[adios] 01/09: Merge tag 'upstream/1.13.0' into debian/master
Alastair McKinstry
mckinstry at moszumanska.debian.org
Tue Dec 19 09:29:25 UTC 2017
This is an automated email from the git hooks/post-receive script.
mckinstry pushed a commit to branch debian/master
in repository adios.
commit b6e4acdc88eb0574d600c414e524166541a97c84
Merge: c4776e1 0cc89aa
Author: Alastair McKinstry <mckinstry at debian.org>
Date: Sat Dec 9 08:34:34 2017 +0000
Merge tag 'upstream/1.13.0' into debian/master
CMakeLists.txt | 85 ++-
Makefile.in | 70 ++-
NEWS | 10 +
aclocal.m4 | 70 +--
cmake_init | 6 +-
config.h.cmake | 9 +-
config.h.in | 9 +
config/ac_blosc.m4 | 83 +++
config/ac_sz.m4 | 6 +-
config/ac_zlib.m4 | 2 +-
configure | 367 +++++++++----
configure.ac | 39 +-
examples/C/CMakeLists.txt | 1 +
examples/C/Makefile.am | 2 +-
examples/C/Makefile.in | 30 +-
examples/C/arrays/Makefile.in | 28 +-
examples/C/attributes/Makefile.in | 28 +-
examples/C/flexpath_arrays/Makefile.in | 28 +-
.../global_range_select/Makefile.in | 28 +-
.../C/flexpath_arrays/process_select/Makefile.in | 28 +-
examples/C/global-array-time/Makefile.in | 28 +-
examples/C/global-array/Makefile.in | 28 +-
examples/C/icee_arrays/Makefile.in | 28 +-
examples/C/icee_arrays/array/Makefile.in | 28 +-
examples/C/joined-array/CMakeLists.txt | 23 +
examples/C/joined-array/Makefile.am | 15 +
.../C/joined-array}/Makefile.in | 74 +--
examples/C/joined-array/joined-array.c | 148 +++++
examples/C/manual/Makefile.in | 28 +-
examples/C/query/Makefile.in | 28 +-
examples/C/read_all/Makefile.in | 28 +-
examples/C/scalars/Makefile.in | 28 +-
examples/C/schema/Makefile.in | 28 +-
examples/C/stat/Makefile.in | 28 +-
examples/C/time_aggregation/Makefile.in | 28 +-
examples/C/transforms/Makefile.in | 28 +-
examples/Fortran/Makefile.in | 28 +-
examples/Fortran/arrays/Makefile.in | 28 +-
examples/Fortran/global-array-time/Makefile.in | 28 +-
examples/Fortran/global-array/Makefile.in | 28 +-
examples/Fortran/scalars/Makefile.in | 28 +-
examples/Fortran/schema/Makefile.in | 28 +-
examples/Makefile.in | 28 +-
examples/staging/stage_write/genarray_stream.xml | 1 +
examples/staging/twoway_coupling/structured2d.c | 146 +++++
examples/staging/twoway_coupling/structured2d.xml | 51 ++
examples/staging/twoway_coupling/tri2d.c | 301 +++++++++++
examples/staging/twoway_coupling/tri2d.xml | 76 +++
runconf | 226 +++++---
src/CMakeLists.txt | 4 +
src/Makefile.am | 1 +
src/Makefile.in | 66 ++-
src/core/a2sel.c | 11 +
src/core/adios.c | 6 +
src/core/adios_internals.c | 161 +++++-
src/core/adios_internals.h | 6 +
src/core/adios_internals_mxml.c | 7 +
src/core/adiost_callback_internal.c | 101 +++-
src/core/adiost_callback_internal.h | 35 +-
src/core/adiost_default_tool.c | 68 +--
src/core/bp_utils.c | 14 +-
src/core/common_adios.c | 58 +-
src/core/common_read.c | 120 +++--
src/core/flexpath.h | 4 +
src/mxml/Makefile.in | 28 +-
src/public/adios_error.h | 10 +-
src/public/adios_version.h | 6 +-
src/public/adiost_callback_api.h | 593 ++++++++++++++++++++-
src/read/read_bp.c | 18 +
src/read/read_flexpath.c | 476 ++++++++++++-----
src/transforms/Makefile.plugins | 4 +
src/transforms/adios_transform_blosc_common.h | 12 +
