.java | 158 +++
.../cipr/matrix/sparse/UnitLowerCompRowMatrix.java | 88 ++
.../uib/cipr/matrix/sparse/UpperCompRowMatrix.java | 92 ++
.../java/no/uib/cipr/matrix/sparse/package.html | 63 +
.../cipr/matrix/sparse/LinkedSparseMatrixPerf.R | 111 ++
.../java/no/uib/cipr/matrix/BandCholeskyTest.java | 130 +++
src/test/java/no/uib/cipr/matrix/BandLUTest.java | 110 ++
.../java/no/uib/cipr/matrix/BandMatrixTest.java | 60 +
.../java/no/uib/cipr/matrix/DenseCholeskyTest.java | 126 ++
src/test/java/no/uib/cipr/matrix/DenseLUTest.java | 120 ++
.../java/no/uib/cipr/matrix/DenseMatrixTest.java | 123 ++
.../no/uib/cipr/matrix/DenseVectorSubTest.java | 23 +
.../java/no/uib/cipr/matrix/DenseVectorTest.java | 41 +
src/test/java/no/uib/cipr/matrix/LQTest.java | 84 ++
.../no/uib/cipr/matrix/LowerSPDBandMatrixTest.java | 43 +
.../uib/cipr/matrix/LowerSPDDenseMatrixTest.java | 42 +
.../no/uib/cipr/matrix/LowerSPDPackMatrixTest.java | 42 +
.../uib/cipr/matrix/LowerSymmBandMatrixTest.java | 43 +
.../uib/cipr/matrix/LowerSymmDenseMatrixTest.java | 42 +
.../uib/cipr/matrix/LowerSymmPackMatrixTest.java | 42 +
.../uib/cipr/matrix/LowerTriangBandMatrixTest.java | 45 +
.../cipr/matrix/LowerTriangDenseMatrixTest.java | 44 +
.../uib/cipr/matrix/LowerTriangPackMatrixTest.java | 44 +
.../no/uib/cipr/matrix/MatrixTestAbstract.java | 1224 ++++++++++++++++++++
.../no/uib/cipr/matrix/OrthogonalTestAbstract.java | 66 ++
.../java/no/uib/cipr/matrix/PackCholeskyTest.java | 125 ++
.../no/uib/cipr/matrix/PermutationMatrixTest.java | 64 +
src/test/java/no/uib/cipr/matrix/QLTest.java | 84 ++
src/test/java/no/uib/cipr/matrix/QRPTest.java | 181 +++
src/test/java/no/uib/cipr/matrix/QRTest.java | 84 ++
src/test/java/no/uib/cipr/matrix/RQTest.java | 84 ++
.../no/uib/cipr/matrix/SPDTridiagMatrixTest.java | 42 +
.../java/no/uib/cipr/matrix/SingularvalueTest.java | 85 ++
.../no/uib/cipr/matrix/SquareDenseMatrixTest.java | 42 +
.../matrix/StructImmutableMatrixTestAbstract.java | 142 +++
.../no/uib/cipr/matrix/SymmBandEigenvalueTest.java | 94 ++
.../uib/cipr/matrix/SymmDenseEigenvalueTest.java | 93 ++
.../cipr/matrix/SymmEigenvalueTestAbstract.java | 74 ++
.../no/uib/cipr/matrix/SymmPackEigenvalueTest.java | 93 ++
.../uib/cipr/matrix/SymmTridiagEigenvalueTest.java | 67 ++
.../no/uib/cipr/matrix/SymmTridiagMatrixTest.java | 42 +
.../cipr/matrix/SymmetricMatrixTestAbstract.java | 79 ++
.../uib/cipr/matrix/TriangMatrixTestAbstract.java | 37 +
.../java/no/uib/cipr/matrix/TridiagMatrixTest.java | 51 +
.../cipr/matrix/UnitLowerTriangBandMatrixTest.java | 43 +
.../matrix/UnitLowerTriangDenseMatrixTest.java | 59 +
.../cipr/matrix/UnitLowerTriangPackMatrixTest.java | 42 +
.../cipr/matrix/UnitTriangMatrixTestAbstract.java | 96 ++
.../cipr/matrix/UnitUpperTriangBandMatrixTest.java | 43 +
.../matrix/UnitUpperTriangDenseMatrixTest.java | 42 +
.../cipr/matrix/UnitUpperTriangPackMatrixTest.java | 42 +
.../no/uib/cipr/matrix/UpperSPDBandMatrixTest.java | 43 +
.../uib/cipr/matrix/UpperSPDDenseMatrixTest.java | 42 +
.../no/uib/cipr/matrix/UpperSPDPackMatrixTest.java | 42 +
.../uib/cipr/matrix/UpperSymmBandMatrixTest.java | 43 +
