[Debian-med-packaging] IQ-TREE version 1.3.11

[Bui Quang Minh]

Dear Andreas,

As discussed I now include the pll library into a subfolder, instead of the submodule. The code should be compilable after cloning. The manual pdf is also removed. I pushed everything into the github repository.

can you please check it out?

Thanks!
Minh

> On Dec 14, 2015, at 10:49 AM, Andreas Tille <andreas at an3as.eu> wrote:
> 
> On Mon, Dec 14, 2015 at 10:16:15AM +0100, Bui Quang Minh wrote:
>>> Thinking twice about this:  May be via
>>> 
>>> git submodule init
>>> git submodule update
>> 
>> yes that’s right.
> 
> OK.
> 
>>> the problem could be solved but that's no option for the packaging
>>> process since the packaging needs to work without network connection and
>>> by using the content of the tarball exclusively.
>> 
>> I see your point… then one may need to create a real pll subfolder… what do you think?
> 
> The tarball simply needs to contain all files needed for compilation or
> link against separately packaged libraries.  If pll is a separate
> project that makes sense to package separately this could be an
> alternative approach.
> 
> I think this is also a general consideration.  If you provide a source
> tarball this should be complete in a sense that it can be build in
> itself (+ known and documented external libraries) and not require to
> pull the development Git.
> 
>> Minh
>> PS: Please remove the manual pdf
> 
> OK, I'll do once we know how to design the source tarball properly.
> 
> Kind regards and thanks a lot for the very quick replies
> 
>    Andreas.
> 
> -- 
> http://fam-tille.de

--
Bui Quang Minh
Center for Integrative Bioinformatics Vienna (CIBIV)
Campus Vienna Biocenter 5, VBC5, Ebene 1
A-1030 Vienna, Austria
Phone: ++43 1 4277 74326
Email: minh.bui (AT) univie.ac.at