src/transforms/adios_transform_blosc_read.c | 180 +++++++
src/transforms/adios_transform_blosc_write.c | 297 +++++++++++
src/transforms/adios_transform_sz_read.c | 8 +-
src/transforms/adios_transform_sz_write.c | 62 ++-
src/transforms/transform_plugins.h | 1 +
src/write/adios_flexpath.c | 300 ++++++++---
src/write/adios_mpi_amr.c | 29 +-
src/zfp/Makefile.in | 28 +-
tests/C/Makefile.in | 28 +-
tests/C/fgr_tests/Makefile.in | 28 +-
tests/C/flexpath_tests/1D_arr_global/Makefile.in | 28 +-
.../flexpath_tests/1D_arr_global_noxml/Makefile.in | 28 +-
tests/C/flexpath_tests/Makefile.am | 2 +-
tests/C/flexpath_tests/Makefile.in | 30 +-
.../flexpath_tests/global_range_select/Makefile.in | 28 +-
tests/C/flexpath_tests/include/test_common.h | 2 +-
tests/C/flexpath_tests/local_arrays/Makefile.in | 28 +-
tests/C/flexpath_tests/maya_noxml/Makefile.in | 28 +-
tests/C/flexpath_tests/scalar/Makefile.in | 28 +-
tests/C/flexpath_tests/two_streams/CMakeLists.txt | 13 +
tests/C/flexpath_tests/two_streams/Makefile.am | 19 +
.../{maya_noxml => two_streams}/Makefile.in | 94 ++--
tests/C/flexpath_tests/two_streams/cfg.h | 15 +
tests/C/flexpath_tests/two_streams/reader.c | 195 +++++++
tests/C/flexpath_tests/two_streams/writer.c | 129 +++++
tests/C/query/Makefile.in | 28 +-
tests/C/query/alacrity/Makefile.in | 28 +-
tests/C/query/common/Makefile.in | 28 +-
tests/C/query/fastbit/Makefile.in | 28 +-
tests/Fortran/Makefile.in | 28 +-
tests/Makefile.in | 28 +-
tests/bp_read/Makefile.in | 28 +-
tests/genarray/Makefile.in | 28 +-
tests/suite/Makefile.in | 28 +-
tests/suite/programs/CMakeLists.txt | 3 +-
tests/suite/programs/Makefile.am | 8 +-
tests/suite/programs/Makefile.in | 70 ++-
tests/suite/programs/examples/Makefile.in | 28 +-
.../suite/programs/examples/attributes/Makefile.in | 28 +-
.../programs/examples/global_array/Makefile.in | 28 +-
.../examples/global_array_time/Makefile.in | 28 +-
.../programs/examples/local_array/Makefile.in | 28 +-
tests/suite/programs/examples/scalars/Makefile.in | 28 +-
tests/suite/programs/joinedarray.c | 539 +++++++++++++++++++
tests/test_src/Makefile.in | 32 +-
utils/Makefile.in | 28 +-
utils/adios_lint/Makefile.in | 28 +-
utils/adios_list_methods/Makefile.in | 28 +-
utils/bp2ascii/Makefile.in | 28 +-
utils/bp2bp/Makefile.in | 28 +-
utils/bp2h5/Makefile.in | 28 +-
utils/bp2ncd/Makefile.in | 28 +-
utils/bpdiff/Makefile.in | 28 +-
utils/bpdump/Makefile.in | 28 +-
utils/bpls/CMakeLists.txt | 1 +
utils/bpls/Makefile.in | 28 +-
utils/bpls/bpls.c | 316 ++++++++++-
utils/bpls/bpls.h | 5 +-
utils/bpmeta/Makefile.in | 28 +-
utils/bprecover/Makefile.in | 28 +-
utils/bpsplit/Makefile.in | 28 +-
utils/fastbit/Makefile.in | 28 +-
utils/fastbit/adios_index_fastbit.c | 5 +-
utils/gpp/Makefile.in | 30 +-
utils/skel/Makefile.in | 32 +-
utils/skel/etc/Makefile.in | 28 +-
utils/skel/src/Makefile.in | 30 +-
utils/skeldump/Makefile.in | 28 +-
utils/skeldump/skeldump.h | 1 +
wrappers/numpy/DEVELOPER | 2 -
wrappers/numpy/adios.cpp | 438 +++++++--------
wrappers/numpy/adios_mpi.cpp | 438 +++++++--------
wrappers/numpy/src/__init__.py | 2 +-
wrappers/numpy/src_mpi/__init__.py | 2 +-
146 files changed, 7211 insertions(+), 1570 deletions(-)
--
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