[Debian-med-packaging] [devteam-bioc] How to create the precompued results in GenomicAlignments

[Martin Morgan]

On 07/21/2014 01:36 PM, Maintainer wrote:
> Hi,
>
> I need to package GenomicAlignments for Debian to be able to upgrade
> several BioConductor modules in Debian to the latest version.
> Unfortunately there are some binary files in it which are not accepted
> by our ftpmaster since they come with no visible source.  Could you
> please give a short explanation how
>
>      vignettes/precomputed_results/*.rda

This is generated by code in the 
GenomicAlignments/vignettes/OverlapEncodings.Rnw file

>      vignettes/summarizeOverlaps-modes.pdf

a figure, created by hand, reproduced from the source in the figure.

>
> were created?
>
> Thanks a lot for your support
>
>          Andreas.
>
>
> ----- Forwarded message from Thorsten Alteholz <ftpmaster at ftp-master.debian.org> -----
>
> Date: Mon, 21 Jul 2014 17:00:05 +0000
> From: Thorsten Alteholz <ftpmaster at ftp-master.debian.org>
> To: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>, Andreas Tille <tille at debian.org>
> Subject: r-bioc-genomicalignments_1.0.2-1_amd64.changes REJECTED
>
>
> Hi Andreas,
>
> unfortunately I have to reject your package.
>
> As I like your explanation of rda-files in README.source, I now dearly
> miss them in this package.
>
> Can you please also explain where these two bam-files come from?
>
>>From other R packages I learned that each pdf-file is accompanied by an Rnw-file.
> This does not seem to be the case for ./vignettes/summarizeOverlaps-modes.pdf.
> So where does this pdf-file come from?
>
> Thanks!
>   Thorsten
>
> ===
>
> Please feel free to respond to this email if you don't understand why
> your files were rejected, or if you upload new files which address our
> concerns.
>
>
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>
>
> ----- End forwarded message -----
>


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