[adios] branch debian/master updated (c4776e1 -> 2bdd513)
Alastair McKinstry
mckinstry at moszumanska.debian.org
Tue Dec 19 09:29:24 UTC 2017
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a change to branch debian/master
in repository adios.
from c4776e1 Drop dependency on libhdf5-serial-dev in favour of liubhdf5-dev Closes: #879132
adds 0cc89aa upstream release 1.13.0
new b6e4acd Merge tag 'upstream/1.13.0' into debian/master
new dafdab9 change version to 1.13.0-1
new 8aad883 Mark libadios-examples as M-A: foreign
new c882bb8 refresh patches
new ca9c5d2 Standards-Version: 4.1.2; no changes required
new 021d259 Change Vcs reference in control to https for security
new da89b1e Set exec bit correctly on example scripts
new ea82593 Add pointer to LGPL in common-licenses
new 2bdd513 push 1.13.0 to unstable
The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 85 ++-
Makefile.in | 70 ++-
NEWS | 10 +
aclocal.m4 | 70 +--
cmake_init | 6 +-
config.h.cmake | 9 +-
config.h.in | 9 +
config/ac_blosc.m4 | 83 +++
config/ac_sz.m4 | 6 +-
config/ac_zlib.m4 | 2 +-
configure | 367 +++++++++----
configure.ac | 39 +-
debian/changelog | 11 +
debian/control | 5 +-
debian/copyright | 2 +
debian/patches/exclude_cmake.patch | 6 +-
debian/patches/mpi4py_fix.patch | 10 +-
debian/patches/numpy_paths.patch | 12 +-
debian/patches/pkgconfig.patch | 30 +-
debian/patches/python_wrapper.patch | 18 +-
debian/rules | 7 +-
examples/C/CMakeLists.txt | 1 +
examples/C/Makefile.am | 2 +-
examples/C/Makefile.in | 30 +-
examples/C/arrays/Makefile.in | 28 +-
examples/C/attributes/Makefile.in | 28 +-
examples/C/flexpath_arrays/Makefile.in | 28 +-
.../global_range_select/Makefile.in | 28 +-
.../C/flexpath_arrays/process_select/Makefile.in | 28 +-
examples/C/global-array-time/Makefile.in | 28 +-
examples/C/global-array/Makefile.in | 28 +-
examples/C/icee_arrays/Makefile.in | 28 +-
examples/C/icee_arrays/array/Makefile.in | 28 +-
examples/C/{manual => joined-array}/CMakeLists.txt | 14 +-
examples/C/joined-array/Makefile.am | 15 +
.../C/joined-array}/Makefile.in | 74 +--
examples/C/joined-array/joined-array.c | 148 +++++
examples/C/manual/Makefile.in | 28 +-
examples/C/query/Makefile.in | 28 +-
examples/C/read_all/Makefile.in | 28 +-
examples/C/scalars/Makefile.in | 28 +-
examples/C/schema/Makefile.in | 28 +-
examples/C/stat/Makefile.in | 28 +-
examples/C/time_aggregation/Makefile.in | 28 +-
examples/C/transforms/Makefile.in | 28 +-
examples/Fortran/Makefile.in | 28 +-
examples/Fortran/arrays/Makefile.in | 28 +-
examples/Fortran/global-array-time/Makefile.in | 28 +-
examples/Fortran/global-array/Makefile.in | 28 +-
examples/Fortran/scalars/Makefile.in | 28 +-
examples/Fortran/schema/Makefile.in | 28 +-
examples/Makefile.in | 28 +-
examples/staging/stage_write/genarray_stream.xml | 1 +
.../twoway_coupling}/structured2d.c | 3 -
.../twoway_coupling}/structured2d.xml | 2 +-
.../{C/schema => staging/twoway_coupling}/tri2d.c | 3 -
.../schema => staging/twoway_coupling}/tri2d.xml | 2 +-
runconf | 226 +++++---
src/CMakeLists.txt | 4 +
src/Makefile.am | 1 +
src/Makefile.in | 66 ++-
src/core/a2sel.c | 11 +
src/core/adios.c | 6 +
src/core/adios_internals.c | 161 +++++-
src/core/adios_internals.h | 6 +
src/core/adios_internals_mxml.c | 7 +
src/core/adiost_callback_internal.c | 101 +++-
src/core/adiost_callback_internal.h | 35 +-
src/core/adiost_default_tool.c | 68 +--
src/core/bp_utils.c | 14 +-
src/core/common_adios.c | 58 +-
src/core/common_read.c | 120 +++--
src/core/flexpath.h | 4 +
src/mxml/Makefile.in | 28 +-
src/public/adios_error.h | 10 +-
src/public/adios_version.h | 6 +-
src/public/adiost_callback_api.h | 593 ++++++++++++++++++++-
src/read/read_bp.c | 18 +
src/read/read_flexpath.c | 476 ++++++++++++-----
src/transforms/Makefile.plugins | 4 +
src/transforms/adios_transform_blosc_common.h | 12 +
src/transforms/adios_transform_blosc_read.c | 180 +++++++
src/transforms/adios_transform_blosc_write.c | 297 +++++++++++
src/transforms/adios_transform_sz_read.c | 8 +-
src/transforms/adios_transform_sz_write.c | 62 ++-
src/transforms/transform_plugins.h | 1 +
src/write/adios_flexpath.c | 300 ++++++++---