.../uib/cipr/matrix/UpperSymmDenseMatrixTest.java | 42 +
.../uib/cipr/matrix/UpperSymmPackMatrixTest.java | 42 +
.../uib/cipr/matrix/UpperTriangBandMatrixTest.java | 45 +
.../cipr/matrix/UpperTriangDenseMatrixTest.java | 44 +
.../uib/cipr/matrix/UpperTriangPackMatrixTest.java | 44 +
src/test/java/no/uib/cipr/matrix/Utilities.java | 516 +++++++++
.../no/uib/cipr/matrix/VectorTestAbstract.java | 296 +++++
.../no/uib/cipr/matrix/io/MatrixVectorIoTest.java | 28 +
.../no/uib/cipr/matrix/sparse/ArpackSymTest.java | 76 ++
.../uib/cipr/matrix/sparse/BiCGDiagonalTest.java | 40 +
.../no/uib/cipr/matrix/sparse/BiCGILUTest.java | 41 +
.../java/no/uib/cipr/matrix/sparse/BiCGTest.java | 39 +
.../cipr/matrix/sparse/BiCGstabDiagonalTest.java | 40 +
.../uib/cipr/matrix/sparse/BiCGstabILUTTest.java | 41 +
.../no/uib/cipr/matrix/sparse/BiCGstabILUTest.java | 41 +
.../no/uib/cipr/matrix/sparse/BiCGstabTest.java | 39 +
.../java/no/uib/cipr/matrix/sparse/CGAMGTest.java | 40 +
.../no/uib/cipr/matrix/sparse/CGDiagonalTest.java | 40 +
.../java/no/uib/cipr/matrix/sparse/CGICCTest.java | 41 +
.../no/uib/cipr/matrix/sparse/CGSDiagonalTest.java | 40 +
.../no/uib/cipr/matrix/sparse/CGSILUTTest.java | 41 +
.../java/no/uib/cipr/matrix/sparse/CGSILUTest.java | 41 +
.../java/no/uib/cipr/matrix/sparse/CGSSORTest.java | 42 +
.../java/no/uib/cipr/matrix/sparse/CGSTest.java | 39 +
.../java/no/uib/cipr/matrix/sparse/CGTest.java | 39 +
.../uib/cipr/matrix/sparse/ChebyshevAMGTest.java | 40 +
.../cipr/matrix/sparse/ChebyshevDiagonalTest.java | 40 +
.../uib/cipr/matrix/sparse/ChebyshevICCTest.java | 41 +
.../uib/cipr/matrix/sparse/ChebyshevSSORTest.java | 42 +
.../no/uib/cipr/matrix/sparse/ChebyshevTest.java | 50 +
.../uib/cipr/matrix/sparse/CompColMatrixTest.java | 45 +
.../uib/cipr/matrix/sparse/CompDiagMatrixTest.java | 43 +
.../uib/cipr/matrix/sparse/CompRowMatrixTest.java | 45 +
.../cipr/matrix/sparse/FlexCompColMatrixTest.java | 44 +
.../cipr/matrix/sparse/FlexCompRowMatrixTest.java | 44 +
.../uib/cipr/matrix/sparse/GMRESDiagonalTest.java | 40 +
.../no/uib/cipr/matrix/sparse/GMRESILUTTest.java | 41 +
.../no/uib/cipr/matrix/sparse/GMRESILUTest.java | 41 +
.../java/no/uib/cipr/matrix/sparse/GMRESTest.java | 39 +
.../java/no/uib/cipr/matrix/sparse/ICCTest.java | 46 +
.../java/no/uib/cipr/matrix/sparse/ILUTTest.java | 46 +
.../java/no/uib/cipr/matrix/sparse/ILUTest.java | 45 +
.../IncompleteFactorizationTestAbstract.java | 79 ++
.../matrix/sparse/IterativeSolverTestAbstract.java | 178 +++
.../cipr/matrix/sparse/LinkedSparseMatrixTest.java | 214 ++++
.../no/uib/cipr/matrix/sparse/QMRDiagonalTest.java | 40 +
.../no/uib/cipr/matrix/sparse/QMRILUTTest.java | 41 +
.../java/no/uib/cipr/matrix/sparse/QMRILUTest.java | 41 +
.../java/no/uib/cipr/matrix/sparse/QMRTest.java | 39 +
.../sparse/SPDIterativeSolverTestAbstract.java | 53 +
.../matrix/sparse/SparseMatrixTestAbstract.java | 56 +
.../SparseStructImmutableMatrixTestAbstract.java | 57 +
.../uib/cipr/matrix/sparse/SparseVectorTest.java | 100 ++
246 files changed, 31362 insertions(+), 200 deletions(-)
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