src/write/adios_mpi_amr.c | 29 +-
src/zfp/Makefile.in | 28 +-
tests/C/Makefile.in | 28 +-
tests/C/fgr_tests/Makefile.in | 28 +-
tests/C/flexpath_tests/1D_arr_global/Makefile.in | 28 +-
.../flexpath_tests/1D_arr_global_noxml/Makefile.in | 28 +-
tests/C/flexpath_tests/Makefile.am | 2 +-
tests/C/flexpath_tests/Makefile.in | 30 +-
.../flexpath_tests/global_range_select/Makefile.in | 28 +-
tests/C/flexpath_tests/include/test_common.h | 2 +-
tests/C/flexpath_tests/local_arrays/Makefile.in | 28 +-
tests/C/flexpath_tests/maya_noxml/Makefile.in | 28 +-
tests/C/flexpath_tests/scalar/Makefile.in | 28 +-
.../CMakeLists.txt | 2 -
tests/C/flexpath_tests/two_streams/Makefile.am | 19 +
.../{maya_noxml => two_streams}/Makefile.in | 94 ++--
.../{1D_arr_global => two_streams}/cfg.h | 0
tests/C/flexpath_tests/two_streams/reader.c | 195 +++++++
tests/C/flexpath_tests/two_streams/writer.c | 129 +++++
tests/C/query/Makefile.in | 28 +-
tests/C/query/alacrity/Makefile.in | 28 +-
tests/C/query/common/Makefile.in | 28 +-
tests/C/query/fastbit/Makefile.in | 28 +-
tests/Fortran/Makefile.in | 28 +-
tests/Makefile.in | 28 +-
tests/bp_read/Makefile.in | 28 +-
tests/genarray/Makefile.in | 28 +-
tests/suite/Makefile.in | 28 +-
tests/suite/programs/CMakeLists.txt | 3 +-
tests/suite/programs/Makefile.am | 8 +-
tests/suite/programs/Makefile.in | 70 ++-
tests/suite/programs/examples/Makefile.in | 28 +-
.../suite/programs/examples/attributes/Makefile.in | 28 +-
.../programs/examples/global_array/Makefile.in | 28 +-
.../examples/global_array_time/Makefile.in | 28 +-
.../programs/examples/local_array/Makefile.in | 28 +-
tests/suite/programs/examples/scalars/Makefile.in | 28 +-
.../suite/programs/{selections.c => joinedarray.c} | 280 ++++++----
tests/test_src/Makefile.in | 32 +-
utils/Makefile.in | 28 +-
utils/adios_lint/Makefile.in | 28 +-
utils/adios_list_methods/Makefile.in | 28 +-
utils/bp2ascii/Makefile.in | 28 +-
utils/bp2bp/Makefile.in | 28 +-
utils/bp2h5/Makefile.in | 28 +-
utils/bp2ncd/Makefile.in | 28 +-
utils/bpdiff/Makefile.in | 28 +-
utils/bpdump/Makefile.in | 28 +-
utils/bpls/CMakeLists.txt | 1 +
utils/bpls/Makefile.in | 28 +-
utils/bpls/bpls.c | 316 ++++++++++-
utils/bpls/bpls.h | 5 +-
utils/bpmeta/Makefile.in | 28 +-
utils/bprecover/Makefile.in | 28 +-
utils/bpsplit/Makefile.in | 28 +-
utils/fastbit/Makefile.in | 28 +-
utils/fastbit/adios_index_fastbit.c | 5 +-
utils/gpp/Makefile.in | 30 +-
utils/skel/Makefile.in | 32 +-
utils/skel/etc/Makefile.in | 28 +-
utils/skel/src/Makefile.in | 30 +-
utils/skeldump/Makefile.in | 28 +-
utils/skeldump/skeldump.h | 1 +
wrappers/numpy/DEVELOPER | 2 -
wrappers/numpy/adios.cpp | 438 +++++++--------
wrappers/numpy/adios_mpi.cpp | 438 +++++++--------
wrappers/numpy/src/__init__.py | 2 +-
wrappers/numpy/src_mpi/__init__.py | 2 +-
155 files changed, 6275 insertions(+), 1749 deletions(-)
create mode 100644 config/ac_blosc.m4
copy examples/C/{manual => joined-array}/CMakeLists.txt (50%)
create mode 100644 examples/C/joined-array/Makefile.am
copy {tests/C/fgr_tests => examples/C/joined-array}/Makefile.in (92%)
create mode 100644 examples/C/joined-array/joined-array.c
copy examples/{C/schema => staging/twoway_coupling}/structured2d.c (98%)
copy examples/{C/schema => staging/twoway_coupling}/structured2d.xml (97%)
copy examples/{C/schema => staging/twoway_coupling}/tri2d.c (99%)
copy examples/{C/schema => staging/twoway_coupling}/tri2d.xml (98%)
create mode 100644 src/transforms/adios_transform_blosc_common.h
create mode 100644 src/transforms/adios_transform_blosc_read.c
create mode 100644 src/transforms/adios_transform_blosc_write.c
copy tests/C/flexpath_tests/{1D_arr_global_noxml => two_streams}/CMakeLists.txt (86%)
create mode 100644 tests/C/flexpath_tests/two_streams/Makefile.am
copy tests/C/flexpath_tests/{maya_noxml => two_streams}/Makefile.in (89%)
copy tests/C/flexpath_tests/{1D_arr_global => two_streams}/cfg.h (100%)
create mode 100644 tests/C/flexpath_tests/two_streams/reader.c
create mode 100644 tests/C/flexpath_tests/two_streams/writer.c
copy tests/suite/programs/{selections.c => joinedarray.c} (60%)
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